All tags
Catalogue tag

#pdb

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

40 records
Tagged “pdb”Ranked by health index
NuGet
78Goodhealth index
icsharpcode/ILSpy
.NET Decompiler with support for PDB generation, ReadyToRun, Metadata (&more) - cross-platform!
C#★ 25.7KJul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
72Goodhealth index
bradyajohnston/molecularnodes
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
Python★ 1,317Jul 15, 2026
GPL-3.0Jul 15, 2026 · metrics 1.13.0
PyPI · npm
70Goodhealth index
project-gemmi/gemmi
macromolecular crystallography library and utilities
C++★ 364↓ 536.2K/moJul 17, 2026
MPL-2.0Jul 17, 2026 · metrics 1.13.0
PyPI
69Moderatehealth index
haddocking/protein-quest
Python package to search/retrieve/filter proteins and protein structures
Python★ 5Jul 15, 2026
Apache-2.0Jul 15, 2026 · metrics 1.13.0
PyPI
67Moderatehealth index
elkins/synth-pdb
Generate realistic PDB files with mixed secondary structures for testing, education and bioinformatics tool development. Jupyter Notebook tutorials are available to visualize the concepts..
Python★ 1↓ 3,758/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
64Moderatehealth index
cokelaer/bioservices
Access to Biological Web Services from Python.
Python★ 340↓ 36.1K/moJul 21, 2026
Custom licenseJul 21, 2026 · metrics 1.13.0
PyPI
63Moderatehealth index
t-0hmura/mlmm_toolkit
Machine‑Learning / Molecular‑Mechanics (ML/MM) hybrid calculator and CLI toolset for Mechanistic Investigation of Enzymatic Reactions.
Python★ 17↓ 387/moJul 17, 2026
GPL-3.0Jul 17, 2026 · metrics 1.13.0
npm
62Moderatehealth index
bugsplat-git/symbol-upload
💻🔀☁️ Cross-platform symbol upload utility and symbol server layout creator for BugSplat
TypeScript · JavaScript★ 13↓ 2,955/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
62Moderatehealth index
t-0hmura/pdb2reaction
End-to-end Reaction-Path Modeling from PDB Structures Using Machine-Learning Interatomic Potentials
Python★ 15↓ 2,374/moJul 14, 2026
GPL-3.0Jul 14, 2026 · metrics 1.13.0
PyPI
61Moderatehealth index
PDBeurope/ccdutils
A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dictionary, uses RDKit
Python★ 82Jul 15, 2026
Apache-2.0Jul 15, 2026 · metrics 1.13.0
—
57Moderatehealth index
BIoJulia/BIoStructures.jl
A Julia package to read, write and manipulate macromolecular structures
Julia★ 105Jul 17, 2026
Custom licenseJul 17, 2026 · metrics 1.13.0
PyPI · crates.io
57Moderatehealth index
hfooladi/pdbrust
A Rust library for parsing PDB (Protein Data Bank) files
Rust★ 20↓ 997/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
56Moderatehealth index
PDBeurope/rellig
Identifies relevant ligands in the PDB
Python★ 9Jul 15, 2026
Apache-2.0Jul 15, 2026 · metrics 1.13.0
PyPI
55Moderatehealth index
BioPandas/biopandas
Working with molecular structures in pandas DataFrames
Python★ 756Jul 21, 2026
BSD-3-ClauseJul 21, 2026 · metrics 1.13.0
npm
53Moderatehealth index
PDBeurope/mmcif-validator
Real-time VSCode extension and standalone Python script for validating mmCIF/CIF files against the PDBx/mmCIF dictionary or any CIF dictionary.
Python · TypeScript★ 10Jul 15, 2026
No licenseJul 15, 2026 · metrics 1.13.0
npm
52Moderatehealth index
Piebald-AI/node-lief
Node.js bindings for LIEF, a library to parse and manipulate ELF, PE, and Mach-O executables.
JavaScript · C++★ 8↓ 10.2K/moJul 17, 2026
Apache-2.0Jul 17, 2026 · metrics 1.13.0
PyPI · npm
50Moderatehealth index
N283T/pdb-mine-builder
Build a Mine-schema database from PDB data. Load PDBj structural biology data into PostgreSQL with RDKit chemical search support.
Python★ 0↓ 1,096/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
50Moderatehealth index
pdbeurope/investigations
This application is designed to create mmcif files from facilities data.
Python★ 6↓ 1,071/moJul 15, 2026
No licenseJul 15, 2026 · metrics 1.13.0
PyPI
49At riskhealth index
PDBEurope/mmcif-gen
This application is designed to create mmcif files from facilities data.
Python★ 6Jul 17, 2026
No licenseJul 17, 2026 · metrics 1.13.0
PyPI
48At riskhealth index
AkhilTeja2209/Proteinspy
Python library and a CLI tool to analyze protein sample files
Python★ 0↓ 975/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
npm
48At riskhealth index
juliocesar-io/nano-protein-viewer-react
React component for visualizing protein structures with the Mol* framework.
TypeScript★ 8↓ 710/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
48At riskhealth index
n283t/view-cif
CLI tool to view CIF files from various sources in your editor
Python★ 0Jul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
47At riskhealth index
gotcha/ipdb
Integration of IPython pdb
Python★ 1,975Jul 18, 2026
BSD-3-ClauseJul 18, 2026 · metrics 1.13.0
PyPI
46At riskhealth index
crabisoft/pdbstore
Publish PDB and PE files to symbols store
Python★ 2Jul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
45At riskhealth index
gqy20/protein-mcp
FastMCP-based protein data access tools for bioinformatics research
Python★ 0↓ 682/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
44At riskhealth index
diggerdu/apdb
apdb: python debugger for agents
Python★ 0↓ 1,522/moJul 15, 2026
BSD-2-ClauseJul 15, 2026 · metrics 1.13.0
PyPI
43At riskhealth index
PDBeurope/pdbecif
A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"
Python★ 38↓ 8,169/moJul 17, 2026
Apache-2.0Jul 17, 2026 · metrics 1.13.0
PyPI
43At riskhealth index
a-r-j/cpdb
Cython implementation of PDB -> DataFrame parsing
Cython · Jupyter Notebook · Python★ 34↓ 20.1K/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
—
43At riskhealth index
uclorengogroup/cath-tools
Protein structure comparison tools such as SSAP and SNAP
C++ · Promela★ 67Jul 15, 2026
GPL-3.0Jul 15, 2026 · metrics 1.13.0