CompOmics / ms2rescore

Cuándo se añadió cada estrella y fork, recopilado de GitHub y agrupado por día. El crecimiento acumulado se sitúa justo encima de las adiciones diarias que lo componen, de modo que ambos se leen en conjunto: la acumulación orgánica sostenida no se parece en nada a un pico abrupto y efímero. Cuando esa diferencia es medible, se informa como autenticidad del crecimiento.

Cada punto abarca 7 días.

Conjunto completo de dependencias resueltas según el grafo de dependencias de GitHub: 19 paquetes directos y 191 indirectos (transitivos). El cierre transitivo es completo cuando el repositorio incluye un lockfile.

Instalar pypi:ms2rescore@4.0.1 arrastra 69 paquetes, directos y transitivos: 0 tienen avisos conocidos, de los cuales 0 son dependencias directas.

Ningún aviso conocido afecta a las dependencias evaluadas.

Un aviso significa que la versión registrada en el grafo de dependencias cae dentro del rango afectado de un aviso. No se analiza la alcanzabilidad, y el grafo incluye fijaciones de desarrollo y prueba: un hallazgo puede referirse al utillaje y no al software distribuido.

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          "body": "…ad code\n\nmodel_dir was a real MS2PIPFeatureGenerator kwarg missing from the config\nschema, and im2deep's reference_dataset schema default claimed\n\"Meier_unimod.parquet\" while the actual default falls through to IM2Deep's\nown bundled reference dataset. Also removes an unused self._verbose\nleftover in im2deep.py, mirroring the one already removed from deeplc.py.",
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          "headline": "fix: document im2deep's model_dir/reference_dataset defaults, drop de…",
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          "body": "…e kwarg distribution\n\ndeeplc_retrain was redundant since it's already scoped under the deeplc\nfeature generator's own config block. Renamed to finetune; the old name is\nstill accepted for backward compatibility but now emits a DeprecationWarning\nand is mapped onto the new option, with an explicit finetune taking\nprecedence.\n\nAlso consolidated the near-duplicate predict/finetune kwarg filtering into a\nsingle helper, and dropped the unused self._verbose attribute.",
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          "body": "ms2_tolerance was removed as an MS2PIPFeatureGenerator kwarg in favor of the\ntop-level tolerance_value/tolerance_mode, but the key was left behind in\nconfig defaults, schema, docs, and the sage example.",
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          "headline": "fix: remove stale ms2_tolerance from ms2pip config",
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          "headline": "code review final bugfixes and discrepancies",
          "author_name": "ArthurDeclercq",
          "author_login": null,
          "committed_at": "2026-07-17T16:26:02Z",
          "body_truncated": false,
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        },
        {
          "oid": "96eeeed076878e72273326cbdb1a240217db93f6",
          "body": "Fix /docs after ristretto integration",
          "is_bot": false,
          "headline": "Merge pull request #270 from CompOmics/fix/docs-after-ristretto",
          "author_name": "Ralf Gabriels",
          "author_login": "RalfG",
          "committed_at": "2026-07-17T15:15:12Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ce23c8583bb8d235329e1a63f5ae4b8a3531ab18",
          "body": "… into fix/docs-after-ristretto",
          "is_bot": false,
          "headline": "Merge branch 'release/4.0' of https://github.com/CompOmics/ms2rescore…",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-17T15:08:00Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ee8a1c83f5db86e7f7e977546b6569c2c3175707",
          "body": "Move package-level private rescoring functions to new module _ristretto_utils.py",
          "is_bot": false,
          "headline": "Merge pull request #269 from CompOmics/fix/rescoring-module",
          "author_name": "ArthurDeclercq",
          "author_login": "ArthurDeclercq",
          "committed_at": "2026-07-17T14:51:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "58f3c47bab9207a942233b5eadf5d550d75ecbe4",
          "body": null,
          "is_bot": false,
          "headline": "fix: correct test import",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-17T14:37:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ac1e427e50717701b80bd3a662a3acf789a487f4",
          "body": null,
          "is_bot": false,
          "headline": "docs: add rescoring module",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-17T13:57:10Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0f1f5231272cc9de4003dca08104a053af2814c9",
          "body": "…s2rescore into fix/docs-after-ristretto",
          "is_bot": false,
          "headline": "Merge branch 'fix/rescoring-module' of https://github.com/CompOmics/m…",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-17T13:54:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e09fb2137af2ec341d131b98b317e2f5204cbc26",
          "body": null,
          "is_bot": false,
          "headline": "fix: update tests",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-17T13:52:38Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "adeb0ec94e5761aa92f9fb73f054eab2f4f61bc1",
          "body": null,
          "is_bot": false,
          "headline": "Move back some functions only used in rescoring.py",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-17T13:47:50Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "bcd475395ae8cc3e41c00a3336bb450cd5adbddd",
          "body": "… into fix/rescoring-module",
          "is_bot": false,
          "headline": "Merge branch 'release/4.0' of https://github.com/CompOmics/ms2rescore…",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-17T13:39:43Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7a52505fbf5d000501632f8e54153751a30aaa83",
          "body": "…to_utils.py",
          "is_bot": false,
          "headline": "Move package-level private rescoring functions to new module _ristret…",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-17T13:39:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "45c45ae90c959631c34a17b0a5a73c997f10d302",
          "body": null,
          "is_bot": false,
          "headline": "end to end test",
          "author_name": "ArthurDeclercq",
          "author_login": null,
          "committed_at": "2026-07-17T10:57:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "24fadb75b22e88d41258b33d973fe6524f07bc61",
          "body": null,
          "is_bot": false,
          "headline": "docs: update in-depth-python-api and userguide",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-17T10:23:12Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0ab30b69551e98415c44dc7ed42af0991ad3719e",
          "body": "Replace mokapot rescoring engine with ristretto",
          "is_bot": false,
          "headline": "Merge pull request #268 from CompOmics/feat/add-ristretto",
          "author_name": "ArthurDeclercq",
          "author_login": "ArthurDeclercq",
          "committed_at": "2026-07-17T09:03:16Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c255a3fcfd7fa6f8f0d4e05509e7dceba0ac7fdc",
          "body": null,
          "is_bot": false,
          "headline": "fix import error for python 3.12",
          "author_name": "ArthurDeclercq",
          "author_login": null,
          "committed_at": "2026-07-17T08:40:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "59de3f31e2cda5fc086e12d11048967cb955805c",
          "body": "Review findings from the cumulative-diff review, addressed:\n\n- rescoring: null never actually disabled rescoring (CascadeConfig's\n  none_overrides_value=False silently ignores it), and the \"skip\n  rescoring\" path that was reachable only in principle would have\n  written no output at all. Rather than\n[…]\nreference).\n\nAlso reformats CHANGELOG.md's \"Breaking changes\" section (non-standard\nKeep a Changelog category) into the canonical Added/Changed/Removed\nsections, with breaking items tagged [BREAKING].",
          "is_bot": false,
          "headline": "Remove ability to skip rescoring; run infer_score_direction per-run",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-16T16:18:24Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "0f24e598a48cca9c51664b8af7140fcdd1e5711f",
          "body": "Cumulative summary of the mokapot -> ristretto rescoring engine\nmigration (report_fdr, model choice, auto score-direction inference,\noutput-file renames, GUI log.html fix, and the resulting config/API\nremovals), merged into the existing Unreleased section.",
          "is_bot": false,
          "headline": "Add ristretto migration entries to CHANGELOG",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-16T15:50:30Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "fba6411e330732d1456e1d74b3f18ec60e7bd5a1",
          "body": "…of-date",
          "is_bot": false,
          "headline": "docs: minor cleanup; temporarily remove overview figure as it is out-…",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-16T15:34:56Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "95a9ee6928ed58e02447e5976d956eee0a0ea214",
          "body": "The GUI's logging setup only ever attached a plain FileHandler for\n<prefix>.log.txt -- unlike the CLI, it never used a recording Rich console\nor called save_html(), so <prefix>.log.html (documented as always written)\nwas silently never created for GUI-launched runs. Added the same\nConsole(record=Tru\n[…]\naises.\n\nAlso add an INFO-level log line when rescoring actually starts, since the\nper-fold/rollup/competition detail ristretto itself logs is moving to\nDEBUG level (fixed at the source, in ristretto).",
          "is_bot": false,
          "headline": "Fix missing HTML log file in GUI runs; log when rescoring starts",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-16T15:07:55Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "617cec085aabe9688be7903546a398aa21330356",
          "body": "…nal API surface\n\n- Fix rescore() always returning empty feature_weights/n_iterations: it\n  rebuilds the final result via ristretto.evaluate() (no training, so those\n  fields come back empty), discarding the real values from the earlier\n  ristretto.rescore() call. Now carried over explicitly, includ\n[…]\ne that explicit rather than presenting it as public API. Also\n  privatized build_features_dataframe and fix_constant_pep, which were\n  only ever called internally within the rescoring workflow itself.",
          "is_bot": false,
          "headline": "Fix empty feature weights, simplify output naming, and minimize inter…",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-16T14:55:43Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "dc62a277fad5dce4ed1b70d317dd237a5f3bf71e",
          "body": "A user-provided rescoring dict (e.g. \"rescoring\": {} or {\"model\": \"lda\"})\nis passed through as-is by the config cascade -- same as feature_generators\nand psm_generator, where an override is taken at face value rather than\nmerged with defaults (CascadeConfig's max_recursion_depth stops it from\nreachi\n[…]\nig[\"rescoring\"] to ristretto.rescore()\nvia **kwargs instead of naming train_fdr/model explicitly, so ristretto's\nown defaults (train_fdr=0.01, model=\"svm\") apply to whatever the user's\nconfig omitted.",
          "is_bot": false,
          "headline": "Fix KeyError on partial/empty rescoring config",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-16T13:10:51Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "49104a38ba6de291222a2d0afb7b84d97f3c69a5",
          "body": "Clarifies alongside the existing null (skip rescoring) note that\nrescoring: {} is equivalent to omitting the key, since cascade_config\ndeep-merges schema defaults into a partial dict. Also fixes a stale\nmention that rescoring only exposed train_fdr (model was added earlier).",
          "is_bot": false,
          "headline": "Document that an empty rescoring object uses the schema defaults",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-16T12:51:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "aa7a2c013d105819b3e32cb160a4ee28f97ea26e",
          "body": "…e-ristretto-fixes",
          "is_bot": false,
          "headline": "Merge remote-tracking branch 'origin/feat/add-ristretto' into worktre…",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-16T12:50:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2610434c03c257e1a540b44e89ed151f902f327d",
          "body": "Adds a top-level report_fdr setting (default 0.01) used for console-logged\nidentification counts, HTML report stats/charts, and FlashLFQ output\nfiltering. This is independent of rescoring.train_fdr, which only controls\nristretto's semi-supervised training. Standalone report regeneration\n(ms2rescore-report) gains a --fdr option to override the report_fdr stored\nin the original run's full-config.json, without rerunning rescoring.",
          "is_bot": false,
          "headline": "Add report_fdr config option to replace hardcoded 1% FDR threshold",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-16T12:49:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8d8aec14de9bd1e2498584cf2f6425f3adc136ac",
          "body": "… into feat/add-ristretto",
          "is_bot": false,
          "headline": "Merge branch 'release/4.0' of https://github.com/CompOmics/ms2rescore…",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-16T12:35:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7d8ed98782fb24870f9dd2259246c95dc9c28a3b",
          "body": "Add rescoring.model config option (svm, the default iterative\nPercolator-style SVM; or lda, a single-pass Fisher LDA that's faster\nbut less powerful on hard-to-separate datasets), threaded through to\nristretto.rescore()'s model kwarg. Adds a GUI dropdown alongside the\nexisting training-FDR field.\n\nR\n[…]\nthe jsonschema2md CLI's\npinned Python interpreter is missing on this machine (pre-existing\nenvironment issue, unrelated to this change) -- the generated\nsections were mirrored exactly by hand instead.",
          "is_bot": false,
          "headline": "Expose ristretto's model choice; always write rescoring tables",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-16T12:28:34Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "519a3bce4dadd38f3bbae60bbce0325c38d94e76",
          "body": "ristretto-ms>=0.3.0 is now on PyPI, so the local ../ironbrew editable\npath override is no longer needed. Removes the now-empty\n[tool.uv.sources] override and its TODO, and regenerates uv.lock to\nresolve ristretto-ms from the registry.",
          "is_bot": false,
          "headline": "Depend on published ristretto-ms instead of the local editable path",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-16T12:13:13Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cfe700f86ce527f199509d02908d2949192a6e55",
          "body": "Rescoring result tables are now plain TSV (not Parquet) at every\nidentification level, and only the post-rescoring (\"after\") result is\nwritten -- \"before\" is reconstructed on demand from the main PSM\nlist's provenance data, so it's never persisted. Also documents the\nmax_psm_rank_output > 1 caveat (multi-rank rows, not statistically\nrigorous FDR) and drops the now-obsolete after_report paragraph.",
          "is_bot": false,
          "headline": "Update output-files.rst for the TSV-only, after-only rescoring tables",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-16T11:28:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b153875ecc24fcf27c8c128467c138ad4cf65e6c",
          "body": "max_psm_rank_output is a special feature for surfacing ambiguous\nresults (e.g. mumble's multiple candidate peptidoforms per spectrum),\nnot for statistically rigorous FDR control when > 1 -- that trade-off\nis now explicit and applied consistently everywhere, instead of\ncomputing a separate always-ran\n[…]\nindexing returns the same underlying PSM\nobject references, not copies, so evaluate_before_from_provenance now\ntakes a real deep copy before mutating scores, to avoid corrupting\nthe caller's psm_list.",
          "is_bot": false,
          "headline": "Rework max_psm_rank_output and report reconstruction",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-16T11:27:32Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "6e425d19010c4fe6c40c969728a239c44523df98",
          "body": "build_features_dataframe now includes a \"run\" column, and every\nristretto.rescore()/evaluate() call passes run_col=\"run\" (requires\nristretto-ms>=0.3.0). Competition and CV splitting now group by\n(run, spectrum_id) at the source, instead of spectrum_id alone --\npreviously, two different physical spec\n[…]\nntirely: \"run\" now\ncomes back natively on every RescoreResult.psms from ristretto itself,\nso there's no more index-alignment hack needed on the ms2rescore side.\n\nBumps the ristretto-ms pin to >=0.3.0.",
          "is_bot": false,
          "headline": "Fix multi-run spectrum_id collisions via ristretto's new run_col",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-16T09:49:38Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "5a7706a3a105beba66ece6bb14458bddb7d61145",
          "body": "write_rescoring_tables() writes an additional set of *_after_report\nParquet tables when max_psm_rank_output > 1 (the rank-1 report view,\ndistinct from the multi-rank *_after files), which wasn't mentioned\nanywhere in the output-files reference.",
          "is_bot": false,
          "headline": "Document after_report Parquet output files",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-16T09:11:06Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "723a9a09d380ce588140dc97a62a400bd190202a",
          "body": "…n report\n\ncompute_id_stats/identification_overlap consumed before_result unmasked,\nunlike core.py's console-log count, which excludes mumble-generated\nalternate candidates via psm.metadata['original_psm']. Attach that\nmask onto before_result.psms itself (evaluate_before), the same way\nrun already i\n[…]\nfor that level.\n\nAdds direct unit coverage for both: _n_identified's masking behavior,\nand identification_overlap's run-based disambiguation (which the old\nbare-spectrum_id grouping would undercount).",
          "is_bot": false,
          "headline": "Apply mumble original_psm mask and run+spectrum_id key consistently i…",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-16T09:10:35Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "96b8dc0ac4362a22dbcbb746b022ac17ce9245ee",
          "body": "fix_constant_pep previously only filtered result.psms, leaving\npeptidoform/peptide/protein rollups computed on the decoy-contaminated\npopulation -- _write_group_metadata would then look up stale\nscores/qvalues/PEPs for surviving PSMs. Now recomputes q-values, PEP,\nand rollups from scratch via ristre\n[…]\nt while the\nreal output looked fine. Split the fix into a result-only core\n(_fix_constant_pep_result) plus the existing psm_list-aware wrapper,\nand apply the core check to report_result independently.",
          "is_bot": false,
          "headline": "Refresh rollups in fix_constant_pep and apply it to report_result too",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-16T09:05:14Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "98c5d51e0dc150b5eddb4afd283f1d3f94a189d7",
          "body": null,
          "is_bot": false,
          "headline": "commit new lock file",
          "author_name": "ArthurDeclercq",
          "author_login": null,
          "committed_at": "2026-07-16T08:13:47Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4726d4d10685d9d9181b5b9849d85e48ae357a0b",
          "body": "fix_constant_pep now takes/returns a (PSMList, RescoreResult) pair;\nrescore() returns (psm_list, after_result, after_report_result).\nRescoreResult.psms now always carries a run column. Adds coverage for\nthe new report_result (rank-1 view, distinct from a multi-rank final\nresult) and the after_report Parquet table written when they differ.\nAlso asserts rescoring_tables_unavailable is set when the ristretto\nParquet tables are missing.",
          "is_bot": false,
          "headline": "Update tests for rescore()'s 3-tuple return and RescoreResult schema",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-15T22:14:47Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9abf1c917111df815ddc0c3c881fb1acf1663019",
          "body": "The \"Rescoring result tables\" table had inconsistent column-divider\npositions across its border/header/content rows (four different\nwidths), which docutils/Sphinx rejects as a malformed table. Rebuilt\nit with consistent column widths (verified programmatically: every\nrow shares identical +/| column positions).",
          "is_bot": false,
          "headline": "Fix malformed RST grid table in output-files.rst",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-15T22:11:37Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f6af833dac16dc1bec5b28bc6c25b4b5aec45672",
          "body": "…p levels\n\ncreate_psm_dataframe: filter psm_list to rank==1 (the report is always\na single-best-PSM-per-spectrum view, regardless of max_psm_rank_output)\nand merge before/after by (run, spectrum_id) instead of (spectrum_id,\npeptidoform). The old peptidoform-keyed merge produced NaN\nscore_before/qval\n[…]\n after_report table (rank-1 view) over after (which may be\nmulti-rank) when both exist. The overview tab shows an explicit notice\nwhen tables are unavailable instead of silently rendering empty stats.",
          "is_bot": false,
          "headline": "Rework report before/after comparison to (run, spectrum_id) + 4 rollu…",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-15T22:09:00Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "27c4c4c98371b91736ed060ffb7cba8857223cf9",
          "body": "ristretto's RescoreResult schema has no room for a passthrough run\ncolumn, so attach it after the fact (index-aligned against the\noriginal PSMList) on before_result, final_result, and report_result.\nEnables merging before/after by (run, spectrum_id) in the report,\nguarding against spectrum_id collis\n[…]\nset when it differs from after (i.e. max_psm_rank_output > 1), so\nstandalone report regeneration (ms2rescore-report) can use the same\nalways-rank-1 view as a live run instead of the multi-rank result.",
          "is_bot": false,
          "headline": "Attach run to RescoreResult.psms; persist a separate after_report table",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-07-15T22:03:35Z",
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              },
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              },
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                "max_points": 7.5
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                "status": "missed",
                "details": [],
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              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
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          },
          {
            "key": "dependency_advisories",
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            "note": "Excluded from scoring (no data or not applicable): No advisories left outstanding. Remaining weights renormalized. Matched the pypi:ms2rescore@4.0.1 runtime dependency closure — what installing the published package pulls in — 69 packages. Reachability is not analyzed.",
            "notes": [
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              "direct_malicious_packages": 0,
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            "notes": [
              {
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              "review_only_matches": 0,
              "assessed_self_published_locations": 6
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                "details": [
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                    "code": "jurisdiction_no_match",
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                  }
                ],
                "max_points": 100
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        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
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        "name": "AI Readiness",
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        "weight": 0,
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            "components": [
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                "points": 0,
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                "key": "reproducible_environment",
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                "points": 10,
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                "max_points": 8
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                "key": "openssf_scorecard_pinned_dependencies",
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  "warnings": [
    "Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token"
  ],
  "report_type": "repository",
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}