Public recordModerate
Software health reportschema 0.17.0 · metrics 1.13.0 · 2026-07-21 04:20 UTC
cokelaer / bioservices
Access to Biological Web Services from Python.
cokelaer/bioservices holds a health index of 64 out of 100, placing it in the Moderate band. It scores highest on Engineering Quality (86/100) and lowest on AI Readiness (39/100). It was last updated 38 days ago. A single contributor accounts for most of its recent work.
64
overall / 100Software health index
Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At risk ceiling of 49. AI Readiness sits outside the overall score.
64
Excellent85-100Exemplary; meets essentially all checked criteria
Good70-84Healthy; minor gaps
Moderate50-69Acceptable with notable gaps; review recommended
At risk30-49Significant weaknesses; adoption warrants caution
Critical1-29Severe problems (abandoned, single-maintainer, no hygiene)
Score profile
Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.
Ownership
Thomas CokelaerPersonal account
170 followers74 public repossince May 2011Institut Pasteur
This repository is owned by a personal account. A single-owner project carries more continuity risk than an organization-backed one.
Package ecosystems
| Registry | Package | Version | Downloads / mo | Versions | Last publish | Tags |
|---|---|---|---|---|---|---|
| PyPI | bioservices | 1.16.0 | 36,133 | 79 | 115 days ago | bioserviceswebservicesbiologychebiunichemkeggbiomodelseutilsuniprotpicrarrayexpressmusclequickgopdbblastbiomartpantherdbmiriamgeneprofchemblchemspiderhgncpathwaycommonsrheaensembl |
Metrics by category
Vitality
Is the project alive — is code being written and are releases shipping?
57
Development activity
46At risk
How it's scored
| 18/36 | Push recency — last push 38 days ago |
| 9/36 | Commit cadence — 13/52 weeks with commits |
| 18/18 | Commit volume — 260 commits in the last year |
| 1/10 | OpenSSF Scorecard: Maintained — 2 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 1 |
Inputs used
| commits_last_year | 260 |
| human_commit_share | — |
| days_since_last_push | 38 |
| active_weeks_last_year | 13 |
Release discipline
74Good
How it's scored
| 27/27 | Ships releases — 27 releases published |
| 27/36 | Release recency — latest release 115 days ago |
| 12.6/27 | Release cadence — a release every ~141 days |
| 0/10 | OpenSSF Scorecard: Signed-Releases — no data |
Inputs used
| releases_count | 27 |
| latest_release_tag | v1.16.0 |
| releases_from_tags | no |
| days_since_latest_release | 115 |
| mean_days_between_releases | 141 |
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.
Community & Adoption
Does the project have users, downloads, attention, and a welcoming setup for contributors?
60
Popularity & adoption
63Moderate
How it's scored
| 41/60 | Stars — 340 stars |
| 15.3/25 | Forks — 69 forks |
| 6.5/15 | Watchers — 16 watchers |
Inputs used
| forks | 69 |
| stars | 340 |
| watchers | 16 |
| growth_state | organic |
| growth_factor_pct | 100 |
Community health
44At risk
How it's scored
| 22.5/22.5 | README |
| 16.9/22.5 | License — license file present, not a recognized license |
| 0/18 | CONTRIBUTING guide |
| 0/13.5 | Code of conduct |
| 0/7.2 | Issue template |
| 0/6.3 | PR template |
Inputs used
| has_readme | yes |
| has_license | yes |
| has_contributing | no |
| has_issue_template | no |
| has_code_of_conduct | no |
| has_pull_request_template | no |
How it's scored
| 60.8/80 | Monthly downloads — 36,133 downloads/month across pypi |
| 0/20 | Registry dependents — not reported by this ecosystem |
Inputs used
| packages | bioservices |
| dependents | — |
| ecosystems | pypi |
| total_downloads | — |
| monthly_downloads | 36,133 |
Excluded from scoring (no data or not applicable): Registry dependents. Remaining weights renormalized.
Sustainability & Governance
Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?
67
Maintainer resilience (bus factor)
36At risk
How it's scored
| 9/54 | Bus factor — 1 contributor(s) cover half of all commits |
| 3.7/22.5 | Commit distribution — top contributor authored 84% of commits |
| 13.5/13.5 | Contributor breadth — 27 contributors |
| 10/10 | OpenSSF Scorecard: Contributors — project has 3 contributing companies or organizations -- score normalized to 10 |
Inputs used
| bus_factor | 1 |
| contributors_sampled | 27 |
| top_contributor_share | 0.836 |
How it's scored
| 46.1/46.8 | Issue resolution — 99% of issues closed |
| 33/38.3 | PR acceptance — 112/130 decided PRs merged |
| 0/15 | OpenSSF Scorecard: Code-Review — Found 1/13 approved changesets -- score normalized to 0 |
Inputs used
| merged_prs | 112 |
| open_issues | 3 |
| closed_issues | 214 |
| issue_closed_ratio | 0.986 |
| closed_unmerged_prs | 18 |
Ownership & stewardship
64Moderate
How it's scored
| 10/30 | Ownership backing — personal (user) account |
| 0/20 | Verified domain — not applicable to user accounts |
| 16.1/25 | Owner reach — 170 followers of cokelaer |
| 25/25 | Track record — 74 public repos, account ~15 yr old |
Inputs used
| followers | 170 |
| owner_type | User |
| is_verified | — |
| owner_login | cokelaer |
| public_repos | 74 |
| account_age_days | 5,550 |
Excluded from scoring (no data or not applicable): Verified domain. Remaining weights renormalized.
Package maintenance
100Excellent
How it's scored
| 25/25 | Published & resolvable — 1 package(s) on pypi |
| 35/35 | Publish recency — latest publish 115 days ago |
| 20/20 | Version history — 79 published versions |
| 20/20 | Not deprecated — active, not deprecated or yanked |
Inputs used
| packages | bioservices |
| ecosystems | pypi |
| any_deprecated | no |
| min_days_since_publish | 115 |
Engineering Quality
Are baseline engineering and documentation practices in place?
86
Engineering practices
76Good
How it's scored
| 24/24 | CI workflows — 46 workflow(s) |
| 24/24 | Tests present |
| 16/16 | Linter config |
| 9.6/9.6 | Pre-commit hooks |
| 0/6.4 | .editorconfig |
| 2/20 | OpenSSF Scorecard: CI-Tests — 1 out of 7 merged PRs checked by a CI test -- score normalized to 1 |
Inputs used
| has_ci | yes |
| has_tests | yes |
| has_editorconfig | no |
| has_linter_config | yes |
| has_precommit_config | yes |
Documentation
100Excellent
How it's scored
| 30/30 | README |
| 25/25 | Documentation directory |
| 15/15 | Documentation / homepage site — http://bioservices.readthedocs.io |
| 10/10 | Repository description |
| 10/10 | Topics — 11 topics |
| 10/10 | Wiki |
Inputs used
| topics | kegg, unichem, eutils, chembl, chebi, biomodels, quickgo, uniprot, wikipathways, muscle, python |
| has_wiki | yes |
| homepage | http://bioservices.readthedocs.io |
| has_readme | yes |
| has_docs_dir | yes |
| has_description | yes |
Security
Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?
44
Security posture
37At risk
How it's scored
| 7.5/7.5 | Binary-Artifacts — no binaries found in the repo |
| 0/7.5 | Branch-Protection — branch protection not enabled on development/release branches |
| 0.2/2.5 | CI-Tests — 1 out of 7 merged PRs checked by a CI test -- score normalized to 1 |
| 0.5/2.5 | CII-Best-Practices — badge detected: InProgress |
| 0/7.5 | Code-Review — Found 1/13 approved changesets -- score normalized to 0 |
| 2.5/2.5 | Contributors — project has 3 contributing companies or organizations -- score normalized to 10 |
| 10/10 | Dangerous-Workflow — no dangerous workflow patterns detected |
| 7.5/7.5 | Dependency-Update-Tool — update tool detected |
| 0/5 | Fuzzing — project is not fuzzed |
| 2.2/2.5 | License — license file detected |
| 0.8/7.5 | Maintained — 2 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 1 |
| 5/5 | Packaging — packaging workflow detected |
| 0/5 | Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
| 0/5 | SAST — SAST tool is not run on all commits -- score normalized to 0 |
| 0/5 | Security-Policy — security policy file not detected |
| 0/7.5 | Signed-Releases — no data |
| 0/7.5 | Token-Permissions — detected GitHub workflow tokens with excessive permissions |
| 0/7.5 | Vulnerabilities — 18 existing vulnerabilities detected |
Inputs used
| source | openssf_scorecard |
| checks_evaluated | 17 |
| scorecard_version | v5.5.0 |
| checks_inconclusive | 1 |
| scorecard_aggregate | 3.7 |
Excluded from scoring (no data or not applicable): signed_releases. Remaining weights renormalized.
Dependency advisories
73Good
How it's scored
| 14/35 | Direct dependencies free of known advisories — 1 affected: lxml 5.4.0 (high 7.5) |
| 25/25 | Indirect dependencies free of known advisories — no indirect dependency carries a known advisory |
| 33.7/40 | No advisories left outstanding — 1 advisory-carrying package(s) unaddressed past 90 days; oldest published 90 days ago |
Inputs used
| source | osv |
| advisories | 2 |
| affected_packages | 1 |
| assessed_packages | 47 |
| unassessed_packages | 0 |
| affected_by_severity | high 1 |
| direct_affected_packages | 1 |
Matched the pypi:bioservices@1.16.0 runtime dependency closure — what installing the published package pulls in — 47 packages. Reachability is not analyzed.
AI Readiness
How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score.
39
Agent context & guidance
1Critical
How it's scored
| 0/45 | Agent instructions — no CLAUDE.md / AGENTS.md / editor rules |
| 0/15 | Machine-readable docs (llms.txt) |
| 0/40 | Legible commit history — no data |
Inputs used
| has_llms_txt | no |
| legible_history_share | — |
| agent_instruction_files | — |
| agent_instruction_max_bytes | — |
Excluded from scoring (no data or not applicable): Legible commit history. Remaining weights renormalized.
Verify loop (build / test / typecheck)
62Moderate
How it's scored
| 18/18 | One-command bootstrap — doc/Makefile |
| 22/22 | Automated tests |
| 11/11 | Lint / format config |
| 0/11 | Static type checking |
| 0/10 | Reproducible environment |
| 0/10 | Demonstrated agent practice — no data |
| 0/8 | Automated maintenance — no data |
| 0/10 | OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
Inputs used
| has_nix | no |
| has_tests | yes |
| lockfiles | — |
| has_dockerfile | no |
| typed_language | no |
| bootstrap_files | doc/Makefile |
| has_devcontainer | no |
| has_linter_config | yes |
| typecheck_configs | — |
| agent_commit_share | — |
| toolchain_manifests | — |
| dependency_bot_commit_share | — |
Excluded from scoring (no data or not applicable): Demonstrated agent practice, Automated maintenance. Remaining weights renormalized.
Code legibility for models
54Moderate
How it's scored
| 0/45 | Type-checkable code — Python without a type-check config |
| 53.7/55 | Manageable file sizes — 3/127 source files over 60KB |
Inputs used
| primary_language | Python |
| largest_source_bytes | 67,753 |
| source_files_sampled | 127 |
| oversized_source_files | 3 |
Machine-readable interfaces
40At risk
How it's scored
| 0/40 | API schema (OpenAPI/GraphQL/proto) |
| 0/20 | MCP server |
| 40/40 | Runnable examples — examples, notebooks |
Inputs used
| example_dirs | examples, notebooks |
| has_mcp_signal | no |
| api_schema_files | — |
Key facts
340GitHub stars
27contributors
260commits, last 12 months
38days since last push
27releases
1bus factor
3open issues
PyPIpackage ecosystems
More detail
Star and fork history 340 ★ / 0 ⇿
340Stars
When each star and fork was added, collected from GitHub and bucketed by day. Cumulative growth sits directly above the daily additions it is made of, so the two read against each other: steady organic accretion looks nothing like an abrupt, short-lived burst. Where that difference is measurable, it is reported as growth authenticity.
Each point covers 11 days.
OpenSSF Scorecard 3.7 / 10
3.7aggregate
Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).
| 10 | Binary-Artifacts | no binaries found in the repo |
| 0 | Branch-Protection | branch protection not enabled on development/release branches |
| 1 | CI-Tests | 1 out of 7 merged PRs checked by a CI test -- score normalized to 1 |
| 2 | CII-Best-Practices | badge detected: InProgress |
| 0 | Code-Review | Found 1/13 approved changesets -- score normalized to 0 |
| 10 | Contributors | project has 3 contributing companies or organizations -- score normalized to 10 |
| 10 | Dangerous-Workflow | no dangerous workflow patterns detected |
| 10 | Dependency-Update-Tool | update tool detected |
| 0 | Fuzzing | project is not fuzzed |
| 9 | License | license file detected |
| 1 | Maintained | 2 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 1 |
| 10 | Packaging | packaging workflow detected |
| 0 | Pinned-Dependencies | dependency not pinned by hash detected -- score normalized to 0 |
| 0 | SAST | SAST tool is not run on all commits -- score normalized to 0 |
| 0 | Security-Policy | security policy file not detected |
| n/a | Signed-Releases | no releases found |
| 0 | Token-Permissions | detected GitHub workflow tokens with excessive permissions |
| 0 | Vulnerabilities | 18 existing vulnerabilities detected |
Direct dependencies 16
| Registry | Package | Version constraint | Manifest |
|---|---|---|---|
| PyPI | click | (>=8.1.8,<9.0.0) | pyproject.toml |
| PyPI | appdirs | (>=1.4.4,<2.0.0) | pyproject.toml |
| PyPI | matplotlib | (>=3.9) | pyproject.toml |
| PyPI | easydev | (>=0.13.3,<0.14.0) | pyproject.toml |
| PyPI | tqdm | (>=4.67.1,<5.0.0) | pyproject.toml |
| PyPI | rich-click | (>=1.8.5,<2.0.0) | pyproject.toml |
| PyPI | colorlog | (>=6.9.0,<7.0.0) | pyproject.toml |
| PyPI | beautifulsoup4 | (>=4.12.3,<5.0.0) | pyproject.toml |
| PyPI | grequests | (>=0.7.0,<0.8.0) | pyproject.toml |
| PyPI | requests | (>=2.32.3,<3.0.0) | pyproject.toml |
| PyPI | lxml | (>=5.3.0,<7.0.0) | pyproject.toml |
| PyPI | requests-cache | (>=1.2.1,<2.0.0) | pyproject.toml |
| PyPI | wrapt | (>=1.17.2,<2.0.0) | pyproject.toml |
| PyPI | xmltodict | (>=0.14.2,<0.15.0) | pyproject.toml |
| PyPI | pandas | (>2.2) | pyproject.toml |
| PyPI | numpy | (>=1.23.2,<=2.4) | pyproject.toml |
All dependencies 126
Full resolved dependency set from the GitHub dependency graph: 16 direct and 110 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.
| Registry | Package | Version | Relation |
|---|---|---|---|
| PyPI | appdirs | 1.4.4 | direct |
| PyPI | beautifulsoup4 | 4.15.0 | direct |
| PyPI | click | 8.1.8 | direct |
| PyPI | colorlog | 6.10.1 | direct |
| PyPI | easydev | 0.13.3 | direct |
| PyPI | grequests | 0.7.0 | direct |
| PyPI | lxml | 6.1.1 | direct |
| PyPI | matplotlib | 3.9.4 | direct |
| PyPI | numpy | 2.0.2 | direct |
| PyPI | pandas | 2.3.3 | direct |
| PyPI | requests | 2.32.5 | direct |
| PyPI | requests-cache | 1.3.2 | direct |
| PyPI | rich-click | 1.9.8 | direct |
| PyPI | tqdm | 4.68.2 | direct |
| PyPI | wrapt | 1.17.3 | direct |
| PyPI | xmltodict | 0.14.2 | direct |
| PyPI | alabaster | 0.7.16 | indirect |
| PyPI | appnope | 0.1.4 | indirect |
| PyPI | asttokens | 3.0.1 | indirect |
| PyPI | attrs | 26.1.0 | indirect |
| PyPI | babel | 2.18.0 | indirect |
| PyPI | cattrs | 25.3.0 | indirect |
| PyPI | certifi | 2026.5.20 | indirect |
| PyPI | cffi | 2.0.0 | indirect |
| PyPI | charset-normalizer | 3.4.7 | indirect |
| PyPI | colorama | 0.4.6 | indirect |
| PyPI | comm | 0.2.3 | indirect |
| PyPI | contourpy | 1.3.0 | indirect |
| PyPI | coverage | 6.5.0 | indirect |
| PyPI | coveralls | 3.3.1 | indirect |
| PyPI | cycler | 0.12.1 | indirect |
| PyPI | debugpy | 1.8.21 | indirect |
| PyPI | decorator | 5.3.1 | indirect |
| PyPI | docopt | 0.6.2 | indirect |
| PyPI | docutils | 0.20.1 | indirect |
| PyPI | exceptiongroup | 1.3.1 | indirect |
| PyPI | execnet | 2.1.2 | indirect |
| PyPI | executing | 2.2.1 | indirect |
| PyPI | fastjsonschema | 2.21.2 | indirect |
| PyPI | flaky | 3.8.1 | indirect |
| PyPI | fonttools | 4.60.2 | indirect |
| PyPI | gevent | 26.5.0 | indirect |
| PyPI | greenlet | 3.2.5 | indirect |
| PyPI | idna | 3.18 | indirect |
| PyPI | imagesize | 1.5.0 | indirect |
| PyPI | importlib-metadata | 8.7.1 | indirect |
| PyPI | importlib-resources | 6.5.2 | indirect |
| PyPI | iniconfig | 2.1.0 | indirect |
| PyPI | ipykernel | 6.31.0 | indirect |
| PyPI | ipython | 8.18.1 | indirect |
| PyPI | ipython-pygments-lexers | 1.1.1 | indirect |
| PyPI | jedi | 0.19.2 | indirect |
| PyPI | jinja2 | 3.1.6 | indirect |
| PyPI | jsonschema | 4.25.1 | indirect |
| PyPI | jsonschema-specifications | 2025.9.1 | indirect |
| PyPI | jupyter-client | 8.6.3 | indirect |
| PyPI | jupyter-core | 5.8.1 | indirect |
| PyPI | kiwisolver | 1.4.7 | indirect |
| PyPI | line-profiler | 4.2.0 | indirect |
| PyPI | markdown-it-py | 3.0.0 | indirect |
| PyPI | markupsafe | 3.0.3 | indirect |
| PyPI | matplotlib-inline | 0.2.2 | indirect |
| PyPI | mdurl | 0.1.2 | indirect |
| PyPI | nbclient | 0.10.2 | indirect |
| PyPI | nbformat | 5.10.4 | indirect |
| PyPI | nbmake | 1.5.5 | indirect |
| PyPI | nest-asyncio | 1.6.0 | indirect |
| PyPI | nest-asyncio2 | 1.7.2 | indirect |
| PyPI | numpydoc | — | indirect |
| PyPI | packaging | 26.2 | indirect |
| PyPI | parso | 0.8.7 | indirect |
| PyPI | pexpect | 4.9.0 | indirect |
| PyPI | pillow | — | indirect |
| PyPI | pillow | 11.3.0 | indirect |
| PyPI | platformdirs | 4.4.0 | indirect |
| PyPI | pluggy | 1.6.0 | indirect |
| PyPI | prompt-toolkit | 3.0.52 | indirect |
| PyPI | psutil | 7.2.2 | indirect |
| PyPI | ptyprocess | 0.7.0 | indirect |
| PyPI | pure-eval | 0.2.3 | indirect |
| PyPI | pycparser | 2.23 | indirect |
| PyPI | pygments | 2.20.0 | indirect |
| PyPI | pyparsing | 3.3.2 | indirect |
| PyPI | pytest | 8.4.2 | indirect |
| PyPI | pytest-cov | 4.1.0 | indirect |
| PyPI | pytest-mock | 3.15.1 | indirect |
| PyPI | pytest-runner | 6.0.1 | indirect |
| PyPI | pytest-timeout | 2.4.0 | indirect |
| PyPI | pytest-xdist | 3.8.0 | indirect |
| PyPI | python-dateutil | 2.9.0.post0 | indirect |
| PyPI | pytz | 2026.2 | indirect |
| PyPI | pywin32 | 312 | indirect |
| PyPI | pyzmq | 27.1.0 | indirect |
| PyPI | referencing | 0.36.2 | indirect |
| PyPI | rich | 15.0.0 | indirect |
| PyPI | rpds-py | 0.27.1 | indirect |
| PyPI | setuptools | 82.0.1 | indirect |
| PyPI | six | 1.17.0 | indirect |
| PyPI | snowballstemmer | 3.1.1 | indirect |
| PyPI | soupsieve | 2.8.4 | indirect |
| PyPI | sphinx | — | indirect |
| PyPI | sphinx | 7.4.7 | indirect |
| PyPI | sphinx-copybutton | — | indirect |
| PyPI | sphinx-gallery | — | indirect |
| PyPI | sphinx-gallery | 0.15.0 | indirect |
| PyPI | sphinx-rtd-theme | — | indirect |
| PyPI | sphinx-rtd-theme | 2.0.0 | indirect |
| PyPI | sphinxcontrib-applehelp | 2.0.0 | indirect |
| PyPI | sphinxcontrib-devhelp | 2.0.0 | indirect |
| PyPI | sphinxcontrib-htmlhelp | 2.1.0 | indirect |
| PyPI | sphinxcontrib-jquery | 4.1 | indirect |
| PyPI | sphinxcontrib-jsmath | 1.0.1 | indirect |
| PyPI | sphinxcontrib-qthelp | 2.0.0 | indirect |
| PyPI | sphinxcontrib-serializinghtml | 2.0.0 | indirect |
| PyPI | stack-data | 0.6.3 | indirect |
| PyPI | tomli | 2.4.1 | indirect |
| PyPI | tornado | 6.5.7 | indirect |
| PyPI | traitlets | 5.15.1 | indirect |
| PyPI | typing-extensions | 4.15.0 | indirect |
| PyPI | tzdata | 2026.2 | indirect |
| PyPI | url-normalize | 2.2.1 | indirect |
| PyPI | urllib3 | 2.6.3 | indirect |
| PyPI | wcwidth | 0.8.1 | indirect |
| PyPI | zipp | 3.23.1 | indirect |
| PyPI | zope-event | 6.0 | indirect |
| PyPI | zope-interface | 8.0.1 | indirect |
Dependency advisories 1
Installing pypi:bioservices@1.16.0 pulls in 47 packages, direct and transitive: 1 carry known advisories, of which 1 are direct dependencies.
| Package | Version | Relation | Severity | Advisories | Fixed in |
|---|---|---|---|---|---|
| lxml | 5.4.0 | direct | high | 2 | 6.1.0 |
An advisory means the version recorded in the dependency graph falls inside an advisory’s affected range. Reachability is not analysed, and the graph includes development and test pins — a finding may concern tooling rather than shipped software.
Raw JSON report machine-readable
{
"data": {
"repo": {
"topics": [
"kegg",
"unichem",
"eutils",
"chembl",
"chebi",
"biomodels",
"quickgo",
"uniprot",
"wikipathways",
"muscle",
"python"
],
"is_fork": false,
"size_kb": 7170,
"has_wiki": true,
"homepage": "http://bioservices.readthedocs.io",
"languages": {
"Python": 1195214
},
"pushed_at": "2026-06-12T13:27:02Z",
"created_at": "2014-08-28T15:24:45Z",
"owner_type": "User",
"updated_at": "2026-07-13T12:28:18Z",
"description": "Access to Biological Web Services from Python. ",
"is_archived": false,
"is_disabled": false,
"license_spdx": null,
"default_branch": "main",
"license_spdx_raw": "NOASSERTION",
"primary_language": "Python",
"significant_languages": [
"Python"
]
},
"owner": {
"blog": "http://thomas-cokelaer.info/",
"name": "Thomas Cokelaer",
"type": "User",
"login": "cokelaer",
"company": "Institut Pasteur",
"location": "Paris, France",
"followers": 170,
"avatar_url": "https://avatars.githubusercontent.com/u/778821?v=4",
"created_at": "2011-05-10T10:25:55Z",
"is_verified": null,
"public_repos": 74,
"account_age_days": 5550
},
"license": {
"state": "custom",
"spdx_id": null,
"raw_spdx": "NOASSERTION",
"file_present": true,
"scorecard_found": true,
"profile_has_license": true
},
"activity": {
"releases_count": 27,
"commits_last_year": 260,
"latest_release_at": "2026-03-27T12:38:29Z",
"latest_release_tag": "v1.16.0",
"releases_from_tags": false,
"days_since_last_push": 38,
"active_weeks_last_year": 13,
"days_since_latest_release": 115,
"mean_days_between_releases": 141
},
"community": {
"has_readme": true,
"has_license": true,
"has_description": true,
"has_contributing": false,
"health_percentage": 42,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"ecosystem": {
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"avatar_url": "https://avatars.githubusercontent.com/u/9114904?v=4"
},
{
"type": "User",
"login": "kirienko",
"commits": 3,
"avatar_url": "https://avatars.githubusercontent.com/u/1487169?v=4"
},
{
"type": "User",
"login": "saapooch",
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"avatar_url": "https://avatars.githubusercontent.com/u/20509510?v=4"
}
],
"contributors_sampled": 27,
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},
"quality_signals": {
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"has_tests": true,
"ci_workflows": [
"all_1.yml",
"all_2.yml",
"all_3.yml",
"all_4.yml",
"arrayexpress.yml",
"bigg.yml",
"biocontainers.yml",
"biodbnet.yml",
"biomart.yml",
"biomodels.yml",
"chebi.yml",
"chembl.yml",
"ci.yml",
"cog.yml",
"dbfetch.yml",
"ena.yml",
"ensembl.yml",
"eutils.yml",
"eva.yml",
"geo.yml",
"hgnc.yml",
"intact_complex.yml",
"kegg.yml",
"muscle.yml",
"mygeneinfo.yml",
"ncbiblast.yml",
"notebooks.yml",
"omicsdi.yml",
"omnipath.yml",
"panther.yml",
"pathwaycommons.yml",
"pdb.yml",
"pdbe.yml",
"pfam.yml",
"pride.yml",
"proteins.yml",
"pubchem.yml",
"pypi.yml",
"quickgo.yml",
"reactome.yml",
"rhea.yml",
"seqret.yml",
"string.yml",
"unichem.yml",
"uniprot.yml",
"wikipathway.yml"
],
"has_docs_dir": true,
"linter_configs": [],
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"has_linter_config": true,
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"security_signals": {
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"checks": [
{
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"score": 10,
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"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
},
{
"name": "Branch-Protection",
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"reason": "branch protection not enabled on development/release branches",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
},
{
"name": "CI-Tests",
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"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
},
{
"name": "CII-Best-Practices",
"score": 2,
"reason": "badge detected: InProgress",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
},
{
"name": "Code-Review",
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"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
},
{
"name": "Contributors",
"score": 10,
"reason": "project has 3 contributing companies or organizations -- score normalized to 10",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
},
{
"name": "Dangerous-Workflow",
"score": 10,
"reason": "no dangerous workflow patterns detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
},
{
"name": "Dependency-Update-Tool",
"score": 10,
"reason": "update tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
},
{
"name": "Fuzzing",
"score": 0,
"reason": "project is not fuzzed",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
},
{
"name": "License",
"score": 9,
"reason": "license file detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
},
{
"name": "Maintained",
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"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
},
{
"name": "Packaging",
"score": 10,
"reason": "packaging workflow detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
},
{
"name": "Pinned-Dependencies",
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"reason": "dependency not pinned by hash detected -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
},
{
"name": "SAST",
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"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
},
{
"name": "Security-Policy",
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"reason": "security policy file not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
},
{
"name": "Signed-Releases",
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"reason": "no releases found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
},
{
"name": "Token-Permissions",
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"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
},
{
"name": "Vulnerabilities",
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"reason": "18 existing vulnerabilities detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
}
],
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"has_codeql_workflow": false,
"has_security_policy": false,
"has_dependabot_config": false
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},
"config": {
"disabled_metrics": [],
"disabled_categories": [],
"disabled_components": {}
},
"source": {
"url": "https://github.com/cokelaer/bioservices",
"host": "github.com",
"name": "bioservices",
"owner": "cokelaer"
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"metrics": {
"overall": {
"key": "overall",
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"note": null,
"notes": [],
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"inputs": {
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"vitality": 57,
"community": 60,
"governance": 67,
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"components": []
},
"categories": [
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"value": 57,
"weight": 0.22,
"metrics": [
{
"key": "development_activity",
"band": "at_risk",
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"note": null,
"notes": [],
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"inputs": {
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"human_commit_share": null,
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"active_weeks_last_year": 13
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"components": [
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"key": "openssf_scorecard_maintained",
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]
},
{
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"notes": [
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},
{
"code": "weights_renormalized",
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"inputs": {
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"latest_release_tag": "v1.16.0",
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"components": [
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{
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],
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{
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"detail": "a release every ~141 days",
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],
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{
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]
},
{
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"note": null,
"notes": [],
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"inputs": {
"cap": null,
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"guards": [],
"signals": [],
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"components": [
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"code": "abandonment_unverified",
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],
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]
}
],
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{
"key": "community",
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"value": 60,
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"metrics": [
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"key": "popularity",
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"note": null,
"notes": [],
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"inputs": {
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"stars": 340,
"watchers": 16,
"growth_state": "organic",
"growth_factor_pct": 100
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"components": [
{
"key": "stars",
"name": "Stars",
"detail": "340 stars",
"points": 41,
"status": "partial",
"details": [
{
"code": "stars",
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}
],
"max_points": 60
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{
"key": "forks",
"name": "Forks",
"detail": "69 forks",
"points": 15.3,
"status": "partial",
"details": [
{
"code": "forks",
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}
],
"max_points": 25
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{
"key": "watchers",
"name": "Watchers",
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"points": 6.5,
"status": "partial",
"details": [
{
"code": "watchers",
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}
],
"max_points": 15
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]
},
{
"key": "community_health",
"band": "at_risk",
"name": "Community health",
"note": null,
"notes": [],
"value": 44,
"inputs": {
"has_readme": true,
"has_license": true,
"has_contributing": false,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
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"status": "met",
"details": [],
"max_points": 22.5
},
{
"key": "license",
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"status": "partial",
"details": [
{
"code": "license_custom",
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],
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{
"key": "contributing_guide",
"name": "CONTRIBUTING guide",
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"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "code_of_conduct",
"name": "Code of conduct",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
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},
{
"key": "issue_template",
"name": "Issue template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
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{
"key": "pr_template",
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"points": 0,
"status": "missed",
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},
{
"key": "ecosystem_adoption",
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"code": "excluded_no_data",
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},
{
"code": "weights_renormalized",
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],
"value": 76,
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"dependents": null,
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"components": [
{
"key": "monthly_downloads",
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"status": "partial",
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"ecosystems": "pypi"
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}
],
"max_points": 80
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{
"key": "registry_dependents",
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"points": 0,
"status": "excluded",
"details": [
{
"code": "not_reported_by_this_ecosystem",
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],
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]
}
],
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},
{
"key": "governance",
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"key": "maintainer_resilience",
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"components": [
{
"key": "bus_factor",
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"details": [
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"code": "bus_factor",
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}
],
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{
"key": "commit_distribution",
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"status": "partial",
"details": [
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"code": "top_contributor_share",
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}
],
"max_points": 22.5
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{
"key": "contributor_breadth",
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"details": [
{
"code": "contributors_sampled",
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}
],
"max_points": 13.5
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{
"key": "openssf_scorecard_contributors",
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]
},
{
"key": "responsiveness",
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"notes": [],
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"components": [
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"code": "issues_closed_share",
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}
],
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{
"key": "pr_acceptance",
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"status": "partial",
"details": [
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"code": "decided_prs_merged",
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],
"max_points": 38.25
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{
"key": "openssf_scorecard_code_review",
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]
},
{
"key": "stewardship",
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"notes": [
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"code": "excluded_no_data",
"params": {
"components": [
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},
{
"code": "weights_renormalized",
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],
"value": 64,
"inputs": {
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"owner_type": "User",
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"account_age_days": 5550
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"components": [
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"code": "owner_personal",
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],
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{
"key": "verified_domain",
"name": "Verified domain",
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"status": "excluded",
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"code": "not_applicable_to_user_accounts",
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],
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{
"key": "owner_reach",
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{
"key": "track_record",
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"points": 25,
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"code": "public_repos",
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},
{
"code": "account_age_years",
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}
],
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]
},
{
"key": "package_maintenance",
"band": "excellent",
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"notes": [],
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"inputs": {
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"components": [
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"key": "published_resolvable",
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"code": "packages_published",
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}
],
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{
"key": "publish_recency",
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"detail": "latest publish 115 days ago",
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"status": "met",
"details": [
{
"code": "publish_recency",
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}
],
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{
"key": "version_history",
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"points": 20,
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{
"code": "published_versions",
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}
],
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{
"key": "not_deprecated",
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]
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],
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"metrics": [
{
"key": "engineering_practices",
"band": "good",
"name": "Engineering practices",
"note": null,
"notes": [],
"value": 76,
"inputs": {
"has_ci": true,
"has_tests": true,
"has_editorconfig": false,
"has_linter_config": true,
"has_precommit_config": true
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": "46 workflow(s)",
"points": 24,
"status": "met",
"details": [
{
"code": "ci_workflows",
"params": {
"count": 46
}
}
],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 24,
"status": "met",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": null,
"points": 16,
"status": "met",
"details": [],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 9.6,
"status": "met",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "1 out of 7 merged PRs checked by a CI test -- score normalized to 1",
"points": 2,
"status": "partial",
"details": [],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "excellent",
"name": "Documentation",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"topics": [
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"unichem",
"eutils",
"chembl",
"chebi",
"biomodels",
"quickgo",
"uniprot",
"wikipathways",
"muscle",
"python"
],
"has_wiki": true,
"homepage": "http://bioservices.readthedocs.io",
"has_readme": true,
"has_docs_dir": true,
"has_description": true
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 30,
"status": "met",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 25,
"status": "met",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": "http://bioservices.readthedocs.io",
"points": 15,
"status": "met",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": "11 topics",
"points": 10,
"status": "met",
"details": [
{
"code": "topics_count",
"params": {
"count": 11
}
}
],
"max_points": 10
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{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "at_risk",
"name": "Security",
"value": 44,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "at_risk",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
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}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 37,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 17,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 1,
"scorecard_aggregate": 3.7
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "branch protection not enabled on development/release branches",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "1 out of 7 merged PRs checked by a CI test -- score normalized to 1",
"points": 0.2,
"status": "partial",
"details": [],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "badge detected: InProgress",
"points": 0.5,
"status": "partial",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 1/13 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 3 contributing companies or organizations -- score normalized to 10",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no dangerous workflow patterns detected",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "update tool detected",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.2,
"status": "partial",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "2 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 1",
"points": 0.8,
"status": "partial",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow detected",
"points": 5,
"status": "met",
"details": [],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "SAST tool is not run on all commits -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "detected GitHub workflow tokens with excessive permissions",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "18 existing vulnerabilities detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "dependency_advisories",
"band": "good",
"name": "Dependency advisories",
"note": "Matched the pypi:bioservices@1.16.0 runtime dependency closure — what installing the published package pulls in — 47 packages. Reachability is not analyzed.",
"notes": [
{
"code": "advisories_scope_published",
"params": {
"package": "pypi:bioservices@1.16.0",
"assessed": 47
}
},
{
"code": "advisories_reachability",
"params": {}
}
],
"value": 73,
"inputs": {
"source": "osv",
"advisories": 2,
"affected_packages": 1,
"assessed_packages": 47,
"unassessed_packages": 0,
"affected_by_severity": "high 1",
"direct_affected_packages": 1
},
"components": [
{
"key": "direct_dependencies_free_of_known_advisories",
"name": "Direct dependencies free of known advisories",
"detail": "1 affected: lxml 5.4.0 (high 7.5)",
"points": 14,
"status": "partial",
"details": [
{
"code": "advisories_affected",
"params": {
"count": 1,
"packages": "lxml 5.4.0 (high 7.5)"
}
}
],
"max_points": 35
},
{
"key": "indirect_dependencies_free_of_known_advisories",
"name": "Indirect dependencies free of known advisories",
"detail": "no indirect dependency carries a known advisory",
"points": 25,
"status": "met",
"details": [
{
"code": "no_indirect_advisories",
"params": {}
}
],
"max_points": 25
},
{
"key": "no_advisories_left_outstanding",
"name": "No advisories left outstanding",
"detail": "1 advisory-carrying package(s) unaddressed past 90 days; oldest published 90 days ago",
"points": 33.7,
"status": "partial",
"details": [
{
"code": "advisories_stale",
"params": {
"days": 90,
"count": 1,
"oldest": 90
}
}
],
"max_points": 40
}
]
},
{
"key": "malicious_dependencies",
"band": "excellent",
"name": "Malicious dependencies",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"source": "osv",
"meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
"packages": [],
"red_flag": false,
"assessed_packages": 47,
"malicious_packages": 0,
"direct_malicious_packages": 0,
"withdrawn_malicious_packages": 0,
"installable_malicious_packages": 0
},
"components": [
{
"key": "no_dependency_reported_as_a_malicious_package",
"name": "No dependency reported as a malicious package",
"detail": "no dependency is reported as a malicious package",
"points": 100,
"status": "met",
"details": [
{
"code": "no_malicious_dependencies",
"params": {}
}
],
"max_points": 100
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "excellent",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"review_only_matches": 0,
"assessed_self_published_locations": 12
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "at_risk",
"name": "AI Readiness",
"value": 39,
"weight": 0,
"metrics": [
{
"key": "ai_agent_context",
"band": "critical",
"name": "Agent context & guidance",
"note": "Excluded from scoring (no data or not applicable): Legible commit history. Remaining weights renormalized.",
"notes": [
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"code": "excluded_no_data",
"params": {
"components": [
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]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 1,
"inputs": {
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"legible_history_share": null,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "legible_commit_history",
"name": "Legible commit history",
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"points": 0,
"status": "excluded",
"details": [
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"code": "no_data",
"params": {}
}
],
"max_points": 40
}
]
},
{
"key": "ai_verify_loop",
"band": "moderate",
"name": "Verify loop (build / test / typecheck)",
"note": "Excluded from scoring (no data or not applicable): Demonstrated agent practice, Automated maintenance. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
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}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 62,
"inputs": {
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"has_tests": true,
"lockfiles": [],
"has_dockerfile": false,
"typed_language": false,
"bootstrap_files": [
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"has_devcontainer": false,
"has_linter_config": true,
"typecheck_configs": [],
"agent_commit_share": null,
"toolchain_manifests": [],
"dependency_bot_commit_share": null
},
"components": [
{
"key": "one_command_bootstrap",
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"detail": "doc/Makefile",
"points": 18,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "doc/Makefile"
}
}
],
"max_points": 18
},
{
"key": "automated_tests",
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"detail": null,
"points": 22,
"status": "met",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": null,
"points": 11,
"status": "met",
"details": [],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "no data",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "no data",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "moderate",
"name": "Code legibility for models",
"note": null,
"notes": [],
"value": 54,
"inputs": {
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"largest_source_bytes": 67753,
"source_files_sampled": 127,
"oversized_source_files": 3
},
"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "Python without a type-check config",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_typecheck_config_language",
"params": {
"language": "Python"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "3/127 source files over 60KB",
"points": 53.7,
"status": "partial",
"details": [
{
"code": "oversized_source_files",
"params": {
"kb": 60,
"sampled": 127,
"oversized": 3
}
}
],
"max_points": 55
}
]
},
{
"key": "ai_interfaces",
"band": "at_risk",
"name": "Machine-readable interfaces",
"note": null,
"notes": [],
"value": 40,
"inputs": {
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"examples",
"notebooks"
],
"has_mcp_signal": false,
"api_schema_files": []
},
"components": [
{
"key": "api_schema_openapi_graphql_proto",
"name": "API schema (OpenAPI/GraphQL/proto)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 40
},
{
"key": "mcp_server",
"name": "MCP server",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "runnable_examples",
"name": "Runnable examples",
"detail": "examples, notebooks",
"points": 40,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "examples, notebooks"
}
}
],
"max_points": 40
}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.13.0"
},
"warnings": [],
"report_type": "repository",
"generated_at": "2026-07-21T04:20:06.840764Z",
"schema_version": "0.17.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/c/cokelaer/bioservices.svg",
"full_name": "cokelaer/bioservices",
"license_state": "custom",
"license_spdx": null
}Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.
Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v1.13.0, schema v0.17.0 — full methodology · metrics wiki.
How one result sits in the wider record: aggregate statistics — PyPI.