NuGet
icsharpcode/ILSpy
.NET Decompiler with support for PDB generation, ReadyToRun, Metadata (&more) - cross-platform!
MITSep 16, 2026 · metrics 2.10.0
All tags
Catalogue tag
#pdb
Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.
55 records
PyPI
BradyAJohnston/MolecularNodes
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
GPL-3.0Sep 8, 2026 · metrics 2.10.0
PyPI
inducer/pudb
Full-screen console debugger for Python
Custom licenseSep 17, 2026 · metrics 2.10.0
PyPI · npm · crates.io
megane-labs/megane
No repository description published.
MITOct 18, 2026 · metrics 2.10.0
PyPI
haddocking/protein-quest
Python package to search/retrieve/filter proteins and protein structures
Apache-2.0Sep 8, 2026 · metrics 2.10.0
PyPI
prody/ProDy
A Python Package for Protein Dynamics Analysis
Custom licenseOct 18, 2026 · metrics 2.10.0
PyPI · npm
project-gemmi/gemmi
macromolecular crystallography library and utilities
MPL-2.0Sep 9, 2026 · metrics 2.10.0
crates.io
kent-tokyo/chematic
A pure-Rust cheminformatics library targeting RDKit feature parity — zero C/C++ by default.
Apache-2.0Sep 9, 2026 · metrics 2.10.0
PyPI
haddocking/protein-detective
Python package to detect proteins in EM density maps.
Apache-2.0Sep 8, 2026 · metrics 2.10.0
PyPI
abhishektiwari/hbat
HBAT 2: A Python Package to analyse Hydrogen Bonds and Other Non-covalent Interactions in Macromolecular Structures https://hbat-web.abhishek-tiwari.com
MITSep 16, 2026 · metrics 2.10.0
npm
BugSplat-Git/symbol-upload
💻🔀☁️ Cross-platform symbol upload utility and symbol server layout creator for BugSplat
MITSep 8, 2026 · metrics 2.10.0
PyPI
diffpy/diffpy.structure
Crystal structure container and parsers for structure formats.
Custom licenseOct 18, 2026 · metrics 2.10.0
PyPI
PDBeurope/ccdutils
A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dictionary, uses RDKit
Apache-2.0Sep 8, 2026 · metrics 2.10.0
PyPI
cansarigol/pdbr
pdb + Rich library
MITOct 19, 2026 · metrics 2.10.0
PyPI
cokelaer/bioservices
Access to Biological Web Services from Python.
Custom licenseSep 12, 2026 · metrics 2.10.0
PyPI
BioPandas/biopandas
Working with molecular structures in pandas DataFrames
BSD-3-ClauseSep 12, 2026 · metrics 2.10.0
PyPI · npm
PDBeurope/mmcif-validator
Real-time VSCode extension and standalone Python script for validating mmCIF/CIF files against the PDBx/mmCIF dictionary or any CIF dictionary.
No licenseSep 8, 2026 · metrics 2.10.0
PyPI
PDBeurope/rellig
Identifies relevant ligands in the PDB
Apache-2.0Sep 8, 2026 · metrics 2.10.0
PyPI
t-0hmura/mlmm_toolkit
Machine‑Learning / Molecular‑Mechanics (ML/MM) hybrid calculator and CLI toolset for Mechanistic Investigation of Enzymatic Reactions.
GPL-3.0Sep 9, 2026 · metrics 2.10.0
PyPI
t-0hmura/pdb2reaction
End-to-end Reaction-Path Modeling from PDB Structures Using Machine-Learning Interatomic Potentials
GPL-3.0Sep 5, 2026 · metrics 2.10.0
—
BioJulia/BioStructures.jl
A Julia package to read, write and manipulate macromolecular structures
Custom licenseSep 10, 2026 · metrics 2.10.0
Go · npm
imneeteeshyadav98/kubepreflight
Kubernetes upgrade-readiness CLI and Console for detecting deprecated APIs, webhook blockers, PDB risks, unhealthy workloads, node skew, and upgrade action plans.
Apache-2.0Sep 13, 2026 · metrics 2.10.0
NuGet
dotnet/symreader-portable
Reader of Portable PDBs format that implements DiaSymReader interfaces (ISymUnmanagedReader, ISymUnmanagedBinder, etc.).
MITSep 11, 2026 · metrics 2.10.0
PyPI
AkhilTeja2209/Proteinspy
Python library and a CLI tool to analyze protein sample files
MITSep 8, 2026 · metrics 2.10.0
crates.io · PyPI
HFooladi/pdbrust
A Rust library for parsing PDB (Protein Data Bank) files
MITSep 8, 2026 · metrics 2.10.0
crates.io
mstange/pdb-addr2line
A Rust crate to symbolicate addresses from PDBs, like addr2line. Uses the `pdb` crate.
Apache-2.0Sep 13, 2026 · metrics 2.10.0
npm
vv137/molterm
A terminal-based molecular structure viewer
MITOct 18, 2026 · metrics 2.10.0
npm
Piebald-AI/node-lief
Node.js bindings for LIEF, a library to parse and manipulate ELF, PE, and Mach-O executables.
Apache-2.0Sep 9, 2026 · metrics 2.10.0
crates.io · npm
TKanX/bio-forge
A high-performance, pure Rust toolkit for standardizing and preparing biomolecular systems (proteins & nucleic acids). It heals missing atoms, resolves protonation states, adds solvation, and unifies topologies to forge simulation-ready structures.
MITSep 8, 2026 · metrics 2.10.0
PyPI
bretello/pdbpp
pdb++, a drop-in replacement for pdb (the Python debugger)
BSD-3-ClauseSep 17, 2026 · metrics 2.10.0