原始 JSON 报告 机器可读
{
"data": {
"repo": {
"topics": [
"single-cell",
"kharchenkolab",
"data-visualization",
"vitessce",
"ipywidget",
"jupyter-widget",
"jupyterlab-extension",
"hidivelab"
],
"is_fork": false,
"size_kb": 42076,
"has_wiki": false,
"homepage": "https://python-docs.vitessce.io",
"languages": {
"Python": 463971,
"Makefile": 640,
"JavaScript": 3069
},
"pushed_at": "2026-06-10T20:06:08Z",
"created_at": "2020-09-01T21:11:52Z",
"owner_type": "Organization",
"updated_at": "2026-06-10T20:07:30Z",
"description": "Python API and Jupyter widget for Vitessce",
"is_archived": false,
"is_disabled": false,
"license_spdx": "MIT",
"default_branch": "main",
"license_spdx_raw": "MIT",
"primary_language": "Python",
"significant_languages": [
"Python"
]
},
"owner": {
"blog": "http://vitessce.io",
"name": "Vitessce",
"type": "Organization",
"login": "vitessce",
"company": null,
"location": null,
"followers": 33,
"avatar_url": "https://avatars.githubusercontent.com/u/64494652?v=4",
"created_at": "2020-04-28T18:14:32Z",
"is_verified": null,
"public_repos": 12,
"account_age_days": 2279
},
"license": {
"state": "standard",
"spdx_id": "MIT",
"raw_spdx": "MIT",
"file_present": true,
"scorecard_found": true,
"profile_has_license": true
},
"activity": {
"releases": [
{
"tag": "v3.2.6",
"kind": "patch",
"published_at": "2024-05-24T18:01:04Z"
}
],
"recent_commits": [
{
"oid": "7e7bcee1e090e2e3a4833df542ceff2373ed8a7a",
"body": null,
"is_bot": false,
"headline": "Update README.md (#507)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-06-10T20:06:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ff02d80d5ad8542709a6fbc78927c4587b716da7",
"body": "* Convert async custom message handlers to sync\n\n* Lint\n\n* Update",
"is_bot": false,
"headline": "Convert async custom message handlers to sync (#506)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-06-04T01:24:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d1bf74e1ae84a80d0072f1dd0e86c74d201bf77e",
"body": null,
"is_bot": false,
"headline": "Upgrade js version (#505)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-05-29T17:55:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "46bee69ec781d126a35465eeb3fa817489bb3807",
"body": "Co-authored-by: Mark Keller <7525285+keller-mark@users.noreply.github.com>",
"is_bot": false,
"headline": "Add is_zip handling to multivec wrapper (#503)",
"author_name": "Nikolay Akhmetov",
"author_login": "NickAkhmetov",
"committed_at": "2026-05-29T17:49:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "624db76f9b68bb78b8c454406c15f43d9ab61375",
"body": "* use zarr3 and unpin dask\n\n* relax ome-zarr upped bound\n\n* allow-direct-references hatch\n\n* set tool.hatch.metadata.allow-direct-references false\n\n* WIP: support for zarr v3\n\n* WIP: fix tests\n\n* Remove storage of explicit bounding_box metadata\n\n* Lint\n\n* Pin snakemake\n\n* Lint\n\n* F-string issue\n\n* Undo pin snakemake\n\n* Update xenium morton code nb\n\n* Updates\n\n---------\n\nCo-authored-by: Mark Keller <7525285+keller-mark@users.noreply.github.com>",
"is_bot": false,
"headline": "Use zarr3 and unpin dask (#486)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-05-27T20:11:32Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ef0ecf5595b6b03bd43435dd8a889895de1302ce",
"body": null,
"is_bot": false,
"headline": "Bump js package version (#504)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-05-21T15:48:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9f31d6ec1a8c4f11baf73efa71bab28ba474e23f",
"body": null,
"is_bot": false,
"headline": "Update (#500)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-04-17T15:30:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "564a35d4f793aad219b4455de96696593e9f16ab",
"body": null,
"is_bot": false,
"headline": "Update action version (#499)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-04-17T15:23:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "342be73e062ba0d647f032aada839bb4bec80ae0",
"body": null,
"is_bot": false,
"headline": "Release new version (#498)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-04-17T15:16:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e7a01754f55398b64c7c95982c6a58330f168cef",
"body": "* update initialization of SpatialQuery object\n\n* set various colors for motifs, change default parameters\n\n* add query type with specified anchor cells\n\n* seperate colors to by motif and by type in two trees\n\n* add HeatmapView of SpatialQuery motif\n\n* keep the motif orders between heatmap and cell \n[…]\ns identified\n\n* update bracket position\n\n* Troubleshoot installation and update notebook\n\n* Update nb\n\n* Comments\n\n---------\n\nCo-authored-by: Mark Keller <7525285+keller-mark@users.noreply.github.com>",
"is_bot": false,
"headline": "Update of SpatialQuery module in Vitessce (#495)",
"author_name": "Shaokun An",
"author_login": null,
"committed_at": "2026-04-17T14:43:06Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "9faf440114af804de82f6f7219d16f24a86d3e46",
"body": "* Version bump\n\n* Bump js version and update blobs notebook\n\n* Update script\n\n* Lint\n\n* Update\n\n* Add getRange support to widget\n\n* Bump\n\n* Lint",
"is_bot": false,
"headline": "Version bump v3.9.4 (#492)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-02-12T13:37:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2c36e0c5bf61047f71f6207be3fcc34a57536cc9",
"body": "* Version bump\n\n* Bump js version and update blobs notebook\n\n* Update script\n\n* Lint\n\n* Update",
"is_bot": false,
"headline": "Version bump (#490)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-02-05T17:47:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "adb066c088307b658a45ca9cf2ab2d63effaa5ef",
"body": null,
"is_bot": false,
"headline": "Bump js version (#489)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2026-01-20T15:45:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "92ace00dc917dd07c3cf75ad9c9b72fbfb9b6876",
"body": "* Bump js version\n\n* Support featureLabels and obsEmbedding in SpatialDataWrapper\n\n* Update test",
"is_bot": false,
"headline": "Bump js version (#485)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-11-12T20:48:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "88312360202005d8f7ea6fd09af798829b8b7ef2",
"body": null,
"is_bot": false,
"headline": "Bump version from 3.7.7 to 3.7.8 (#484)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-11-03T21:43:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "324a5b006a358cfdf3d6cec3725c633b574d2a10",
"body": "* Add zorder functions to data_utils\n\n* Add comments, updated notebook\n\n* Comments\n\n* Comments\n\n* WIP: unit tests\n\n* Update z-order query tests\n\n* Use fixtures\n\n* Update tests\n\n* WIP: update nb\n\n* Add helper functions\n\n* Update nb\n\n* Lint\n\n* Use small dataset for tests\n\n* Lint\n\n* Add spatialdata dep for tests\n\n* Update\n\n* Update\n\n* Update\n\n* Update",
"is_bot": false,
"headline": "Utilities for sorting spatialdata points along z-order curve (#476)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-10-30T21:28:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "569117a83c429986936fc53ebadd8403197b349d",
"body": "* WIP: cdn fallbacks\n\n* Fallback for dynamic-importmap\n\n* Version bump",
"is_bot": false,
"headline": "JS import fallbacks (#482)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-10-29T17:13:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cd044c9eff4d1a1991fb08a14a238feb59457e51",
"body": "* Fix bug\n\n* Update version",
"is_bot": false,
"headline": "Fix local serving of spatialdata.zarr.zip (#479)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-10-15T12:34:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "03f8e60a4023e4a85b0272eae703a013f63cb7b1",
"body": "* Support obs_points_path in SpatialDataWrapper\n\n* Lint",
"is_bot": false,
"headline": "Support obs_points_path in SpatialDataWrapper (#478)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-10-13T17:56:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bac58e309c2d22fab9a1671e7c253828f69fbd7e",
"body": "* Add server_host param\n\n* Update pyproject.toml",
"is_bot": false,
"headline": "Add server_host param (#475)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-08-27T15:40:42Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "09eb63f905d061ce3d1d5409d182c51cd67f6029",
"body": "* Update\n\n* Version",
"is_bot": false,
"headline": "Update JS version. Update needs_bigtiff check. (#472)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-08-21T20:58:29Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "beff3da3cc7b8792aa8c21d07b1525cd7aff44d7",
"body": null,
"is_bot": false,
"headline": "Bumped version (#471)",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2025-08-13T22:42:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "240a22bf0952706602f7256da8042f1f7013794b",
"body": null,
"is_bot": false,
"headline": "Create devcontainer.json (#467)",
"author_name": "Fabian Rost",
"author_login": "fbnrst",
"committed_at": "2025-08-11T17:26:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5aa7412e7ec57d1c71b8ae3e2a007e2857a50e9a",
"body": "* Updated version and added zip support\n\n* Wrapper changes added\n\n* Version update in Widget",
"is_bot": false,
"headline": "Updated version and added zip support (#464)",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2025-08-06T16:55:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a6bd970cc7d13c3faba912c01cb870a4e5c17418",
"body": "* Add nb\n\n* Add visium HD nb\n\n* Update VitessceWidget docs\n\n* Lint\n\n* Docs\n\n* Update marimo nb\n\n* Version",
"is_bot": false,
"headline": "Add Visium HD nb (#463)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-08-05T20:29:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2196ac1bca51c2f1fdd727c0befef775ef4a5d0f",
"body": null,
"is_bot": false,
"headline": "Bump js version (#462)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-07-29T13:51:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b78b7c1a95444c371264aa78c6552d727a128db6",
"body": null,
"is_bot": false,
"headline": "Version bump (#461)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-07-25T19:07:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "171d736bb60ef926af6e6fd0ea2a03080388b950",
"body": "* Update SpatialDataWrapper. Bump js version\n\n* Update spatialdata notebooks\n\n* Lint\n\n* Bump js version",
"is_bot": false,
"headline": "Upgrade JS package version. Update SpatialDataWrapper class (#460)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-07-25T15:37:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "037a60f015ddfb4b7a0a6d6368a0777c1b41afa5",
"body": "* Add another spatialdata example notebook\n\n* Update nb",
"is_bot": false,
"headline": "Add another spatialdata example notebook (#458)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-07-16T01:21:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3a5cfda0c412eaee8d9fe1fa7841fea5e7491a0f",
"body": "* Version bump\n\n* Lint",
"is_bot": false,
"headline": "Version bump (#457)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-07-16T01:06:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ac3454cc542d867f7726585d4bc3b72bbf790a9e",
"body": "* Updaed vitessce version\n\n* Added uv.lock",
"is_bot": false,
"headline": "Updaed vitessce version (#456)",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2025-07-15T17:30:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "81794c2c628d780eba5b1aaa53be6e9f720bd7e3",
"body": "* WIP: nb for example from tmt\n\n* Use remote data",
"is_bot": false,
"headline": "Notebook for MERFISH example stored via SpatialData (#455)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-07-14T17:03:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "532cbfa110148656a2b068f03061442fe886f099",
"body": null,
"is_bot": false,
"headline": "Update kpmp-2023 nb (#454)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-07-11T21:14:24Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6cbdedf870dba899dff67c8992776fdfebe43f06",
"body": "* Fixed path in the images array\n\n* U[dated version",
"is_bot": false,
"headline": "Fixed path in the images array (#453)",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2025-07-10T20:55:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ac8ad7444f28e9eb675271d017f4f0c8b837779a",
"body": "* Add notebook. Upgrade js pkg version. Add support for obsFeatureColumns in anndata wrapper\n\n* Bump version\n\n* Lint",
"is_bot": false,
"headline": "Quality metric example notebook (#449)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-07-03T13:49:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8fbb0f94d7cb0a465d3dfc13319d08184aa315a0",
"body": "* Add notebook\n\n* Fix tesT",
"is_bot": false,
"headline": "Add example notebook with AnnData object and image (#447)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-07-02T20:47:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "adee7487fc4e483238b809c7db030cb19e90a834",
"body": null,
"is_bot": false,
"headline": "Reproduce KPMP example using spatialdata object (#442)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-06-25T21:14:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2542d0a0a204b5f6ddf37df8446d2396db249dba",
"body": null,
"is_bot": false,
"headline": "WASM (#445)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-06-23T17:52:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cfbf4c53e73be7464cca63ffef43cc1e21dfefb2",
"body": "* Limit dependencies\n\n* Move imports\n\n* Space",
"is_bot": false,
"headline": "Limit dependencies (#444)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-06-23T15:03:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "263dccf9b839d617f2e3cc25be761796f9b4e18d",
"body": null,
"is_bot": false,
"headline": "Upgrade js (#443)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-06-23T14:34:38Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "227afd47c537ed04034a02e2c408208ce5aa620a",
"body": "* Add test for marimo html export\n\n* Extras",
"is_bot": false,
"headline": "Add test for marimo html export (#439)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-06-05T15:52:12Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ab490cce5cc6336e261a2b387623d491a7ade1f1",
"body": null,
"is_bot": false,
"headline": "Remove parameter from vc.widget (#438)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-06-05T14:13:24Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6bb8c7b6365cb60b8a0d372e36013d1031663e56",
"body": "* WIP\n\n* Add marimo nb",
"is_bot": false,
"headline": "Notebook which demonstrates neuroglancer view (#437)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-06-05T14:01:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b84155a93439a57957c75a04f21ef57d7cb8f7d6",
"body": "* Added tests\n\n* Version update\n\n* Version update\n\n* Linting\n\n* Used is_zip as param\n\n* Specified is_zip as true\n\n* Fixed is_zip check",
"is_bot": false,
"headline": "Tkakar/cat-1250 add zip zarr support (#436)",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2025-06-05T13:06:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b5fae09cf501e28d46fb7ca6a7a7d6326080aede",
"body": "* Upgrade/loosen dependencies and add invoke_batched parameter\n\n* Lint; Fix tests\n\n* Changes for marimo\n\n* Version\n\n* Uv.lock\n\n* Version",
"is_bot": false,
"headline": "Upgrade/loosen dependencies and add invoke_batched parameter (#435)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-06-02T20:14:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a4597c2134a7f7c2f16562b52c8433e2407ce580",
"body": "* Updated vitessce-js version\n\n* Added uv.lock",
"is_bot": false,
"headline": "Tkakar/cat 1265 update vitessce (#429)",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2025-05-16T15:01:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "88d6d8511bb7062f5c06944d4b20ad94b4f2d64c",
"body": "* Add notebooks to docs\n\n* Update nb titles",
"is_bot": false,
"headline": "Add notebooks to docs (#426)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-15T01:25:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "28f0e383ed7a7e6b318124fdd8c351993f5b88b6",
"body": "* Add playwright tests\n\n* Update\n\n* Update\n\n* Update\n\n* Update\n\n* Update",
"is_bot": false,
"headline": "Add playwright tests (#425)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-14T15:41:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e61fce9003dda92afc947b10ac27d0b31e843456",
"body": "* Updated url for options object\n\n* Add if statements and isAbsoluteUrl function\n\n* Update if statement\n\n---------\n\nCo-authored-by: Mark Keller <7525285+keller-mark@users.noreply.github.com>",
"is_bot": false,
"headline": "Updated url for options object (#424)",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2025-05-13T22:48:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1ecdb399ef25e4e1d7072abc1f50a421c2e1c485",
"body": null,
"is_bot": false,
"headline": "Prevent double url prefixing (#423)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-12T23:39:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "24501e8f42ffec77f1b5162f72240eb8993a250c",
"body": "* Fix bug\n\n* Revert let back to const",
"is_bot": false,
"headline": "Fix workspaces proxying bug: still need jupyter_server_proxy (#422)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-12T18:18:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "05d925e6800ec18b208b73d5409fadb93a0b702f",
"body": null,
"is_bot": false,
"headline": "Update pyproject.toml (#421)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-12T16:29:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8650b30d72837df5620e682cf070b62c7490bb92",
"body": "* Updated prependbaseUrl\n\n* Adjusted baseURL for local files\n\n* Linting\n\n* Update url modification function\n\n* Revert usage of current_port\n\n* Lint\n\n---------\n\nCo-authored-by: Mark Keller <7525285+keller-mark@users.noreply.github.com>",
"is_bot": false,
"headline": "Tkakar/cat 1261 fix issue 419 (#420)",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2025-05-12T16:25:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "560c63d5bbbdc732edf5ada068fbc9a7d45d6940",
"body": null,
"is_bot": false,
"headline": "Update coordination in spatialdata configuration (#418)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-07T19:46:47Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8dafa7d89e91857ce7bde72a50588469ae00f1e7",
"body": "* page_mode and page_esm params\n\n* Update\n\n* Fix bug\n\n* Linting\n\n* Update js version\n\n* Add pagemode notebook\n\n* Update",
"is_bot": false,
"headline": "page_mode and page_esm params (#355)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-07T15:28:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "084b9bf0d92ced7a8538761848661c2dcaa22149",
"body": null,
"is_bot": false,
"headline": "Update (#417)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-07T13:04:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "87a825757963f16ac4786dbdbbade21f21e3001b",
"body": null,
"is_bot": false,
"headline": "Update pyproject.toml (#416)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-05T17:08:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b5d60020ba4f7cd11f725cf261e9e76f2ad1ffcc",
"body": "* Fix bugs\n\n* Update",
"is_bot": false,
"headline": "Fix local filepath access, update dependency ranges (#414)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-04T13:30:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c128b916cf4cf13cfbfa66648cac46fa23a9e8d6",
"body": null,
"is_bot": false,
"headline": "Update README.md (#415)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-05-04T13:30:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "969157ac2ce878c24a7224c00f607df3757fb028",
"body": null,
"is_bot": false,
"headline": "Update pyproject.toml (#413)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-04-22T23:28:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bfe1bde5eaed1b9ad644d75a1948695482ff3a4f",
"body": "* Batching for zarr get requests\n\n* Lint",
"is_bot": false,
"headline": "Batching for zarr get requests (#412)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-04-22T20:05:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d0cf33fcace1a022d7c562613980d61d33ba57c3",
"body": "* Update\n\n* Version bump",
"is_bot": false,
"headline": "Update github actions for deploy workflow (#410)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-04-22T16:20:33Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6177a5ec57ac0de5e71f59c73e31caac35221b2c",
"body": "* Pin dependencies for zarr. Update spatialdata-blobs notebook\n\n* Update\n\n* esbuild_py to oxc_py",
"is_bot": false,
"headline": "More deps (#409)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-04-22T16:16:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f3e77844c24f932b3dd0595504ebbd70a249bfc1",
"body": "* Pin dependencies for zarr. Update spatialdata-blobs notebook\n\n* Update",
"is_bot": false,
"headline": "Pin dependencies for zarr. Update spatialdata-blobs notebook (#408)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-04-22T16:07:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e1a8fa110bc881624346412fe3f4ae084b33bcc9",
"body": "* WIP: add prefer_local option\n\n* Update\n\n* Add spatialdata notebook\n\n* Lint\n\n* WIP: spatialdata_mouseliver notebook\n\n* Update notebook",
"is_bot": false,
"headline": "Use local artifact data for `vc.widget` when possible (#402)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-04-22T16:06:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "424ed66555caeb16d87b448ad8a5d3ff0c9c75ae",
"body": null,
"is_bot": false,
"headline": "add notebook (#399)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-01-17T14:01:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "36f1e50eba0a9eef3d86131be5070d139bba6525",
"body": "* Fix bug\r\n\r\n* Lint",
"is_bot": false,
"headline": "Fix spatialdata sdata_store bug (#398)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2025-01-14T21:32:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "823e00b34739108f17ac280653fb3019eff5d870",
"body": null,
"is_bot": false,
"headline": "Fix spatialdata configuration (#396)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-12-18T17:19:37Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "94193c0e20af448c6889b610dc9f9d82a6eec164",
"body": null,
"is_bot": false,
"headline": "Update pyproject yml (#393)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-11-27T22:27:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4496e749ffab32058740a55523d04a4097880f77",
"body": "…(#392)\n\n* Added support to accept split param in hconcat and vconcat functions\r\n\r\n* Add assertion\r\n\r\n* Add test and ensure int values\r\n\r\n* Linting\r\n\r\n---------\r\n\r\nCo-authored-by: Mark Keller <7525285+keller-mark@users.noreply.github.com>",
"is_bot": false,
"headline": "Added support to accept split param in hconcat and vconcat functions …",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2024-11-27T22:07:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fcc6ab1d5455aa814d15bc9d56814c5e04d767bb",
"body": null,
"is_bot": false,
"headline": "Add blobs notebook for image rendering (#387)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-11-27T21:45:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a19bea9ed6ef8e7f036199fcb45d6aeedfce2191",
"body": "* Conda to uv\r\n\r\n* Update flake8 command\r\n\r\n* Update",
"is_bot": false,
"headline": "Conda to uv (#390)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-11-27T21:44:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "83fa4bbfecc595f7db175322ace2e443742e0840",
"body": null,
"is_bot": false,
"headline": "Add JsonWrapper class (#386)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-11-04T17:19:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "843a638224ebac0f592a5429c04a988c57f59eae",
"body": "* Move spatialdata dependency to optional\r\n\r\n* Update spatialdata notebook\r\n\r\n* Version",
"is_bot": false,
"headline": "Move spatialdata dependency to dev (#384)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-10-28T13:45:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "390ddbb866f27d1283cd3a95e72d2eab3f4aaf14",
"body": null,
"is_bot": false,
"headline": "Switch to HIDIVE Lab name (#383)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-10-28T13:39:38Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cd5b9398f74707cfc009b72c47dc5eac5ce2877a",
"body": "* (refactor): separate out schema creation\r\n\r\n* (feat): initial pass at spatial data\r\n\r\n* (feat): working notebook minus spots (maybe a vitessce bug?)\r\n\r\n* (fix): try to get spots to appear\r\n\r\n* (chore): comment out other stuff to make widget show more\r\n\r\n* Fix visium config\r\n\r\n* (feat): firstt pass\n[…]\natial data2 (#375)\r\n\r\n* Try again\r\n\r\n* Fix bugs\r\n\r\n* Lint\r\n\r\n* Update\r\n\r\n* Omit\r\n\r\n* Add test\r\n\r\n* JS version\r\n\r\n* Fix spatialdata nb\r\n\r\n---------\r\n\r\nCo-authored-by: ilan-gold <ilanbassgold@gmail.com>",
"is_bot": false,
"headline": "SpatialDataWrapper (#378)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-10-15T18:18:05Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "5da19a8d428663dc95756e899ee40fbab2f4c3ad",
"body": "* (refactor): separate out schema creation\r\n\r\n* (feat): initial pass at spatial data\r\n\r\n* (feat): working notebook minus spots (maybe a vitessce bug?)\r\n\r\n* (fix): try to get spots to appear\r\n\r\n* (chore): comment out other stuff to make widget show more\r\n\r\n* Fix visium config\r\n\r\n* (feat): firstt pass\n[…]\ntoml\r\n\r\n* Keller mark/spatial data2 (#375)\r\n\r\n* Try again\r\n\r\n* Fix bugs\r\n\r\n* Lint\r\n\r\n* Update\r\n\r\n* Omit\r\n\r\n* Add test\r\n\r\n* JS version\r\n\r\n---------\r\n\r\nCo-authored-by: ilan-gold <ilanbassgold@gmail.com>",
"is_bot": false,
"headline": "SpatialDataWrapper v2 (#373)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-10-15T13:58:58Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "bc5e21c4f5ec8015207a5b90ac3f2a83caec85d5",
"body": "…stores (#371)\n\n* Register artifacts in wrapper constructors\r\n\r\n* Docs\r\n\r\n* Add test\r\n\r\n* Update\r\n\r\n* Version bump\r\n\r\n* Lint\r\n\r\n* Update is_remote logic\r\n\r\n* Update",
"is_bot": false,
"headline": "Allow passing artifacts as data in addition to paths, urls, and zarr …",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-10-04T19:29:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6bac2c256c7acb03192c6d1255513323c28c1799",
"body": "* Update exports for createPlugins\r\n\r\n* Version",
"is_bot": false,
"headline": "Keller mark/more exports (#370)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-10-02T15:39:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f267084ee22de69addd2cd9a70725d15d303b25b",
"body": "* Added utility functions to update and remove a view\r\n\r\n* Added tests for the utility functions\r\n\r\n* Refactored to multiple functions",
"is_bot": false,
"headline": "Added utility functions to update and remove a view (#368)",
"author_name": "tkakar",
"author_login": "tkakar",
"committed_at": "2024-10-02T13:16:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "dc021ebe57fa86be20830ebc8a19c2ed8446254c",
"body": null,
"is_bot": false,
"headline": "Add notebook (#369)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-10-02T12:43:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b02d7670bb6c07c8d7503a8b34bc26287af8f6fd",
"body": null,
"is_bot": false,
"headline": "Fix bug (#367)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-09-19T19:00:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c48fdd8fc9cd0ab1ade5158b90c9c13544a8acbd",
"body": "* Fix binder issue\r\n\r\n* bump version",
"is_bot": false,
"headline": "Fix binder example (#363)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-09-11T20:10:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "94501cc83206be97066ef9fc092d73982e211842",
"body": "* Update AnnDataWrapper to support h5ad files with ref spec json\r\n\r\n* Lint\r\n\r\n* Fix tests\r\n\r\n* Update",
"is_bot": false,
"headline": "Support for H5AD-based AnnData in AnnDataWrapper (#361)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-09-09T12:53:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "06a04e7dfdb83965722790f5599389074de12143",
"body": "* Misc changes\r\n\r\n* Bigtiff helper for rgb\r\n\r\n* Remove unused import\r\n\r\n* Lint\r\n\r\n* Unused variables",
"is_bot": false,
"headline": "Misc: Spatial-query, kerchunk, and OME helper functions (#360)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-08-31T22:35:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "55b3f57a681e82cedae7a67e2c75abd70d49f4b6",
"body": "…)) (#357)\n\n* Unit test for anndata wrapper + to_dict\r\n\r\n* linting",
"is_bot": false,
"headline": "Unit test for to_dict output following .add_object(AnnDataWrapper(...…",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-08-31T19:37:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bc7b3537b638fef893014365894257d0f5e5caee",
"body": "* Spatial-Query plugin and example notebook\r\n\r\n* Version\r\n\r\n* Widget plugins module\r\n\r\n* Update\r\n\r\n* Linting\r\n\r\n* Lint\r\n\r\n* Update comments\r\n\r\n* Update docs\r\n\r\n* Update",
"is_bot": false,
"headline": "Plugin for SpatialQuery (#354)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-08-02T13:27:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c88eb372fbbc8939ffadf1c5048e1a0c35b55b39",
"body": null,
"is_bot": false,
"headline": "Update fill_template.py (#353)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-07-29T13:55:19Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2e36cb27784c501502cec39823643e5aec371b5e",
"body": "* WIP: class to encapsulate widget logic\r\n\r\n* Potentially working widget things\r\n\r\n* Example of chat plugin\r\n\r\n* Lint\r\n\r\n* Update\r\n\r\n* Update",
"is_bot": false,
"headline": "Plugin class (#350)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-07-24T19:02:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "31bd2ccad537fcc546f285417b10dd31cb0e4e09",
"body": null,
"is_bot": false,
"headline": "NickAkhmetov/Copy `requestInit` when using `from_dict` (#352)",
"author_name": "Nikolay Akhmetov",
"author_login": "NickAkhmetov",
"committed_at": "2024-07-19T17:09:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5ae1daea28ce8d0d37158ecc7f3c89f68116479e",
"body": "* Cap `numpy` under v2\r\n\r\n* bump patch version",
"is_bot": false,
"headline": "NickAkhmetov/Cap `numpy` under v2 (#349)",
"author_name": "Nikolay Akhmetov",
"author_login": "NickAkhmetov",
"committed_at": "2024-06-17T17:34:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b07a72a1035023948807e23130edca77dbda9dfe",
"body": "* Create module for plugin JS\r\n\r\n* Add docs\r\n\r\n* Lint\r\n\r\n* Ignore unused imports",
"is_bot": false,
"headline": "Create module for plugin JS (#337)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-05-15T15:51:38Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b2e312093351dd92554ef1159df55a018a486ab9",
"body": null,
"is_bot": false,
"headline": "(chore): supported python versions (#342)",
"author_name": "Ilan Gold",
"author_login": "ilan-gold",
"committed_at": "2024-05-06T14:03:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3adbad4687f8b4b46a35607b56381aa4c7bb455d",
"body": "…ta on localhost (#329)\n\n* WIP: zarr get using anywidget.experimental command/invoke works\r\n\r\n* Unused zarr js import\r\n\r\n* Support local store\r\n\r\n* Lint\r\n\r\n* Cleanup\r\n\r\n* Lint\r\n\r\n* Bump version",
"is_bot": false,
"headline": "Use anywidget-based IPC for zarr gets which do not require serving da…",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-05-01T21:48:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "834b15f88753db3c882d45866310b0b53189092a",
"body": null,
"is_bot": false,
"headline": "Bump to v3.2.5 (#336)",
"author_name": "Nikolay Akhmetov",
"author_login": "NickAkhmetov",
"committed_at": "2024-04-16T20:19:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8c19c4c57631c253c25ace420bc0b2fcbc4bf973",
"body": null,
"is_bot": false,
"headline": "NickAkhmetov/Add `requestInit` param to `MultivecZarrWrapper` (#335)",
"author_name": "Nikolay Akhmetov",
"author_login": "NickAkhmetov",
"committed_at": "2024-04-15T16:12:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a74c8ad8049a68240020fc3c0600bb65e8ae03d1",
"body": null,
"is_bot": false,
"headline": "Bump version (#332)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-04-03T09:38:37Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a3580679ce13aea50c9aa1a2a2a9ab479c84f34e",
"body": "* Versions of anndata and anywidget\r\n\r\n* Update test\r\n\r\n* Revert numeric changes",
"is_bot": false,
"headline": "Versions of anndata, anywidget, JS package (#328)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-03-13T16:39:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3810797239ae651024431fbb1a2715a46a633f02",
"body": "* Update adata_to_multivec\r\n\r\n* Update pyproject.toml\r\n\r\n* Update multivec.py",
"is_bot": false,
"headline": "Update adata_to_multivec (#326)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-03-13T14:28:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "989af83a56df72cf0b5994d6f387a92b6a327842",
"body": "* Support scope_prefix parameter in link_views_by_dict\r\n\r\n* Lint\r\n\r\n* Remove unused import\r\n\r\n* Exports\r\n\r\n* Coverage\r\n\r\n* Version bump",
"is_bot": false,
"headline": "Support scope_prefix parameter in link_views_by_dict (#325)",
"author_name": "Mark Keller",
"author_login": "keller-mark",
"committed_at": "2024-02-29T19:20:59Z",
"body_truncated": false,
"is_coding_agent": false
}
],
"releases_count": 1,
"commits_last_year": 26,
"latest_release_at": "2024-05-24T18:01:04Z",
"latest_release_tag": "v3.2.6",
"releases_from_tags": false,
"days_since_last_push": 45,
"active_weeks_last_year": 17,
"days_since_latest_release": 792,
"mean_days_between_releases": null
},
"community": {
"has_readme": true,
"has_license": true,
"has_description": true,
"has_contributing": false,
"health_percentage": 37,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"ecosystem": {
"packages": [
{
"name": "vitessce",
"exists": true,
"license": null,
"keywords": [
"ipython",
"jupyter",
"widgets",
"Development Status :: 4 - Beta",
"Framework :: IPython",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3.9",
"Topic :: Multimedia :: Graphics"
],
"ecosystem": "pypi",
"matches_repo": true,
"registry_url": "https://pypi.org/project/vitessce/",
"is_deprecated": false,
"latest_version": "3.9.2",
"repository_url": "https://github.com/vitessce/vitessce-python",
"versions_count": 95,
"total_downloads": null,
"dependents_count": null,
"deprecation_note": null,
"maintainers_count": null,
"monthly_downloads": null,
"first_published_at": "2020-11-20T01:23:24.016057Z",
"latest_published_at": "2026-06-04T01:25:56.729313Z",
"latest_version_yanked": null,
"days_since_latest_publish": 52
}
]
},
"popularity": {
"forks": 12,
"stars": 67,
"watchers": 5,
"fork_history": {
"days": [
{
"date": "2021-01-05",
"count": 1
},
{
"date": "2021-12-14",
"count": 1
},
{
"date": "2022-06-06",
"count": 1
},
{
"date": "2022-09-22",
"count": 1
},
{
"date": "2023-09-27",
"count": 1
},
{
"date": "2024-04-02",
"count": 1
},
{
"date": "2024-08-20",
"count": 1
},
{
"date": "2025-02-11",
"count": 1
},
{
"date": "2025-08-09",
"count": 1
},
{
"date": "2025-10-13",
"count": 1
},
{
"date": "2025-11-13",
"count": 1
},
{
"date": "2026-03-02",
"count": 1
}
],
"complete": true,
"collected": 12,
"total_forks": 12
},
"star_history": null,
"open_issues_and_prs": 118
},
"ai_readiness": {
"has_nix": false,
"example_dirs": [
"demos",
"notebooks"
],
"has_llms_txt": false,
"has_dockerfile": false,
"has_mcp_signal": false,
"bootstrap_files": [
"Makefile"
],
"api_schema_files": [],
"has_devcontainer": true,
"typecheck_configs": [],
"toolchain_manifests": [],
"largest_source_bytes": 83101,
"source_files_sampled": 61,
"oversized_source_files": 2,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"dependencies": {
"manifests": [
"pyproject.toml",
"setup.cfg",
"setup.py",
"tests-widget/package.json"
],
"advisories": {
"error": null,
"scope": "published_package",
"source": "osv",
"findings": [],
"collected": true,
"malicious": [],
"truncated": false,
"by_severity": {},
"advisory_count": 0,
"affected_count": 0,
"assessed_count": 18,
"malicious_count": 0,
"assessed_package": "pypi:vitessce@3.9.2",
"unassessed_count": 0,
"direct_affected_count": 0
},
"ecosystems": [
"npm",
"pypi"
],
"dependencies": [
{
"name": "scipy",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">=1.2.1"
},
{
"name": "pandas",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">=1.1.2"
},
{
"name": "black",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">=21.11b1"
},
{
"name": "numpy",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">=1.21.2"
},
{
"name": "zarr",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">=3.0.0"
}
],
"all_dependencies": {
"error": "GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository",
"source": null,
"packages": [],
"collected": false,
"truncated": false,
"total_count": null,
"direct_count": null,
"indirect_count": null
}
},
"maintainership": {
"issues": {
"open_prs": 9,
"merged_prs": 241,
"open_issues": 109,
"closed_ratio": 0.505,
"closed_issues": 111,
"closed_unmerged_prs": 21
},
"bus_factor": 1,
"bot_contributors": 0,
"top_contributors": [
{
"type": "User",
"login": "keller-mark",
"commits": 412,
"avatar_url": "https://avatars.githubusercontent.com/u/7525285?v=4"
},
{
"type": "User",
"login": "mccalluc",
"commits": 43,
"avatar_url": "https://avatars.githubusercontent.com/u/730388?v=4"
},
{
"type": "User",
"login": "ilan-gold",
"commits": 25,
"avatar_url": "https://avatars.githubusercontent.com/u/43999641?v=4"
},
{
"type": "User",
"login": "ivababukova",
"commits": 21,
"avatar_url": "https://avatars.githubusercontent.com/u/65414651?v=4"
},
{
"type": "User",
"login": "tkakar",
"commits": 10,
"avatar_url": "https://avatars.githubusercontent.com/u/14091615?v=4"
},
{
"type": "User",
"login": "NickAkhmetov",
"commits": 9,
"avatar_url": "https://avatars.githubusercontent.com/u/19957804?v=4"
},
{
"type": "User",
"login": "fbnrst",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/7300030?v=4"
},
{
"type": "User",
"login": "LucaMarconato",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/2664412?v=4"
},
{
"type": "User",
"login": "sehilyi",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/9922882?v=4"
},
{
"type": "User",
"login": "manzt",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/24403730?v=4"
}
],
"contributors_sampled": 10,
"top_contributor_share": 0.786
},
"quality_signals": {
"has_ci": true,
"has_tests": true,
"ci_workflows": [
"deploy.yml",
"docs.yml",
"lint.yml",
"test.yml",
"test_demos.yml",
"test_widget.yml"
],
"has_docs_dir": true,
"linter_configs": [],
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"security_signals": {
"lockfiles": [
"pnpm-lock.yaml",
"uv.lock"
],
"scorecard": {
"checks": [
{
"name": "Binary-Artifacts",
"score": 10,
"reason": "no binaries found in the repo",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
},
{
"name": "Branch-Protection",
"score": null,
"reason": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
},
{
"name": "CI-Tests",
"score": 10,
"reason": "30 out of 30 merged PRs checked by a CI test -- score normalized to 10",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
},
{
"name": "CII-Best-Practices",
"score": 0,
"reason": "no effort to earn an OpenSSF best practices badge detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
},
{
"name": "Code-Review",
"score": 2,
"reason": "Found 6/30 approved changesets -- score normalized to 2",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
},
{
"name": "Contributors",
"score": 10,
"reason": "project has 12 contributing companies or organizations",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
},
{
"name": "Dangerous-Workflow",
"score": 10,
"reason": "no dangerous workflow patterns detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
},
{
"name": "Dependency-Update-Tool",
"score": 0,
"reason": "no update tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
},
{
"name": "Fuzzing",
"score": 0,
"reason": "project is not fuzzed",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
},
{
"name": "License",
"score": 10,
"reason": "license file detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
},
{
"name": "Maintained",
"score": 6,
"reason": "6 commit(s) and 2 issue activity found in the last 90 days -- score normalized to 6",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
},
{
"name": "Packaging",
"score": 10,
"reason": "packaging workflow detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
},
{
"name": "Pinned-Dependencies",
"score": 0,
"reason": "dependency not pinned by hash detected -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
},
{
"name": "SAST",
"score": 0,
"reason": "SAST tool is not run on all commits -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
},
{
"name": "Security-Policy",
"score": 0,
"reason": "security policy file not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
},
{
"name": "Signed-Releases",
"score": null,
"reason": "no releases found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
},
{
"name": "Token-Permissions",
"score": 0,
"reason": "detected GitHub workflow tokens with excessive permissions",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
},
{
"name": "Vulnerabilities",
"score": 0,
"reason": "170 existing vulnerabilities detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
}
],
"commit": "7e7bcee1e090e2e3a4833df542ceff2373ed8a7a",
"ran_at": "2026-07-26T01:53:55Z",
"aggregate_score": 4,
"scorecard_version": "v5.5.0"
},
"has_codeql_workflow": false,
"has_security_policy": false,
"has_dependabot_config": false
},
"contribution_flow": {
"collected": true,
"ci_last_run_at": "2026-06-10T20:07:26Z",
"oldest_open_prs": [
{
"number": 224,
"created_at": "2023-01-17T13:12:21Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 277,
"created_at": "2023-09-03T20:30:33Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 304,
"created_at": "2023-10-13T06:38:52Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 307,
"created_at": "2023-11-20T21:44:57Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 314,
"created_at": "2024-01-22T19:19:59Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 321,
"created_at": "2024-02-15T20:45:38Z",
"last_comment_at": "2024-02-16T16:17:32Z",
"last_comment_author": "keller-mark"
},
{
"number": 330,
"created_at": "2024-04-02T16:18:24Z",
"last_comment_at": "2024-05-07T15:14:27Z",
"last_comment_author": "ilan-gold"
},
{
"number": 341,
"created_at": "2024-05-06T09:33:12Z",
"last_comment_at": "2024-05-10T09:01:41Z",
"last_comment_author": "ilan-gold"
},
{
"number": 466,
"created_at": "2025-08-08T14:42:33Z",
"last_comment_at": null,
"last_comment_author": null
}
],
"last_merged_pr_at": "2026-06-10T20:06:06Z",
"ci_last_conclusion": "SUCCESS",
"oldest_open_issues": [
{
"number": 17,
"created_at": "2020-12-09T20:22:04Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 279,
"created_at": "2020-12-31T19:55:18Z",
"last_comment_at": "2020-12-31T20:07:51Z",
"last_comment_author": "keller-mark"
},
{
"number": 280,
"created_at": "2020-12-31T19:56:09Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 30,
"created_at": "2021-01-04T20:20:51Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 34,
"created_at": "2021-01-05T18:54:06Z",
"last_comment_at": "2021-01-05T19:07:43Z",
"last_comment_author": "sehilyi"
},
{
"number": 35,
"created_at": "2021-01-05T19:07:46Z",
"last_comment_at": "2021-01-05T19:10:09Z",
"last_comment_author": "keller-mark"
},
{
"number": 41,
"created_at": "2021-01-22T16:13:11Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 281,
"created_at": "2021-02-04T17:07:52Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 50,
"created_at": "2021-02-24T20:54:10Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 52,
"created_at": "2021-03-04T17:04:17Z",
"last_comment_at": "2021-03-04T17:09:29Z",
"last_comment_author": "keller-mark"
},
{
"number": 58,
"created_at": "2021-03-31T19:16:00Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 61,
"created_at": "2021-05-08T04:49:13Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 64,
"created_at": "2021-05-30T16:21:12Z",
"last_comment_at": "2021-06-02T18:00:05Z",
"last_comment_author": "ilan-gold"
},
{
"number": 68,
"created_at": "2021-06-04T19:18:20Z",
"last_comment_at": "2021-06-08T17:07:12Z",
"last_comment_author": "ilan-gold"
},
{
"number": 75,
"created_at": "2021-06-15T14:29:28Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 76,
"created_at": "2021-06-15T14:56:20Z",
"last_comment_at": "2021-06-15T22:27:40Z",
"last_comment_author": "keller-mark"
},
{
"number": 77,
"created_at": "2021-06-15T15:48:42Z",
"last_comment_at": "2021-06-15T16:55:02Z",
"last_comment_author": "keller-mark"
},
{
"number": 78,
"created_at": "2021-06-15T15:55:47Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 81,
"created_at": "2021-06-15T17:55:33Z",
"last_comment_at": "2021-06-15T18:06:20Z",
"last_comment_author": "keller-mark"
},
{
"number": 91,
"created_at": "2021-07-27T16:16:20Z",
"last_comment_at": null,
"last_comment_author": null
}
]
}
},
"config": {
"disabled_metrics": [],
"disabled_categories": [],
"disabled_components": {}
},
"source": {
"url": "https://github.com/vitessce/vitessce-python",
"host": "github.com",
"name": "vitessce-python",
"owner": "vitessce"
},
"metrics": {
"overall": {
"key": "overall",
"band": "moderate",
"name": "Overall health",
"note": null,
"notes": [],
"value": 57,
"inputs": {
"security": 52,
"vitality": 47,
"community": 46,
"governance": 62,
"engineering": 77
},
"components": []
},
"categories": [
{
"key": "vitality",
"band": "at_risk",
"name": "Vitality",
"value": 47,
"weight": 0.22,
"metrics": [
{
"key": "development_activity",
"band": "at_risk",
"name": "Development activity",
"note": null,
"notes": [],
"value": 49,
"inputs": {
"commits_last_year": 26,
"human_commit_share": 1,
"days_since_last_push": 45,
"active_weeks_last_year": 17
},
"components": [
{
"key": "push_recency",
"name": "Push recency",
"detail": "last push 45 days ago",
"points": 18,
"status": "partial",
"details": [
{
"code": "push_recency",
"params": {
"days": 45
}
}
],
"max_points": 36
},
{
"key": "commit_cadence",
"name": "Commit cadence",
"detail": "17/52 weeks with commits",
"points": 11.8,
"status": "partial",
"details": [
{
"code": "commit_cadence_weeks",
"params": {
"weeks": 17
}
}
],
"max_points": 36
},
{
"key": "commit_volume",
"name": "Commit volume",
"detail": "26 commits in the last year",
"points": 12.9,
"status": "partial",
"details": [
{
"code": "commits_last_year",
"params": {
"count": 26
}
}
],
"max_points": 18
},
{
"key": "openssf_scorecard_maintained",
"name": "OpenSSF Scorecard: Maintained",
"detail": "6 commit(s) and 2 issue activity found in the last 90 days -- score normalized to 6",
"points": 6,
"status": "partial",
"details": [],
"max_points": 10
}
]
},
{
"key": "release_discipline",
"band": "at_risk",
"name": "Release discipline",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 44,
"inputs": {
"releases_count": 1,
"latest_release_tag": "v3.2.6",
"releases_from_tags": false,
"days_since_latest_release": 792,
"mean_days_between_releases": null
},
"components": [
{
"key": "ships_releases",
"name": "Ships releases",
"detail": "1 releases published",
"points": 27,
"status": "met",
"details": [
{
"code": "releases_published",
"params": {
"count": 1
}
}
],
"max_points": 27
},
{
"key": "release_recency",
"name": "Release recency",
"detail": "latest release 792 days ago",
"points": 0,
"status": "missed",
"details": [
{
"code": "release_recency",
"params": {
"days": 792
}
}
],
"max_points": 36
},
{
"key": "release_cadence",
"name": "Release cadence",
"detail": "cadence unknown (single release)",
"points": 12.6,
"status": "partial",
"details": [
{
"code": "release_cadence_unknown",
"params": {}
}
],
"max_points": 27
},
{
"key": "openssf_scorecard_signed_releases",
"name": "OpenSSF Scorecard: Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
}
]
},
{
"key": "abandonment",
"band": "excellent",
"name": "Abandonment",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"cap": null,
"state": "maintained",
"guards": [],
"signals": [],
"red_flag": false,
"multiplier_pct": 100,
"declared_reason": null,
"unverified_reason": null,
"unanswered_open_prs": null,
"unanswered_open_issues": null,
"days_since_last_merged_pr": null,
"days_since_last_human_commit": 45,
"days_since_last_human_commit_is_floor": false
},
"components": [
{
"key": "project_is_still_maintained",
"name": "Project is still maintained",
"detail": "last human commit 45 days ago",
"points": 100,
"status": "met",
"details": [
{
"code": "abandonment_maintained",
"params": {
"days": 45
}
}
],
"max_points": 100
}
]
}
],
"description": "Is the project alive — is code being written and are releases shipping?"
},
{
"key": "community",
"band": "at_risk",
"name": "Community & Adoption",
"value": 46,
"weight": 0.18,
"metrics": [
{
"key": "popularity",
"band": "at_risk",
"name": "Popularity & adoption",
"note": null,
"notes": [],
"value": 42,
"inputs": {
"forks": 12,
"stars": 67,
"watchers": 5,
"growth_state": "unverified",
"growth_factor_pct": 100,
"growth_unverified_reason": "no_history"
},
"components": [
{
"key": "stars",
"name": "Stars",
"detail": "67 stars",
"points": 29.5,
"status": "partial",
"details": [
{
"code": "stars",
"params": {
"count": 67
}
}
],
"max_points": 60
},
{
"key": "forks",
"name": "Forks",
"detail": "12 forks",
"points": 8.7,
"status": "partial",
"details": [
{
"code": "forks",
"params": {
"count": 12
}
}
],
"max_points": 25
},
{
"key": "watchers",
"name": "Watchers",
"detail": "5 watchers",
"points": 3.3,
"status": "partial",
"details": [
{
"code": "watchers",
"params": {
"count": 5
}
}
],
"max_points": 15
}
]
},
{
"key": "community_health",
"band": "moderate",
"name": "Community health",
"note": null,
"notes": [],
"value": 50,
"inputs": {
"has_readme": true,
"has_license": true,
"has_contributing": false,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 22.5,
"status": "met",
"details": [],
"max_points": 22.5
},
{
"key": "license",
"name": "License",
"detail": "recognized license (MIT)",
"points": 22.5,
"status": "met",
"details": [
{
"code": "license_standard",
"params": {}
},
{
"code": "license_spdx",
"params": {
"spdx": "MIT"
}
}
],
"max_points": 22.5
},
{
"key": "contributing_guide",
"name": "CONTRIBUTING guide",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "code_of_conduct",
"name": "Code of conduct",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 13.5
},
{
"key": "issue_template",
"name": "Issue template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.2
},
{
"key": "pr_template",
"name": "PR template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.3
}
]
}
],
"description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
},
{
"key": "governance",
"band": "moderate",
"name": "Sustainability & Governance",
"value": 62,
"weight": 0.24,
"metrics": [
{
"key": "maintainer_resilience",
"band": "at_risk",
"name": "Maintainer resilience (bus factor)",
"note": null,
"notes": [],
"value": 37,
"inputs": {
"bus_factor": 1,
"contributors_sampled": 10,
"top_contributor_share": 0.786
},
"components": [
{
"key": "bus_factor",
"name": "Bus factor",
"detail": "1 contributor(s) cover half of all commits",
"points": 9,
"status": "partial",
"details": [
{
"code": "bus_factor",
"params": {
"count": 1
}
}
],
"max_points": 54
},
{
"key": "commit_distribution",
"name": "Commit distribution",
"detail": "top contributor authored 79% of commits",
"points": 4.8,
"status": "partial",
"details": [
{
"code": "top_contributor_share",
"params": {
"share": 79
}
}
],
"max_points": 22.5
},
{
"key": "contributor_breadth",
"name": "Contributor breadth",
"detail": "10 contributors",
"points": 13.5,
"status": "met",
"details": [
{
"code": "contributors_sampled",
"params": {
"count": 10
}
}
],
"max_points": 13.5
},
{
"key": "openssf_scorecard_contributors",
"name": "OpenSSF Scorecard: Contributors",
"detail": "project has 12 contributing companies or organizations",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "moderate",
"name": "Issue & PR responsiveness",
"note": null,
"notes": [],
"value": 62,
"inputs": {
"merged_prs": 241,
"open_issues": 109,
"closed_issues": 111,
"issue_closed_ratio": 0.505,
"closed_unmerged_prs": 21
},
"components": [
{
"key": "issue_resolution",
"name": "Issue resolution",
"detail": "50% of issues closed",
"points": 23.6,
"status": "partial",
"details": [
{
"code": "issues_closed_share",
"params": {
"share": 50
}
}
],
"max_points": 46.75
},
{
"key": "pr_acceptance",
"name": "PR acceptance",
"detail": "241/262 decided PRs merged",
"points": 35.2,
"status": "partial",
"details": [
{
"code": "decided_prs_merged",
"params": {
"merged": 241,
"decided": 262
}
}
],
"max_points": 38.25
},
{
"key": "openssf_scorecard_code_review",
"name": "OpenSSF Scorecard: Code-Review",
"detail": "Found 6/30 approved changesets -- score normalized to 2",
"points": 3,
"status": "partial",
"details": [],
"max_points": 15
}
]
},
{
"key": "stewardship",
"band": "moderate",
"name": "Ownership & stewardship",
"note": null,
"notes": [],
"value": 61,
"inputs": {
"followers": 33,
"owner_type": "Organization",
"is_verified": null,
"owner_login": "vitessce",
"public_repos": 12,
"account_age_days": 2279
},
"components": [
{
"key": "ownership_backing",
"name": "Ownership backing",
"detail": "organization-owned",
"points": 30,
"status": "met",
"details": [
{
"code": "owner_organization",
"params": {}
}
],
"max_points": 30
},
{
"key": "verified_domain",
"name": "Verified domain",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "owner_reach",
"name": "Owner reach",
"detail": "33 followers of vitessce",
"points": 11,
"status": "partial",
"details": [
{
"code": "owner_followers",
"params": {
"count": 33,
"login": "vitessce"
}
}
],
"max_points": 25
},
{
"key": "track_record",
"name": "Track record",
"detail": "12 public repos, account ~6 yr old",
"points": 20.1,
"status": "partial",
"details": [
{
"code": "public_repos",
"params": {
"count": 12
}
},
{
"code": "account_age_years",
"params": {
"years": 6
}
}
],
"max_points": 25
}
]
},
{
"key": "package_maintenance",
"band": "excellent",
"name": "Package maintenance",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"packages": [
"vitessce"
],
"ecosystems": "pypi",
"any_deprecated": false,
"min_days_since_publish": 52
},
"components": [
{
"key": "published_resolvable",
"name": "Published & resolvable",
"detail": "1 package(s) on pypi",
"points": 25,
"status": "met",
"details": [
{
"code": "packages_published",
"params": {
"count": 1,
"ecosystems": "pypi"
}
}
],
"max_points": 25
},
{
"key": "publish_recency",
"name": "Publish recency",
"detail": "latest publish 52 days ago",
"points": 35,
"status": "met",
"details": [
{
"code": "publish_recency",
"params": {
"days": 52
}
}
],
"max_points": 35
},
{
"key": "version_history",
"name": "Version history",
"detail": "95 published versions",
"points": 20,
"status": "met",
"details": [
{
"code": "published_versions",
"params": {
"count": 95
}
}
],
"max_points": 20
},
{
"key": "not_deprecated",
"name": "Not deprecated",
"detail": "active, not deprecated or yanked",
"points": 20,
"status": "met",
"details": [
{
"code": "package_not_deprecated",
"params": {}
}
],
"max_points": 20
}
]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "good",
"name": "Engineering Quality",
"value": 77,
"weight": 0.2,
"metrics": [
{
"key": "engineering_practices",
"band": "moderate",
"name": "Engineering practices",
"note": null,
"notes": [],
"value": 68,
"inputs": {
"has_ci": true,
"has_tests": true,
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": "6 workflow(s)",
"points": 24,
"status": "met",
"details": [
{
"code": "ci_workflows",
"params": {
"count": 6
}
}
],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 24,
"status": "met",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "30 out of 30 merged PRs checked by a CI test -- score normalized to 10",
"points": 20,
"status": "met",
"details": [],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "excellent",
"name": "Documentation",
"note": null,
"notes": [],
"value": 90,
"inputs": {
"topics": [
"single-cell",
"kharchenkolab",
"data-visualization",
"vitessce",
"ipywidget",
"jupyter-widget",
"jupyterlab-extension",
"hidivelab"
],
"has_wiki": false,
"homepage": "https://python-docs.vitessce.io",
"has_readme": true,
"has_docs_dir": true,
"has_description": true
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 30,
"status": "met",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 25,
"status": "met",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": "https://python-docs.vitessce.io",
"points": 15,
"status": "met",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": "8 topics",
"points": 10,
"status": "met",
"details": [
{
"code": "topics_count",
"params": {
"count": 8
}
}
],
"max_points": 10
},
{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "moderate",
"name": "Security",
"value": 52,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "at_risk",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): Branch-Protection, Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"branch_protection",
"signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 40,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 16,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 2,
"scorecard_aggregate": 4
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "30 out of 30 merged PRs checked by a CI test -- score normalized to 10",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 6/30 approved changesets -- score normalized to 2",
"points": 1.5,
"status": "partial",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 12 contributing companies or organizations",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no dangerous workflow patterns detected",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "no update tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "6 commit(s) and 2 issue activity found in the last 90 days -- score normalized to 6",
"points": 4.5,
"status": "partial",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow detected",
"points": 5,
"status": "met",
"details": [],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "SAST tool is not run on all commits -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "detected GitHub workflow tokens with excessive permissions",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "170 existing vulnerabilities detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "dependency_advisories",
"band": "excellent",
"name": "Dependency advisories",
"note": "Excluded from scoring (no data or not applicable): No advisories left outstanding. Remaining weights renormalized. Matched the pypi:vitessce@3.9.2 runtime dependency closure — what installing the published package pulls in — 18 packages. Reachability is not analyzed.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"no_advisories_left_outstanding"
]
}
},
{
"code": "weights_renormalized",
"params": {}
},
{
"code": "advisories_scope_published",
"params": {
"package": "pypi:vitessce@3.9.2",
"assessed": 18
}
},
{
"code": "advisories_reachability",
"params": {}
}
],
"value": 100,
"inputs": {
"source": "osv",
"advisories": 0,
"affected_packages": 0,
"assessed_packages": 18,
"unassessed_packages": 0,
"affected_by_severity": "none",
"direct_affected_packages": 0
},
"components": [
{
"key": "direct_dependencies_free_of_known_advisories",
"name": "Direct dependencies free of known advisories",
"detail": "no direct dependency carries a known advisory",
"points": 35,
"status": "met",
"details": [
{
"code": "no_direct_advisories",
"params": {}
}
],
"max_points": 35
},
{
"key": "indirect_dependencies_free_of_known_advisories",
"name": "Indirect dependencies free of known advisories",
"detail": "no indirect dependency carries a known advisory",
"points": 25,
"status": "met",
"details": [
{
"code": "no_indirect_advisories",
"params": {}
}
],
"max_points": 25
},
{
"key": "no_advisories_left_outstanding",
"name": "No advisories left outstanding",
"detail": "no advisory carries a publication date",
"points": 0,
"status": "excluded",
"details": [
{
"code": "advisories_no_publication_date",
"params": {}
}
],
"max_points": 40
}
]
},
{
"key": "malicious_dependencies",
"band": "excellent",
"name": "Malicious dependencies",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"source": "osv",
"meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
"packages": [],
"red_flag": false,
"assessed_packages": 18,
"malicious_packages": 0,
"direct_malicious_packages": 0,
"withdrawn_malicious_packages": 0,
"installable_malicious_packages": 0
},
"components": [
{
"key": "no_dependency_reported_as_a_malicious_package",
"name": "No dependency reported as a malicious package",
"detail": "no dependency is reported as a malicious package",
"points": 100,
"status": "met",
"details": [
{
"code": "no_malicious_dependencies",
"params": {}
}
],
"max_points": 100
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "excellent",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"review_only_matches": 0,
"assessed_self_published_locations": 21
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "at_risk",
"name": "AI Readiness",
"value": 46,
"weight": 0,
"metrics": [
{
"key": "ai_agent_context",
"band": "at_risk",
"name": "Agent context & guidance",
"note": null,
"notes": [],
"value": 40,
"inputs": {
"has_llms_txt": false,
"legible_history_share": 0.99,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "legible_commit_history",
"name": "Legible commit history",
"detail": "99 of 100 human commits state their intent (structured subject or explanatory body)",
"points": 40,
"status": "met",
"details": [
{
"code": "legible_history",
"params": {
"legible": 99,
"sampled": 100
}
}
],
"max_points": 40
}
]
},
{
"key": "ai_verify_loop",
"band": "moderate",
"name": "Verify loop (build / test / typecheck)",
"note": null,
"notes": [],
"value": 50,
"inputs": {
"has_nix": false,
"has_tests": true,
"lockfiles": [
"pnpm-lock.yaml",
"uv.lock"
],
"has_dockerfile": false,
"typed_language": false,
"bootstrap_files": [
"Makefile"
],
"has_devcontainer": true,
"has_linter_config": false,
"typecheck_configs": [],
"agent_commit_share": 0,
"toolchain_manifests": [],
"dependency_bot_commit_share": 0
},
"components": [
{
"key": "one_command_bootstrap",
"name": "One-command bootstrap",
"detail": "Makefile",
"points": 18,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "Makefile"
}
}
],
"max_points": 18
},
{
"key": "automated_tests",
"name": "Automated tests",
"detail": null,
"points": 22,
"status": "met",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": "devcontainer, lockfile",
"points": 10,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "devcontainer, lockfile"
}
}
],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "no agent-authored commits among the last 100",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_authored_commits",
"params": {
"sampled": 100
}
}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "no automated dependency updates observed",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_dependency_automation",
"params": {}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "moderate",
"name": "Code legibility for models",
"note": null,
"notes": [],
"value": 53,
"inputs": {
"primary_language": "Python",
"largest_source_bytes": 83101,
"source_files_sampled": 61,
"oversized_source_files": 2
},
"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "Python without a type-check config",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_typecheck_config_language",
"params": {
"language": "Python"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "2/61 source files over 60KB",
"points": 53.2,
"status": "partial",
"details": [
{
"code": "oversized_source_files",
"params": {
"kb": 60,
"sampled": 61,
"oversized": 2
}
}
],
"max_points": 55
}
]
},
{
"key": "ai_interfaces",
"band": "at_risk",
"name": "Machine-readable interfaces",
"note": null,
"notes": [],
"value": 40,
"inputs": {
"example_dirs": [
"demos",
"notebooks"
],
"has_mcp_signal": false,
"api_schema_files": []
},
"components": [
{
"key": "api_schema_openapi_graphql_proto",
"name": "API schema (OpenAPI/GraphQL/proto)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 40
},
{
"key": "mcp_server",
"name": "MCP server",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "runnable_examples",
"name": "Runnable examples",
"detail": "demos, notebooks",
"points": 40,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "demos, notebooks"
}
}
],
"max_points": 40
}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.13.0"
},
"warnings": [
"Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token",
"GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository"
],
"report_type": "repository",
"generated_at": "2026-07-26T01:54:21.919420Z",
"schema_version": "0.27.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/v/vitessce/vitessce-python.svg",
"full_name": "vitessce/vitessce-python",
"license_state": "standard",
"license_spdx": "MIT"
}