Registro públicoModerado
Informe de salud del softwareesquema 0.27.0 · métricas 1.14.0 · 2026-07-27 21:43 UTC
scverse / muon
muon is a multimodal omics Python framework
scverse/muon tiene un índice de salud de 69 sobre 100, lo que lo sitúa en la banda Moderado. Su puntuación más alta es Engineering Quality (92/100) y la más baja, AI Readiness (41/100). Se actualizó por última vez hace 3 días. Una sola persona concentra la mayor parte del trabajo reciente.
69
global / 100Índice de salud del software
Las métricas se agrupan en categorías ponderadas sobre una escala de 1 a 100. El resultado global parte de su media; cuando la evidencia pública activa la Política de Jurisdicciones de Alto Riesgo, la calificación se ajusta y recibe el límite 49 (En riesgo). Preparación para IA queda fuera.
69
Excelente85-100Ejemplar; cumple prácticamente todos los criterios evaluados
Bueno70-84Saludable; carencias menores
Moderado50-69Aceptable con carencias notables; se recomienda revisión
En riesgo30-49Debilidades significativas; su adopción exige cautela
Crítico1-29Problemas graves (proyecto abandonado, un solo mantenedor, sin higiene)
Perfil de puntuación
Cada eje es una categoría. La forma importa más que la media: un proyecto sano llena toda la figura, mientras que un perfil de picos y cráteres indica que la fortaleza en una dimensión enmascara el riesgo en otra.
Titularidad
scverseOrganización
1520 seguidores87 repositorios públicosdesde nov 2021
Este repositorio está respaldado por una organización: una custodia compartida y responsable que puede sobrevivir a cualquier mantenedor individual.
Métricas por categoría
Vitalidad
¿Está vivo el proyecto: se escribe código y se publican versiones?
60
Actividad de desarrollo
66Moderado
Cómo se puntúa
| 36/36 | Recencia de push — último push hace 3 días |
| 9/36 | Cadencia de commits — 13/52 semanas con commits |
| 13/18 | Volumen de commits — 27 commits en el último año |
| 8/10 | OpenSSF Scorecard: Maintained — 9 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 8 |
Datos de entrada utilizados
| commits_last_year | 27 |
| human_commit_share | 1 |
| days_since_last_push | 3 |
| active_weeks_last_year | 13 |
Disciplina de publicación
52Moderado
Cómo se puntúa
| 27/27 | Publica versiones — 8 versiones publicadas |
| 7.2/36 | Recencia de las versiones — última versión hace 635 días |
| 12.6/27 | Cadencia de publicación — una versión cada ~177,2 días |
| 0/10 | OpenSSF Scorecard: Signed-Releases — sin datos |
Datos de entrada utilizados
| releases_count | 8 |
| latest_release_tag | v0.1.7 |
| releases_from_tags | no |
| days_since_latest_release | 635 |
| mean_days_between_releases | 177,2 |
Excluidos de la puntuación (sin datos o no aplicable): OpenSSF Scorecard: Signed-Releases. Los pesos restantes se han renormalizado.
Comunidad y Adopción
¿Tiene el proyecto usuarios, descargas, atención y unas condiciones acogedoras para quienes contribuyen?
71
Popularidad y adopción
58Moderado
Cómo se puntúa
| 39.6/60 | Estrellas — 277 estrellas |
| 13/25 | Forks — 37 forks |
| 5.3/15 | Observadores — 10 observadores |
Datos de entrada utilizados
| forks | 37 |
| stars | 277 |
| watchers | 10 |
| growth_state | unverified |
| growth_factor_pct | 100 |
| growth_unverified_reason | no_history |
Salud de la comunidad
85Excelente
Cómo se puntúa
| 22.5/22.5 | README |
| 22.5/22.5 | Licencia — licencia reconocida (BSD-3-Clause) |
| 18/18 | Guía CONTRIBUTING |
| 13.5/13.5 | Código de conducta |
| 0/7.2 | Plantilla de issues |
| 0/6.3 | Plantilla de PR |
Datos de entrada utilizados
| has_readme | sí |
| has_license | sí |
| has_contributing | sí |
| has_issue_template | no |
| has_code_of_conduct | sí |
| has_pull_request_template | no |
Sostenibilidad y Gobernanza
¿Sobrevivirá el proyecto a sus personas: factor bus, capacidad de respuesta, quién lo respalda y mantenimiento del paquete?
62
Resiliencia de mantenedores (factor bus)
39En riesgo
Cómo se puntúa
| 9/54 | Factor bus — la mitad de los commits recae en 1 contribuyente(s) |
| 6.5/22.5 | Distribución de commits — el principal contribuyente firma el 71% de los commits |
| 13.5/13.5 | Amplitud de contribuyentes — 23 contribuyentes |
| 10/10 | OpenSSF Scorecard: Contributors — project has 17 contributing companies or organizations |
Datos de entrada utilizados
| bus_factor | 1 |
| contributors_sampled | 23 |
| top_contributor_share | 0,709 |
Cómo se puntúa
| 35.9/46.8 | Resolución de issues — 77% de issues cerradas |
| 36.4/38.3 | Aceptación de PR — 40/42 PR decididos fusionados |
| 4.5/15 | OpenSSF Scorecard: Code-Review — Found 9/24 approved changesets -- score normalized to 3 |
Datos de entrada utilizados
| merged_prs | 40 |
| open_issues | 35 |
| closed_issues | 116 |
| issue_closed_ratio | 0,768 |
| closed_unmerged_prs | 2 |
Propiedad y custodia
75Bueno
Cómo se puntúa
| 30/30 | Respaldo de la propiedad — propiedad de una organización |
| 0/20 | Dominio verificado |
| 22.9/25 | Alcance del propietario — 1520 seguidores de scverse |
| 22.3/25 | Trayectoria — 87 repos públicos, cuenta de ~4 años |
Datos de entrada utilizados
| followers | 1520 |
| owner_type | Organization |
| is_verified | — |
| owner_login | scverse |
| public_repos | 87 |
| account_age_days | 1700 |
Calidad de Ingeniería
¿Existen unas prácticas mínimas de ingeniería y documentación?
92
Prácticas de ingeniería
94Excelente
Cómo se puntúa
| 24/24 | Flujos de trabajo de CI — 3 flujo(s) de trabajo |
| 24/24 | Pruebas presentes |
| 16/16 | Configuración de linter |
| 9.6/9.6 | Hooks de pre-commit |
| 6.4/6.4 | .editorconfig |
| 14/20 | OpenSSF Scorecard: CI-Tests — 7 out of 10 merged PRs checked by a CI test -- score normalized to 7 |
Datos de entrada utilizados
| has_ci | sí |
| has_tests | sí |
| has_editorconfig | sí |
| has_linter_config | sí |
| has_precommit_config | sí |
Documentación
90Excelente
Cómo se puntúa
| 30/30 | README |
| 25/25 | Directorio de documentación |
| 15/15 | Sitio de documentación / página del proyecto — https://muon.scverse.org/ |
| 10/10 | Descripción del repositorio |
| 10/10 | Topics — 11 topics |
| 0/10 | Wiki |
Datos de entrada utilizados
| topics | multimodal-data, multimodal-omics-analysis, multi-omics, anndata, scanpy, mudata, muon, scrna-seq, scatac-seq, cite-seq, scverse |
| has_wiki | no |
| homepage | https://muon.scverse.org/ |
| has_readme | sí |
| has_docs_dir | sí |
| has_description | sí |
Seguridad
¿Son sólidas las prácticas visibles de seguridad y de cadena de suministro, sin exposición jurisdiccional de alto riesgo sin resolver?
60
Postura de seguridad
50Moderado
Cómo se puntúa
| 7.5/7.5 | Binary-Artifacts — no binaries found in the repo |
| 2.2/7.5 | Branch-Protection — branch protection is not maximal on development and all release branches |
| 1.8/2.5 | CI-Tests — 7 out of 10 merged PRs checked by a CI test -- score normalized to 7 |
| 0/2.5 | CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected |
| 2.2/7.5 | Code-Review — Found 9/24 approved changesets -- score normalized to 3 |
| 2.5/2.5 | Contributors — project has 17 contributing companies or organizations |
| 10/10 | Dangerous-Workflow — no dangerous workflow patterns detected |
| 0/7.5 | Dependency-Update-Tool — no update tool detected |
| 0/5 | Fuzzing — project is not fuzzed |
| 2.5/2.5 | Licencia — license file detected |
| 6/7.5 | Maintained — 9 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 8 |
| 5/5 | Packaging — packaging workflow detected |
| 1.5/5 | Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 3 |
| 0/5 | SAST — SAST tool is not run on all commits -- score normalized to 0 |
| 0/5 | Security-Policy — security policy file not detected |
| 0/7.5 | Signed-Releases — sin datos |
| 0/7.5 | Token-Permissions — detected GitHub workflow tokens with excessive permissions |
| 7.5/7.5 | Vulnerabilities — 0 existing vulnerabilities detected |
Datos de entrada utilizados
| source | openssf_scorecard |
| checks_evaluated | 17 |
| scorecard_version | v5.5.0 |
| checks_inconclusive | 1 |
| scorecard_aggregate | 5 |
Excluidos de la puntuación (sin datos o no aplicable): signed_releases. Los pesos restantes se han renormalizado.
Avisos de dependencias
100Excelente
Cómo se puntúa
| 35/35 | Dependencias directas libres de avisos conocidos — ninguna dependencia directa tiene un aviso conocido |
| 0/25 | Dependencias indirectas libres de avisos conocidos — el conjunto transitivo no es separable de las dependencias de desarrollo y prueba en este alcance |
| 0/40 | Sin avisos pendientes — ningún aviso tiene fecha de publicación |
Datos de entrada utilizados
| source | osv |
| advisories | 0 |
| affected_packages | 0 |
| assessed_packages | 9 |
| unassessed_packages | 1 |
| affected_by_severity | none |
| direct_affected_packages | 0 |
Excluidos de la puntuación (sin datos o no aplicable): Dependencias indirectas libres de avisos conocidos, Sin avisos pendientes. Los pesos restantes se han renormalizado. Se cotejaron 9 dependencias resueltas con OSV. 1 no pudieron evaluarse: sin versión resuelta, ecosistema no admitido o fuera de la lista de paquetes informada. Este repositorio no publica ningún paquete que el índice resuelva, por lo que se evaluó en su lugar el grafo de dependencias del repositorio. Ese grafo mezcla fijaciones de desarrollo y prueba con las dependencias distribuidas, de modo que solo se puntúan las dependencias declaradas en tiempo de ejecución; los hallazgos transitivos se informan como contexto y quedan excluidos de la puntuación. No se analiza la alcanzabilidad.
Preparación para IA
¿Hasta qué punto está el repositorio preparado para desarrollarse y mantenerse con agentes de codificación de IA? Es una insignia independiente y experimental — peso 0,0, de modo que se presenta por separado y no afecta a la puntuación de salud global.
41
Contexto y guía para agentes
16Crítico
Cómo se puntúa
| 0/45 | Instrucciones para agentes — sin CLAUDE.md / AGENTS.md / reglas de editor |
| 0/15 | Documentación legible por máquinas (llms.txt) |
| 15.5/40 | Historial de commits legible — 29 de 100 commits humanos declaran su intención (asunto estructurado o cuerpo explicativo) |
Datos de entrada utilizados
| has_llms_txt | no |
| legible_history_share | 0,29 |
| agent_instruction_files | — |
| agent_instruction_max_bytes | — |
Cómo se puntúa
| 18/18 | Arranque con un solo comando — docs/Makefile |
| 22/22 | Pruebas automatizadas |
| 11/11 | Configuración de lint / formato |
| 0/11 | Verificación estática de tipos |
| 0/10 | Entorno reproducible |
| 2/10 | Práctica demostrada con agentes — 1 de los últimos 100 commits con autoría o crédito de agente |
| 0/8 | Mantenimiento automatizado — no se observan actualizaciones automáticas de dependencias |
| 3/10 | OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 3 |
Datos de entrada utilizados
| has_nix | no |
| has_tests | sí |
| lockfiles | — |
| has_dockerfile | no |
| typed_language | no |
| bootstrap_files | docs/Makefile |
| has_devcontainer | no |
| has_linter_config | sí |
| typecheck_configs | — |
| agent_commit_share | 0,01 |
| toolchain_manifests | — |
| dependency_bot_commit_share | 0 |
Legibilidad del código para modelos
55Moderado
Cómo se puntúa
| 0/45 | Código verificable por tipos — Python sin configuración de verificación de tipos |
| 55/55 | Tamaños de archivo manejables — 0/31 archivos fuente de más de 60 KB |
Datos de entrada utilizados
| primary_language | Python |
| largest_source_bytes | 52.400 |
| source_files_sampled | 31 |
| oversized_source_files | 0 |
Interfaces legibles por máquina
40En riesgo
Cómo se puntúa
| 0/40 | Esquema de API (OpenAPI/GraphQL/proto) |
| 0/20 | Servidor MCP |
| 40/40 | Ejemplos ejecutables — notebooks |
Datos de entrada utilizados
| example_dirs | notebooks |
| has_mcp_signal | no |
| api_schema_files | — |
Datos clave
277estrellas de GitHub
23contribuidores
27commits en los últimos 12 meses
3días desde el último push
8versiones publicadas
1factor bus
35issues abiertas
PyPIecosistemas de paquetes
Advertencias de recopilación de datos
- Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
Más detalle
Historial de estrellas y forks 0 ★ / 37 ⇿
0Estrellas
37Forks
8Versiones
Cuándo se añadió cada estrella y fork, recopilado de GitHub y agrupado por día. El crecimiento acumulado se sitúa justo encima de las adiciones diarias que lo componen, de modo que ambos se leen en conjunto: la acumulación orgánica sostenida no se parece en nada a un pico abrupto y efímero. Cuando esa diferencia es medible, se informa como autenticidad del crecimiento.
Mayor 0Menor 1Parche 7
Cada punto abarca 5 días.
OpenSSF Scorecard 5.0 / 10
5.0agregado
Evaluación de seguridad independiente y agnóstica en cuanto a herramientas, procedente del proyecto de código abierto OpenSSF Scorecard. Cada comprobación premia una práctica de seguridad, no la herramienta de un proveedor concreto. Las comprobaciones que Scorecard no pudo determinar se marcan como n/d y se excluyen de la puntuación de seguridad (nunca se cuentan como cero).
| 10 | Binary-Artifacts | no binaries found in the repo |
| 3 | Branch-Protection | branch protection is not maximal on development and all release branches |
| 7 | CI-Tests | 7 out of 10 merged PRs checked by a CI test -- score normalized to 7 |
| 0 | CII-Best-Practices | no effort to earn an OpenSSF best practices badge detected |
| 3 | Code-Review | Found 9/24 approved changesets -- score normalized to 3 |
| 10 | Contributors | project has 17 contributing companies or organizations |
| 10 | Dangerous-Workflow | no dangerous workflow patterns detected |
| 0 | Dependency-Update-Tool | no update tool detected |
| 0 | Fuzzing | project is not fuzzed |
| 10 | License | license file detected |
| 8 | Maintained | 9 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 8 |
| 10 | Packaging | packaging workflow detected |
| 3 | Pinned-Dependencies | dependency not pinned by hash detected -- score normalized to 3 |
| 0 | SAST | SAST tool is not run on all commits -- score normalized to 0 |
| 0 | Security-Policy | security policy file not detected |
| n/d | Signed-Releases | no releases found |
| 0 | Token-Permissions | detected GitHub workflow tokens with excessive permissions |
| 10 | Vulnerabilities | 0 existing vulnerabilities detected |
Todas las dependencias 10
Conjunto completo de dependencias resueltas según el grafo de dependencias de GitHub: 0 paquetes directos y 10 indirectos (transitivos). El cierre transitivo es completo cuando el repositorio incluye un lockfile.
| Registro | Paquete | Versión | Relación |
|---|---|---|---|
| PyPI | commonmark | 0.9.1 | indirecta |
| PyPI | muon | — | indirecta |
| PyPI | nbsphinx | 0.9.3 | indirecta |
| PyPI | pydata-sphinx-theme | 0.15.2 | indirecta |
| PyPI | readthedocs-sphinx-search | 0.3.2 | indirecta |
| PyPI | recommonmark | 0.7.1 | indirecta |
| PyPI | sphinx | 7.2.6 | indirecta |
| PyPI | sphinx-automodapi | 0.17.0 | indirecta |
| PyPI | sphinx-book-theme | 1.1.2 | indirecta |
| PyPI | sphinx-rtd-theme | 2.0.0 | indirecta |
Avisos de dependencias 0
Este repositorio no publica ningún paquete que el índice resuelva, así que se evaluó su propio grafo de dependencias — 9 paquetes, que incluyen también fijaciones de desarrollo y prueba que nunca se distribuyen: 0 tienen avisos conocidos, de los cuales 0 son directas. 1 no pudieron evaluarse: sin versión resuelta, ecosistema no admitido, o fuera de la lista de paquetes informada.
Ningún aviso conocido afecta a las dependencias evaluadas.
Un aviso significa que la versión registrada en el grafo de dependencias cae dentro del rango afectado de un aviso. No se analiza la alcanzabilidad, y el grafo incluye fijaciones de desarrollo y prueba: un hallazgo puede referirse al utillaje y no al software distribuido.
Informe JSON sin procesar legible por máquina
{
"data": {
"repo": {
"topics": [
"multimodal-data",
"multimodal-omics-analysis",
"multi-omics",
"anndata",
"scanpy",
"mudata",
"muon",
"scrna-seq",
"scatac-seq",
"cite-seq",
"scverse"
],
"is_fork": false,
"size_kb": 5293,
"has_wiki": false,
"homepage": "https://muon.scverse.org/",
"languages": {
"Python": 226318
},
"pushed_at": "2026-07-24T15:17:34Z",
"created_at": "2020-02-03T02:00:15Z",
"owner_type": "Organization",
"updated_at": "2026-07-24T09:20:40Z",
"description": "muon is a multimodal omics Python framework",
"is_archived": false,
"is_disabled": false,
"license_spdx": "BSD-3-Clause",
"default_branch": "main",
"license_spdx_raw": "BSD-3-Clause",
"primary_language": "Python",
"significant_languages": [
"Python"
]
},
"owner": {
"blog": "https://scverse.org",
"name": "scverse",
"type": "Organization",
"login": "scverse",
"company": null,
"location": null,
"followers": 1520,
"avatar_url": "https://avatars.githubusercontent.com/u/95305807?v=4",
"created_at": "2021-11-30T17:11:32Z",
"is_verified": null,
"public_repos": 87,
"account_age_days": 1700
},
"license": {
"state": "standard",
"spdx_id": "BSD-3-Clause",
"raw_spdx": "BSD-3-Clause",
"file_present": true,
"scorecard_found": true,
"profile_has_license": true
},
"activity": {
"releases": [
{
"tag": "v0.1.7",
"kind": "patch",
"published_at": "2024-10-30T09:58:51Z"
},
{
"tag": "v0.1.6",
"kind": "patch",
"published_at": "2024-08-01T01:56:22Z"
},
{
"tag": "v0.1.5",
"kind": "patch",
"published_at": "2023-06-08T08:53:10Z"
},
{
"tag": "v0.1.4",
"kind": "patch",
"published_at": "2023-06-07T09:07:16Z"
},
{
"tag": "v0.1.3",
"kind": "patch",
"published_at": "2023-02-20T20:12:58Z"
},
{
"tag": "v0.1.2",
"kind": "patch",
"published_at": "2021-12-13T13:07:04Z"
},
{
"tag": "v0.1.1",
"kind": "patch",
"published_at": "2021-10-08T16:27:15Z"
},
{
"tag": "v0.1.0",
"kind": "minor",
"published_at": "2021-06-07T21:16:48Z"
}
],
"recent_commits": [
{
"oid": "05d3bf11f55ccc656e2f10a1466e185b0302aa52",
"body": "Query the installed scanpy version via importlib.metadata.version instead\nof scanpy.__version__, which scanpy deprecated. The bare `import scanpy`\nis no longer needed as every other reference uses `from scanpy import ...`.\n\nFixes #201\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
"is_bot": false,
"headline": "Avoid FutureWarning from deprecated scanpy.__version__ (#213)",
"author_name": "Lukas Heumos",
"author_login": "Zethson",
"committed_at": "2026-07-23T16:16:19Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "58dc672e6089146154a6538f4679ba8245616a2b",
"body": null,
"is_bot": false,
"headline": "release",
"author_name": "Ilia Kats",
"author_login": "ilia-kats",
"committed_at": "2026-07-23T16:06:42Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "11070b9a82a54d1bfee637e53865c2c62caebc60",
"body": "Co-authored-by: Ilia Kats <ilia-kats@gmx.net>",
"is_bot": false,
"headline": "make prot.pp.csr work with old-style sparse matrices again (#212)",
"author_name": "Lukas Heumos",
"author_login": "Zethson",
"committed_at": "2026-07-23T16:05:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cf925bc0ae97f763ddc3bc91ca628791437f6d59",
"body": null,
"is_bot": false,
"headline": "bump version",
"author_name": "Ilia Kats",
"author_login": "ilia-kats",
"committed_at": "2026-07-17T07:37:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cf00549198ae445ee374eadd0767b318be01a517",
"body": null,
"is_bot": false,
"headline": "changelog",
"author_name": "Ilia Kats",
"author_login": "ilia-kats",
"committed_at": "2026-07-17T07:32:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c1093472bc0dd45cd08719ae39e21642a4e56e6f",
"body": null,
"is_bot": false,
"headline": "add trusted publishing",
"author_name": "Ilia Kats",
"author_login": "ilia-kats",
"committed_at": "2026-07-17T07:17:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5531c338e8e2b0509b6e81fa51de774f598e5c80",
"body": "incompatible with the upcoming mudata 0.4",
"is_bot": false,
"headline": "settings: don't forward settings to mudata",
"author_name": "Ilia Kats",
"author_login": "ilia-kats",
"committed_at": "2026-06-22T14:59:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b4b0b888bc48f24b8e3f30b4804a32b8c5e284a3",
"body": null,
"is_bot": false,
"headline": "docs: clarify plotting keyword arguments (#208)",
"author_name": "Joey Dufourd",
"author_login": "joeydufourd",
"committed_at": "2026-06-22T14:01:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e70cc20071ff4e78b6c75c07c3da802286038070",
"body": "closes #187, closes #188",
"is_bot": false,
"headline": "support layers unification in anndata 0.13",
"author_name": "Ilia Kats",
"author_login": "ilia-kats",
"committed_at": "2026-05-08T09:15:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7490e8c213d2d5aac2720bdf6498cfd326eee6d2",
"body": "* Fix add_peak_annotation crash on empty distance values\n\nWhen the distance column in peak annotation TSV contains empty values\n(intergenic peaks), pandas may infer a numeric dtype. This caused\nLossySetitemError when trying to assign \"\" into the numeric column.\n\nFix by converting distance to string \n[…]\nrk add_peak_annotation to make use of Pandas' pd.NA\n\nPandas 1.0 has been released sufficiently long ago that we can assume\nmuon users have it.\n\n---------\n\nCo-authored-by: Ilia Kats <ilia-kats@gmx.net>",
"is_bot": false,
"headline": "Fix add_peak_annotation crash on empty distance values (#182)",
"author_name": "LiudengZhang",
"author_login": "LiudengZhang",
"committed_at": "2026-03-16T13:58:43Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "889d1ba05a8fed581b6685dc084d2ff78ce94efc",
"body": null,
"is_bot": false,
"headline": "fix formatting, typo in mofa docs (#177)",
"author_name": "Jan Sprengel",
"author_login": "jan-spr",
"committed_at": "2026-01-19T08:40:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c77d380e4bacb4c10b36499b36e8188d8aea4e9e",
"body": null,
"is_bot": false,
"headline": "CI: bump min Python version to 3.11",
"author_name": "Ilia Kats",
"author_login": "ilia-kats",
"committed_at": "2026-01-07T08:26:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3574ef37db1eedd3fbab4e3e595010e12110d2ff",
"body": null,
"is_bot": false,
"headline": "drop fast-array-utils min version to fix CI",
"author_name": "Ilia Kats",
"author_login": "ilia-kats",
"committed_at": "2026-01-07T08:18:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a230bca767672e1e904b1caacf105154f751ff0c",
"body": null,
"is_bot": false,
"headline": "explicitly depend on fast-array-utils for testing (closes #174)",
"author_name": "Ilia Kats",
"author_login": "ilia-kats",
"committed_at": "2026-01-07T08:08:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "97b767df4930f7a80e05066fff65dffa13764dca",
"body": null,
"is_bot": false,
"headline": "WNN: make sparse input actually work (closes #173)",
"author_name": "Ilia Kats",
"author_login": "ilia-kats",
"committed_at": "2025-12-08T15:43:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f46ce8cd8b3255edeb8cdf054b1ac655bdeb64d1",
"body": "parameter name is 'region' not 'regions'",
"is_bot": false,
"headline": "docs: ac.pl.fragment_histogram arg typo (#172)",
"author_name": "Akash Pandit",
"author_login": "akash-pandit",
"committed_at": "2025-11-10T21:34:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f03eb699af7309ecffcc1b21b3aa8b636f9b7aed",
"body": "DSB fixes",
"is_bot": false,
"headline": "Merge pull request #165 from ilia-kats/dsb_fixes",
"author_name": "ilia-kats",
"author_login": "ilia-kats",
"committed_at": "2025-10-22T09:24:32Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "48a4ad280f128deb0c479043b77fa9cb0e1f051e",
"body": null,
"is_bot": false,
"headline": "DSB: implement scale_factor and quantile_clipping options (closes #42)",
"author_name": "Ilia Kats",
"author_login": "ilia-kats",
"committed_at": "2025-10-21T13:19:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c948690d0269364344a27f7dd572d41b3c5cb8f5",
"body": null,
"is_bot": false,
"headline": "DSB: use ddof=1 in std calculation to match the R behavior (closes #131)",
"author_name": "Ilia Kats",
"author_login": "ilia-kats",
"committed_at": "2025-10-21T13:17:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ca258a5c895240852cf9d41845f51a749ad16f0e",
"body": null,
"is_bot": false,
"headline": "DSB: fix float overflow for large datasets (closes #130)",
"author_name": "Ilia Kats",
"author_login": "ilia-kats",
"committed_at": "2025-10-21T13:16:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "df281ac2baacb25f96df929fb50045bd5eecb379",
"body": "CLR: add a flavor argument and add flavors stoeckius and standard (closes #144)",
"is_bot": false,
"headline": "Merge pull request #168 from ilia-kats/clr_flavor",
"author_name": "ilia-kats",
"author_login": "ilia-kats",
"committed_at": "2025-10-21T13:08:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5735461f3a25c86b8d77e2b2ded42bd0df7d598a",
"body": "…oses #144)\n\nThe Seurat implementation differs from both the standard definition\nof CLR and the version of CLR applied in the original CITE-Seq paper.\nTherefore, allow the user to choose the CLR flavor.",
"is_bot": false,
"headline": "CLR: add a flavor argument and add flavors stoeckius and standard (cl…",
"author_name": "Ilia Kats",
"author_login": "ilia-kats",
"committed_at": "2025-10-10T16:07:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fe40bd0f9688d55646a9b012f97d9d325a4313d2",
"body": null,
"is_bot": false,
"headline": "depend on anndata[test] for tests (closes #169) (#170)",
"author_name": "ilia-kats",
"author_login": "ilia-kats",
"committed_at": "2025-10-10T11:11:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "caa9b4f31b2e39d2f438e6cafdfe19849f72dd81",
"body": "WNN fixes",
"is_bot": false,
"headline": "Merge pull request #164 from ilia-kats/wnn_fixes",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2025-10-10T00:48:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "55ef22c4c1e4206075f6e3c4c93284d168a8f864",
"body": null,
"is_bot": false,
"headline": "ICA: fix typo (closes #139)",
"author_name": "Ilia Kats",
"author_login": "ilia-kats",
"committed_at": "2025-08-14T10:00:30Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "31e472ecc3dbebdcbf170f48784046394f7cdfa1",
"body": "closes #158",
"is_bot": false,
"headline": "WNN: fix segfault if multiple cells have identical coordinates",
"author_name": "Ilia Kats",
"author_login": "ilia-kats",
"committed_at": "2025-08-14T09:30:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c0425a4e8133a9ae2106c3854a202945c14f4a21",
"body": null,
"is_bot": false,
"headline": "make WNN actually work with scanpy < 1.10 (closes #163, closes #142)",
"author_name": "Ilia Kats",
"author_login": "ilia-kats",
"committed_at": "2025-08-14T09:29:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bc6c53069febd28866ad4f5ed0c2187a55d8fa30",
"body": null,
"is_bot": false,
"headline": "Update index.rst",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2025-02-28T15:58:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "54137fe756ccef570edb75fca3539de0e54d3cae",
"body": null,
"is_bot": false,
"headline": "Update LICENSE",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2025-02-28T15:56:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0e91ed95fffb7ee4774b4642e613a919a5602d4d",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2025-02-28T15:55:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "01354894051433285a28d85ca75a628c9abc457e",
"body": null,
"is_bot": false,
"headline": "v0.1.7",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-30T10:00:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b7bacffef3c9deebb332e8fbf0d36b6a98fb30a5",
"body": null,
"is_bot": false,
"headline": "Add v0.1.7 release notes",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-30T09:57:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "db905d6e46965a7203c67bbf18f58d0ec8f0f176",
"body": null,
"is_bot": false,
"headline": "Add more tests for filter_obs()",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-24T20:48:38Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cc3f551907f21a77ccf4f624584b3a07ea8eaadc",
"body": null,
"is_bot": false,
"headline": "Add mofapy2 dependency for tests",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-17T08:16:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5f1d9cc06dde0a7b6347dbf77db8ebc3f7cb5734",
"body": "From v0.2, count fragments by default and not reads.\nSee #110 for more details.",
"is_bot": false,
"headline": "Keep the legacy behavior in count_fragments_features",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-17T01:35:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a7320b7b0866ecea5939f47befc48414b2e53d96",
"body": null,
"is_bot": false,
"headline": "Fix #110",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-17T01:12:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "174812bc12a6e2d0ef00a26c6ea4c1cd576f76f1",
"body": null,
"is_bot": false,
"headline": "Add a test for #147",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-17T00:51:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d52b60d9442ea0695a9fa38fb9b741c635bc28c0",
"body": "Fix `tfidf` to always use correct counts when from_layer is specified",
"is_bot": false,
"headline": "Merge pull request #147 from rcannood/patch-1",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-17T00:46:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ff3c0e1587a266596f1fdafbced8b7695113009b",
"body": "Fix reference to chromosome column in count_fragments_features()",
"is_bot": false,
"headline": "Merge pull request #140 from Rushil-Chakra/frag_feature_fix",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-17T00:43:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a48579556389583fcbdfa89352c426c611350a9e",
"body": null,
"is_bot": false,
"headline": "Merge branch 'main' into frag_feature_fix",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-17T00:22:29Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "eee8df0a28b1545db855dccebf5a31301fdbc8f7",
"body": "Small improvements in mu.pl.scatter()",
"is_bot": false,
"headline": "Merge pull request #134 from SarahOuologuem/fix_132",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-17T00:20:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9b98f5192458605d0bd2d86e3a7a029c0bbbf484",
"body": null,
"is_bot": false,
"headline": "Propagate error to scanpy accoding to its promised functionality",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-17T00:10:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "34c9de2b8af15bf735613566abf758f2e240d669",
"body": null,
"is_bot": false,
"headline": "Add a simple test for mu.pl.scatter()",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-16T23:51:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d29c58d46c3ab68aeaf831f841e5475e2d7be359",
"body": null,
"is_bot": false,
"headline": "Merge branch 'main' into fix_132",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-16T23:45:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "52f9e1d8d53cb1cc0d01edb66f45fb7b38ecb18b",
"body": null,
"is_bot": false,
"headline": "Use sc.pl.scatter in mu.pl.scatter",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-16T23:36:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c7461aaa6bfd870e972855f972670e5c7ed3f2c5",
"body": "Fix in-place filtering",
"is_bot": false,
"headline": "Merge pull request #148 from scverse/ig/fix_filter",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-16T23:20:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "10060b5a8959241e68c16168d110af3feb3eece2",
"body": null,
"is_bot": false,
"headline": "Fix missing filter_var()",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-16T23:18:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8aab218324c0b6878644eee6e98e32247b04ae77",
"body": null,
"is_bot": false,
"headline": "Merge branch 'main' into ig/fix_filter",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-16T23:15:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9fd69c7a5c5a10864be6095ed247670ca8f0bf34",
"body": "Fix CI",
"is_bot": false,
"headline": "Merge pull request #149 from scverse/ig/ci_fix",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-16T23:15:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2b900e7f07c98a3f7a26c6e3ff07b8cbc998f177",
"body": null,
"is_bot": false,
"headline": "Merge branch 'main' into ig/ci_fix",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-16T23:11:48Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8d38a0307715b8e2db42b2e1f741d6de6eaf1b7b",
"body": "Remember to put 3.10 in quotes",
"is_bot": false,
"headline": "Update pythonpackage.yml",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-16T23:05:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1909f5190e32741799b684474563233198e7b06f",
"body": null,
"is_bot": false,
"headline": "Deduplicate filter_obs/filter_var code",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-16T23:03:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "04489bf5f6138038f0c24468b5d6b0e11fc14b2d",
"body": null,
"is_bot": false,
"headline": "Make tests for filtering more sensible",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-16T23:03:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "172223796ed96705e53dffa049bb8db8a29a3436",
"body": null,
"is_bot": false,
"headline": "Improve tests for in-place filtering",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-16T11:20:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2aab65cee21daba24ee779fc3207a978a469a1c3",
"body": null,
"is_bot": false,
"headline": "Remove unused categories after filtering",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-16T11:11:35Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "957c6184af9ec93cd432579ce597d9898cd36ae7",
"body": null,
"is_bot": false,
"headline": "Drop Python 3.8 from CI",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-16T11:05:35Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "33a7e3ed2fc795cc9f587c45ac0112843834ea49",
"body": "…ilter",
"is_bot": false,
"headline": "Merge branch 'ig/fix_filter' of github.com:scverse/muon into ig/fix_f…",
"author_name": "ilan-gold",
"author_login": "ilan-gold",
"committed_at": "2024-10-16T10:57:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7eaf611c298322ce8413ae298458d58309329f4c",
"body": null,
"is_bot": false,
"headline": "(fix): add full object test",
"author_name": "ilan-gold",
"author_login": "ilan-gold",
"committed_at": "2024-10-16T10:55:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9a4c931890ff3ad0b391aad102338ee2f3513dea",
"body": null,
"is_bot": false,
"headline": "Black formatting",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-16T10:53:12Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3af3502488cd60502494e8e5a71aca2aef5e35d7",
"body": null,
"is_bot": false,
"headline": "Fix filter_obs and filter_var to work with the latest anndata",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-16T10:51:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5e9d80fe222ee6ddc9a77d34667310f028143f1c",
"body": null,
"is_bot": false,
"headline": "Compatibility with NumPy v2 to fix CI",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-10-16T09:42:30Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b771af720254ad517c3a511f8deb60a80d475e4b",
"body": null,
"is_bot": false,
"headline": "(fix): use `item`",
"author_name": "ilan-gold",
"author_login": "ilan-gold",
"committed_at": "2024-10-15T10:30:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9aaeac271017af172e61c3d9c6108ef90f9ab95c",
"body": null,
"is_bot": false,
"headline": "(fix): try bigger",
"author_name": "ilan-gold",
"author_login": "ilan-gold",
"committed_at": "2024-10-15T10:26:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2f3b85fb47bc55de246375d672cd1be8127f0daa",
"body": null,
"is_bot": false,
"headline": "(fix): try bigger tol",
"author_name": "ilan-gold",
"author_login": "ilan-gold",
"committed_at": "2024-10-15T10:23:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "763edcc097911e47e988db51c6ea516ca1784e41",
"body": null,
"is_bot": false,
"headline": "(fix): use strings for versions",
"author_name": "ilan-gold",
"author_login": "ilan-gold",
"committed_at": "2024-10-15T10:21:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9bb369f9de2e5cd93b8a38300fddc59f181100e4",
"body": null,
"is_bot": false,
"headline": "(fix): ci",
"author_name": "ilan-gold",
"author_login": "ilan-gold",
"committed_at": "2024-10-15T10:19:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f3eb615ba354485e6593478969e62506dd0f2f85",
"body": null,
"is_bot": false,
"headline": "(fix): CI branches",
"author_name": "ilan-gold",
"author_login": "ilan-gold",
"committed_at": "2024-10-15T10:17:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5f4ba9ffd22a1dc28df8982bf75e9e6ffd0dcebf",
"body": null,
"is_bot": false,
"headline": "(fix): gitignore file",
"author_name": "ilan-gold",
"author_login": "ilan-gold",
"committed_at": "2024-10-15T10:12:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c2b5988c2ce9ed35d62022275589d08cfb9c4af1",
"body": null,
"is_bot": false,
"headline": "(core): clean up naming",
"author_name": "ilan-gold",
"author_login": "ilan-gold",
"committed_at": "2024-10-15T10:08:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0afc23a69e8c2a2bab9564f91d97f7b58a8b3506",
"body": null,
"is_bot": false,
"headline": "(fix): do proper in-place update",
"author_name": "ilan-gold",
"author_login": "ilan-gold",
"committed_at": "2024-10-15T10:06:29Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "79a20a8e0bfcdebb395cad331fc6bcc852abfb88",
"body": null,
"is_bot": false,
"headline": "(fix): black + add in-place assertion",
"author_name": "ilan-gold",
"author_login": "ilan-gold",
"committed_at": "2024-10-15T10:06:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "74cf7a8112397fcb9a02acf53aa821e0fa50e7b3",
"body": null,
"is_bot": false,
"headline": "(chore): fixture",
"author_name": "ilan-gold",
"author_login": "ilan-gold",
"committed_at": "2024-10-15T10:01:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9115a33a9e965df0b825a6c51389dd4ed47099af",
"body": null,
"is_bot": false,
"headline": "(fix): fix obs filtering",
"author_name": "ilan-gold",
"author_login": "ilan-gold",
"committed_at": "2024-10-15T09:58:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "782d85c5ba96bbd2c944cc62377932175f87c5b5",
"body": null,
"is_bot": false,
"headline": "Use `counts` instead of `adata.X`",
"author_name": "Robrecht Cannoodt",
"author_login": "rcannood",
"committed_at": "2024-10-11T13:00:29Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a5ddb506a6f7457e2f41dfa05fb3a20628b47b54",
"body": null,
"is_bot": false,
"headline": "fixed reference to chromsome column",
"author_name": "rushil-chakra",
"author_login": "Rushil-Chakra",
"committed_at": "2024-04-17T23:22:33Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "94917d23291f329a19b3c282276c960d414319ad",
"body": null,
"is_bot": false,
"headline": "Attempt to fix RTD dependencies",
"author_name": "gtca",
"author_login": "gtca",
"committed_at": "2024-04-09T09:16:19Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "943f31ce060804c79e45694401d389ac13317020",
"body": null,
"is_bot": false,
"headline": "Attempt to solve dependency conflict",
"author_name": "gtca",
"author_login": "gtca",
"committed_at": "2024-04-09T09:14:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "751adc945d6cf2d9e361b584516c655accb0bd8c",
"body": null,
"is_bot": false,
"headline": "Add more requirements to build the docs",
"author_name": "gtca",
"author_login": "gtca",
"committed_at": "2024-04-09T09:11:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "009c900b9e28ef05fdcf7c241d47a9ff9397f2ba",
"body": null,
"is_bot": false,
"headline": "Adopt new config format for RTD requirements",
"author_name": "gtca",
"author_login": "gtca",
"committed_at": "2024-04-09T09:00:23Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "58c3a134a9629347e26e12ac9a318ea37cc0af9b",
"body": null,
"is_bot": false,
"headline": "Update RTD config",
"author_name": "gtca",
"author_login": "gtca",
"committed_at": "2024-04-09T08:53:42Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d63d7b131f8c97f409560995e00b765c69b3601a",
"body": null,
"is_bot": false,
"headline": "Update RTD config to build docs",
"author_name": "gtca",
"author_login": "gtca",
"committed_at": "2024-04-09T08:52:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3dace03c55a10451165681481c2ab1d8fe433a54",
"body": "scanpy 1.10 compat + PR CI",
"is_bot": false,
"headline": "Merge pull request #136 from scverse/fix-plus",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2024-04-09T08:46:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e96c810db8d6d90f84f349b967b43c30139cbfb5",
"body": null,
"is_bot": false,
"headline": "v0.1.6",
"author_name": "gtca",
"author_login": "gtca",
"committed_at": "2024-04-09T08:43:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7d010fa36a869c6e7667d6bc4bab051aee726e28",
"body": null,
"is_bot": false,
"headline": "resolve properly",
"author_name": "Philipp A",
"author_login": "flying-sheep",
"committed_at": "2024-04-05T07:24:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6cb6a9bd61857476e745cb7520a84712803ae131",
"body": null,
"is_bot": false,
"headline": "fail slow",
"author_name": "Isaac Virshup",
"author_login": "ivirshup",
"committed_at": "2024-03-28T19:29:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c2713919384e9838caea0993a7e4c94a0ac812e6",
"body": null,
"is_bot": false,
"headline": "Clean up package installation during testing",
"author_name": "Isaac Virshup",
"author_login": "ivirshup",
"committed_at": "2024-03-28T19:24:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d29fdb62db5fbe6790db79a2283c6f41e4f1c881",
"body": null,
"is_bot": false,
"headline": "do it better",
"author_name": "Isaac Virshup",
"author_login": "ivirshup",
"committed_at": "2024-03-28T19:16:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "140c54b7132ff8f6de7392b63d45d42062c57e9c",
"body": null,
"is_bot": false,
"headline": "scanpy<1.10 compat",
"author_name": "Isaac Virshup",
"author_login": "ivirshup",
"committed_at": "2024-03-28T19:12:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b4fccbb4904c5b62033dcc9d4488a74a953ff308",
"body": null,
"is_bot": false,
"headline": "release note",
"author_name": "Isaac Virshup",
"author_login": "ivirshup",
"committed_at": "2024-03-28T18:59:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fec79b76cdc02007843f42ebba9a1b7e31d81cbd",
"body": null,
"is_bot": false,
"headline": "update CI to run on PRs",
"author_name": "Isaac Virshup",
"author_login": "ivirshup",
"committed_at": "2024-03-28T18:21:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8182f6ce0027d088a03cf04924765567a9ec77fc",
"body": null,
"is_bot": false,
"headline": "force color to be a string",
"author_name": "SarahOuologuem",
"author_login": null,
"committed_at": "2024-03-11T09:21:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5f861e64a6f259eb9a30db4ff6aef65d1d29ce54",
"body": null,
"is_bot": false,
"headline": "Merge remote-tracking branch 'refs/remotes/origin/master'",
"author_name": "Miles Smith",
"author_login": null,
"committed_at": "2024-01-19T19:10:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7ceb570fe77f56da8740efd630b70a68d7821221",
"body": null,
"is_bot": false,
"headline": "fix for `_choose_representation` arguments",
"author_name": "Miles Smith",
"author_login": null,
"committed_at": "2024-01-19T19:08:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "247b81acaffc813294c19933f1eabf9bba149ba2",
"body": null,
"is_bot": false,
"headline": "Change for black",
"author_name": "Miles Smith",
"author_login": "milescsmith",
"committed_at": "2024-01-18T19:44:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "53487a3d4049b65a37a92c93f87cd6a377c5cbea",
"body": "…anpy.neighbors._connectivity.umap`",
"is_bot": false,
"headline": "FIX: replace `scanpy.neighbors._compute_connectivities_umap` with `sc…",
"author_name": "Miles Smith",
"author_login": null,
"committed_at": "2024-01-18T19:37:48Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "61942d63bae0c7674603ac30d69ded69eec133e1",
"body": "Fixes scverse/muon#111",
"is_bot": false,
"headline": "Merge pull request #112 from russellgould/fix_mofa_boolean_indexing",
"author_name": "Danila",
"author_login": "gtca",
"committed_at": "2023-09-11T14:09:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6611b58758080dc6d7c455feef6a44545233e0d3",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Danila Bredikhin",
"author_login": "gtca",
"committed_at": "2023-09-07T11:59:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5f53e0e0eedcc91b011a9b41af40538bee860f10",
"body": null,
"is_bot": false,
"headline": "Update NumFOCUS attribution in README.md",
"author_name": "Danila Bredikhin",
"author_login": "gtca",
"committed_at": "2023-09-07T11:46:35Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6192f7698d8f3eca39412cd63699ef0b6a927d64",
"body": "Add NumFocus logo and text",
"is_bot": false,
"headline": "Merge pull request #117 from mikelkou/Add-NumFocus-logo-and-text",
"author_name": "Gregor Sturm",
"author_login": "grst",
"committed_at": "2023-08-04T07:50:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "de31cf5d962149c0323734c3698e20ae62e1ea61",
"body": null,
"is_bot": false,
"headline": "Add NumFocus logo and text",
"author_name": "mikelkou",
"author_login": "mikelkou",
"committed_at": "2023-08-03T15:50:50Z",
"body_truncated": false,
"is_coding_agent": false
}
],
"releases_count": 8,
"commits_last_year": 27,
"latest_release_at": "2024-10-30T09:58:51Z",
"latest_release_tag": "v0.1.7",
"releases_from_tags": false,
"days_since_last_push": 3,
"active_weeks_last_year": 13,
"days_since_latest_release": 635,
"mean_days_between_releases": 177.2
},
"community": {
"has_readme": true,
"has_license": true,
"has_description": true,
"has_contributing": true,
"health_percentage": 75,
"has_issue_template": false,
"has_code_of_conduct": true,
"has_pull_request_template": false
},
"ecosystem": {
"packages": []
},
"popularity": {
"forks": 37,
"stars": 277,
"watchers": 10,
"fork_history": {
"days": [
{
"date": "2021-05-26",
"count": 1
},
{
"date": "2021-06-15",
"count": 1
},
{
"date": "2021-08-19",
"count": 1
},
{
"date": "2021-10-14",
"count": 1
},
{
"date": "2022-01-21",
"count": 1
},
{
"date": "2022-03-02",
"count": 1
},
{
"date": "2022-04-17",
"count": 1
},
{
"date": "2022-04-27",
"count": 1
},
{
"date": "2022-06-22",
"count": 1
},
{
"date": "2022-08-31",
"count": 1
},
{
"date": "2022-09-09",
"count": 1
},
{
"date": "2022-09-16",
"count": 1
},
{
"date": "2022-11-09",
"count": 1
},
{
"date": "2023-01-31",
"count": 1
},
{
"date": "2023-03-03",
"count": 1
},
{
"date": "2023-06-20",
"count": 1
},
{
"date": "2023-06-27",
"count": 1
},
{
"date": "2023-08-03",
"count": 1
},
{
"date": "2023-09-26",
"count": 1
},
{
"date": "2023-11-01",
"count": 1
},
{
"date": "2023-11-17",
"count": 1
},
{
"date": "2023-11-30",
"count": 1
},
{
"date": "2023-12-10",
"count": 1
},
{
"date": "2024-03-11",
"count": 1
},
{
"date": "2024-03-22",
"count": 1
},
{
"date": "2024-04-11",
"count": 1
},
{
"date": "2024-04-17",
"count": 1
},
{
"date": "2024-08-20",
"count": 1
},
{
"date": "2024-08-24",
"count": 1
},
{
"date": "2024-11-08",
"count": 1
},
{
"date": "2025-02-04",
"count": 1
},
{
"date": "2025-11-10",
"count": 1
},
{
"date": "2026-01-15",
"count": 1
},
{
"date": "2026-03-25",
"count": 1
},
{
"date": "2026-04-08",
"count": 1
},
{
"date": "2026-06-15",
"count": 1
},
{
"date": "2026-06-22",
"count": 1
}
],
"complete": true,
"collected": 37,
"total_forks": 37
},
"star_history": null,
"open_issues_and_prs": 44
},
"ai_readiness": {
"has_nix": false,
"example_dirs": [
"notebooks"
],
"has_llms_txt": false,
"has_dockerfile": false,
"has_mcp_signal": false,
"bootstrap_files": [
"docs/Makefile"
],
"api_schema_files": [],
"has_devcontainer": false,
"typecheck_configs": [],
"toolchain_manifests": [],
"largest_source_bytes": 52400,
"source_files_sampled": 31,
"oversized_source_files": 0,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"dependencies": {
"manifests": [
"docs/requirements.txt",
"pyproject.toml"
],
"advisories": {
"error": null,
"scope": "repository_graph",
"source": "osv",
"findings": [],
"collected": true,
"malicious": [],
"truncated": false,
"by_severity": {},
"advisory_count": 0,
"affected_count": 0,
"assessed_count": 9,
"malicious_count": 0,
"assessed_package": null,
"unassessed_count": 1,
"direct_affected_count": 0
},
"ecosystems": [
"pypi"
],
"dependencies": [],
"all_dependencies": {
"error": null,
"source": "github-sbom",
"packages": [
{
"name": "commonmark",
"direct": false,
"version": "0.9.1",
"ecosystem": "pypi"
},
{
"name": "muon",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "nbsphinx",
"direct": false,
"version": "0.9.3",
"ecosystem": "pypi"
},
{
"name": "pydata-sphinx-theme",
"direct": false,
"version": "0.15.2",
"ecosystem": "pypi"
},
{
"name": "readthedocs-sphinx-search",
"direct": false,
"version": "0.3.2",
"ecosystem": "pypi"
},
{
"name": "recommonmark",
"direct": false,
"version": "0.7.1",
"ecosystem": "pypi"
},
{
"name": "sphinx",
"direct": false,
"version": "7.2.6",
"ecosystem": "pypi"
},
{
"name": "sphinx-automodapi",
"direct": false,
"version": "0.17.0",
"ecosystem": "pypi"
},
{
"name": "sphinx-book-theme",
"direct": false,
"version": "1.1.2",
"ecosystem": "pypi"
},
{
"name": "sphinx-rtd-theme",
"direct": false,
"version": "2.0.0",
"ecosystem": "pypi"
}
],
"collected": true,
"truncated": false,
"total_count": 10,
"direct_count": 0,
"indirect_count": 10
}
},
"maintainership": {
"issues": {
"open_prs": 9,
"merged_prs": 40,
"open_issues": 35,
"closed_ratio": 0.768,
"closed_issues": 116,
"closed_unmerged_prs": 2
},
"bus_factor": 1,
"bot_contributors": 0,
"top_contributors": [
{
"type": "User",
"login": "gtca",
"commits": 434,
"avatar_url": "https://avatars.githubusercontent.com/u/32863903?v=4"
},
{
"type": "User",
"login": "ilia-kats",
"commits": 105,
"avatar_url": "https://avatars.githubusercontent.com/u/3499574?v=4"
},
{
"type": "User",
"login": "mffrank",
"commits": 23,
"avatar_url": "https://avatars.githubusercontent.com/u/18049979?v=4"
},
{
"type": "User",
"login": "ilan-gold",
"commits": 14,
"avatar_url": "https://avatars.githubusercontent.com/u/43999641?v=4"
},
{
"type": "User",
"login": "ivirshup",
"commits": 6,
"avatar_url": "https://avatars.githubusercontent.com/u/8238804?v=4"
},
{
"type": "User",
"login": "Zethson",
"commits": 5,
"avatar_url": "https://avatars.githubusercontent.com/u/21954664?v=4"
},
{
"type": "User",
"login": "WeilerP",
"commits": 4,
"avatar_url": "https://avatars.githubusercontent.com/u/28675704?v=4"
},
{
"type": "User",
"login": "melonora",
"commits": 3,
"avatar_url": "https://avatars.githubusercontent.com/u/22346363?v=4"
},
{
"type": "User",
"login": "bv2",
"commits": 3,
"avatar_url": "https://avatars.githubusercontent.com/u/24564697?v=4"
},
{
"type": "User",
"login": "grst",
"commits": 2,
"avatar_url": "https://avatars.githubusercontent.com/u/7051479?v=4"
}
],
"contributors_sampled": 23,
"top_contributor_share": 0.709
},
"quality_signals": {
"has_ci": true,
"has_tests": true,
"ci_workflows": [
"black.yml",
"pythonpackage.yml",
"release.yaml"
],
"has_docs_dir": true,
"linter_configs": [],
"has_editorconfig": true,
"has_linter_config": true,
"has_precommit_config": true
},
"security_signals": {
"lockfiles": [],
"scorecard": {
"checks": [
{
"name": "Binary-Artifacts",
"score": 10,
"reason": "no binaries found in the repo",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
},
{
"name": "Branch-Protection",
"score": 3,
"reason": "branch protection is not maximal on development and all release branches",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
},
{
"name": "CI-Tests",
"score": 7,
"reason": "7 out of 10 merged PRs checked by a CI test -- score normalized to 7",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
},
{
"name": "CII-Best-Practices",
"score": 0,
"reason": "no effort to earn an OpenSSF best practices badge detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
},
{
"name": "Code-Review",
"score": 3,
"reason": "Found 9/24 approved changesets -- score normalized to 3",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
},
{
"name": "Contributors",
"score": 10,
"reason": "project has 17 contributing companies or organizations",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
},
{
"name": "Dangerous-Workflow",
"score": 10,
"reason": "no dangerous workflow patterns detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
},
{
"name": "Dependency-Update-Tool",
"score": 0,
"reason": "no update tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
},
{
"name": "Fuzzing",
"score": 0,
"reason": "project is not fuzzed",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
},
{
"name": "License",
"score": 10,
"reason": "license file detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
},
{
"name": "Maintained",
"score": 8,
"reason": "9 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 8",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
},
{
"name": "Packaging",
"score": 10,
"reason": "packaging workflow detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
},
{
"name": "Pinned-Dependencies",
"score": 3,
"reason": "dependency not pinned by hash detected -- score normalized to 3",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
},
{
"name": "SAST",
"score": 0,
"reason": "SAST tool is not run on all commits -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
},
{
"name": "Security-Policy",
"score": 0,
"reason": "security policy file not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
},
{
"name": "Signed-Releases",
"score": null,
"reason": "no releases found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
},
{
"name": "Token-Permissions",
"score": 0,
"reason": "detected GitHub workflow tokens with excessive permissions",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
},
{
"name": "Vulnerabilities",
"score": 10,
"reason": "0 existing vulnerabilities detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
}
],
"commit": "05d3bf11f55ccc656e2f10a1466e185b0302aa52",
"ran_at": "2026-07-27T21:42:55Z",
"aggregate_score": 5,
"scorecard_version": "v5.5.0"
},
"has_codeql_workflow": false,
"has_security_policy": false,
"has_dependabot_config": false
},
"contribution_flow": {
"collected": true,
"ci_last_run_at": "2026-07-23T16:16:53Z",
"oldest_open_prs": [
{
"number": 20,
"created_at": "2020-12-17T22:45:02Z",
"last_comment_at": "2023-01-29T20:08:37Z",
"last_comment_author": "review-notebook-app"
},
{
"number": 143,
"created_at": "2024-05-30T21:21:34Z",
"last_comment_at": "2024-05-30T21:26:17Z",
"last_comment_author": "mbuttner"
},
{
"number": 151,
"created_at": "2024-10-25T09:19:54Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 152,
"created_at": "2024-11-08T12:30:21Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 155,
"created_at": "2024-12-13T21:57:56Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 166,
"created_at": "2025-08-14T14:46:42Z",
"last_comment_at": "2025-10-10T12:07:14Z",
"last_comment_author": "ilan-gold"
},
{
"number": 167,
"created_at": "2025-08-15T14:35:46Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 184,
"created_at": "2026-04-08T01:20:06Z",
"last_comment_at": "2026-05-07T12:30:45Z",
"last_comment_author": "Ekin-Kahraman"
},
{
"number": 214,
"created_at": "2026-07-23T18:06:20Z",
"last_comment_at": "2026-07-27T08:26:32Z",
"last_comment_author": "Zethson"
}
],
"last_merged_pr_at": "2026-07-23T16:16:20Z",
"ci_last_conclusion": "FAILURE",
"oldest_open_issues": [
{
"number": 19,
"created_at": "2020-12-14T14:21:24Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 31,
"created_at": "2021-06-21T14:32:34Z",
"last_comment_at": "2021-07-06T13:36:07Z",
"last_comment_author": "gtca"
},
{
"number": 45,
"created_at": "2021-12-06T18:55:32Z",
"last_comment_at": "2021-12-06T19:39:45Z",
"last_comment_author": "ivirshup"
},
{
"number": 54,
"created_at": "2022-04-08T12:49:13Z",
"last_comment_at": "2022-04-26T13:14:22Z",
"last_comment_author": "gtca"
},
{
"number": 59,
"created_at": "2022-05-21T18:02:53Z",
"last_comment_at": "2022-06-28T17:28:38Z",
"last_comment_author": "kchiou"
},
{
"number": 60,
"created_at": "2022-05-25T10:53:17Z",
"last_comment_at": "2022-06-27T19:11:36Z",
"last_comment_author": "gtca"
},
{
"number": 64,
"created_at": "2022-07-01T10:44:57Z",
"last_comment_at": "2022-07-01T13:24:54Z",
"last_comment_author": "gtca"
},
{
"number": 68,
"created_at": "2022-08-03T01:39:30Z",
"last_comment_at": "2022-08-03T12:14:23Z",
"last_comment_author": "Chengwei94"
},
{
"number": 81,
"created_at": "2022-12-15T05:56:34Z",
"last_comment_at": "2023-02-21T04:35:21Z",
"last_comment_author": "gabumon0"
},
{
"number": 87,
"created_at": "2023-01-09T00:55:08Z",
"last_comment_at": "2023-01-09T11:52:37Z",
"last_comment_author": "gtca"
},
{
"number": 90,
"created_at": "2023-01-28T18:42:23Z",
"last_comment_at": "2023-01-29T19:36:09Z",
"last_comment_author": "gtca"
},
{
"number": 92,
"created_at": "2023-02-03T23:16:21Z",
"last_comment_at": "2023-02-21T04:01:42Z",
"last_comment_author": "gtca"
},
{
"number": 97,
"created_at": "2023-03-15T15:04:30Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 98,
"created_at": "2023-03-29T14:11:20Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 103,
"created_at": "2023-04-28T11:51:56Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 110,
"created_at": "2023-06-12T13:47:48Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 113,
"created_at": "2023-06-25T12:30:31Z",
"last_comment_at": "2023-06-26T10:08:32Z",
"last_comment_author": "gtca"
},
{
"number": 119,
"created_at": "2023-08-04T14:42:48Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 122,
"created_at": "2023-08-23T12:41:25Z",
"last_comment_at": "2024-10-22T13:23:38Z",
"last_comment_author": "dawe"
},
{
"number": 123,
"created_at": "2023-08-23T16:06:31Z",
"last_comment_at": "2025-08-15T12:12:06Z",
"last_comment_author": "ilia-kats"
}
]
}
},
"config": {
"disabled_metrics": [],
"disabled_categories": [],
"disabled_components": {}
},
"source": {
"url": "https://github.com/scverse/muon",
"host": "github.com",
"name": "muon",
"owner": "scverse"
},
"metrics": {
"overall": {
"key": "overall",
"band": "moderate",
"name": "Overall health",
"note": null,
"notes": [],
"value": 69,
"inputs": {
"security": 60,
"vitality": 60,
"community": 71,
"governance": 62,
"engineering": 92
},
"components": []
},
"categories": [
{
"key": "vitality",
"band": "moderate",
"name": "Vitality",
"value": 60,
"weight": 0.22,
"metrics": [
{
"key": "development_activity",
"band": "moderate",
"name": "Development activity",
"note": null,
"notes": [],
"value": 66,
"inputs": {
"commits_last_year": 27,
"human_commit_share": 1,
"days_since_last_push": 3,
"active_weeks_last_year": 13
},
"components": [
{
"key": "push_recency",
"name": "Push recency",
"detail": "last push 3 days ago",
"points": 36,
"status": "met",
"details": [
{
"code": "push_recency",
"params": {
"days": 3
}
}
],
"max_points": 36
},
{
"key": "commit_cadence",
"name": "Commit cadence",
"detail": "13/52 weeks with commits",
"points": 9,
"status": "partial",
"details": [
{
"code": "commit_cadence_weeks",
"params": {
"weeks": 13
}
}
],
"max_points": 36
},
{
"key": "commit_volume",
"name": "Commit volume",
"detail": "27 commits in the last year",
"points": 13,
"status": "partial",
"details": [
{
"code": "commits_last_year",
"params": {
"count": 27
}
}
],
"max_points": 18
},
{
"key": "openssf_scorecard_maintained",
"name": "OpenSSF Scorecard: Maintained",
"detail": "9 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 8",
"points": 8,
"status": "partial",
"details": [],
"max_points": 10
}
]
},
{
"key": "release_discipline",
"band": "moderate",
"name": "Release discipline",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 52,
"inputs": {
"releases_count": 8,
"latest_release_tag": "v0.1.7",
"releases_from_tags": false,
"days_since_latest_release": 635,
"mean_days_between_releases": 177.2
},
"components": [
{
"key": "ships_releases",
"name": "Ships releases",
"detail": "8 releases published",
"points": 27,
"status": "met",
"details": [
{
"code": "releases_published",
"params": {
"count": 8
}
}
],
"max_points": 27
},
{
"key": "release_recency",
"name": "Release recency",
"detail": "latest release 635 days ago",
"points": 7.2,
"status": "partial",
"details": [
{
"code": "release_recency",
"params": {
"days": 635
}
}
],
"max_points": 36
},
{
"key": "release_cadence",
"name": "Release cadence",
"detail": "a release every ~177.2 days",
"points": 12.6,
"status": "partial",
"details": [
{
"code": "release_cadence",
"params": {
"gap": 177.2
}
}
],
"max_points": 27
},
{
"key": "openssf_scorecard_signed_releases",
"name": "OpenSSF Scorecard: Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
}
]
},
{
"key": "abandonment",
"band": "excellent",
"name": "Abandonment",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"cap": null,
"state": "maintained",
"guards": [],
"signals": [],
"red_flag": false,
"multiplier_pct": 100,
"declared_reason": null,
"unverified_reason": null,
"unanswered_open_prs": null,
"unanswered_open_issues": null,
"days_since_last_merged_pr": null,
"days_since_last_human_commit": 9,
"days_since_last_human_commit_is_floor": false
},
"components": [
{
"key": "project_is_still_maintained",
"name": "Project is still maintained",
"detail": "last human commit 9 days ago",
"points": 100,
"status": "met",
"details": [
{
"code": "abandonment_maintained",
"params": {
"days": 9
}
}
],
"max_points": 100
}
]
}
],
"description": "Is the project alive — is code being written and are releases shipping?"
},
{
"key": "community",
"band": "good",
"name": "Community & Adoption",
"value": 71,
"weight": 0.18,
"metrics": [
{
"key": "popularity",
"band": "moderate",
"name": "Popularity & adoption",
"note": null,
"notes": [],
"value": 58,
"inputs": {
"forks": 37,
"stars": 277,
"watchers": 10,
"growth_state": "unverified",
"growth_factor_pct": 100,
"growth_unverified_reason": "no_history"
},
"components": [
{
"key": "stars",
"name": "Stars",
"detail": "277 stars",
"points": 39.6,
"status": "partial",
"details": [
{
"code": "stars",
"params": {
"count": 277
}
}
],
"max_points": 60
},
{
"key": "forks",
"name": "Forks",
"detail": "37 forks",
"points": 13,
"status": "partial",
"details": [
{
"code": "forks",
"params": {
"count": 37
}
}
],
"max_points": 25
},
{
"key": "watchers",
"name": "Watchers",
"detail": "10 watchers",
"points": 5.3,
"status": "partial",
"details": [
{
"code": "watchers",
"params": {
"count": 10
}
}
],
"max_points": 15
}
]
},
{
"key": "community_health",
"band": "excellent",
"name": "Community health",
"note": null,
"notes": [],
"value": 85,
"inputs": {
"has_readme": true,
"has_license": true,
"has_contributing": true,
"has_issue_template": false,
"has_code_of_conduct": true,
"has_pull_request_template": false
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 22.5,
"status": "met",
"details": [],
"max_points": 22.5
},
{
"key": "license",
"name": "License",
"detail": "recognized license (BSD-3-Clause)",
"points": 22.5,
"status": "met",
"details": [
{
"code": "license_standard",
"params": {}
},
{
"code": "license_spdx",
"params": {
"spdx": "BSD-3-Clause"
}
}
],
"max_points": 22.5
},
{
"key": "contributing_guide",
"name": "CONTRIBUTING guide",
"detail": null,
"points": 18,
"status": "met",
"details": [],
"max_points": 18
},
{
"key": "code_of_conduct",
"name": "Code of conduct",
"detail": null,
"points": 13.5,
"status": "met",
"details": [],
"max_points": 13.5
},
{
"key": "issue_template",
"name": "Issue template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.2
},
{
"key": "pr_template",
"name": "PR template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.3
}
]
}
],
"description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
},
{
"key": "governance",
"band": "moderate",
"name": "Sustainability & Governance",
"value": 62,
"weight": 0.24,
"metrics": [
{
"key": "maintainer_resilience",
"band": "at_risk",
"name": "Maintainer resilience (bus factor)",
"note": null,
"notes": [],
"value": 39,
"inputs": {
"bus_factor": 1,
"contributors_sampled": 23,
"top_contributor_share": 0.709
},
"components": [
{
"key": "bus_factor",
"name": "Bus factor",
"detail": "1 contributor(s) cover half of all commits",
"points": 9,
"status": "partial",
"details": [
{
"code": "bus_factor",
"params": {
"count": 1
}
}
],
"max_points": 54
},
{
"key": "commit_distribution",
"name": "Commit distribution",
"detail": "top contributor authored 71% of commits",
"points": 6.5,
"status": "partial",
"details": [
{
"code": "top_contributor_share",
"params": {
"share": 71
}
}
],
"max_points": 22.5
},
{
"key": "contributor_breadth",
"name": "Contributor breadth",
"detail": "23 contributors",
"points": 13.5,
"status": "met",
"details": [
{
"code": "contributors_sampled",
"params": {
"count": 23
}
}
],
"max_points": 13.5
},
{
"key": "openssf_scorecard_contributors",
"name": "OpenSSF Scorecard: Contributors",
"detail": "project has 17 contributing companies or organizations",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "good",
"name": "Issue & PR responsiveness",
"note": null,
"notes": [],
"value": 77,
"inputs": {
"merged_prs": 40,
"open_issues": 35,
"closed_issues": 116,
"issue_closed_ratio": 0.768,
"closed_unmerged_prs": 2
},
"components": [
{
"key": "issue_resolution",
"name": "Issue resolution",
"detail": "77% of issues closed",
"points": 35.9,
"status": "partial",
"details": [
{
"code": "issues_closed_share",
"params": {
"share": 77
}
}
],
"max_points": 46.75
},
{
"key": "pr_acceptance",
"name": "PR acceptance",
"detail": "40/42 decided PRs merged",
"points": 36.4,
"status": "partial",
"details": [
{
"code": "decided_prs_merged",
"params": {
"merged": 40,
"decided": 42
}
}
],
"max_points": 38.25
},
{
"key": "openssf_scorecard_code_review",
"name": "OpenSSF Scorecard: Code-Review",
"detail": "Found 9/24 approved changesets -- score normalized to 3",
"points": 4.5,
"status": "partial",
"details": [],
"max_points": 15
}
]
},
{
"key": "stewardship",
"band": "good",
"name": "Ownership & stewardship",
"note": null,
"notes": [],
"value": 75,
"inputs": {
"followers": 1520,
"owner_type": "Organization",
"is_verified": null,
"owner_login": "scverse",
"public_repos": 87,
"account_age_days": 1700
},
"components": [
{
"key": "ownership_backing",
"name": "Ownership backing",
"detail": "organization-owned",
"points": 30,
"status": "met",
"details": [
{
"code": "owner_organization",
"params": {}
}
],
"max_points": 30
},
{
"key": "verified_domain",
"name": "Verified domain",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "owner_reach",
"name": "Owner reach",
"detail": "1,520 followers of scverse",
"points": 22.9,
"status": "partial",
"details": [
{
"code": "owner_followers",
"params": {
"count": 1520,
"login": "scverse"
}
}
],
"max_points": 25
},
{
"key": "track_record",
"name": "Track record",
"detail": "87 public repos, account ~4 yr old",
"points": 22.3,
"status": "partial",
"details": [
{
"code": "public_repos",
"params": {
"count": 87
}
},
{
"code": "account_age_years",
"params": {
"years": 4
}
}
],
"max_points": 25
}
]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "excellent",
"name": "Engineering Quality",
"value": 92,
"weight": 0.2,
"metrics": [
{
"key": "engineering_practices",
"band": "excellent",
"name": "Engineering practices",
"note": null,
"notes": [],
"value": 94,
"inputs": {
"has_ci": true,
"has_tests": true,
"has_editorconfig": true,
"has_linter_config": true,
"has_precommit_config": true
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": "3 workflow(s)",
"points": 24,
"status": "met",
"details": [
{
"code": "ci_workflows",
"params": {
"count": 3
}
}
],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 24,
"status": "met",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": null,
"points": 16,
"status": "met",
"details": [],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 9.6,
"status": "met",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 6.4,
"status": "met",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "7 out of 10 merged PRs checked by a CI test -- score normalized to 7",
"points": 14,
"status": "partial",
"details": [],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "excellent",
"name": "Documentation",
"note": null,
"notes": [],
"value": 90,
"inputs": {
"topics": [
"multimodal-data",
"multimodal-omics-analysis",
"multi-omics",
"anndata",
"scanpy",
"mudata",
"muon",
"scrna-seq",
"scatac-seq",
"cite-seq",
"scverse"
],
"has_wiki": false,
"homepage": "https://muon.scverse.org/",
"has_readme": true,
"has_docs_dir": true,
"has_description": true
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 30,
"status": "met",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 25,
"status": "met",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": "https://muon.scverse.org/",
"points": 15,
"status": "met",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": "11 topics",
"points": 10,
"status": "met",
"details": [
{
"code": "topics_count",
"params": {
"count": 11
}
}
],
"max_points": 10
},
{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "moderate",
"name": "Security",
"value": 60,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "moderate",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 50,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 17,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 1,
"scorecard_aggregate": 5
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "branch protection is not maximal on development and all release branches",
"points": 2.2,
"status": "partial",
"details": [],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "7 out of 10 merged PRs checked by a CI test -- score normalized to 7",
"points": 1.8,
"status": "partial",
"details": [],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 9/24 approved changesets -- score normalized to 3",
"points": 2.2,
"status": "partial",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 17 contributing companies or organizations",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no dangerous workflow patterns detected",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "no update tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "9 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 8",
"points": 6,
"status": "partial",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow detected",
"points": 5,
"status": "met",
"details": [],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 3",
"points": 1.5,
"status": "partial",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "SAST tool is not run on all commits -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "detected GitHub workflow tokens with excessive permissions",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "0 existing vulnerabilities detected",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "dependency_advisories",
"band": "excellent",
"name": "Dependency advisories",
"note": "Excluded from scoring (no data or not applicable): Indirect dependencies free of known advisories, No advisories left outstanding. Remaining weights renormalized. Matched 9 resolved dependencies against OSV; 1 could not be assessed (no resolved version, an unsupported ecosystem, or beyond the reported package list). This repository publishes no package the index resolves, so the repository dependency graph was assessed instead. That graph mixes development and test pins with shipped dependencies, so only the declared runtime dependencies are scored; transitive findings are reported as context and excluded from the score. Reachability is not analyzed.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"indirect_dependencies_free_of_known_advisories",
"no_advisories_left_outstanding"
]
}
},
{
"code": "weights_renormalized",
"params": {}
},
{
"code": "advisories_scope_repository",
"params": {
"assessed": 9
}
},
{
"code": "advisories_unassessed",
"params": {
"count": 1
}
},
{
"code": "advisories_repo_graph_caveat",
"params": {}
},
{
"code": "advisories_reachability",
"params": {}
}
],
"value": 100,
"inputs": {
"source": "osv",
"advisories": 0,
"affected_packages": 0,
"assessed_packages": 9,
"unassessed_packages": 1,
"affected_by_severity": "none",
"direct_affected_packages": 0
},
"components": [
{
"key": "direct_dependencies_free_of_known_advisories",
"name": "Direct dependencies free of known advisories",
"detail": "no direct dependency carries a known advisory",
"points": 35,
"status": "met",
"details": [
{
"code": "no_direct_advisories",
"params": {}
}
],
"max_points": 35
},
{
"key": "indirect_dependencies_free_of_known_advisories",
"name": "Indirect dependencies free of known advisories",
"detail": "transitive set not separable from development and test dependencies in this scope",
"points": 0,
"status": "excluded",
"details": [
{
"code": "advisories_scope_not_separable",
"params": {}
}
],
"max_points": 25
},
{
"key": "no_advisories_left_outstanding",
"name": "No advisories left outstanding",
"detail": "no advisory carries a publication date",
"points": 0,
"status": "excluded",
"details": [
{
"code": "advisories_no_publication_date",
"params": {}
}
],
"max_points": 40
}
]
},
{
"key": "malicious_dependencies",
"band": "excellent",
"name": "Malicious dependencies",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"source": "osv",
"meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
"packages": [],
"red_flag": false,
"assessed_packages": 9,
"malicious_packages": 0,
"direct_malicious_packages": 0,
"withdrawn_malicious_packages": 0,
"installable_malicious_packages": 0
},
"components": [
{
"key": "no_dependency_reported_as_a_malicious_package",
"name": "No dependency reported as a malicious package",
"detail": "no dependency is reported as a malicious package",
"points": 100,
"status": "met",
"details": [
{
"code": "no_malicious_dependencies",
"params": {}
}
],
"max_points": 100
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "excellent",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"commit_weight_rule": {
"min_commits": 50,
"min_commit_share": 0.1
},
"review_only_matches": 0,
"below_threshold_exposures": [],
"assessed_self_published_locations": 12
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "at_risk",
"name": "AI Readiness",
"value": 41,
"weight": 0,
"metrics": [
{
"key": "ai_agent_context",
"band": "critical",
"name": "Agent context & guidance",
"note": null,
"notes": [],
"value": 16,
"inputs": {
"has_llms_txt": false,
"legible_history_share": 0.29,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "legible_commit_history",
"name": "Legible commit history",
"detail": "29 of 100 human commits state their intent (structured subject or explanatory body)",
"points": 15.5,
"status": "partial",
"details": [
{
"code": "legible_history",
"params": {
"legible": 29,
"sampled": 100
}
}
],
"max_points": 40
}
]
},
{
"key": "ai_verify_loop",
"band": "moderate",
"name": "Verify loop (build / test / typecheck)",
"note": null,
"notes": [],
"value": 56,
"inputs": {
"has_nix": false,
"has_tests": true,
"lockfiles": [],
"has_dockerfile": false,
"typed_language": false,
"bootstrap_files": [
"docs/Makefile"
],
"has_devcontainer": false,
"has_linter_config": true,
"typecheck_configs": [],
"agent_commit_share": 0.01,
"toolchain_manifests": [],
"dependency_bot_commit_share": 0
},
"components": [
{
"key": "one_command_bootstrap",
"name": "One-command bootstrap",
"detail": "docs/Makefile",
"points": 18,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "docs/Makefile"
}
}
],
"max_points": 18
},
{
"key": "automated_tests",
"name": "Automated tests",
"detail": null,
"points": 22,
"status": "met",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": null,
"points": 11,
"status": "met",
"details": [],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "1 of the last 100 commits agent-authored or agent-credited",
"points": 2,
"status": "partial",
"details": [
{
"code": "agent_authored_commits",
"params": {
"count": 1,
"sampled": 100
}
}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "no automated dependency updates observed",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_dependency_automation",
"params": {}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 3",
"points": 3,
"status": "partial",
"details": [],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "moderate",
"name": "Code legibility for models",
"note": null,
"notes": [],
"value": 55,
"inputs": {
"primary_language": "Python",
"largest_source_bytes": 52400,
"source_files_sampled": 31,
"oversized_source_files": 0
},
"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "Python without a type-check config",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_typecheck_config_language",
"params": {
"language": "Python"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "0/31 source files over 60KB",
"points": 55,
"status": "met",
"details": [
{
"code": "oversized_source_files",
"params": {
"kb": 60,
"sampled": 31,
"oversized": 0
}
}
],
"max_points": 55
}
]
},
{
"key": "ai_interfaces",
"band": "at_risk",
"name": "Machine-readable interfaces",
"note": null,
"notes": [],
"value": 40,
"inputs": {
"example_dirs": [
"notebooks"
],
"has_mcp_signal": false,
"api_schema_files": []
},
"components": [
{
"key": "api_schema_openapi_graphql_proto",
"name": "API schema (OpenAPI/GraphQL/proto)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 40
},
{
"key": "mcp_server",
"name": "MCP server",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "runnable_examples",
"name": "Runnable examples",
"detail": "notebooks",
"points": 40,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "notebooks"
}
}
],
"max_points": 40
}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.14.0"
},
"warnings": [
"Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token"
],
"report_type": "repository",
"generated_at": "2026-07-27T21:43:24.802373Z",
"schema_version": "0.27.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/s/scverse/muon.svg",
"full_name": "scverse/muon",
"license_state": "standard",
"license_spdx": "BSD-3-Clause"
}Las puntuaciones son señales, no garantías. Reflejan prácticas públicamente visibles en GitHub; no son una auditoría de código ni una garantía de seguridad.
Los datos ausentes se excluyen y los pesos se renormalizan; nunca se puntúan como cero. La metodología es versionada y abierta: métricas v1.14.0, esquema v0.27.0 — metodología completa · wiki de métricas.
Cómo se sitúa un resultado dentro del registro general: estadísticas agregadas.