NuGet
icsharpcode/ILSpy
.NET Decompiler with support for PDB generation, ReadyToRun, Metadata (&more) - cross-platform!
MITAug 5, 2026 · metrics 2.10.0
All tags
Catalogue tag
#pdb
Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.
47 records
PyPI
bradyajohnston/molecularnodes
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
GPL-3.0Jul 15, 2026 · metrics 2.10.0
PyPI · npm
project-gemmi/gemmi
macromolecular crystallography library and utilities
MPL-2.0Jul 17, 2026 · metrics 2.10.0
PyPI
inducer/pudb
Full-screen console debugger for Python
Custom licenseAug 13, 2026 · metrics 2.10.0
PyPI
haddocking/protein-quest
Python package to search/retrieve/filter proteins and protein structures
Apache-2.0Jul 15, 2026 · metrics 2.10.0
PyPI
elkins/synth-pdb
Generate realistic PDB files with mixed secondary structures for testing, education and bioinformatics tool development. Jupyter Notebook tutorials are available to visualize the concepts..
MITJul 15, 2026 · metrics 2.10.0
PyPI
cokelaer/bioservices
Access to Biological Web Services from Python.
Custom licenseJul 21, 2026 · metrics 2.10.0
PyPI
abhishektiwari/hbat
HBAT 2: A Python Package to analyse Hydrogen Bonds and Other Non-covalent Interactions in Macromolecular Structures https://hbat-web.abhishek-tiwari.com
MITAug 2, 2026 · metrics 2.10.0
npm
bugsplat-git/symbol-upload
💻🔀☁️ Cross-platform symbol upload utility and symbol server layout creator for BugSplat
MITJul 15, 2026 · metrics 2.10.0
PyPI
t-0hmura/mlmm_toolkit
Machine‑Learning / Molecular‑Mechanics (ML/MM) hybrid calculator and CLI toolset for Mechanistic Investigation of Enzymatic Reactions.
GPL-3.0Jul 17, 2026 · metrics 2.10.0
PyPI
PDBeurope/ccdutils
A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dictionary, uses RDKit
Apache-2.0Jul 15, 2026 · metrics 2.10.0
PyPI
cansarigol/pdbr
pdb + Rich library
MITAug 17, 2026 · metrics 2.10.0
Go · npm
imneeteeshyadav98/kubepreflight
Kubernetes upgrade-readiness CLI and Console for detecting deprecated APIs, webhook blockers, PDB risks, unhealthy workloads, node skew, and upgrade action plans.
Apache-2.0Jul 26, 2026 · metrics 2.10.0
PyPI
t-0hmura/pdb2reaction
End-to-end Reaction-Path Modeling from PDB Structures Using Machine-Learning Interatomic Potentials
GPL-3.0Sep 5, 2026 · metrics 2.10.0
—
BIoJulia/BIoStructures.jl
A Julia package to read, write and manipulate macromolecular structures
Custom licenseJul 17, 2026 · metrics 2.10.0
PyPI · crates.io
hfooladi/pdbrust
A Rust library for parsing PDB (Protein Data Bank) files
MITJul 15, 2026 · metrics 2.10.0
crates.io
mstange/pdb-addr2line
A Rust crate to symbolicate addresses from PDBs, like addr2line. Uses the `pdb` crate.
Apache-2.0Jul 24, 2026 · metrics 2.10.0
PyPI
PDBeurope/rellig
Identifies relevant ligands in the PDB
Apache-2.0Jul 15, 2026 · metrics 2.10.0
PyPI
BioPandas/biopandas
Working with molecular structures in pandas DataFrames
BSD-3-ClauseJul 21, 2026 · metrics 2.10.0
PyPI
bretello/pdbpp
pdb++, a drop-in replacement for pdb (the Python debugger)
BSD-3-ClauseAug 8, 2026 · metrics 2.10.0
npm
PDBeurope/mmcif-validator
Real-time VSCode extension and standalone Python script for validating mmCIF/CIF files against the PDBx/mmCIF dictionary or any CIF dictionary.
No licenseJul 15, 2026 · metrics 2.10.0
npm
Piebald-AI/node-lief
Node.js bindings for LIEF, a library to parse and manipulate ELF, PE, and Mach-O executables.
Apache-2.0Jul 17, 2026 · metrics 2.10.0
PyPI · npm
N283T/pdb-mine-builder
Build a Mine-schema database from PDB data. Load PDBj structural biology data into PostgreSQL with RDKit chemical search support.
MITJul 15, 2026 · metrics 2.10.0
PyPI
pdbeurope/investigations
This application is designed to create mmcif files from facilities data.
No licenseJul 15, 2026 · metrics 2.10.0
PyPI
PDBEurope/mmcif-gen
This application is designed to create mmcif files from facilities data.
No licenseJul 17, 2026 · metrics 2.10.0
PyPI
AkhilTeja2209/Proteinspy
Python library and a CLI tool to analyze protein sample files
MITJul 15, 2026 · metrics 2.10.0
npm
juliocesar-io/nano-protein-viewer-react
React component for visualizing protein structures with the Mol* framework.
MITJul 15, 2026 · metrics 2.10.0
PyPI
n283t/view-cif
CLI tool to view CIF files from various sources in your editor
MITJul 15, 2026 · metrics 2.10.0
PyPI
crabisoft/pdbstore
Publish PDB and PE files to symbols store
MITJul 15, 2026 · metrics 2.10.0
PyPI
gotcha/ipdb
Integration of IPython pdb
BSD-3-ClauseJul 18, 2026 · metrics 2.10.0