Öffentliches RegisterMittel
Software-GesundheitsberichtSchema 0.27.0 · Metriken 1.13.0 · 2026-07-26 01:54 UTC
vitessce / vitessce-python
Python API and Jupyter widget for Vitessce
vitessce/vitessce-python erreicht einen Gesundheitsindex von 57 von 100 und liegt damit im Bereich Mittel. Am stärksten schneidet es bei Engineering Quality (77/100) ab, am schwächsten bei AI Readiness (46/100). Zuletzt vor 45 Tagen aktualisiert. Ein einzelner Mitwirkender trägt den Großteil der jüngsten Arbeit.
57
gesamt / 100Software-Gesundheitsindex
Metriken werden auf einer Skala von 1–100 in gewichtete Kategorien gruppiert. Der Gesamtwert beginnt als ihr Mittel; sobald öffentliche Evidenz die Richtlinie für Hochrisikojurisdiktionen auslöst, wird die Bewertung angepasst und erhält die Obergrenze 49 (Gefährdet). AI Readiness liegt außerhalb.
57
Exzellent85-100Vorbildlich; erfüllt im Wesentlichen alle geprüften Kriterien
Gut70-84Gesund; geringfügige Lücken
Mittel50-69Akzeptabel mit deutlichen Lücken; Überprüfung empfohlen
Gefährdet30-49Erhebliche Schwächen; eine Übernahme erfordert Vorsicht
Kritisch1-29Schwerwiegende Probleme (aufgegeben, nur ein Maintainer, keine Hygiene)
Bewertungsprofil
Jede Achse ist eine Kategorie. Die Form zählt mehr als der Durchschnitt — ein gesundes Projekt füllt die gesamte Fläche, während ein Profil aus Spitzen und Kratern bedeutet, dass Stärke in einer Dimension Risiken in einer anderen verdeckt.
Eigentümerschaft
VitessceOrganisation
33 Follower12 öffentliche Reposseit Apr. 2020
Dieses Repository wird von einer Organisation getragen — geteilte, rechenschaftspflichtige Trägerschaft, die jeden einzelnen Maintainer überdauern kann.
Paket-Ökosysteme
| Registry | Paket | Version | Downloads / Monat | Versionen | Zuletzt veröffentlicht | Tags |
|---|---|---|---|---|---|---|
| PyPI | vitessce | 3.9.2 | - | 95 | vor 52 Tagen | ipythonjupyterwidgets |
Metriken nach Kategorie
Vitalität
Lebt das Projekt — wird Code geschrieben und werden Releases ausgeliefert?
47
Entwicklungsaktivität
49Gefährdet
Wie die Bewertung erfolgt
| 18/36 | Push-Aktualität — letzter Push vor 45 Tagen |
| 11.8/36 | Commit-Rhythmus — 17/52 Wochen mit Commits |
| 12.9/18 | Commit-Volumen — 26 Commits im letzten Jahr |
| 6/10 | OpenSSF Scorecard: Maintained — 6 commit(s) and 2 issue activity found in the last 90 days -- score normalized to 6 |
Verwendete Eingangsdaten
| commits_last_year | 26 |
| human_commit_share | 1 |
| days_since_last_push | 45 |
| active_weeks_last_year | 17 |
Release-Disziplin
44Gefährdet
Wie die Bewertung erfolgt
| 27/27 | Liefert Releases aus — 1 Releases veröffentlicht |
| 0/36 | Release-Aktualität — letztes Release vor 792 Tagen |
| 12.6/27 | Release-Rhythmus — Rhythmus unbekannt (nur ein Release) |
| 0/10 | OpenSSF Scorecard: Signed-Releases — keine Daten |
Verwendete Eingangsdaten
| releases_count | 1 |
| latest_release_tag | v3.2.6 |
| releases_from_tags | nein |
| days_since_latest_release | 792 |
| mean_days_between_releases | — |
Von der Bewertung ausgeschlossen (keine Daten oder nicht anwendbar): OpenSSF Scorecard: Signed-Releases. Die verbleibenden Gewichte wurden renormalisiert.
Community & Verbreitung
Hat das Projekt Nutzer, Downloads, Aufmerksamkeit und ein einladendes Umfeld für Beitragende?
46
Popularität & Verbreitung
42Gefährdet
Wie die Bewertung erfolgt
| 29.5/60 | Stars — 67 Stars |
| 8.7/25 | Forks — 12 Forks |
| 3.3/15 | Watcher — 5 Watcher |
Verwendete Eingangsdaten
| forks | 12 |
| stars | 67 |
| watchers | 5 |
| growth_state | unverified |
| growth_factor_pct | 100 |
| growth_unverified_reason | no_history |
Community-Gesundheit
50Mittel
Wie die Bewertung erfolgt
| 22.5/22.5 | README |
| 22.5/22.5 | Lizenz — anerkannte Lizenz (MIT) |
| 0/18 | CONTRIBUTING-Leitfaden |
| 0/13.5 | Verhaltenskodex |
| 0/7.2 | Issue-Vorlage |
| 0/6.3 | PR-Vorlage |
Verwendete Eingangsdaten
| has_readme | ja |
| has_license | ja |
| has_contributing | nein |
| has_issue_template | nein |
| has_code_of_conduct | nein |
| has_pull_request_template | nein |
Nachhaltigkeit & Governance
Überdauert das Projekt die Menschen, die es tragen — Bus-Faktor, Reaktionsfähigkeit, Trägerschaft und Paketpflege?
62
Maintainer-Resilienz (Bus-Faktor)
37Gefährdet
Wie die Bewertung erfolgt
| 9/54 | Bus-Faktor — 1 Beitragende decken die Hälfte aller Commits ab |
| 4.8/22.5 | Commit-Verteilung — wichtigste beitragende Person verfasste 79 % der Commits |
| 13.5/13.5 | Breite der Beitragenden — 10 Beitragende |
| 10/10 | OpenSSF Scorecard: Contributors — project has 12 contributing companies or organizations |
Verwendete Eingangsdaten
| bus_factor | 1 |
| contributors_sampled | 10 |
| top_contributor_share | 0,786 |
Wie die Bewertung erfolgt
| 23.6/46.8 | Issue-Lösungsquote — 50 % der Issues geschlossen |
| 35.2/38.3 | PR-Annahme — 241/262 entschiedene PRs gemergt |
| 3/15 | OpenSSF Scorecard: Code-Review — Found 6/30 approved changesets -- score normalized to 2 |
Verwendete Eingangsdaten
| merged_prs | 241 |
| open_issues | 109 |
| closed_issues | 111 |
| issue_closed_ratio | 0,505 |
| closed_unmerged_prs | 21 |
Eigentümerschaft & Trägerschaft
61Mittel
Wie die Bewertung erfolgt
| 30/30 | Organisatorische Trägerschaft — im Besitz einer Organisation |
| 0/20 | Verifizierte Domain |
| 11/25 | Reichweite des Inhabers — 33 Follower von vitessce |
| 20.1/25 | Kontohistorie — 12 öffentliche Repos, Kontoalter ca. 6 Jahre |
Verwendete Eingangsdaten
| followers | 33 |
| owner_type | Organization |
| is_verified | — |
| owner_login | vitessce |
| public_repos | 12 |
| account_age_days | 2.279 |
Paketpflege
100Exzellent
Wie die Bewertung erfolgt
| 25/25 | Veröffentlicht & auflösbar — 1 Paket(e) auf pypi |
| 35/35 | Veröffentlichungsaktualität — letzte Veröffentlichung vor 52 Tagen |
| 20/20 | Versionshistorie — 95 veröffentlichte Versionen |
| 20/20 | Nicht veraltet — aktiv, nicht veraltet oder zurückgezogen |
Verwendete Eingangsdaten
| packages | vitessce |
| ecosystems | pypi |
| any_deprecated | nein |
| min_days_since_publish | 52 |
Engineering-Qualität
Sind grundlegende Engineering- und Dokumentationspraktiken vorhanden?
77
Engineering-Praktiken
68Mittel
Wie die Bewertung erfolgt
| 24/24 | CI-Workflows — 6 Workflow(s) |
| 24/24 | Tests vorhanden |
| 0/16 | Linter-Konfiguration |
| 0/9.6 | Pre-Commit-Hooks |
| 0/6.4 | .editorconfig |
| 20/20 | OpenSSF Scorecard: CI-Tests — 30 out of 30 merged PRs checked by a CI test -- score normalized to 10 |
Verwendete Eingangsdaten
| has_ci | ja |
| has_tests | ja |
| has_editorconfig | nein |
| has_linter_config | nein |
| has_precommit_config | nein |
Dokumentation
90Exzellent
Wie die Bewertung erfolgt
| 30/30 | README |
| 25/25 | Dokumentationsverzeichnis |
| 15/15 | Dokumentations-/Homepage-Site — https://python-docs.vitessce.io |
| 10/10 | Repository-Beschreibung |
| 10/10 | Topics — 8 Topics |
| 0/10 | Wiki |
Verwendete Eingangsdaten
| topics | single-cell, kharchenkolab, data-visualization, vitessce, ipywidget, jupyter-widget, jupyterlab-extension, hidivelab |
| has_wiki | nein |
| homepage | https://python-docs.vitessce.io |
| has_readme | ja |
| has_docs_dir | ja |
| has_description | ja |
Sicherheit
Sind die sichtbaren Sicherheits- und Lieferkettenpraktiken belastbar, ohne ungeklärte Exposition gegenüber Hochrisikojurisdiktionen?
52
Sicherheitslage
40Gefährdet
Wie die Bewertung erfolgt
| 7.5/7.5 | Binary-Artifacts — no binaries found in the repo |
| 0/7.5 | Branch-Protection — keine Daten |
| 2.5/2.5 | CI-Tests — 30 out of 30 merged PRs checked by a CI test -- score normalized to 10 |
| 0/2.5 | CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected |
| 1.5/7.5 | Code-Review — Found 6/30 approved changesets -- score normalized to 2 |
| 2.5/2.5 | Contributors — project has 12 contributing companies or organizations |
| 10/10 | Dangerous-Workflow — no dangerous workflow patterns detected |
| 0/7.5 | Dependency-Update-Tool — no update tool detected |
| 0/5 | Fuzzing — project is not fuzzed |
| 2.5/2.5 | Lizenz — license file detected |
| 4.5/7.5 | Maintained — 6 commit(s) and 2 issue activity found in the last 90 days -- score normalized to 6 |
| 5/5 | Packaging — packaging workflow detected |
| 0/5 | Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
| 0/5 | SAST — SAST tool is not run on all commits -- score normalized to 0 |
| 0/5 | Security-Policy — security policy file not detected |
| 0/7.5 | Signed-Releases — keine Daten |
| 0/7.5 | Token-Permissions — detected GitHub workflow tokens with excessive permissions |
| 0/7.5 | Vulnerabilities — 170 existing vulnerabilities detected |
Verwendete Eingangsdaten
| source | openssf_scorecard |
| checks_evaluated | 16 |
| scorecard_version | v5.5.0 |
| checks_inconclusive | 2 |
| scorecard_aggregate | 4 |
Von der Bewertung ausgeschlossen (keine Daten oder nicht anwendbar): branch_protection, signed_releases. Die verbleibenden Gewichte wurden renormalisiert.
Abhängigkeits-Advisories
100Exzellent
Wie die Bewertung erfolgt
| 35/35 | Direkte Abhängigkeiten ohne bekannte Advisories — keine direkte Abhängigkeit trägt ein bekanntes Advisory |
| 25/25 | Indirekte Abhängigkeiten ohne bekannte Advisories — keine indirekte Abhängigkeit trägt ein bekanntes Advisory |
| 0/40 | Keine offenen Advisories — kein Advisory trägt ein Veröffentlichungsdatum |
Verwendete Eingangsdaten
| source | osv |
| advisories | 0 |
| affected_packages | 0 |
| assessed_packages | 18 |
| unassessed_packages | 0 |
| affected_by_severity | none |
| direct_affected_packages | 0 |
Von der Bewertung ausgeschlossen (keine Daten oder nicht anwendbar): Keine offenen Advisories. Die verbleibenden Gewichte wurden renormalisiert. Abgeglichen wurde die Laufzeit-Abhängigkeitshülle von pypi:vitessce@3.9.2 — das, was die Installation des veröffentlichten Pakets nach sich zieht — mit 18 Paketen. Erreichbarkeit wird nicht analysiert.
AI Readiness
Wie gut ist das Repository dafür ausgestattet, mit KI-Coding-Agenten entwickelt und gepflegt zu werden? Ein unabhängiges, experimentelles Badge — Gewicht 0,0, es wird eigenständig ausgewiesen und verändert den Gesamt-Gesundheitswert nicht.
46
AI-Agentenkontext & Leitlinien
40Gefährdet
Wie die Bewertung erfolgt
| 0/45 | Agentenanweisungen — keine CLAUDE.md / AGENTS.md / Editor-Regeln |
| 0/15 | Maschinenlesbare Doku (llms.txt) |
| 40/40 | Lesbare Commit-Historie — 99 von 100 menschlichen Commits benennen ihre Absicht (strukturierter Betreff oder erläuternder Text) |
Verwendete Eingangsdaten
| has_llms_txt | nein |
| legible_history_share | 0,99 |
| agent_instruction_files | — |
| agent_instruction_max_bytes | — |
Wie die Bewertung erfolgt
| 18/18 | Bootstrap mit einem Befehl — Makefile |
| 22/22 | Automatisierte Tests |
| 0/11 | Lint-/Format-Konfiguration |
| 0/11 | Statische Typprüfung |
| 10/10 | Reproduzierbare Umgebung — devcontainer, lockfile |
| 0/10 | Belegte Agentenpraxis — keine von Agenten verfassten Commits unter den letzten 100 |
| 0/8 | Automatisierte Wartung — keine automatisierten Abhängigkeits-Updates beobachtet |
| 0/10 | OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
Verwendete Eingangsdaten
| has_nix | nein |
| has_tests | ja |
| lockfiles | pnpm-lock.yaml, uv.lock |
| has_dockerfile | nein |
| typed_language | nein |
| bootstrap_files | Makefile |
| has_devcontainer | ja |
| has_linter_config | nein |
| typecheck_configs | — |
| agent_commit_share | 0 |
| toolchain_manifests | — |
| dependency_bot_commit_share | 0 |
AI-Code-Lesbarkeit für Modelle
53Mittel
Wie die Bewertung erfolgt
| 0/45 | Typprüfbarer Code — Python ohne Typprüfungs-Konfiguration |
| 53.2/55 | Handhabbare Dateigrößen — 2/61 Quelldateien über 60 KB |
Verwendete Eingangsdaten
| primary_language | Python |
| largest_source_bytes | 83.101 |
| source_files_sampled | 61 |
| oversized_source_files | 2 |
Maschinenlesbare AI-Schnittstellen
40Gefährdet
Wie die Bewertung erfolgt
| 0/40 | API-Schema (OpenAPI/GraphQL/proto) |
| 0/20 | MCP-Server |
| 40/40 | Lauffähige Beispiele — demos, notebooks |
Verwendete Eingangsdaten
| example_dirs | demos, notebooks |
| has_mcp_signal | nein |
| api_schema_files | — |
Eckdaten
67GitHub-Sterne
10Mitwirkende
26Commits, letzte 12 Monate
45Tage seit letztem Push
1Releases
1Bus-Faktor
109offene Issues
npm, PyPIPaket-Ökosysteme
Warnungen zur Datenerhebung
- Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
- GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository
Weitere Details
Stern- und Fork-Verlauf 0 ★ / 12 ⇿
0Sterne
12Forks
1Releases
Wann jeder Stern und Fork hinzugefügt wurde, von GitHub erfasst und nach Tagen gruppiert. Das kumulierte Wachstum steht direkt über den täglichen Zugängen, aus denen es besteht, sodass beide gegeneinander lesbar sind: stetiger organischer Zuwachs sieht ganz anders aus als ein abrupter, kurzlebiger Ausschlag. Wo dieser Unterschied messbar ist, wird er als Wachstumsauthentizität ausgewiesen.
Major 0Minor 0Patch 1
Jeder Punkt umfasst 5 Tage.
OpenSSF Scorecard 4.0 / 10
4.0Gesamtwert
Unabhängige, werkzeugneutrale Sicherheitsbewertung durch das quelloffene OpenSSF Scorecard. Jede Prüfung honoriert eine Sicherheits-Praxis, nicht das Werkzeug eines bestimmten Anbieters. Prüfungen, die Scorecard nicht ermitteln konnte, sind mit k. A. markiert und vom Sicherheitswert ausgeschlossen (nie als null gezählt).
| 10 | Binary-Artifacts | no binaries found in the repo |
| k. A. | Branch-Protection | internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md |
| 10 | CI-Tests | 30 out of 30 merged PRs checked by a CI test -- score normalized to 10 |
| 0 | CII-Best-Practices | no effort to earn an OpenSSF best practices badge detected |
| 2 | Code-Review | Found 6/30 approved changesets -- score normalized to 2 |
| 10 | Contributors | project has 12 contributing companies or organizations |
| 10 | Dangerous-Workflow | no dangerous workflow patterns detected |
| 0 | Dependency-Update-Tool | no update tool detected |
| 0 | Fuzzing | project is not fuzzed |
| 10 | License | license file detected |
| 6 | Maintained | 6 commit(s) and 2 issue activity found in the last 90 days -- score normalized to 6 |
| 10 | Packaging | packaging workflow detected |
| 0 | Pinned-Dependencies | dependency not pinned by hash detected -- score normalized to 0 |
| 0 | SAST | SAST tool is not run on all commits -- score normalized to 0 |
| 0 | Security-Policy | security policy file not detected |
| k. A. | Signed-Releases | no releases found |
| 0 | Token-Permissions | detected GitHub workflow tokens with excessive permissions |
| 0 | Vulnerabilities | 170 existing vulnerabilities detected |
Direkte Abhängigkeiten 5
| Registry | Paket | Versionsvorgabe | Manifest |
|---|---|---|---|
| PyPI | scipy | >=1.2.1 | pyproject.toml |
| PyPI | pandas | >=1.1.2 | pyproject.toml |
| PyPI | black | >=21.11b1 | pyproject.toml |
| PyPI | numpy | >=1.21.2 | pyproject.toml |
| PyPI | zarr | >=3.0.0 | pyproject.toml |
Alle Abhängigkeiten nicht erhoben
Der aufgelöste Abhängigkeitssatz konnte für diesen Bericht nicht erhoben werden: GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository
Abhängigkeits-Advisories 0
Die Installation von pypi:vitessce@3.9.2 zieht 18 Pakete nach sich, direkt und transitiv: 0 tragen bekannte Advisories, davon 0 direkte Abhängigkeiten.
Keine bekannten Advisories betreffen die bewerteten Abhängigkeiten.
Ein Advisory bedeutet, dass die im Abhängigkeitsgraphen erfasste Version in den betroffenen Bereich eines Advisories fällt. Erreichbarkeit wird nicht analysiert, und der Graph enthält Entwicklungs- und Test-Pins — ein Fund kann das Werkzeug betreffen und nicht die ausgelieferte Software.
JSON-Rohbericht maschinenlesbar
{
"data": {
"repo": {
"topics": [
"single-cell",
"kharchenkolab",
"data-visualization",
"vitessce",
"ipywidget",
"jupyter-widget",
"jupyterlab-extension",
"hidivelab"
],
"is_fork": false,
"size_kb": 42076,
"has_wiki": false,
"homepage": "https://python-docs.vitessce.io",
"languages": {
"Python": 463971,
"Makefile": 640,
"JavaScript": 3069
},
"pushed_at": "2026-06-10T20:06:08Z",
"created_at": "2020-09-01T21:11:52Z",
"owner_type": "Organization",
"updated_at": "2026-06-10T20:07:30Z",
"description": "Python API and Jupyter widget for Vitessce",
"is_archived": false,
"is_disabled": false,
"license_spdx": "MIT",
"default_branch": "main",
"license_spdx_raw": "MIT",
"primary_language": "Python",
"significant_languages": [
"Python"
]
},
"owner": {
"blog": "http://vitessce.io",
"name": "Vitessce",
"type": "Organization",
"login": "vitessce",
"company": null,
"location": null,
"followers": 33,
"avatar_url": "https://avatars.githubusercontent.com/u/64494652?v=4",
"created_at": "2020-04-28T18:14:32Z",
"is_verified": null,
"public_repos": 12,
"account_age_days": 2279
},
"license": {
"state": "standard",
"spdx_id": "MIT",
"raw_spdx": "MIT",
"file_present": true,
"scorecard_found": true,
"profile_has_license": true
},
"activity": {
"releases": [
{
"tag": "v3.2.6",
"kind": "patch",
"published_at": "2024-05-24T18:01:04Z"
}
],
"recent_commits": [
{
"oid": "7e7bcee1e090e2e3a4833df542ceff2373ed8a7a",
"body": null,
"is_bot": false,
"headline": "Update README.md (#507)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-06-10T20:06:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ff02d80d5ad8542709a6fbc78927c4587b716da7",
"body": "* Convert async custom message handlers to sync\n\n* Lint\n\n* Update",
"is_bot": false,
"headline": "Convert async custom message handlers to sync (#506)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-06-04T01:24:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d1bf74e1ae84a80d0072f1dd0e86c74d201bf77e",
"body": null,
"is_bot": false,
"headline": "Upgrade js version (#505)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-05-29T17:55:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "46bee69ec781d126a35465eeb3fa817489bb3807",
"body": "Co-authored-by: Mark Keller <7525285+keller-mark@users.noreply.github.com>",
"is_bot": false,
"headline": "Add is_zip handling to multivec wrapper (#503)",
"author_name": "Nikolay Akhmetov",
"author_login": "NickAkhmetov",
"committed_at": "2026-05-29T17:49:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "624db76f9b68bb78b8c454406c15f43d9ab61375",
"body": "* use zarr3 and unpin dask\n\n* relax ome-zarr upped bound\n\n* allow-direct-references hatch\n\n* set tool.hatch.metadata.allow-direct-references false\n\n* WIP: support for zarr v3\n\n* WIP: fix tests\n\n* Remove storage of explicit bounding_box metadata\n\n* Lint\n\n* Pin snakemake\n\n* Lint\n\n* F-string issue\n\n* Undo pin snakemake\n\n* Update xenium morton code nb\n\n* Updates\n\n---------\n\nCo-authored-by: Mark Keller <7525285+keller-mark@users.noreply.github.com>",
"is_bot": false,
"headline": "Use zarr3 and unpin dask (#486)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-05-27T20:11:32Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ef0ecf5595b6b03bd43435dd8a889895de1302ce",
"body": null,
"is_bot": false,
"headline": "Bump js package version (#504)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-05-21T15:48:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9f31d6ec1a8c4f11baf73efa71bab28ba474e23f",
"body": null,
"is_bot": false,
"headline": "Update (#500)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-04-17T15:30:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "564a35d4f793aad219b4455de96696593e9f16ab",
"body": null,
"is_bot": false,
"headline": "Update action version (#499)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-04-17T15:23:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "342be73e062ba0d647f032aada839bb4bec80ae0",
"body": null,
"is_bot": false,
"headline": "Release new version (#498)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-04-17T15:16:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e7a01754f55398b64c7c95982c6a58330f168cef",
"body": "* update initialization of SpatialQuery object\n\n* set various colors for motifs, change default parameters\n\n* add query type with specified anchor cells\n\n* seperate colors to by motif and by type in two trees\n\n* add HeatmapView of SpatialQuery motif\n\n* keep the motif orders between heatmap and cell \n[…]\ns identified\n\n* update bracket position\n\n* Troubleshoot installation and update notebook\n\n* Update nb\n\n* Comments\n\n---------\n\nCo-authored-by: Mark Keller <7525285+keller-mark@users.noreply.github.com>",
"is_bot": false,
"headline": "Update of SpatialQuery module in Vitessce (#495)",
"author_name": "Shaokun An",
"author_login": null,
"committed_at": "2026-04-17T14:43:06Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "9faf440114af804de82f6f7219d16f24a86d3e46",
"body": "* Version bump\n\n* Bump js version and update blobs notebook\n\n* Update script\n\n* Lint\n\n* Update\n\n* Add getRange support to widget\n\n* Bump\n\n* Lint",
"is_bot": false,
"headline": "Version bump v3.9.4 (#492)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-02-12T13:37:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2c36e0c5bf61047f71f6207be3fcc34a57536cc9",
"body": "* Version bump\n\n* Bump js version and update blobs notebook\n\n* Update script\n\n* Lint\n\n* Update",
"is_bot": false,
"headline": "Version bump (#490)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-02-05T17:47:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "adb066c088307b658a45ca9cf2ab2d63effaa5ef",
"body": null,
"is_bot": false,
"headline": "Bump js version (#489)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-01-20T15:45:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "92ace00dc917dd07c3cf75ad9c9b72fbfb9b6876",
"body": "* Bump js version\n\n* Support featureLabels and obsEmbedding in SpatialDataWrapper\n\n* Update test",
"is_bot": false,
"headline": "Bump js version (#485)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-11-12T20:48:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "88312360202005d8f7ea6fd09af798829b8b7ef2",
"body": null,
"is_bot": false,
"headline": "Bump version from 3.7.7 to 3.7.8 (#484)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-11-03T21:43:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "324a5b006a358cfdf3d6cec3725c633b574d2a10",
"body": "* Add zorder functions to data_utils\n\n* Add comments, updated notebook\n\n* Comments\n\n* Comments\n\n* WIP: unit tests\n\n* Update z-order query tests\n\n* Use fixtures\n\n* Update tests\n\n* WIP: update nb\n\n* Add helper functions\n\n* Update nb\n\n* Lint\n\n* Use small dataset for tests\n\n* Lint\n\n* Add spatialdata dep for tests\n\n* Update\n\n* Update\n\n* Update\n\n* Update",
"is_bot": false,
"headline": "Utilities for sorting spatialdata points along z-order curve (#476)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-10-30T21:28:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "569117a83c429986936fc53ebadd8403197b349d",
"body": "* WIP: cdn fallbacks\n\n* Fallback for dynamic-importmap\n\n* Version bump",
"is_bot": false,
"headline": "JS import fallbacks (#482)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-10-29T17:13:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cd044c9eff4d1a1991fb08a14a238feb59457e51",
"body": "* Fix bug\n\n* Update version",
"is_bot": false,
"headline": "Fix local serving of spatialdata.zarr.zip (#479)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-10-15T12:34:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "03f8e60a4023e4a85b0272eae703a013f63cb7b1",
"body": "* Support obs_points_path in SpatialDataWrapper\n\n* Lint",
"is_bot": false,
"headline": "Support obs_points_path in SpatialDataWrapper (#478)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-10-13T17:56:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bac58e309c2d22fab9a1671e7c253828f69fbd7e",
"body": "* Add server_host param\n\n* Update pyproject.toml",
"is_bot": false,
"headline": "Add server_host param (#475)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-08-27T15:40:42Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "09eb63f905d061ce3d1d5409d182c51cd67f6029",
"body": "* Update\n\n* Version",
"is_bot": false,
"headline": "Update JS version. Update needs_bigtiff check. (#472)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-08-21T20:58:29Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "beff3da3cc7b8792aa8c21d07b1525cd7aff44d7",
"body": null,
"is_bot": false,
"headline": "Bumped version (#471)",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2025-08-13T22:42:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "240a22bf0952706602f7256da8042f1f7013794b",
"body": null,
"is_bot": false,
"headline": "Create devcontainer.json (#467)",
"author_name": "Fabian Rost",
"author_login": "fbnrst",
"committed_at": "2025-08-11T17:26:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5aa7412e7ec57d1c71b8ae3e2a007e2857a50e9a",
"body": "* Updated version and added zip support\n\n* Wrapper changes added\n\n* Version update in Widget",
"is_bot": false,
"headline": "Updated version and added zip support (#464)",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2025-08-06T16:55:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a6bd970cc7d13c3faba912c01cb870a4e5c17418",
"body": "* Add nb\n\n* Add visium HD nb\n\n* Update VitessceWidget docs\n\n* Lint\n\n* Docs\n\n* Update marimo nb\n\n* Version",
"is_bot": false,
"headline": "Add Visium HD nb (#463)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-08-05T20:29:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2196ac1bca51c2f1fdd727c0befef775ef4a5d0f",
"body": null,
"is_bot": false,
"headline": "Bump js version (#462)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-07-29T13:51:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b78b7c1a95444c371264aa78c6552d727a128db6",
"body": null,
"is_bot": false,
"headline": "Version bump (#461)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-07-25T19:07:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "171d736bb60ef926af6e6fd0ea2a03080388b950",
"body": "* Update SpatialDataWrapper. Bump js version\n\n* Update spatialdata notebooks\n\n* Lint\n\n* Bump js version",
"is_bot": false,
"headline": "Upgrade JS package version. Update SpatialDataWrapper class (#460)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-07-25T15:37:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "037a60f015ddfb4b7a0a6d6368a0777c1b41afa5",
"body": "* Add another spatialdata example notebook\n\n* Update nb",
"is_bot": false,
"headline": "Add another spatialdata example notebook (#458)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-07-16T01:21:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3a5cfda0c412eaee8d9fe1fa7841fea5e7491a0f",
"body": "* Version bump\n\n* Lint",
"is_bot": false,
"headline": "Version bump (#457)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-07-16T01:06:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ac3454cc542d867f7726585d4bc3b72bbf790a9e",
"body": "* Updaed vitessce version\n\n* Added uv.lock",
"is_bot": false,
"headline": "Updaed vitessce version (#456)",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2025-07-15T17:30:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "81794c2c628d780eba5b1aaa53be6e9f720bd7e3",
"body": "* WIP: nb for example from tmt\n\n* Use remote data",
"is_bot": false,
"headline": "Notebook for MERFISH example stored via SpatialData (#455)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-07-14T17:03:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "532cbfa110148656a2b068f03061442fe886f099",
"body": null,
"is_bot": false,
"headline": "Update kpmp-2023 nb (#454)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-07-11T21:14:24Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6cbdedf870dba899dff67c8992776fdfebe43f06",
"body": "* Fixed path in the images array\n\n* U[dated version",
"is_bot": false,
"headline": "Fixed path in the images array (#453)",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2025-07-10T20:55:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ac8ad7444f28e9eb675271d017f4f0c8b837779a",
"body": "* Add notebook. Upgrade js pkg version. Add support for obsFeatureColumns in anndata wrapper\n\n* Bump version\n\n* Lint",
"is_bot": false,
"headline": "Quality metric example notebook (#449)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-07-03T13:49:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8fbb0f94d7cb0a465d3dfc13319d08184aa315a0",
"body": "* Add notebook\n\n* Fix tesT",
"is_bot": false,
"headline": "Add example notebook with AnnData object and image (#447)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-07-02T20:47:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "adee7487fc4e483238b809c7db030cb19e90a834",
"body": null,
"is_bot": false,
"headline": "Reproduce KPMP example using spatialdata object (#442)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-06-25T21:14:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2542d0a0a204b5f6ddf37df8446d2396db249dba",
"body": null,
"is_bot": false,
"headline": "WASM (#445)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-06-23T17:52:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cfbf4c53e73be7464cca63ffef43cc1e21dfefb2",
"body": "* Limit dependencies\n\n* Move imports\n\n* Space",
"is_bot": false,
"headline": "Limit dependencies (#444)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-06-23T15:03:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "263dccf9b839d617f2e3cc25be761796f9b4e18d",
"body": null,
"is_bot": false,
"headline": "Upgrade js (#443)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-06-23T14:34:38Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "227afd47c537ed04034a02e2c408208ce5aa620a",
"body": "* Add test for marimo html export\n\n* Extras",
"is_bot": false,
"headline": "Add test for marimo html export (#439)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-06-05T15:52:12Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ab490cce5cc6336e261a2b387623d491a7ade1f1",
"body": null,
"is_bot": false,
"headline": "Remove parameter from vc.widget (#438)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-06-05T14:13:24Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6bb8c7b6365cb60b8a0d372e36013d1031663e56",
"body": "* WIP\n\n* Add marimo nb",
"is_bot": false,
"headline": "Notebook which demonstrates neuroglancer view (#437)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-06-05T14:01:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b84155a93439a57957c75a04f21ef57d7cb8f7d6",
"body": "* Added tests\n\n* Version update\n\n* Version update\n\n* Linting\n\n* Used is_zip as param\n\n* Specified is_zip as true\n\n* Fixed is_zip check",
"is_bot": false,
"headline": "Tkakar/cat-1250 add zip zarr support (#436)",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2025-06-05T13:06:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b5fae09cf501e28d46fb7ca6a7a7d6326080aede",
"body": "* Upgrade/loosen dependencies and add invoke_batched parameter\n\n* Lint; Fix tests\n\n* Changes for marimo\n\n* Version\n\n* Uv.lock\n\n* Version",
"is_bot": false,
"headline": "Upgrade/loosen dependencies and add invoke_batched parameter (#435)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-06-02T20:14:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a4597c2134a7f7c2f16562b52c8433e2407ce580",
"body": "* Updated vitessce-js version\n\n* Added uv.lock",
"is_bot": false,
"headline": "Tkakar/cat 1265 update vitessce (#429)",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2025-05-16T15:01:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "88d6d8511bb7062f5c06944d4b20ad94b4f2d64c",
"body": "* Add notebooks to docs\n\n* Update nb titles",
"is_bot": false,
"headline": "Add notebooks to docs (#426)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-15T01:25:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "28f0e383ed7a7e6b318124fdd8c351993f5b88b6",
"body": "* Add playwright tests\n\n* Update\n\n* Update\n\n* Update\n\n* Update\n\n* Update",
"is_bot": false,
"headline": "Add playwright tests (#425)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-14T15:41:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e61fce9003dda92afc947b10ac27d0b31e843456",
"body": "* Updated url for options object\n\n* Add if statements and isAbsoluteUrl function\n\n* Update if statement\n\n---------\n\nCo-authored-by: Mark Keller <7525285+keller-mark@users.noreply.github.com>",
"is_bot": false,
"headline": "Updated url for options object (#424)",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2025-05-13T22:48:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1ecdb399ef25e4e1d7072abc1f50a421c2e1c485",
"body": null,
"is_bot": false,
"headline": "Prevent double url prefixing (#423)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-12T23:39:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "24501e8f42ffec77f1b5162f72240eb8993a250c",
"body": "* Fix bug\n\n* Revert let back to const",
"is_bot": false,
"headline": "Fix workspaces proxying bug: still need jupyter_server_proxy (#422)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-12T18:18:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "05d925e6800ec18b208b73d5409fadb93a0b702f",
"body": null,
"is_bot": false,
"headline": "Update pyproject.toml (#421)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-12T16:29:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8650b30d72837df5620e682cf070b62c7490bb92",
"body": "* Updated prependbaseUrl\n\n* Adjusted baseURL for local files\n\n* Linting\n\n* Update url modification function\n\n* Revert usage of current_port\n\n* Lint\n\n---------\n\nCo-authored-by: Mark Keller <7525285+keller-mark@users.noreply.github.com>",
"is_bot": false,
"headline": "Tkakar/cat 1261 fix issue 419 (#420)",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2025-05-12T16:25:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "560c63d5bbbdc732edf5ada068fbc9a7d45d6940",
"body": null,
"is_bot": false,
"headline": "Update coordination in spatialdata configuration (#418)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-07T19:46:47Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8dafa7d89e91857ce7bde72a50588469ae00f1e7",
"body": "* page_mode and page_esm params\n\n* Update\n\n* Fix bug\n\n* Linting\n\n* Update js version\n\n* Add pagemode notebook\n\n* Update",
"is_bot": false,
"headline": "page_mode and page_esm params (#355)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-07T15:28:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "084b9bf0d92ced7a8538761848661c2dcaa22149",
"body": null,
"is_bot": false,
"headline": "Update (#417)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-07T13:04:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "87a825757963f16ac4786dbdbbade21f21e3001b",
"body": null,
"is_bot": false,
"headline": "Update pyproject.toml (#416)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-05T17:08:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b5d60020ba4f7cd11f725cf261e9e76f2ad1ffcc",
"body": "* Fix bugs\n\n* Update",
"is_bot": false,
"headline": "Fix local filepath access, update dependency ranges (#414)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-04T13:30:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c128b916cf4cf13cfbfa66648cac46fa23a9e8d6",
"body": null,
"is_bot": false,
"headline": "Update README.md (#415)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-04T13:30:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "969157ac2ce878c24a7224c00f607df3757fb028",
"body": null,
"is_bot": false,
"headline": "Update pyproject.toml (#413)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-04-22T23:28:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bfe1bde5eaed1b9ad644d75a1948695482ff3a4f",
"body": "* Batching for zarr get requests\n\n* Lint",
"is_bot": false,
"headline": "Batching for zarr get requests (#412)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-04-22T20:05:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d0cf33fcace1a022d7c562613980d61d33ba57c3",
"body": "* Update\n\n* Version bump",
"is_bot": false,
"headline": "Update github actions for deploy workflow (#410)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-04-22T16:20:33Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6177a5ec57ac0de5e71f59c73e31caac35221b2c",
"body": "* Pin dependencies for zarr. Update spatialdata-blobs notebook\n\n* Update\n\n* esbuild_py to oxc_py",
"is_bot": false,
"headline": "More deps (#409)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-04-22T16:16:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f3e77844c24f932b3dd0595504ebbd70a249bfc1",
"body": "* Pin dependencies for zarr. Update spatialdata-blobs notebook\n\n* Update",
"is_bot": false,
"headline": "Pin dependencies for zarr. Update spatialdata-blobs notebook (#408)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-04-22T16:07:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e1a8fa110bc881624346412fe3f4ae084b33bcc9",
"body": "* WIP: add prefer_local option\n\n* Update\n\n* Add spatialdata notebook\n\n* Lint\n\n* WIP: spatialdata_mouseliver notebook\n\n* Update notebook",
"is_bot": false,
"headline": "Use local artifact data for `vc.widget` when possible (#402)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-04-22T16:06:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "424ed66555caeb16d87b448ad8a5d3ff0c9c75ae",
"body": null,
"is_bot": false,
"headline": "add notebook (#399)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-01-17T14:01:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "36f1e50eba0a9eef3d86131be5070d139bba6525",
"body": "* Fix bug\r\n\r\n* Lint",
"is_bot": false,
"headline": "Fix spatialdata sdata_store bug (#398)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-01-14T21:32:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "823e00b34739108f17ac280653fb3019eff5d870",
"body": null,
"is_bot": false,
"headline": "Fix spatialdata configuration (#396)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-12-18T17:19:37Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "94193c0e20af448c6889b610dc9f9d82a6eec164",
"body": null,
"is_bot": false,
"headline": "Update pyproject yml (#393)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-11-27T22:27:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4496e749ffab32058740a55523d04a4097880f77",
"body": "…(#392)\n\n* Added support to accept split param in hconcat and vconcat functions\r\n\r\n* Add assertion\r\n\r\n* Add test and ensure int values\r\n\r\n* Linting\r\n\r\n---------\r\n\r\nCo-authored-by: Mark Keller <7525285+keller-mark@users.noreply.github.com>",
"is_bot": false,
"headline": "Added support to accept split param in hconcat and vconcat functions …",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2024-11-27T22:07:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fcc6ab1d5455aa814d15bc9d56814c5e04d767bb",
"body": null,
"is_bot": false,
"headline": "Add blobs notebook for image rendering (#387)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-11-27T21:45:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a19bea9ed6ef8e7f036199fcb45d6aeedfce2191",
"body": "* Conda to uv\r\n\r\n* Update flake8 command\r\n\r\n* Update",
"is_bot": false,
"headline": "Conda to uv (#390)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-11-27T21:44:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "83fa4bbfecc595f7db175322ace2e443742e0840",
"body": null,
"is_bot": false,
"headline": "Add JsonWrapper class (#386)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-11-04T17:19:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "843a638224ebac0f592a5429c04a988c57f59eae",
"body": "* Move spatialdata dependency to optional\r\n\r\n* Update spatialdata notebook\r\n\r\n* Version",
"is_bot": false,
"headline": "Move spatialdata dependency to dev (#384)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-10-28T13:45:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "390ddbb866f27d1283cd3a95e72d2eab3f4aaf14",
"body": null,
"is_bot": false,
"headline": "Switch to HIDIVE Lab name (#383)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-10-28T13:39:38Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cd5b9398f74707cfc009b72c47dc5eac5ce2877a",
"body": "* (refactor): separate out schema creation\r\n\r\n* (feat): initial pass at spatial data\r\n\r\n* (feat): working notebook minus spots (maybe a vitessce bug?)\r\n\r\n* (fix): try to get spots to appear\r\n\r\n* (chore): comment out other stuff to make widget show more\r\n\r\n* Fix visium config\r\n\r\n* (feat): firstt pass\n[…]\natial data2 (#375)\r\n\r\n* Try again\r\n\r\n* Fix bugs\r\n\r\n* Lint\r\n\r\n* Update\r\n\r\n* Omit\r\n\r\n* Add test\r\n\r\n* JS version\r\n\r\n* Fix spatialdata nb\r\n\r\n---------\r\n\r\nCo-authored-by: ilan-gold <ilanbassgold@gmail.com>",
"is_bot": false,
"headline": "SpatialDataWrapper (#378)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-10-15T18:18:05Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "5da19a8d428663dc95756e899ee40fbab2f4c3ad",
"body": "* (refactor): separate out schema creation\r\n\r\n* (feat): initial pass at spatial data\r\n\r\n* (feat): working notebook minus spots (maybe a vitessce bug?)\r\n\r\n* (fix): try to get spots to appear\r\n\r\n* (chore): comment out other stuff to make widget show more\r\n\r\n* Fix visium config\r\n\r\n* (feat): firstt pass\n[…]\ntoml\r\n\r\n* Keller mark/spatial data2 (#375)\r\n\r\n* Try again\r\n\r\n* Fix bugs\r\n\r\n* Lint\r\n\r\n* Update\r\n\r\n* Omit\r\n\r\n* Add test\r\n\r\n* JS version\r\n\r\n---------\r\n\r\nCo-authored-by: ilan-gold <ilanbassgold@gmail.com>",
"is_bot": false,
"headline": "SpatialDataWrapper v2 (#373)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-10-15T13:58:58Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "bc5e21c4f5ec8015207a5b90ac3f2a83caec85d5",
"body": "…stores (#371)\n\n* Register artifacts in wrapper constructors\r\n\r\n* Docs\r\n\r\n* Add test\r\n\r\n* Update\r\n\r\n* Version bump\r\n\r\n* Lint\r\n\r\n* Update is_remote logic\r\n\r\n* Update",
"is_bot": false,
"headline": "Allow passing artifacts as data in addition to paths, urls, and zarr …",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-10-04T19:29:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6bac2c256c7acb03192c6d1255513323c28c1799",
"body": "* Update exports for createPlugins\r\n\r\n* Version",
"is_bot": false,
"headline": "Keller mark/more exports (#370)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-10-02T15:39:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f267084ee22de69addd2cd9a70725d15d303b25b",
"body": "* Added utility functions to update and remove a view\r\n\r\n* Added tests for the utility functions\r\n\r\n* Refactored to multiple functions",
"is_bot": false,
"headline": "Added utility functions to update and remove a view (#368)",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2024-10-02T13:16:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "dc021ebe57fa86be20830ebc8a19c2ed8446254c",
"body": null,
"is_bot": false,
"headline": "Add notebook (#369)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-10-02T12:43:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b02d7670bb6c07c8d7503a8b34bc26287af8f6fd",
"body": null,
"is_bot": false,
"headline": "Fix bug (#367)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-09-19T19:00:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c48fdd8fc9cd0ab1ade5158b90c9c13544a8acbd",
"body": "* Fix binder issue\r\n\r\n* bump version",
"is_bot": false,
"headline": "Fix binder example (#363)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-09-11T20:10:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "94501cc83206be97066ef9fc092d73982e211842",
"body": "* Update AnnDataWrapper to support h5ad files with ref spec json\r\n\r\n* Lint\r\n\r\n* Fix tests\r\n\r\n* Update",
"is_bot": false,
"headline": "Support for H5AD-based AnnData in AnnDataWrapper (#361)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-09-09T12:53:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "06a04e7dfdb83965722790f5599389074de12143",
"body": "* Misc changes\r\n\r\n* Bigtiff helper for rgb\r\n\r\n* Remove unused import\r\n\r\n* Lint\r\n\r\n* Unused variables",
"is_bot": false,
"headline": "Misc: Spatial-query, kerchunk, and OME helper functions (#360)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-08-31T22:35:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "55b3f57a681e82cedae7a67e2c75abd70d49f4b6",
"body": "…)) (#357)\n\n* Unit test for anndata wrapper + to_dict\r\n\r\n* linting",
"is_bot": false,
"headline": "Unit test for to_dict output following .add_object(AnnDataWrapper(...…",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-08-31T19:37:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bc7b3537b638fef893014365894257d0f5e5caee",
"body": "* Spatial-Query plugin and example notebook\r\n\r\n* Version\r\n\r\n* Widget plugins module\r\n\r\n* Update\r\n\r\n* Linting\r\n\r\n* Lint\r\n\r\n* Update comments\r\n\r\n* Update docs\r\n\r\n* Update",
"is_bot": false,
"headline": "Plugin for SpatialQuery (#354)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-08-02T13:27:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c88eb372fbbc8939ffadf1c5048e1a0c35b55b39",
"body": null,
"is_bot": false,
"headline": "Update fill_template.py (#353)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-07-29T13:55:19Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2e36cb27784c501502cec39823643e5aec371b5e",
"body": "* WIP: class to encapsulate widget logic\r\n\r\n* Potentially working widget things\r\n\r\n* Example of chat plugin\r\n\r\n* Lint\r\n\r\n* Update\r\n\r\n* Update",
"is_bot": false,
"headline": "Plugin class (#350)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-07-24T19:02:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "31bd2ccad537fcc546f285417b10dd31cb0e4e09",
"body": null,
"is_bot": false,
"headline": "NickAkhmetov/Copy `requestInit` when using `from_dict` (#352)",
"author_name": "Nikolay Akhmetov",
"author_login": "NickAkhmetov",
"committed_at": "2024-07-19T17:09:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5ae1daea28ce8d0d37158ecc7f3c89f68116479e",
"body": "* Cap `numpy` under v2\r\n\r\n* bump patch version",
"is_bot": false,
"headline": "NickAkhmetov/Cap `numpy` under v2 (#349)",
"author_name": "Nikolay Akhmetov",
"author_login": "NickAkhmetov",
"committed_at": "2024-06-17T17:34:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b07a72a1035023948807e23130edca77dbda9dfe",
"body": "* Create module for plugin JS\r\n\r\n* Add docs\r\n\r\n* Lint\r\n\r\n* Ignore unused imports",
"is_bot": false,
"headline": "Create module for plugin JS (#337)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-05-15T15:51:38Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b2e312093351dd92554ef1159df55a018a486ab9",
"body": null,
"is_bot": false,
"headline": "(chore): supported python versions (#342)",
"author_name": "Ilan Gold",
"author_login": "ilan-gold",
"committed_at": "2024-05-06T14:03:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3adbad4687f8b4b46a35607b56381aa4c7bb455d",
"body": "…ta on localhost (#329)\n\n* WIP: zarr get using anywidget.experimental command/invoke works\r\n\r\n* Unused zarr js import\r\n\r\n* Support local store\r\n\r\n* Lint\r\n\r\n* Cleanup\r\n\r\n* Lint\r\n\r\n* Bump version",
"is_bot": false,
"headline": "Use anywidget-based IPC for zarr gets which do not require serving da…",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-05-01T21:48:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "834b15f88753db3c882d45866310b0b53189092a",
"body": null,
"is_bot": false,
"headline": "Bump to v3.2.5 (#336)",
"author_name": "Nikolay Akhmetov",
"author_login": "NickAkhmetov",
"committed_at": "2024-04-16T20:19:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8c19c4c57631c253c25ace420bc0b2fcbc4bf973",
"body": null,
"is_bot": false,
"headline": "NickAkhmetov/Add `requestInit` param to `MultivecZarrWrapper` (#335)",
"author_name": "Nikolay Akhmetov",
"author_login": "NickAkhmetov",
"committed_at": "2024-04-15T16:12:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a74c8ad8049a68240020fc3c0600bb65e8ae03d1",
"body": null,
"is_bot": false,
"headline": "Bump version (#332)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-04-03T09:38:37Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a3580679ce13aea50c9aa1a2a2a9ab479c84f34e",
"body": "* Versions of anndata and anywidget\r\n\r\n* Update test\r\n\r\n* Revert numeric changes",
"is_bot": false,
"headline": "Versions of anndata, anywidget, JS package (#328)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-03-13T16:39:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3810797239ae651024431fbb1a2715a46a633f02",
"body": "* Update adata_to_multivec\r\n\r\n* Update pyproject.toml\r\n\r\n* Update multivec.py",
"is_bot": false,
"headline": "Update adata_to_multivec (#326)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-03-13T14:28:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "989af83a56df72cf0b5994d6f387a92b6a327842",
"body": "* Support scope_prefix parameter in link_views_by_dict\r\n\r\n* Lint\r\n\r\n* Remove unused import\r\n\r\n* Exports\r\n\r\n* Coverage\r\n\r\n* Version bump",
"is_bot": false,
"headline": "Support scope_prefix parameter in link_views_by_dict (#325)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-02-29T19:20:59Z",
"body_truncated": false,
"is_coding_agent": false
}
],
"releases_count": 1,
"commits_last_year": 26,
"latest_release_at": "2024-05-24T18:01:04Z",
"latest_release_tag": "v3.2.6",
"releases_from_tags": false,
"days_since_last_push": 45,
"active_weeks_last_year": 17,
"days_since_latest_release": 792,
"mean_days_between_releases": null
},
"community": {
"has_readme": true,
"has_license": true,
"has_description": true,
"has_contributing": false,
"health_percentage": 37,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"ecosystem": {
"packages": [
{
"name": "vitessce",
"exists": true,
"license": null,
"keywords": [
"ipython",
"jupyter",
"widgets",
"Development Status :: 4 - Beta",
"Framework :: IPython",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3.9",
"Topic :: Multimedia :: Graphics"
],
"ecosystem": "pypi",
"matches_repo": true,
"registry_url": "https://pypi.org/project/vitessce/",
"is_deprecated": false,
"latest_version": "3.9.2",
"repository_url": "https://github.com/vitessce/vitessce-python",
"versions_count": 95,
"total_downloads": null,
"dependents_count": null,
"deprecation_note": null,
"maintainers_count": null,
"monthly_downloads": null,
"first_published_at": "2020-11-20T01:23:24.016057Z",
"latest_published_at": "2026-06-04T01:25:56.729313Z",
"latest_version_yanked": null,
"days_since_latest_publish": 52
}
]
},
"popularity": {
"forks": 12,
"stars": 67,
"watchers": 5,
"fork_history": {
"days": [
{
"date": "2021-01-05",
"count": 1
},
{
"date": "2021-12-14",
"count": 1
},
{
"date": "2022-06-06",
"count": 1
},
{
"date": "2022-09-22",
"count": 1
},
{
"date": "2023-09-27",
"count": 1
},
{
"date": "2024-04-02",
"count": 1
},
{
"date": "2024-08-20",
"count": 1
},
{
"date": "2025-02-11",
"count": 1
},
{
"date": "2025-08-09",
"count": 1
},
{
"date": "2025-10-13",
"count": 1
},
{
"date": "2025-11-13",
"count": 1
},
{
"date": "2026-03-02",
"count": 1
}
],
"complete": true,
"collected": 12,
"total_forks": 12
},
"star_history": null,
"open_issues_and_prs": 118
},
"ai_readiness": {
"has_nix": false,
"example_dirs": [
"demos",
"notebooks"
],
"has_llms_txt": false,
"has_dockerfile": false,
"has_mcp_signal": false,
"bootstrap_files": [
"Makefile"
],
"api_schema_files": [],
"has_devcontainer": true,
"typecheck_configs": [],
"toolchain_manifests": [],
"largest_source_bytes": 83101,
"source_files_sampled": 61,
"oversized_source_files": 2,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"dependencies": {
"manifests": [
"pyproject.toml",
"setup.cfg",
"setup.py",
"tests-widget/package.json"
],
"advisories": {
"error": null,
"scope": "published_package",
"source": "osv",
"findings": [],
"collected": true,
"malicious": [],
"truncated": false,
"by_severity": {},
"advisory_count": 0,
"affected_count": 0,
"assessed_count": 18,
"malicious_count": 0,
"assessed_package": "pypi:vitessce@3.9.2",
"unassessed_count": 0,
"direct_affected_count": 0
},
"ecosystems": [
"npm",
"pypi"
],
"dependencies": [
{
"name": "scipy",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">=1.2.1"
},
{
"name": "pandas",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">=1.1.2"
},
{
"name": "black",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">=21.11b1"
},
{
"name": "numpy",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">=1.21.2"
},
{
"name": "zarr",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">=3.0.0"
}
],
"all_dependencies": {
"error": "GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository",
"source": null,
"packages": [],
"collected": false,
"truncated": false,
"total_count": null,
"direct_count": null,
"indirect_count": null
}
},
"maintainership": {
"issues": {
"open_prs": 9,
"merged_prs": 241,
"open_issues": 109,
"closed_ratio": 0.505,
"closed_issues": 111,
"closed_unmerged_prs": 21
},
"bus_factor": 1,
"bot_contributors": 0,
"top_contributors": [
{
"type": "User",
"login": "keller-mark",
"commits": 412,
"avatar_url": "https://avatars.githubusercontent.com/u/7525285?v=4"
},
{
"type": "User",
"login": "mccalluc",
"commits": 43,
"avatar_url": "https://avatars.githubusercontent.com/u/730388?v=4"
},
{
"type": "User",
"login": "ilan-gold",
"commits": 25,
"avatar_url": "https://avatars.githubusercontent.com/u/43999641?v=4"
},
{
"type": "User",
"login": "ivababukova",
"commits": 21,
"avatar_url": "https://avatars.githubusercontent.com/u/65414651?v=4"
},
{
"type": "User",
"login": "tkakar",
"commits": 10,
"avatar_url": "https://avatars.githubusercontent.com/u/14091615?v=4"
},
{
"type": "User",
"login": "NickAkhmetov",
"commits": 9,
"avatar_url": "https://avatars.githubusercontent.com/u/19957804?v=4"
},
{
"type": "User",
"login": "fbnrst",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/7300030?v=4"
},
{
"type": "User",
"login": "LucaMarconato",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/2664412?v=4"
},
{
"type": "User",
"login": "sehilyi",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/9922882?v=4"
},
{
"type": "User",
"login": "manzt",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/24403730?v=4"
}
],
"contributors_sampled": 10,
"top_contributor_share": 0.786
},
"quality_signals": {
"has_ci": true,
"has_tests": true,
"ci_workflows": [
"deploy.yml",
"docs.yml",
"lint.yml",
"test.yml",
"test_demos.yml",
"test_widget.yml"
],
"has_docs_dir": true,
"linter_configs": [],
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"security_signals": {
"lockfiles": [
"pnpm-lock.yaml",
"uv.lock"
],
"scorecard": {
"checks": [
{
"name": "Binary-Artifacts",
"score": 10,
"reason": "no binaries found in the repo",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
},
{
"name": "Branch-Protection",
"score": null,
"reason": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
},
{
"name": "CI-Tests",
"score": 10,
"reason": "30 out of 30 merged PRs checked by a CI test -- score normalized to 10",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
},
{
"name": "CII-Best-Practices",
"score": 0,
"reason": "no effort to earn an OpenSSF best practices badge detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
},
{
"name": "Code-Review",
"score": 2,
"reason": "Found 6/30 approved changesets -- score normalized to 2",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
},
{
"name": "Contributors",
"score": 10,
"reason": "project has 12 contributing companies or organizations",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
},
{
"name": "Dangerous-Workflow",
"score": 10,
"reason": "no dangerous workflow patterns detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
},
{
"name": "Dependency-Update-Tool",
"score": 0,
"reason": "no update tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
},
{
"name": "Fuzzing",
"score": 0,
"reason": "project is not fuzzed",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
},
{
"name": "License",
"score": 10,
"reason": "license file detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
},
{
"name": "Maintained",
"score": 6,
"reason": "6 commit(s) and 2 issue activity found in the last 90 days -- score normalized to 6",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
},
{
"name": "Packaging",
"score": 10,
"reason": "packaging workflow detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
},
{
"name": "Pinned-Dependencies",
"score": 0,
"reason": "dependency not pinned by hash detected -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
},
{
"name": "SAST",
"score": 0,
"reason": "SAST tool is not run on all commits -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
},
{
"name": "Security-Policy",
"score": 0,
"reason": "security policy file not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
},
{
"name": "Signed-Releases",
"score": null,
"reason": "no releases found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
},
{
"name": "Token-Permissions",
"score": 0,
"reason": "detected GitHub workflow tokens with excessive permissions",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
},
{
"name": "Vulnerabilities",
"score": 0,
"reason": "170 existing vulnerabilities detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
}
],
"commit": "7e7bcee1e090e2e3a4833df542ceff2373ed8a7a",
"ran_at": "2026-07-26T01:53:55Z",
"aggregate_score": 4,
"scorecard_version": "v5.5.0"
},
"has_codeql_workflow": false,
"has_security_policy": false,
"has_dependabot_config": false
},
"contribution_flow": {
"collected": true,
"ci_last_run_at": "2026-06-10T20:07:26Z",
"oldest_open_prs": [
{
"number": 224,
"created_at": "2023-01-17T13:12:21Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 277,
"created_at": "2023-09-03T20:30:33Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 304,
"created_at": "2023-10-13T06:38:52Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 307,
"created_at": "2023-11-20T21:44:57Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 314,
"created_at": "2024-01-22T19:19:59Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 321,
"created_at": "2024-02-15T20:45:38Z",
"last_comment_at": "2024-02-16T16:17:32Z",
"last_comment_author": "keller-mark"
},
{
"number": 330,
"created_at": "2024-04-02T16:18:24Z",
"last_comment_at": "2024-05-07T15:14:27Z",
"last_comment_author": "ilan-gold"
},
{
"number": 341,
"created_at": "2024-05-06T09:33:12Z",
"last_comment_at": "2024-05-10T09:01:41Z",
"last_comment_author": "ilan-gold"
},
{
"number": 466,
"created_at": "2025-08-08T14:42:33Z",
"last_comment_at": null,
"last_comment_author": null
}
],
"last_merged_pr_at": "2026-06-10T20:06:06Z",
"ci_last_conclusion": "SUCCESS",
"oldest_open_issues": [
{
"number": 17,
"created_at": "2020-12-09T20:22:04Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 279,
"created_at": "2020-12-31T19:55:18Z",
"last_comment_at": "2020-12-31T20:07:51Z",
"last_comment_author": "keller-mark"
},
{
"number": 280,
"created_at": "2020-12-31T19:56:09Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 30,
"created_at": "2021-01-04T20:20:51Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 34,
"created_at": "2021-01-05T18:54:06Z",
"last_comment_at": "2021-01-05T19:07:43Z",
"last_comment_author": "sehilyi"
},
{
"number": 35,
"created_at": "2021-01-05T19:07:46Z",
"last_comment_at": "2021-01-05T19:10:09Z",
"last_comment_author": "keller-mark"
},
{
"number": 41,
"created_at": "2021-01-22T16:13:11Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 281,
"created_at": "2021-02-04T17:07:52Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 50,
"created_at": "2021-02-24T20:54:10Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 52,
"created_at": "2021-03-04T17:04:17Z",
"last_comment_at": "2021-03-04T17:09:29Z",
"last_comment_author": "keller-mark"
},
{
"number": 58,
"created_at": "2021-03-31T19:16:00Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 61,
"created_at": "2021-05-08T04:49:13Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 64,
"created_at": "2021-05-30T16:21:12Z",
"last_comment_at": "2021-06-02T18:00:05Z",
"last_comment_author": "ilan-gold"
},
{
"number": 68,
"created_at": "2021-06-04T19:18:20Z",
"last_comment_at": "2021-06-08T17:07:12Z",
"last_comment_author": "ilan-gold"
},
{
"number": 75,
"created_at": "2021-06-15T14:29:28Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 76,
"created_at": "2021-06-15T14:56:20Z",
"last_comment_at": "2021-06-15T22:27:40Z",
"last_comment_author": "keller-mark"
},
{
"number": 77,
"created_at": "2021-06-15T15:48:42Z",
"last_comment_at": "2021-06-15T16:55:02Z",
"last_comment_author": "keller-mark"
},
{
"number": 78,
"created_at": "2021-06-15T15:55:47Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 81,
"created_at": "2021-06-15T17:55:33Z",
"last_comment_at": "2021-06-15T18:06:20Z",
"last_comment_author": "keller-mark"
},
{
"number": 91,
"created_at": "2021-07-27T16:16:20Z",
"last_comment_at": null,
"last_comment_author": null
}
]
}
},
"config": {
"disabled_metrics": [],
"disabled_categories": [],
"disabled_components": {}
},
"source": {
"url": "https://github.com/vitessce/vitessce-python",
"host": "github.com",
"name": "vitessce-python",
"owner": "vitessce"
},
"metrics": {
"overall": {
"key": "overall",
"band": "moderate",
"name": "Overall health",
"note": null,
"notes": [],
"value": 57,
"inputs": {
"security": 52,
"vitality": 47,
"community": 46,
"governance": 62,
"engineering": 77
},
"components": []
},
"categories": [
{
"key": "vitality",
"band": "at_risk",
"name": "Vitality",
"value": 47,
"weight": 0.22,
"metrics": [
{
"key": "development_activity",
"band": "at_risk",
"name": "Development activity",
"note": null,
"notes": [],
"value": 49,
"inputs": {
"commits_last_year": 26,
"human_commit_share": 1,
"days_since_last_push": 45,
"active_weeks_last_year": 17
},
"components": [
{
"key": "push_recency",
"name": "Push recency",
"detail": "last push 45 days ago",
"points": 18,
"status": "partial",
"details": [
{
"code": "push_recency",
"params": {
"days": 45
}
}
],
"max_points": 36
},
{
"key": "commit_cadence",
"name": "Commit cadence",
"detail": "17/52 weeks with commits",
"points": 11.8,
"status": "partial",
"details": [
{
"code": "commit_cadence_weeks",
"params": {
"weeks": 17
}
}
],
"max_points": 36
},
{
"key": "commit_volume",
"name": "Commit volume",
"detail": "26 commits in the last year",
"points": 12.9,
"status": "partial",
"details": [
{
"code": "commits_last_year",
"params": {
"count": 26
}
}
],
"max_points": 18
},
{
"key": "openssf_scorecard_maintained",
"name": "OpenSSF Scorecard: Maintained",
"detail": "6 commit(s) and 2 issue activity found in the last 90 days -- score normalized to 6",
"points": 6,
"status": "partial",
"details": [],
"max_points": 10
}
]
},
{
"key": "release_discipline",
"band": "at_risk",
"name": "Release discipline",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 44,
"inputs": {
"releases_count": 1,
"latest_release_tag": "v3.2.6",
"releases_from_tags": false,
"days_since_latest_release": 792,
"mean_days_between_releases": null
},
"components": [
{
"key": "ships_releases",
"name": "Ships releases",
"detail": "1 releases published",
"points": 27,
"status": "met",
"details": [
{
"code": "releases_published",
"params": {
"count": 1
}
}
],
"max_points": 27
},
{
"key": "release_recency",
"name": "Release recency",
"detail": "latest release 792 days ago",
"points": 0,
"status": "missed",
"details": [
{
"code": "release_recency",
"params": {
"days": 792
}
}
],
"max_points": 36
},
{
"key": "release_cadence",
"name": "Release cadence",
"detail": "cadence unknown (single release)",
"points": 12.6,
"status": "partial",
"details": [
{
"code": "release_cadence_unknown",
"params": {}
}
],
"max_points": 27
},
{
"key": "openssf_scorecard_signed_releases",
"name": "OpenSSF Scorecard: Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
}
]
},
{
"key": "abandonment",
"band": "excellent",
"name": "Abandonment",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"cap": null,
"state": "maintained",
"guards": [],
"signals": [],
"red_flag": false,
"multiplier_pct": 100,
"declared_reason": null,
"unverified_reason": null,
"unanswered_open_prs": null,
"unanswered_open_issues": null,
"days_since_last_merged_pr": null,
"days_since_last_human_commit": 45,
"days_since_last_human_commit_is_floor": false
},
"components": [
{
"key": "project_is_still_maintained",
"name": "Project is still maintained",
"detail": "last human commit 45 days ago",
"points": 100,
"status": "met",
"details": [
{
"code": "abandonment_maintained",
"params": {
"days": 45
}
}
],
"max_points": 100
}
]
}
],
"description": "Is the project alive — is code being written and are releases shipping?"
},
{
"key": "community",
"band": "at_risk",
"name": "Community & Adoption",
"value": 46,
"weight": 0.18,
"metrics": [
{
"key": "popularity",
"band": "at_risk",
"name": "Popularity & adoption",
"note": null,
"notes": [],
"value": 42,
"inputs": {
"forks": 12,
"stars": 67,
"watchers": 5,
"growth_state": "unverified",
"growth_factor_pct": 100,
"growth_unverified_reason": "no_history"
},
"components": [
{
"key": "stars",
"name": "Stars",
"detail": "67 stars",
"points": 29.5,
"status": "partial",
"details": [
{
"code": "stars",
"params": {
"count": 67
}
}
],
"max_points": 60
},
{
"key": "forks",
"name": "Forks",
"detail": "12 forks",
"points": 8.7,
"status": "partial",
"details": [
{
"code": "forks",
"params": {
"count": 12
}
}
],
"max_points": 25
},
{
"key": "watchers",
"name": "Watchers",
"detail": "5 watchers",
"points": 3.3,
"status": "partial",
"details": [
{
"code": "watchers",
"params": {
"count": 5
}
}
],
"max_points": 15
}
]
},
{
"key": "community_health",
"band": "moderate",
"name": "Community health",
"note": null,
"notes": [],
"value": 50,
"inputs": {
"has_readme": true,
"has_license": true,
"has_contributing": false,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 22.5,
"status": "met",
"details": [],
"max_points": 22.5
},
{
"key": "license",
"name": "License",
"detail": "recognized license (MIT)",
"points": 22.5,
"status": "met",
"details": [
{
"code": "license_standard",
"params": {}
},
{
"code": "license_spdx",
"params": {
"spdx": "MIT"
}
}
],
"max_points": 22.5
},
{
"key": "contributing_guide",
"name": "CONTRIBUTING guide",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "code_of_conduct",
"name": "Code of conduct",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 13.5
},
{
"key": "issue_template",
"name": "Issue template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.2
},
{
"key": "pr_template",
"name": "PR template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.3
}
]
}
],
"description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
},
{
"key": "governance",
"band": "moderate",
"name": "Sustainability & Governance",
"value": 62,
"weight": 0.24,
"metrics": [
{
"key": "maintainer_resilience",
"band": "at_risk",
"name": "Maintainer resilience (bus factor)",
"note": null,
"notes": [],
"value": 37,
"inputs": {
"bus_factor": 1,
"contributors_sampled": 10,
"top_contributor_share": 0.786
},
"components": [
{
"key": "bus_factor",
"name": "Bus factor",
"detail": "1 contributor(s) cover half of all commits",
"points": 9,
"status": "partial",
"details": [
{
"code": "bus_factor",
"params": {
"count": 1
}
}
],
"max_points": 54
},
{
"key": "commit_distribution",
"name": "Commit distribution",
"detail": "top contributor authored 79% of commits",
"points": 4.8,
"status": "partial",
"details": [
{
"code": "top_contributor_share",
"params": {
"share": 79
}
}
],
"max_points": 22.5
},
{
"key": "contributor_breadth",
"name": "Contributor breadth",
"detail": "10 contributors",
"points": 13.5,
"status": "met",
"details": [
{
"code": "contributors_sampled",
"params": {
"count": 10
}
}
],
"max_points": 13.5
},
{
"key": "openssf_scorecard_contributors",
"name": "OpenSSF Scorecard: Contributors",
"detail": "project has 12 contributing companies or organizations",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "moderate",
"name": "Issue & PR responsiveness",
"note": null,
"notes": [],
"value": 62,
"inputs": {
"merged_prs": 241,
"open_issues": 109,
"closed_issues": 111,
"issue_closed_ratio": 0.505,
"closed_unmerged_prs": 21
},
"components": [
{
"key": "issue_resolution",
"name": "Issue resolution",
"detail": "50% of issues closed",
"points": 23.6,
"status": "partial",
"details": [
{
"code": "issues_closed_share",
"params": {
"share": 50
}
}
],
"max_points": 46.75
},
{
"key": "pr_acceptance",
"name": "PR acceptance",
"detail": "241/262 decided PRs merged",
"points": 35.2,
"status": "partial",
"details": [
{
"code": "decided_prs_merged",
"params": {
"merged": 241,
"decided": 262
}
}
],
"max_points": 38.25
},
{
"key": "openssf_scorecard_code_review",
"name": "OpenSSF Scorecard: Code-Review",
"detail": "Found 6/30 approved changesets -- score normalized to 2",
"points": 3,
"status": "partial",
"details": [],
"max_points": 15
}
]
},
{
"key": "stewardship",
"band": "moderate",
"name": "Ownership & stewardship",
"note": null,
"notes": [],
"value": 61,
"inputs": {
"followers": 33,
"owner_type": "Organization",
"is_verified": null,
"owner_login": "vitessce",
"public_repos": 12,
"account_age_days": 2279
},
"components": [
{
"key": "ownership_backing",
"name": "Ownership backing",
"detail": "organization-owned",
"points": 30,
"status": "met",
"details": [
{
"code": "owner_organization",
"params": {}
}
],
"max_points": 30
},
{
"key": "verified_domain",
"name": "Verified domain",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "owner_reach",
"name": "Owner reach",
"detail": "33 followers of vitessce",
"points": 11,
"status": "partial",
"details": [
{
"code": "owner_followers",
"params": {
"count": 33,
"login": "vitessce"
}
}
],
"max_points": 25
},
{
"key": "track_record",
"name": "Track record",
"detail": "12 public repos, account ~6 yr old",
"points": 20.1,
"status": "partial",
"details": [
{
"code": "public_repos",
"params": {
"count": 12
}
},
{
"code": "account_age_years",
"params": {
"years": 6
}
}
],
"max_points": 25
}
]
},
{
"key": "package_maintenance",
"band": "excellent",
"name": "Package maintenance",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"packages": [
"vitessce"
],
"ecosystems": "pypi",
"any_deprecated": false,
"min_days_since_publish": 52
},
"components": [
{
"key": "published_resolvable",
"name": "Published & resolvable",
"detail": "1 package(s) on pypi",
"points": 25,
"status": "met",
"details": [
{
"code": "packages_published",
"params": {
"count": 1,
"ecosystems": "pypi"
}
}
],
"max_points": 25
},
{
"key": "publish_recency",
"name": "Publish recency",
"detail": "latest publish 52 days ago",
"points": 35,
"status": "met",
"details": [
{
"code": "publish_recency",
"params": {
"days": 52
}
}
],
"max_points": 35
},
{
"key": "version_history",
"name": "Version history",
"detail": "95 published versions",
"points": 20,
"status": "met",
"details": [
{
"code": "published_versions",
"params": {
"count": 95
}
}
],
"max_points": 20
},
{
"key": "not_deprecated",
"name": "Not deprecated",
"detail": "active, not deprecated or yanked",
"points": 20,
"status": "met",
"details": [
{
"code": "package_not_deprecated",
"params": {}
}
],
"max_points": 20
}
]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "good",
"name": "Engineering Quality",
"value": 77,
"weight": 0.2,
"metrics": [
{
"key": "engineering_practices",
"band": "moderate",
"name": "Engineering practices",
"note": null,
"notes": [],
"value": 68,
"inputs": {
"has_ci": true,
"has_tests": true,
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": "6 workflow(s)",
"points": 24,
"status": "met",
"details": [
{
"code": "ci_workflows",
"params": {
"count": 6
}
}
],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 24,
"status": "met",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "30 out of 30 merged PRs checked by a CI test -- score normalized to 10",
"points": 20,
"status": "met",
"details": [],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "excellent",
"name": "Documentation",
"note": null,
"notes": [],
"value": 90,
"inputs": {
"topics": [
"single-cell",
"kharchenkolab",
"data-visualization",
"vitessce",
"ipywidget",
"jupyter-widget",
"jupyterlab-extension",
"hidivelab"
],
"has_wiki": false,
"homepage": "https://python-docs.vitessce.io",
"has_readme": true,
"has_docs_dir": true,
"has_description": true
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 30,
"status": "met",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 25,
"status": "met",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": "https://python-docs.vitessce.io",
"points": 15,
"status": "met",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": "8 topics",
"points": 10,
"status": "met",
"details": [
{
"code": "topics_count",
"params": {
"count": 8
}
}
],
"max_points": 10
},
{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "moderate",
"name": "Security",
"value": 52,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "at_risk",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): Branch-Protection, Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"branch_protection",
"signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 40,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 16,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 2,
"scorecard_aggregate": 4
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "30 out of 30 merged PRs checked by a CI test -- score normalized to 10",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 6/30 approved changesets -- score normalized to 2",
"points": 1.5,
"status": "partial",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 12 contributing companies or organizations",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no dangerous workflow patterns detected",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "no update tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "6 commit(s) and 2 issue activity found in the last 90 days -- score normalized to 6",
"points": 4.5,
"status": "partial",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow detected",
"points": 5,
"status": "met",
"details": [],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "SAST tool is not run on all commits -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "detected GitHub workflow tokens with excessive permissions",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "170 existing vulnerabilities detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "dependency_advisories",
"band": "excellent",
"name": "Dependency advisories",
"note": "Excluded from scoring (no data or not applicable): No advisories left outstanding. Remaining weights renormalized. Matched the pypi:vitessce@3.9.2 runtime dependency closure — what installing the published package pulls in — 18 packages. Reachability is not analyzed.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"no_advisories_left_outstanding"
]
}
},
{
"code": "weights_renormalized",
"params": {}
},
{
"code": "advisories_scope_published",
"params": {
"package": "pypi:vitessce@3.9.2",
"assessed": 18
}
},
{
"code": "advisories_reachability",
"params": {}
}
],
"value": 100,
"inputs": {
"source": "osv",
"advisories": 0,
"affected_packages": 0,
"assessed_packages": 18,
"unassessed_packages": 0,
"affected_by_severity": "none",
"direct_affected_packages": 0
},
"components": [
{
"key": "direct_dependencies_free_of_known_advisories",
"name": "Direct dependencies free of known advisories",
"detail": "no direct dependency carries a known advisory",
"points": 35,
"status": "met",
"details": [
{
"code": "no_direct_advisories",
"params": {}
}
],
"max_points": 35
},
{
"key": "indirect_dependencies_free_of_known_advisories",
"name": "Indirect dependencies free of known advisories",
"detail": "no indirect dependency carries a known advisory",
"points": 25,
"status": "met",
"details": [
{
"code": "no_indirect_advisories",
"params": {}
}
],
"max_points": 25
},
{
"key": "no_advisories_left_outstanding",
"name": "No advisories left outstanding",
"detail": "no advisory carries a publication date",
"points": 0,
"status": "excluded",
"details": [
{
"code": "advisories_no_publication_date",
"params": {}
}
],
"max_points": 40
}
]
},
{
"key": "malicious_dependencies",
"band": "excellent",
"name": "Malicious dependencies",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"source": "osv",
"meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
"packages": [],
"red_flag": false,
"assessed_packages": 18,
"malicious_packages": 0,
"direct_malicious_packages": 0,
"withdrawn_malicious_packages": 0,
"installable_malicious_packages": 0
},
"components": [
{
"key": "no_dependency_reported_as_a_malicious_package",
"name": "No dependency reported as a malicious package",
"detail": "no dependency is reported as a malicious package",
"points": 100,
"status": "met",
"details": [
{
"code": "no_malicious_dependencies",
"params": {}
}
],
"max_points": 100
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "excellent",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"review_only_matches": 0,
"assessed_self_published_locations": 21
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "at_risk",
"name": "AI Readiness",
"value": 46,
"weight": 0,
"metrics": [
{
"key": "ai_agent_context",
"band": "at_risk",
"name": "Agent context & guidance",
"note": null,
"notes": [],
"value": 40,
"inputs": {
"has_llms_txt": false,
"legible_history_share": 0.99,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "legible_commit_history",
"name": "Legible commit history",
"detail": "99 of 100 human commits state their intent (structured subject or explanatory body)",
"points": 40,
"status": "met",
"details": [
{
"code": "legible_history",
"params": {
"legible": 99,
"sampled": 100
}
}
],
"max_points": 40
}
]
},
{
"key": "ai_verify_loop",
"band": "moderate",
"name": "Verify loop (build / test / typecheck)",
"note": null,
"notes": [],
"value": 50,
"inputs": {
"has_nix": false,
"has_tests": true,
"lockfiles": [
"pnpm-lock.yaml",
"uv.lock"
],
"has_dockerfile": false,
"typed_language": false,
"bootstrap_files": [
"Makefile"
],
"has_devcontainer": true,
"has_linter_config": false,
"typecheck_configs": [],
"agent_commit_share": 0,
"toolchain_manifests": [],
"dependency_bot_commit_share": 0
},
"components": [
{
"key": "one_command_bootstrap",
"name": "One-command bootstrap",
"detail": "Makefile",
"points": 18,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "Makefile"
}
}
],
"max_points": 18
},
{
"key": "automated_tests",
"name": "Automated tests",
"detail": null,
"points": 22,
"status": "met",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": "devcontainer, lockfile",
"points": 10,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "devcontainer, lockfile"
}
}
],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "no agent-authored commits among the last 100",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_authored_commits",
"params": {
"sampled": 100
}
}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "no automated dependency updates observed",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_dependency_automation",
"params": {}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "moderate",
"name": "Code legibility for models",
"note": null,
"notes": [],
"value": 53,
"inputs": {
"primary_language": "Python",
"largest_source_bytes": 83101,
"source_files_sampled": 61,
"oversized_source_files": 2
},
"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "Python without a type-check config",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_typecheck_config_language",
"params": {
"language": "Python"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "2/61 source files over 60KB",
"points": 53.2,
"status": "partial",
"details": [
{
"code": "oversized_source_files",
"params": {
"kb": 60,
"sampled": 61,
"oversized": 2
}
}
],
"max_points": 55
}
]
},
{
"key": "ai_interfaces",
"band": "at_risk",
"name": "Machine-readable interfaces",
"note": null,
"notes": [],
"value": 40,
"inputs": {
"example_dirs": [
"demos",
"notebooks"
],
"has_mcp_signal": false,
"api_schema_files": []
},
"components": [
{
"key": "api_schema_openapi_graphql_proto",
"name": "API schema (OpenAPI/GraphQL/proto)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 40
},
{
"key": "mcp_server",
"name": "MCP server",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "runnable_examples",
"name": "Runnable examples",
"detail": "demos, notebooks",
"points": 40,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "demos, notebooks"
}
}
],
"max_points": 40
}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.13.0"
},
"warnings": [
"Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token",
"GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository"
],
"report_type": "repository",
"generated_at": "2026-07-26T01:54:21.919420Z",
"schema_version": "0.27.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/v/vitessce/vitessce-python.svg",
"full_name": "vitessce/vitessce-python",
"license_state": "standard",
"license_spdx": "MIT"
}Bewertungen sind Signale, keine Garantien. Sie spiegeln öffentlich sichtbare Praxis auf GitHub wider — kein Code-Audit und keine Sicherheitsgarantie.
Fehlende Daten werden ausgeschlossen und die Gewichte neu normiert, nie als null bewertet. Die Methodik ist versioniert und offen: Metriken v1.13.0, Schema v0.27.0 — vollständige Methodik · Metriken-Wiki.
Wie ein einzelnes Ergebnis im Gesamtregister steht: aggregierte Statistiken — PyPI.