JSON-Rohbericht maschinenlesbar
{
"data": {
"repo": {
"topics": [],
"is_fork": false,
"size_kb": 38988,
"has_wiki": true,
"homepage": null,
"languages": {
"Python": 1620267,
"Makefile": 1153
},
"pushed_at": "2026-07-19T01:04:06Z",
"created_at": "2018-10-09T00:06:57Z",
"owner_type": "Organization",
"updated_at": "2026-07-20T18:48:59Z",
"description": "A modular compiler for biological chemical reaction networks",
"is_archived": false,
"is_disabled": false,
"license_spdx": "BSD-3-Clause",
"default_branch": "main",
"license_spdx_raw": "BSD-3-Clause",
"primary_language": "Python",
"significant_languages": [
"Python"
]
},
"owner": {
"blog": "http://buildacell.io",
"name": "Build-A-Cell",
"type": "Organization",
"login": "BuildACell",
"company": null,
"location": "Distributed like biology.",
"followers": 27,
"avatar_url": "https://avatars.githubusercontent.com/u/23123180?v=4",
"created_at": "2016-10-28T14:43:33Z",
"is_verified": null,
"public_repos": 12,
"account_age_days": 3557
},
"license": {
"state": "standard",
"spdx_id": "BSD-3-Clause",
"raw_spdx": "BSD-3-Clause",
"file_present": true,
"scorecard_found": true,
"profile_has_license": true
},
"activity": {
"releases": [
{
"tag": "v1.3.3",
"kind": "patch",
"published_at": "2026-07-19T01:04:06Z"
},
{
"tag": "v1.3.2",
"kind": "patch",
"published_at": "2025-09-15T02:41:27Z"
},
{
"tag": "1.3.1",
"kind": "patch",
"published_at": "2025-08-13T01:26:03Z"
},
{
"tag": "1.3.0",
"kind": "minor",
"published_at": "2025-08-12T03:21:29Z"
},
{
"tag": "1.1.2",
"kind": "patch",
"published_at": "2024-06-20T10:43:40Z"
},
{
"tag": "1.1.0",
"kind": "minor",
"published_at": "2021-06-21T17:43:47Z"
},
{
"tag": "1.0.0",
"kind": "major",
"published_at": "2020-08-03T19:47:51Z"
},
{
"tag": "0.9.0",
"kind": "minor",
"published_at": "2020-08-02T06:29:33Z"
}
],
"recent_commits": [
{
"oid": "d89e601397ad60588e45cf9a2e0214a54bbcf20c",
"body": "updated parameter processing",
"is_bot": false,
"headline": "Merge pull request #320 from murrayrm/parameter_update-22Nov2025",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2026-05-10T13:51:30Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2f14b630defaad5eaa5cd618500ee9eca00eb854",
"body": null,
"is_bot": false,
"headline": "ruff format",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2026-05-10T13:17:37Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2d9fee8737ed61002ef9f82604aad37f3b637682",
"body": null,
"is_bot": false,
"headline": "typo in workflow and add aliases for nL, mL so tests pass",
"author_name": "ayush9pandey",
"author_login": "ayush9pandey",
"committed_at": "2026-05-10T12:33:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "22e2ce9d8b2d9fb481b525ae0ce1cc20e1f09b26",
"body": null,
"is_bot": false,
"headline": "remove unnecessary test in unit params",
"author_name": "ayush9pandey",
"author_login": "ayush9pandey",
"committed_at": "2026-05-10T12:31:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b84d8504fb74cd537ebbcd0d84ab7e54a42afa02",
"body": "…r unit features for correct sbml handling of units",
"is_bot": false,
"headline": "fix sbml unit management with the new unit updates in pr320, add othe…",
"author_name": "ayush9pandey",
"author_login": "ayush9pandey",
"committed_at": "2026-05-10T12:31:33Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8869b5dd9a670c852026e2f001dbc6a13129e95d",
"body": null,
"is_bot": false,
"headline": "convert parameter files to pure ASCII",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-29T01:58:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "32b4302701ea657af023b5c7b970bb2101f58771",
"body": null,
"is_bot": false,
"headline": "add default parameter_file for enzyme mechanisms",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-28T22:16:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "714d5eccfb75923e5fe216c9988af839be446f73",
"body": null,
"is_bot": false,
"headline": "consistent capitalization of BioCRNpyler",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-28T13:29:48Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fbf03d9fad6974113e16404849d9c5dcdf09cef1",
"body": null,
"is_bot": false,
"headline": "add default parameter_file for transport mechanisms",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-28T13:16:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "469ec280ddd6ef58b568e6b1666e5eebd04b202c",
"body": null,
"is_bot": false,
"headline": "add (default) parameter files for txtl mechanisms",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-28T02:47:35Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e18e71bf00004ec5dca1c453494de8c630db90d6",
"body": null,
"is_bot": false,
"headline": "add documentation + code cleanup",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-27T14:21:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c1c77c1aee9975be61fff0f73a913a8e0bf5b5e8",
"body": null,
"is_bot": false,
"headline": "add missing reverse energy reaction for energy translation",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-26T19:15:37Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "79f6cfcb86300c3a40f5a6ebc02f51a852216b14",
"body": null,
"is_bot": false,
"headline": "change 'cooperative_binding' mechanism type to 'binding'",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-26T19:08:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9e482996dcc547eeafc52ed29491354e2df2295b",
"body": null,
"is_bot": false,
"headline": "allow part_id to be a list; add binding subtypes",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-26T18:54:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "831798d89a00ed096c6d0879b143b586bd88adda",
"body": null,
"is_bot": false,
"headline": "add default parameter files for mechanisms",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-25T04:39:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a89efb1a17a4c7d3b46df9e798bd8e7801b499f0",
"body": null,
"is_bot": false,
"headline": "add unit alaiases + checks, tests",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-22T15:53:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ba8bc5b4cf05c578c1c16aeade67786c9b5da46b",
"body": null,
"is_bot": false,
"headline": "add default parameters to mechanisms",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-22T15:52:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "77206f98420e4307ac2940638f0dfbf6d028e580",
"body": null,
"is_bot": false,
"headline": "fix issue with multiple toctrees",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-22T02:52:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e730f697b7886abd0a0b53584dcf909607c00a27",
"body": null,
"is_bot": false,
"headline": "Add missing PURE parameters + comments for TetR",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-08T02:49:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ff324834abd214a1a0ebfde4b027f897e6716c34",
"body": "…evels",
"is_bot": false,
"headline": "update PURE parameters and mechanisms to give reasonable expression l…",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-08T02:49:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b33d216321438ccab2505e9b48ed6164c1588e00",
"body": "… levels",
"is_bot": false,
"headline": "update extract parameters and mechanism to give reasonable expression…",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-08T02:49:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "17eb0580310c40ed358009417b0aae71c835e652",
"body": null,
"is_bot": false,
"headline": "RNAse, RNAase --> RNase",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-08T02:49:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4402cf1d4b84ac514c3e74e1fce93a6d0a99fb23",
"body": null,
"is_bot": false,
"headline": "use mechanisms/, mixtures/ for default parameters in most places",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-08T02:49:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9762716983c2e3a8059b03bdf57ff3ed2bc6cc50",
"body": null,
"is_bot": false,
"headline": "update default parameter files, including comments",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-08T02:49:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0fd9aa9f04f29aad94214a722db6b21cabc4b01a",
"body": null,
"is_bot": false,
"headline": "Merge pull request #318 from murrayrm/refmanual_updates-08Nov2025",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-12-08T02:47:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "34054070a04abeebc20d3ee6a1c96e1ab744daca",
"body": null,
"is_bot": false,
"headline": "add preprocessing code + simplified docstrings",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-11-22T02:53:12Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0f96369f46e4cfb9207b11b14edb4bb3ee533c9f",
"body": null,
"is_bot": false,
"headline": "update docs/conf.py to avoid mathjax3 errors",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-11-18T15:59:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "db07b5d406866c0c6f591223f6c460f8339a21d7",
"body": null,
"is_bot": false,
"headline": "fix ruff errors (long lines, indentation",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-11-18T15:59:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9ef15424ff530f0134c2348accdf5f1b669aabad",
"body": null,
"is_bot": false,
"headline": "remove excess whitespace",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-11-18T04:00:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5818d6dbbc5c33f7e842e62e5fd5c94735215a14",
"body": null,
"is_bot": false,
"headline": "\\textrm --> \\text",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-11-16T12:58:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e8c0353d3d448b8ea0d8f80c76ee618a5bfb079c",
"body": null,
"is_bot": false,
"headline": "fix: math mode in display mode and inline mode + use r-strings",
"author_name": "ayush9pandey",
"author_login": "ayush9pandey",
"committed_at": "2025-11-16T12:57:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f40151813bc13c11c9cfda894c6e591f4518fe5a",
"body": null,
"is_bot": false,
"headline": "fix: replace ..math:: with $ $ for math formatting in python docstrings",
"author_name": "ayush9pandey",
"author_login": "ayush9pandey",
"committed_at": "2025-11-16T12:56:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4d6f3e3bc2f9fd9f6bf2b3a06a84326950f47c5d",
"body": null,
"is_bot": false,
"headline": "fix: \\rightarrow to \\\\rightarrow in py docstrings",
"author_name": "ayush9pandey",
"author_login": "ayush9pandey",
"committed_at": "2025-11-16T12:55:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cda9050c32a3bec0ffc377111970390c1baa392d",
"body": null,
"is_bot": false,
"headline": "fix: math formatting in docstrings",
"author_name": "ayush9pandey",
"author_login": "ayush9pandey",
"committed_at": "2025-11-16T12:55:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "613cdf4889a327191b099e9243965fa289751632",
"body": null,
"is_bot": false,
"headline": "feat: mathjax instead of imgmath for docs",
"author_name": "ayush9pandey",
"author_login": "ayush9pandey",
"committed_at": "2025-11-16T12:54:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b2fb6784e4c391666a088accae95ac05f78085b2",
"body": null,
"is_bot": false,
"headline": "clean up tutorials and remove sphinx formating/sectioning errors",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-11-10T00:09:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3a63bd7e5f95265f0ec93fb4313197c49375af81",
"body": null,
"is_bot": false,
"headline": "update user guide to be more consistent; add advanced tutorials",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-11-10T00:09:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b7ed52c3062cba69d1eada9f757c3ddfc34c5793",
"body": null,
"is_bot": false,
"headline": "restructure auto-generation of library sections",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-11-10T00:09:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "99a87edfbcfcf28050fd705316855cf26b622824",
"body": "add numpydoc to docs/requirements.txt",
"is_bot": false,
"headline": "Merge pull request #317 from murrayrm/main",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-11-10T00:09:12Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1a447ada234ac3a928b5d735f427bb114eb49d80",
"body": null,
"is_bot": false,
"headline": "add numpydoc to docs/requirements.txt",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-11-10T00:07:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4be8f099fbbb9c95a437c85843160a435335b45b",
"body": "Docstring updates",
"is_bot": false,
"headline": "Merge pull request #316 from murrayrm/docstring_updates-14Oct2025",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-11-10T00:03:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b41b527749f7a16a832a9f1057239d63b5457c24",
"body": null,
"is_bot": false,
"headline": "add information about direct simulation of CRN using bioscrape",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-11-08T18:11:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "89a781195bdf8040ed9acd38c24ab1e29aa20919",
"body": null,
"is_bot": false,
"headline": "additional small fixes to remove sphinx warning messages",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-11-08T18:01:35Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "103ca98a40219b716e7273193e167d85ab2592b1",
"body": "…anisms",
"is_bot": false,
"headline": "modify update_species(), update_reactions() summaries to reflect mech…",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-11-08T13:50:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8a6aec13279e4271266e2135c98a3c95abe4658b",
"body": null,
"is_bot": false,
"headline": "clean up/simplify docstrings",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-11-08T03:14:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0f0fd422a91fc671d40138ce277d6fbfa1b45874",
"body": null,
"is_bot": false,
"headline": "undo non-docstring changes",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-11-02T13:27:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c1b3964b3700bc25d3b2d625252a7773dda67dda",
"body": null,
"is_bot": false,
"headline": "update docstrings in utils/ to numpydoc format",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-11-02T02:11:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fbe4a7d2f7c528aa734dea5ec9c8d403f85ecd5e",
"body": null,
"is_bot": false,
"headline": "updated docstrings for mixtures/",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-11-01T13:28:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ad3731a298eb10c908334c90e2458598241b9f13",
"body": null,
"is_bot": false,
"headline": "updated docstrings for mechnanisms/",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-11-01T02:04:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "63bb612e059962343183e4cdc88decfb09fd67cb",
"body": null,
"is_bot": false,
"headline": "updated docstrings for components/dna",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-27T08:30:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ced7b4df72bd38c65c62bbd45a5958395ca731ad",
"body": null,
"is_bot": false,
"headline": "change notation from -> to --> for consistency",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-26T08:54:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7f328b2c27472b643d7d49475d879506696e890f",
"body": null,
"is_bot": false,
"headline": "updated docstrigs for components/ (non-DNA) + related updates",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-26T08:53:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0941f072ce7aa25fbcf9048aa0f13dc33110dc23",
"body": null,
"is_bot": false,
"headline": "updated docstrings for core/ (with conf.py, pyproject.toml changes)",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-19T02:01:12Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "667196ab82d07e8af7b73c02a1c5e98dd627c991",
"body": "Code cleanup (ruff)",
"is_bot": false,
"headline": "Merge pull request #315 from murrayrm/code_cleanup-11Oct2025",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-15T05:11:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "be79bb94686abbe0bb5443fe6cd1993d29cc2412",
"body": null,
"is_bot": false,
"headline": "add ruff instruction to developer guide",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-15T05:10:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "98c47143a4f6392d833014ad994d03e37179ccc3",
"body": null,
"is_bot": false,
"headline": "fix species.py f-string error",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-14T20:41:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "843359316b33aab0530c4e814e47dadbc52744ff",
"body": null,
"is_bot": false,
"headline": "fix long lines (code and docstrings)",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-14T20:12:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5e1d73bf36456997558a3e8b5a39d6f0a3bacb72",
"body": null,
"is_bot": false,
"headline": "fix None, True, False, and type comparisons",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-14T20:12:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a573275c2858d6b0c24cf9b9712b8d24ba4a53e8",
"body": "…it__)",
"is_bot": false,
"headline": "get rid of star imports in package (still OK in tests, examples, __in…",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-14T20:12:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e9ccbf487349eaec29ac4ab1d17663894f622238",
"body": null,
"is_bot": false,
"headline": "initial pass at docstrings: capitalization, periods, blank lines",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-14T20:12:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cbc85c814ec8aac1332588d5f3a4db7bef331493",
"body": null,
"is_bot": false,
"headline": "sort imports (using isort)",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-14T20:12:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a031fdda2e2d1be8560cbd19107de7e9cd68e44b",
"body": null,
"is_bot": false,
"headline": "convert strings for user messages to double quotes",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-14T20:12:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "86783fd4c8bad3103dc231f86bc40dd1550547b6",
"body": null,
"is_bot": false,
"headline": "initial ruff formating",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-14T20:12:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ad66cd777f7179a495569dd124a7efe9950bee0d",
"body": null,
"is_bot": false,
"headline": "remove redundant definition of mM",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-14T20:07:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "aa6d4d11062e871b2cb50744518deeb9b956185d",
"body": null,
"is_bot": false,
"headline": "remove redefined, unused imports",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-14T20:07:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8e0c6af7a6eeefcaa12d0b5cd84d7a301c85f407",
"body": null,
"is_bot": false,
"headline": "remove extraneous f-strings",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-14T20:07:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "51cc3c0874135d5599b5c20d4808fba51c50f412",
"body": null,
"is_bot": false,
"headline": "remove unused variable assignments",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-14T20:07:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "db52f697230d6db08c82c5d01e323745e239323f",
"body": null,
"is_bot": false,
"headline": "remove unused imports",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-14T20:07:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "94662314f5ea38caf9115f3913cdc034dbc882eb",
"body": "Updates for DevCell project",
"is_bot": false,
"headline": "Merge pull request #314 from murrayrm/devcell_updates-10Sep2025",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-14T19:34:48Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "320b882dce4b24866360655d69551f8a5567a154",
"body": null,
"is_bot": false,
"headline": "update test_parameter.py to detect Windows",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-11T11:19:33Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8d048c8e3d5f3d8b0df9226e37ef7b11af84b2f2",
"body": null,
"is_bot": false,
"headline": "update examples to match code changes and fix bugs",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-11T02:26:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f7ed7b02325c72bd7cbbc4a67480393c2715ce5f",
"body": null,
"is_bot": false,
"headline": "add documentation on parameter searching + cleanup",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-10T01:57:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6725ffdb321588dbbdade4f122d76e17e7426bc0",
"body": null,
"is_bot": false,
"headline": "add PURE mixture + parameters",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-10-10T01:56:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9016894aa6533dd35ad463ee21fad46c0629785e",
"body": null,
"is_bot": false,
"headline": "add ability to search for parameter files in package, BCP_PATH",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-09-28T03:12:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cb3997b831e0a4c737fdc29cbdba7e5806ce9714",
"body": null,
"is_bot": false,
"headline": "fix spelling of Michaelis",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-09-17T02:41:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "08f4eec2853fbd66667b2027a8322e44194a47cb",
"body": null,
"is_bot": false,
"headline": "PEP8 updates: line length, params, if statements, quotes",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-09-17T02:08:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "242c4fa003152a66b6ed07bbd4d3170c11388d5b",
"body": null,
"is_bot": false,
"headline": "standardize kwarg usage + fix Michaelis spelling + PEP8",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-09-17T02:08:42Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "eeddfb2a89a05a5ecef681654e2ffd38a3a89cb7",
"body": null,
"is_bot": false,
"headline": "standardize kwarg usage + PEP8 fixes",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-09-17T02:00:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "86117e5ecb29e44f5500f819de24460ea75f9382",
"body": "Automatic versioning and new v1.3.2 ready for release",
"is_bot": false,
"headline": "Merge pull request #313 from BuildACell/patch-ver-sep14-2025",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-09-15T02:34:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e85a4baf3de1799c1c7847040063974146038c22",
"body": "…launch new releases",
"is_bot": false,
"headline": "add version from _version in docs/conf.py and add developer steps to …",
"author_name": "ayush9pandey",
"author_login": "ayush9pandey",
"committed_at": "2025-09-14T12:03:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9795f9aea8100308287aeff4ab3899730477d8f3",
"body": "…cated by libsbml), and add automatic versioning to pyproject and to __init__",
"is_bot": false,
"headline": "remove setup.py (deprecated), update py ver to 3.9 (earlier are depre…",
"author_name": "ayush9pandey",
"author_login": "ayush9pandey",
"committed_at": "2025-09-14T11:21:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "eb103eaf464fb3787d55a368cb9c63fe2e734616",
"body": null,
"is_bot": false,
"headline": "update enzyme mechanism keywords: enzyme, substrate, product",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-09-14T04:32:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "503b86c5d8418af40291acdab77e54fb4fe1f5dd",
"body": null,
"is_bot": false,
"headline": "add linefeeds in CRN.pretty_print()",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-09-13T04:59:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bb3414362ea9be0304236d2d603c1c700c25a61a",
"body": null,
"is_bot": false,
"headline": "small tweaks to docstrings and comments",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-09-13T04:59:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "14e9504a87f615877c05b508693017a675b21d98",
"body": null,
"is_bot": false,
"headline": "allow DNA to have a compartment",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-09-13T04:59:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "23837342589dcd2b5431ed57f9a944e109e3ded7",
"body": "Update sphinx documentation (User Guide + Reference Manual)",
"is_bot": false,
"headline": "Merge pull request #311 from murrayrm/update_docs-12Aug2025",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-09-13T04:41:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "828b32969a96eaa4a53c27c45d8b3aefd48a333e",
"body": "Patch compartment assignments in membrane component",
"is_bot": false,
"headline": "Merge pull request #312 from zjuradoq/refactor_patch-2",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-08-31T20:08:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4c8fa1b8cbafef42573df3de1e7c65329884a2b4",
"body": null,
"is_bot": false,
"headline": "update compartment handling in MembraneChannel (#24)",
"author_name": "Richard Murray",
"author_login": "murrayrm",
"committed_at": "2025-08-31T18:07:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "57e04e936eb372ed1111b181a02d91e570769e28",
"body": null,
"is_bot": false,
"headline": "Fix to component name.",
"author_name": "zjuradoq",
"author_login": "zjuradoq",
"committed_at": "2025-08-26T17:13:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8c61afc425ed80523125b5b8b1b42d5107caf596",
"body": null,
"is_bot": false,
"headline": "Changes to membrane.py. Fixed naming of component.",
"author_name": "zjuradoq",
"author_login": "zjuradoq",
"committed_at": "2025-08-26T15:35:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "01f9afcf9f38a064ae27cacd24641f9a1535946c",
"body": null,
"is_bot": false,
"headline": "Updates on Multicelluar Transport, removing depency on param `cell`.",
"author_name": "zjuradoq",
"author_login": "zjuradoq",
"committed_at": "2025-08-19T18:05:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6dad66918fbadb0a9244cdb4fd7e475dab8516d6",
"body": null,
"is_bot": false,
"headline": "Fixing name based on compartment name",
"author_name": "zjuradoq",
"author_login": "zjuradoq",
"committed_at": "2025-08-19T17:48:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "df5cc982223751698e15908e6b3a0ba0094fda42",
"body": null,
"is_bot": false,
"headline": "Removing parameter `cell` from membrane.py",
"author_name": "zjuradoq",
"author_login": "zjuradoq",
"committed_at": "2025-08-19T17:07:30Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f32e6c7e0fb37a1f6eaae17d1ec80273915eaef6",
"body": null,
"is_bot": false,
"headline": "Edits to accomidate multiple cells",
"author_name": "zjuradoq",
"author_login": "zjuradoq",
"committed_at": "2025-08-14T22:43:47Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7cf8c87801cdeb606449961a7ce79acebd4dd7e1",
"body": null,
"is_bot": false,
"headline": "Update membrane.py",
"author_name": "zjuradoq",
"author_login": "zjuradoq",
"committed_at": "2025-08-14T20:31:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "58b2e2c742d095412f1b0d116690f81a18ca04ef",
"body": null,
"is_bot": false,
"headline": "Fixing error: checking type()",
"author_name": "zjuradoq",
"author_login": "zjuradoq",
"committed_at": "2025-08-14T20:25:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d63c66b60c006457a7fba058e448f10c893b7ed4",
"body": null,
"is_bot": false,
"headline": "Creating a compartment object for all membrane components.",
"author_name": "zjuradoq",
"author_login": "zjuradoq",
"committed_at": "2025-08-14T20:12:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f17aa5a99e4add6676bf7be52ba7c2cce281324f",
"body": "…nt object from string.",
"is_bot": false,
"headline": "Minor changes to nonstandard spacing and update creation of compartme…",
"author_name": "zjuradoq",
"author_login": "zjuradoq",
"committed_at": "2025-08-14T19:44:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0a2cd1327466d6c8a3229b6e138d760cd92eb205",
"body": "Checks if compartment input a string or biocrnpyler object.",
"is_bot": false,
"headline": "Update membrane.py",
"author_name": "Zoila Jurado",
"author_login": "zjuradoq",
"committed_at": "2025-08-13T23:02:33Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "053e2d561116c993b6022ae883cdeecf4ed23985",
"body": null,
"is_bot": false,
"headline": "Update membrane.py",
"author_name": "Zoila Jurado",
"author_login": "zjuradoq",
"committed_at": "2025-08-13T22:51:36Z",
"body_truncated": false,
"is_coding_agent": false
}
],
"releases_count": 8,
"commits_last_year": 116,
"latest_release_at": "2026-07-19T01:04:06Z",
"latest_release_tag": "v1.3.3",
"releases_from_tags": false,
"days_since_last_push": 6,
"active_weeks_last_year": 21,
"days_since_latest_release": 6,
"mean_days_between_releases": 311
},
"community": {
"has_readme": true,
"has_license": true,
"has_description": true,
"has_contributing": false,
"health_percentage": 37,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"ecosystem": {
"packages": [
{
"name": "BioCRNpyler",
"exists": true,
"license": null,
"keywords": [
"SBML",
"synthetic biology",
"modeling",
"Chemical Reaction Network",
"CRN",
"Development Status :: 5 - Production/Stable",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: BSD License",
"Operating System :: OS Independent",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Topic :: Scientific/Engineering",
"Topic :: Software Development"
],
"ecosystem": "pypi",
"matches_repo": true,
"registry_url": "https://pypi.org/project/BioCRNpyler/",
"is_deprecated": false,
"latest_version": "1.3.3",
"repository_url": "https://github.com/buildacell/biocrnpyler/",
"versions_count": 14,
"total_downloads": null,
"dependents_count": null,
"deprecation_note": null,
"maintainers_count": null,
"monthly_downloads": null,
"first_published_at": "2020-08-01T11:04:22.222784Z",
"latest_published_at": "2026-07-19T01:05:08.512260Z",
"latest_version_yanked": null,
"days_since_latest_publish": 6
}
]
},
"popularity": {
"forks": 26,
"stars": 54,
"watchers": 10,
"fork_history": {
"days": [
{
"date": "2018-10-19",
"count": 1
},
{
"date": "2018-11-19",
"count": 1
},
{
"date": "2019-08-15",
"count": 1
},
{
"date": "2020-04-21",
"count": 1
},
{
"date": "2020-06-04",
"count": 1
},
{
"date": "2020-06-12",
"count": 1
},
{
"date": "2020-06-14",
"count": 1
},
{
"date": "2020-06-15",
"count": 1
},
{
"date": "2020-06-16",
"count": 3
},
{
"date": "2020-06-17",
"count": 1
},
{
"date": "2020-06-18",
"count": 1
},
{
"date": "2020-06-22",
"count": 1
},
{
"date": "2020-07-23",
"count": 1
},
{
"date": "2020-08-09",
"count": 1
},
{
"date": "2021-02-01",
"count": 1
},
{
"date": "2021-08-01",
"count": 1
},
{
"date": "2021-08-04",
"count": 1
},
{
"date": "2021-09-08",
"count": 1
},
{
"date": "2022-06-16",
"count": 1
},
{
"date": "2022-07-29",
"count": 1
},
{
"date": "2023-06-24",
"count": 1
},
{
"date": "2025-04-11",
"count": 1
},
{
"date": "2026-07-23",
"count": 1
}
],
"complete": true,
"collected": 25,
"total_forks": 26
},
"star_history": null,
"open_issues_and_prs": 41
},
"ai_readiness": {
"has_nix": false,
"example_dirs": [
"examples",
"notebooks"
],
"has_llms_txt": false,
"has_dockerfile": false,
"has_mcp_signal": false,
"bootstrap_files": [
"Makefile",
"docs/Makefile"
],
"api_schema_files": [],
"has_devcontainer": false,
"typecheck_configs": [],
"toolchain_manifests": [],
"largest_source_bytes": 93584,
"source_files_sampled": 104,
"oversized_source_files": 3,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"dependencies": {
"manifests": [
"docs/requirements.txt",
"pyproject.toml",
"setup.cfg"
],
"advisories": {
"error": null,
"scope": "published_package",
"source": "osv",
"findings": [],
"collected": true,
"malicious": [],
"truncated": false,
"by_severity": {},
"advisory_count": 0,
"affected_count": 0,
"assessed_count": 109,
"malicious_count": 0,
"assessed_package": "pypi:BioCRNpyler@1.3.3",
"unassessed_count": 0,
"direct_affected_count": 0
},
"ecosystems": [
"pypi"
],
"dependencies": [
{
"name": "python-libsbml",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "numpy",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": "<2.0"
},
{
"name": "matplotlib",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "networkx",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "bokeh",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">=1.4.0"
},
{
"name": "fa2_modified",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "jupyter",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "pytest",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "pytest-cov",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "nbconvert",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
}
],
"all_dependencies": {
"error": null,
"source": "github-sbom",
"packages": [
{
"name": "bokeh",
"direct": true,
"version": null,
"ecosystem": "pypi"
},
{
"name": "fa2-modified",
"direct": true,
"version": null,
"ecosystem": "pypi"
},
{
"name": "jupyter",
"direct": true,
"version": null,
"ecosystem": "pypi"
},
{
"name": "matplotlib",
"direct": true,
"version": null,
"ecosystem": "pypi"
},
{
"name": "nbconvert",
"direct": true,
"version": null,
"ecosystem": "pypi"
},
{
"name": "networkx",
"direct": true,
"version": null,
"ecosystem": "pypi"
},
{
"name": "numpy",
"direct": true,
"version": null,
"ecosystem": "pypi"
},
{
"name": "pytest",
"direct": true,
"version": null,
"ecosystem": "pypi"
},
{
"name": "pytest-cov",
"direct": true,
"version": null,
"ecosystem": "pypi"
},
{
"name": "python-libsbml",
"direct": true,
"version": null,
"ecosystem": "pypi"
},
{
"name": "nbsphinx",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "nbsphinx-link",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "numpydoc",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "pandoc",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "recommonmark",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "setuptools-scm",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "sphinx",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "sphinx-copybutton",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "sphinx-math-dollar",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "sphinx-rtd-theme",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "sphinx-toggleprompt",
"direct": false,
"version": null,
"ecosystem": "pypi"
}
],
"collected": true,
"truncated": false,
"total_count": 21,
"direct_count": 10,
"indirect_count": 11
}
},
"maintainership": {
"issues": {
"open_prs": 1,
"merged_prs": 120,
"open_issues": 40,
"closed_ratio": 0.783,
"closed_issues": 144,
"closed_unmerged_prs": 27
},
"bus_factor": 3,
"bot_contributors": 0,
"top_contributors": [
{
"type": "User",
"login": "ayush9pandey",
"commits": 129,
"avatar_url": "https://avatars.githubusercontent.com/u/8139195?v=4"
},
{
"type": "User",
"login": "zoltuz",
"commits": 102,
"avatar_url": "https://avatars.githubusercontent.com/u/17138838?v=4"
},
{
"type": "User",
"login": "dr3y",
"commits": 90,
"avatar_url": "https://avatars.githubusercontent.com/u/3620565?v=4"
},
{
"type": "User",
"login": "murrayrm",
"commits": 89,
"avatar_url": "https://avatars.githubusercontent.com/u/293362?v=4"
},
{
"type": "User",
"login": "WilliamIX",
"commits": 39,
"avatar_url": "https://avatars.githubusercontent.com/u/332650?v=4"
},
{
"type": "User",
"login": "zjuradoq",
"commits": 20,
"avatar_url": "https://avatars.githubusercontent.com/u/32440023?v=4"
},
{
"type": "User",
"login": "mkratz",
"commits": 5,
"avatar_url": "https://avatars.githubusercontent.com/u/56059080?v=4"
},
{
"type": "User",
"login": "sclamons",
"commits": 3,
"avatar_url": "https://avatars.githubusercontent.com/u/1700307?v=4"
},
{
"type": "User",
"login": "eldad-a",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/3859135?v=4"
}
],
"contributors_sampled": 9,
"top_contributor_share": 0.27
},
"quality_signals": {
"has_ci": true,
"has_tests": true,
"ci_workflows": [
"deploy.yml",
"pypi-release.yml",
"test.yml"
],
"has_docs_dir": true,
"linter_configs": [],
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"security_signals": {
"lockfiles": [],
"scorecard": {
"checks": [
{
"name": "Binary-Artifacts",
"score": 10,
"reason": "no binaries found in the repo",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
},
{
"name": "Branch-Protection",
"score": null,
"reason": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
},
{
"name": "CI-Tests",
"score": 10,
"reason": "2 out of 2 merged PRs checked by a CI test -- score normalized to 10",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
},
{
"name": "CII-Best-Practices",
"score": 0,
"reason": "no effort to earn an OpenSSF best practices badge detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
},
{
"name": "Code-Review",
"score": 0,
"reason": "Found 0/2 approved changesets -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
},
{
"name": "Contributors",
"score": 10,
"reason": "project has 5 contributing companies or organizations",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
},
{
"name": "Dangerous-Workflow",
"score": 10,
"reason": "no dangerous workflow patterns detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
},
{
"name": "Dependency-Update-Tool",
"score": 0,
"reason": "no update tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
},
{
"name": "Fuzzing",
"score": 0,
"reason": "project is not fuzzed",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
},
{
"name": "License",
"score": 10,
"reason": "license file detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
},
{
"name": "Maintained",
"score": 10,
"reason": "5 commit(s) and 10 issue activity found in the last 90 days -- score normalized to 10",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
},
{
"name": "Packaging",
"score": 10,
"reason": "packaging workflow detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
},
{
"name": "Pinned-Dependencies",
"score": 0,
"reason": "dependency not pinned by hash detected -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
},
{
"name": "SAST",
"score": 0,
"reason": "SAST tool is not run on all commits -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
},
{
"name": "Security-Policy",
"score": 0,
"reason": "security policy file not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
},
{
"name": "Signed-Releases",
"score": null,
"reason": "no releases found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
},
{
"name": "Token-Permissions",
"score": 0,
"reason": "detected GitHub workflow tokens with excessive permissions",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
},
{
"name": "Vulnerabilities",
"score": 10,
"reason": "0 existing vulnerabilities detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
}
],
"commit": "d89e601397ad60588e45cf9a2e0214a54bbcf20c",
"ran_at": "2026-07-26T00:05:28Z",
"aggregate_score": 5,
"scorecard_version": "v5.5.0"
},
"has_codeql_workflow": false,
"has_security_policy": false,
"has_dependabot_config": false
},
"contribution_flow": {
"collected": true,
"ci_last_run_at": "2026-07-19T01:05:15Z",
"oldest_open_prs": [
{
"number": 322,
"created_at": "2026-05-10T14:13:45Z",
"last_comment_at": null,
"last_comment_author": null
}
],
"last_merged_pr_at": "2026-05-10T13:51:30Z",
"ci_last_conclusion": "SUCCESS",
"oldest_open_issues": [
{
"number": 101,
"created_at": "2020-06-19T12:51:32Z",
"last_comment_at": "2025-03-10T05:41:15Z",
"last_comment_author": "murrayrm"
},
{
"number": 108,
"created_at": "2020-06-24T20:22:35Z",
"last_comment_at": "2020-06-26T10:28:19Z",
"last_comment_author": "zoltuz"
},
{
"number": 112,
"created_at": "2020-06-26T19:20:40Z",
"last_comment_at": "2020-08-27T18:39:54Z",
"last_comment_author": "WilliamIX"
},
{
"number": 182,
"created_at": "2020-09-17T17:43:34Z",
"last_comment_at": "2020-12-14T20:13:05Z",
"last_comment_author": "WilliamIX"
},
{
"number": 190,
"created_at": "2020-09-30T16:36:36Z",
"last_comment_at": "2020-12-14T21:58:27Z",
"last_comment_author": "WilliamIX"
},
{
"number": 193,
"created_at": "2020-10-01T01:53:22Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 213,
"created_at": "2020-12-18T20:56:12Z",
"last_comment_at": "2020-12-18T21:24:15Z",
"last_comment_author": "WilliamIX"
},
{
"number": 218,
"created_at": "2020-12-19T20:44:54Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 223,
"created_at": "2021-01-27T19:35:04Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 228,
"created_at": "2021-02-13T01:11:48Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 230,
"created_at": "2021-02-13T02:45:45Z",
"last_comment_at": "2021-02-13T04:43:55Z",
"last_comment_author": "sclamons"
},
{
"number": 233,
"created_at": "2021-02-23T21:03:38Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 236,
"created_at": "2021-05-14T19:48:21Z",
"last_comment_at": "2021-07-22T05:00:51Z",
"last_comment_author": "WilliamIX"
},
{
"number": 237,
"created_at": "2021-05-14T22:35:39Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 263,
"created_at": "2021-12-22T08:41:18Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 268,
"created_at": "2022-03-31T09:32:14Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 270,
"created_at": "2022-05-05T14:38:51Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 273,
"created_at": "2022-12-13T23:30:25Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 274,
"created_at": "2022-12-29T00:52:52Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 279,
"created_at": "2024-06-20T10:47:14Z",
"last_comment_at": null,
"last_comment_author": null
}
]
}
},
"config": {
"disabled_metrics": [],
"disabled_categories": [],
"disabled_components": {}
},
"source": {
"url": "https://github.com/BuildACell/bioCRNpyler",
"host": "github.com",
"name": "bioCRNpyler",
"owner": "BuildACell"
},
"metrics": {
"overall": {
"key": "overall",
"band": "moderate",
"name": "Overall health",
"note": null,
"notes": [],
"value": 68,
"inputs": {
"security": 60,
"vitality": 80,
"community": 47,
"governance": 74,
"engineering": 71
},
"components": []
},
"categories": [
{
"key": "vitality",
"band": "good",
"name": "Vitality",
"value": 80,
"weight": 0.22,
"metrics": [
{
"key": "development_activity",
"band": "good",
"name": "Development activity",
"note": null,
"notes": [],
"value": 78,
"inputs": {
"commits_last_year": 116,
"human_commit_share": 1,
"days_since_last_push": 6,
"active_weeks_last_year": 21
},
"components": [
{
"key": "push_recency",
"name": "Push recency",
"detail": "last push 6 days ago",
"points": 36,
"status": "met",
"details": [
{
"code": "push_recency",
"params": {
"days": 6
}
}
],
"max_points": 36
},
{
"key": "commit_cadence",
"name": "Commit cadence",
"detail": "21/52 weeks with commits",
"points": 14.5,
"status": "partial",
"details": [
{
"code": "commit_cadence_weeks",
"params": {
"weeks": 21
}
}
],
"max_points": 36
},
{
"key": "commit_volume",
"name": "Commit volume",
"detail": "116 commits in the last year",
"points": 18,
"status": "met",
"details": [
{
"code": "commits_last_year",
"params": {
"count": 116
}
}
],
"max_points": 18
},
{
"key": "openssf_scorecard_maintained",
"name": "OpenSSF Scorecard: Maintained",
"detail": "5 commit(s) and 10 issue activity found in the last 90 days -- score normalized to 10",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "release_discipline",
"band": "good",
"name": "Release discipline",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 84,
"inputs": {
"releases_count": 8,
"latest_release_tag": "v1.3.3",
"releases_from_tags": false,
"days_since_latest_release": 6,
"mean_days_between_releases": 311
},
"components": [
{
"key": "ships_releases",
"name": "Ships releases",
"detail": "8 releases published",
"points": 27,
"status": "met",
"details": [
{
"code": "releases_published",
"params": {
"count": 8
}
}
],
"max_points": 27
},
{
"key": "release_recency",
"name": "Release recency",
"detail": "latest release 6 days ago",
"points": 36,
"status": "met",
"details": [
{
"code": "release_recency",
"params": {
"days": 6
}
}
],
"max_points": 36
},
{
"key": "release_cadence",
"name": "Release cadence",
"detail": "a release every ~311 days",
"points": 12.6,
"status": "partial",
"details": [
{
"code": "release_cadence",
"params": {
"gap": 311
}
}
],
"max_points": 27
},
{
"key": "openssf_scorecard_signed_releases",
"name": "OpenSSF Scorecard: Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
}
]
},
{
"key": "abandonment",
"band": "excellent",
"name": "Abandonment",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"cap": null,
"state": "maintained",
"guards": [],
"signals": [],
"red_flag": false,
"multiplier_pct": 100,
"declared_reason": null,
"unverified_reason": null,
"unanswered_open_prs": null,
"unanswered_open_issues": null,
"days_since_last_merged_pr": null,
"days_since_last_human_commit": 76,
"days_since_last_human_commit_is_floor": false
},
"components": [
{
"key": "project_is_still_maintained",
"name": "Project is still maintained",
"detail": "last human commit 76 days ago",
"points": 100,
"status": "met",
"details": [
{
"code": "abandonment_maintained",
"params": {
"days": 76
}
}
],
"max_points": 100
}
]
}
],
"description": "Is the project alive — is code being written and are releases shipping?"
},
{
"key": "community",
"band": "at_risk",
"name": "Community & Adoption",
"value": 47,
"weight": 0.18,
"metrics": [
{
"key": "popularity",
"band": "at_risk",
"name": "Popularity & adoption",
"note": null,
"notes": [],
"value": 45,
"inputs": {
"forks": 26,
"stars": 54,
"watchers": 10,
"growth_state": "unverified",
"growth_factor_pct": 100,
"growth_unverified_reason": "no_history"
},
"components": [
{
"key": "stars",
"name": "Stars",
"detail": "54 stars",
"points": 28,
"status": "partial",
"details": [
{
"code": "stars",
"params": {
"count": 54
}
}
],
"max_points": 60
},
{
"key": "forks",
"name": "Forks",
"detail": "26 forks",
"points": 11.7,
"status": "partial",
"details": [
{
"code": "forks",
"params": {
"count": 26
}
}
],
"max_points": 25
},
{
"key": "watchers",
"name": "Watchers",
"detail": "10 watchers",
"points": 5.3,
"status": "partial",
"details": [
{
"code": "watchers",
"params": {
"count": 10
}
}
],
"max_points": 15
}
]
},
{
"key": "community_health",
"band": "moderate",
"name": "Community health",
"note": null,
"notes": [],
"value": 50,
"inputs": {
"has_readme": true,
"has_license": true,
"has_contributing": false,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 22.5,
"status": "met",
"details": [],
"max_points": 22.5
},
{
"key": "license",
"name": "License",
"detail": "recognized license (BSD-3-Clause)",
"points": 22.5,
"status": "met",
"details": [
{
"code": "license_standard",
"params": {}
},
{
"code": "license_spdx",
"params": {
"spdx": "BSD-3-Clause"
}
}
],
"max_points": 22.5
},
{
"key": "contributing_guide",
"name": "CONTRIBUTING guide",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "code_of_conduct",
"name": "Code of conduct",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 13.5
},
{
"key": "issue_template",
"name": "Issue template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.2
},
{
"key": "pr_template",
"name": "PR template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.3
}
]
}
],
"description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
},
{
"key": "governance",
"band": "good",
"name": "Sustainability & Governance",
"value": 74,
"weight": 0.24,
"metrics": [
{
"key": "maintainer_resilience",
"band": "good",
"name": "Maintainer resilience (bus factor)",
"note": null,
"notes": [],
"value": 75,
"inputs": {
"bus_factor": 3,
"contributors_sampled": 9,
"top_contributor_share": 0.27
},
"components": [
{
"key": "bus_factor",
"name": "Bus factor",
"detail": "3 contributor(s) cover half of all commits",
"points": 36,
"status": "partial",
"details": [
{
"code": "bus_factor",
"params": {
"count": 3
}
}
],
"max_points": 54
},
{
"key": "commit_distribution",
"name": "Commit distribution",
"detail": "top contributor authored 27% of commits",
"points": 16.4,
"status": "partial",
"details": [
{
"code": "top_contributor_share",
"params": {
"share": 27
}
}
],
"max_points": 22.5
},
{
"key": "contributor_breadth",
"name": "Contributor breadth",
"detail": "9 contributors",
"points": 12.2,
"status": "partial",
"details": [
{
"code": "contributors_sampled",
"params": {
"count": 9
}
}
],
"max_points": 13.5
},
{
"key": "openssf_scorecard_contributors",
"name": "OpenSSF Scorecard: Contributors",
"detail": "project has 5 contributing companies or organizations",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "moderate",
"name": "Issue & PR responsiveness",
"note": null,
"notes": [],
"value": 68,
"inputs": {
"merged_prs": 120,
"open_issues": 40,
"closed_issues": 144,
"issue_closed_ratio": 0.783,
"closed_unmerged_prs": 27
},
"components": [
{
"key": "issue_resolution",
"name": "Issue resolution",
"detail": "78% of issues closed",
"points": 36.6,
"status": "partial",
"details": [
{
"code": "issues_closed_share",
"params": {
"share": 78
}
}
],
"max_points": 46.75
},
{
"key": "pr_acceptance",
"name": "PR acceptance",
"detail": "120/147 decided PRs merged",
"points": 31.2,
"status": "partial",
"details": [
{
"code": "decided_prs_merged",
"params": {
"merged": 120,
"decided": 147
}
}
],
"max_points": 38.25
},
{
"key": "openssf_scorecard_code_review",
"name": "OpenSSF Scorecard: Code-Review",
"detail": "Found 0/2 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
}
]
},
{
"key": "stewardship",
"band": "moderate",
"name": "Ownership & stewardship",
"note": null,
"notes": [],
"value": 60,
"inputs": {
"followers": 27,
"owner_type": "Organization",
"is_verified": null,
"owner_login": "BuildACell",
"public_repos": 12,
"account_age_days": 3557
},
"components": [
{
"key": "ownership_backing",
"name": "Ownership backing",
"detail": "organization-owned",
"points": 30,
"status": "met",
"details": [
{
"code": "owner_organization",
"params": {}
}
],
"max_points": 30
},
{
"key": "verified_domain",
"name": "Verified domain",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "owner_reach",
"name": "Owner reach",
"detail": "27 followers of BuildACell",
"points": 10.4,
"status": "partial",
"details": [
{
"code": "owner_followers",
"params": {
"count": 27,
"login": "BuildACell"
}
}
],
"max_points": 25
},
{
"key": "track_record",
"name": "Track record",
"detail": "12 public repos, account ~9 yr old",
"points": 20.1,
"status": "partial",
"details": [
{
"code": "public_repos",
"params": {
"count": 12
}
},
{
"code": "account_age_years",
"params": {
"years": 9
}
}
],
"max_points": 25
}
]
},
{
"key": "package_maintenance",
"band": "excellent",
"name": "Package maintenance",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"packages": [
"BioCRNpyler"
],
"ecosystems": "pypi",
"any_deprecated": false,
"min_days_since_publish": 6
},
"components": [
{
"key": "published_resolvable",
"name": "Published & resolvable",
"detail": "1 package(s) on pypi",
"points": 25,
"status": "met",
"details": [
{
"code": "packages_published",
"params": {
"count": 1,
"ecosystems": "pypi"
}
}
],
"max_points": 25
},
{
"key": "publish_recency",
"name": "Publish recency",
"detail": "latest publish 6 days ago",
"points": 35,
"status": "met",
"details": [
{
"code": "publish_recency",
"params": {
"days": 6
}
}
],
"max_points": 35
},
{
"key": "version_history",
"name": "Version history",
"detail": "14 published versions",
"points": 20,
"status": "met",
"details": [
{
"code": "published_versions",
"params": {
"count": 14
}
}
],
"max_points": 20
},
{
"key": "not_deprecated",
"name": "Not deprecated",
"detail": "active, not deprecated or yanked",
"points": 20,
"status": "met",
"details": [
{
"code": "package_not_deprecated",
"params": {}
}
],
"max_points": 20
}
]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "good",
"name": "Engineering Quality",
"value": 71,
"weight": 0.2,
"metrics": [
{
"key": "engineering_practices",
"band": "moderate",
"name": "Engineering practices",
"note": null,
"notes": [],
"value": 68,
"inputs": {
"has_ci": true,
"has_tests": true,
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": "3 workflow(s)",
"points": 24,
"status": "met",
"details": [
{
"code": "ci_workflows",
"params": {
"count": 3
}
}
],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 24,
"status": "met",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "2 out of 2 merged PRs checked by a CI test -- score normalized to 10",
"points": 20,
"status": "met",
"details": [],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "good",
"name": "Documentation",
"note": null,
"notes": [],
"value": 75,
"inputs": {
"topics": [],
"has_wiki": true,
"homepage": null,
"has_readme": true,
"has_docs_dir": true,
"has_description": true
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 30,
"status": "met",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 25,
"status": "met",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
},
{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "moderate",
"name": "Security",
"value": 60,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "moderate",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): Branch-Protection, Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"branch_protection",
"signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 50,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 16,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 2,
"scorecard_aggregate": 5
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "2 out of 2 merged PRs checked by a CI test -- score normalized to 10",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 0/2 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 5 contributing companies or organizations",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no dangerous workflow patterns detected",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "no update tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "5 commit(s) and 10 issue activity found in the last 90 days -- score normalized to 10",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow detected",
"points": 5,
"status": "met",
"details": [],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "SAST tool is not run on all commits -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "detected GitHub workflow tokens with excessive permissions",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "0 existing vulnerabilities detected",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "dependency_advisories",
"band": "excellent",
"name": "Dependency advisories",
"note": "Excluded from scoring (no data or not applicable): No advisories left outstanding. Remaining weights renormalized. Matched the pypi:BioCRNpyler@1.3.3 runtime dependency closure — what installing the published package pulls in — 109 packages. Reachability is not analyzed.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"no_advisories_left_outstanding"
]
}
},
{
"code": "weights_renormalized",
"params": {}
},
{
"code": "advisories_scope_published",
"params": {
"package": "pypi:BioCRNpyler@1.3.3",
"assessed": 109
}
},
{
"code": "advisories_reachability",
"params": {}
}
],
"value": 100,
"inputs": {
"source": "osv",
"advisories": 0,
"affected_packages": 0,
"assessed_packages": 109,
"unassessed_packages": 0,
"affected_by_severity": "none",
"direct_affected_packages": 0
},
"components": [
{
"key": "direct_dependencies_free_of_known_advisories",
"name": "Direct dependencies free of known advisories",
"detail": "no direct dependency carries a known advisory",
"points": 35,
"status": "met",
"details": [
{
"code": "no_direct_advisories",
"params": {}
}
],
"max_points": 35
},
{
"key": "indirect_dependencies_free_of_known_advisories",
"name": "Indirect dependencies free of known advisories",
"detail": "no indirect dependency carries a known advisory",
"points": 25,
"status": "met",
"details": [
{
"code": "no_indirect_advisories",
"params": {}
}
],
"max_points": 25
},
{
"key": "no_advisories_left_outstanding",
"name": "No advisories left outstanding",
"detail": "no advisory carries a publication date",
"points": 0,
"status": "excluded",
"details": [
{
"code": "advisories_no_publication_date",
"params": {}
}
],
"max_points": 40
}
]
},
{
"key": "malicious_dependencies",
"band": "excellent",
"name": "Malicious dependencies",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"source": "osv",
"meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
"packages": [],
"red_flag": false,
"assessed_packages": 109,
"malicious_packages": 0,
"direct_malicious_packages": 0,
"withdrawn_malicious_packages": 0,
"installable_malicious_packages": 0
},
"components": [
{
"key": "no_dependency_reported_as_a_malicious_package",
"name": "No dependency reported as a malicious package",
"detail": "no dependency is reported as a malicious package",
"points": 100,
"status": "met",
"details": [
{
"code": "no_malicious_dependencies",
"params": {}
}
],
"max_points": 100
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "excellent",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"review_only_matches": 0,
"assessed_self_published_locations": 6
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "at_risk",
"name": "AI Readiness",
"value": 32,
"weight": 0,
"metrics": [
{
"key": "ai_agent_context",
"band": "critical",
"name": "Agent context & guidance",
"note": null,
"notes": [],
"value": 8,
"inputs": {
"has_llms_txt": false,
"legible_history_share": 0.15,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "legible_commit_history",
"name": "Legible commit history",
"detail": "15 of 100 human commits state their intent (structured subject or explanatory body)",
"points": 8,
"status": "partial",
"details": [
{
"code": "legible_history",
"params": {
"legible": 15,
"sampled": 100
}
}
],
"max_points": 40
}
]
},
{
"key": "ai_verify_loop",
"band": "at_risk",
"name": "Verify loop (build / test / typecheck)",
"note": null,
"notes": [],
"value": 40,
"inputs": {
"has_nix": false,
"has_tests": true,
"lockfiles": [],
"has_dockerfile": false,
"typed_language": false,
"bootstrap_files": [
"Makefile",
"docs/Makefile"
],
"has_devcontainer": false,
"has_linter_config": false,
"typecheck_configs": [],
"agent_commit_share": 0,
"toolchain_manifests": [],
"dependency_bot_commit_share": 0
},
"components": [
{
"key": "one_command_bootstrap",
"name": "One-command bootstrap",
"detail": "Makefile, docs/Makefile",
"points": 18,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "Makefile, docs/Makefile"
}
}
],
"max_points": 18
},
{
"key": "automated_tests",
"name": "Automated tests",
"detail": null,
"points": 22,
"status": "met",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "no agent-authored commits among the last 100",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_authored_commits",
"params": {
"sampled": 100
}
}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "no automated dependency updates observed",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_dependency_automation",
"params": {}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "moderate",
"name": "Code legibility for models",
"note": null,
"notes": [],
"value": 53,
"inputs": {
"primary_language": "Python",
"largest_source_bytes": 93584,
"source_files_sampled": 104,
"oversized_source_files": 3
},
"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "Python without a type-check config",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_typecheck_config_language",
"params": {
"language": "Python"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "3/104 source files over 60KB",
"points": 53.4,
"status": "partial",
"details": [
{
"code": "oversized_source_files",
"params": {
"kb": 60,
"sampled": 104,
"oversized": 3
}
}
],
"max_points": 55
}
]
},
{
"key": "ai_interfaces",
"band": "at_risk",
"name": "Machine-readable interfaces",
"note": null,
"notes": [],
"value": 40,
"inputs": {
"example_dirs": [
"examples",
"notebooks"
],
"has_mcp_signal": false,
"api_schema_files": []
},
"components": [
{
"key": "api_schema_openapi_graphql_proto",
"name": "API schema (OpenAPI/GraphQL/proto)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 40
},
{
"key": "mcp_server",
"name": "MCP server",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "runnable_examples",
"name": "Runnable examples",
"detail": "examples, notebooks",
"points": 40,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "examples, notebooks"
}
}
],
"max_points": 40
}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.13.0"
},
"warnings": [
"Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token"
],
"report_type": "repository",
"generated_at": "2026-07-26T00:05:47.931708Z",
"schema_version": "0.27.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/b/BuildACell/bioCRNpyler.svg",
"full_name": "BuildACell/bioCRNpyler",
"license_state": "standard",
"license_spdx": "BSD-3-Clause"
}