Public record
Software health reportschema 0.23.0 · metrics 1.13.0 · 2026-07-21 20:25 UTC

genomoncology / biomcp

BioMCP: Biomedical Model Context Protocol

Rust · PythonMIT★ 554 stars⑂ 109 forkssince Apr 2025View on GitHub ↗
#ai#bioinformatics#clinical-trials#genomics#llm#mcp#mcp-server#medical#model-context-protocol#pubmed#pubmed-central

genomoncology/biomcp holds a health index of 71 out of 100, placing it in the Good band. It scores highest on Vitality (89/100) and lowest on Security (51/100). It was last updated today. A single contributor accounts for most of its recent work.

71
overall / 100
Good

Software health index

Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At risk ceiling of 49. AI Readiness sits outside the overall score.

71
Excellent85-100Exemplary; meets essentially all checked criteria
Good70-84Healthy; minor gaps
Moderate50-69Acceptable with notable gaps; review recommended
At risk30-49Significant weaknesses; adoption warrants caution
Critical1-29Severe problems (abandoned, single-maintainer, no hygiene)
VitalityCommunity &AdoptionSustainability &GovernanceEngineeringQualitySecurityAI Readiness

Score profile

Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.

Ownership

GenomOncology, LLCOrganization
37 followers29 public repossince Mar 2013

This repository is backed by an organization — shared, accountable stewardship that can outlive any single maintainer.

Package ecosystems

RegistryPackageVersionDownloads / moVersionsLast publishTags
PyPIbiomcp-cli0.8.25-1212 days agobioinformaticsmcpgenomicsclinical-trialspubmed

Metrics by category

Vitality

Is the project alive — is code being written and are releases shipping?

89Excellent · 22% of overall

Development activity

89Excellent
How it's scored
36/36Push recency — last push 0 days ago
24.9/36Commit cadence — 36/52 weeks with commits
18/18Commit volume — 2,075 commits in the last year
10/10OpenSSF Scorecard: Maintained — 30 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 10
Inputs used
commits_last_year2,075
human_commit_share1
days_since_last_push0
active_weeks_last_year36

Release discipline

90Excellent
How it's scored
27/27Ships releases — 62 releases published
36/36Release recency — latest release 13 days ago
27/27Release cadence — a release every ~12.5 days
0/10OpenSSF Scorecard: Signed-Releases — Project has not signed or included provenance with any releases.
Inputs used
releases_count62
latest_release_tagv0.8.25
releases_from_tagsno
days_since_latest_release13
mean_days_between_releases12.5

Community & Adoption

Does the project have users, downloads, attention, and a welcoming setup for contributors?

74Good · 18% of overall

Popularity & adoption

65Moderate
How it's scored
44.5/60Stars — 554 stars
16.9/25Forks — 109 forks
3.9/15Watchers — 6 watchers
Inputs used
forks109
stars554
watchers6
growth_stateorganic
growth_factor_pct100

Community health

85Excellent
How it's scored
22.5/22.5README
22.5/22.5License — recognized license (MIT)
18/18CONTRIBUTING guide
13.5/13.5Code of conduct
0/7.2Issue template
0/6.3PR template
Inputs used
has_readmeyes
has_licenseyes
has_contributingyes
has_issue_templateno
has_code_of_conductyes
has_pull_request_templateno

Sustainability & Governance

Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?

63Moderate · 24% of overall

Maintainer resilience (bus factor)

22Critical
How it's scored
9/54Bus factor — 1 contributor(s) cover half of all commits
0.8/22.5Commit distribution — top contributor authored 97% of commits
9.5/13.5Contributor breadth — 7 contributors
3/10OpenSSF Scorecard: Contributors — project has 1 contributing companies or organizations -- score normalized to 3
Inputs used
bus_factor1
contributors_sampled7
top_contributor_share0.966

Issue & PR responsiveness

82Good
How it's scored
46.8/46.8Issue resolution — 100% of issues closed
34.9/38.3PR acceptance — 177/194 decided PRs merged
0/15OpenSSF Scorecard: Code-Review — Found 0/30 approved changesets -- score normalized to 0
Inputs used
merged_prs177
open_issues0
closed_issues42
issue_closed_ratio1
closed_unmerged_prs17

Ownership & stewardship

64Moderate
How it's scored
30/30Ownership backing — organization-owned
0/20Verified domain
11.4/25Owner reach — 37 followers of genomoncology
22.8/25Track record — 29 public repos, account ~13 yr old
Inputs used
followers37
owner_typeOrganization
is_verified—
owner_logingenomoncology
public_repos29
account_age_days4,884

Package maintenance

100Excellent
How it's scored
25/25Published & resolvable — 1 package(s) on pypi
35/35Publish recency — latest publish 12 days ago
20/20Version history — 12 published versions
20/20Not deprecated — active, not deprecated or yanked
Inputs used
packagesbiomcp-cli
ecosystemspypi
any_deprecatedno
min_days_since_publish12

Engineering Quality

Are baseline engineering and documentation practices in place?

72Good · 20% of overall

Engineering practices

60Moderate
How it's scored
24/24CI workflows — 3 workflow(s)
24/24Tests present
0/16Linter config
0/9.6Pre-commit hooks
0/6.4.editorconfig
0/20OpenSSF Scorecard: CI-Tests — no data
Inputs used
has_ciyes
has_testsyes
has_editorconfigno
has_linter_configno
has_precommit_configno
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: CI-Tests. Remaining weights renormalized.

Documentation

90Excellent
How it's scored
30/30README
25/25Documentation directory
15/15Documentation / homepage site — https://biomcp.org/
10/10Repository description
10/10Topics — 11 topics
0/10Wiki
Inputs used
topicsai, bioinformatics, clinical-trials, genomics, llm, mcp, mcp-server, medical, model-context-protocol, pubmed, pubmed-central
has_wikino
homepagehttps://biomcp.org/
has_readmeyes
has_docs_diryes
has_descriptionyes

Security

Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?

51Moderate · 16% of overall

Security posture

42At risk
How it's scored
7.5/7.5Binary-Artifacts — no binaries found in the repo
2.2/7.5Branch-Protection — branch protection is not maximal on development and all release branches
0/2.5CI-Tests — no data
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
0/7.5Code-Review — Found 0/30 approved changesets -- score normalized to 0
0.8/2.5Contributors — project has 1 contributing companies or organizations -- score normalized to 3
10/10Dangerous-Workflow — no dangerous workflow patterns detected
7.5/7.5Dependency-Update-Tool — update tool detected
0/5Fuzzing — project is not fuzzed
2.5/2.5License — license file detected
7.5/7.5Maintained — 30 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 10
5/5Packaging — packaging workflow detected
0/5Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
0/5SAST — no SAST tool detected
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — Project has not signed or included provenance with any releases.
0/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
0/7.5Vulnerabilities — 14 existing vulnerabilities detected
Inputs used
sourceopenssf_scorecard
checks_evaluated17
scorecard_versionv5.5.0
checks_inconclusive1
scorecard_aggregate4.2
Excluded from scoring (no data or not applicable): ci_tests. Remaining weights renormalized.

Dependency advisories

89Excellent
How it's scored
26.6/35Direct dependencies free of known advisories — 1 affected: anyhow 1.0.102 (unknown)
0/25Indirect dependencies free of known advisories — transitive set not separable from development and test dependencies in this scope
40/40No advisories left outstanding — no advisory has been public longer than 90 days
Inputs used
sourceosv
advisories15
affected_packages14
assessed_packages668
unassessed_packages13
affected_by_severityhigh 3, unknown 11
direct_affected_packages1
Excluded from scoring (no data or not applicable): Indirect dependencies free of known advisories. Remaining weights renormalized. Matched 668 resolved dependencies against OSV. 13 could not be assessed — no resolved version, an unsupported ecosystem, or beyond the reported package list. This repository publishes no package the index resolves, so the repository dependency graph was assessed instead. That graph mixes development and test pins with shipped dependencies, so only the declared runtime dependencies are scored; transitive findings are reported as context and excluded from the score. Reachability is not analyzed.

AI Readiness

How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score.

78Good · 0% of overall

Agent context & guidance

80Good
How it's scored
45/45Agent instructions — AGENTS.md
0/15Machine-readable docs (llms.txt)
34.7/40Legible commit history — 65 of 100 human commits state their intent (structured subject or explanatory body)
Inputs used
has_llms_txtno
legible_history_share0.65
agent_instruction_filesAGENTS.md
agent_instruction_max_bytes1,412

Verify loop (build / test / typecheck)

61Moderate
How it's scored
18/18One-command bootstrap — Makefile
22/22Automated tests
0/11Lint / format config
11/11Static type checking — Rust (statically typed)
10/10Reproducible environment — Dockerfile, lockfile
0/10Demonstrated agent practice — no agent-authored commits among the last 100
0/8Automated maintenance — no automated dependency updates observed
0/10OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
Inputs used
has_nixno
has_testsyes
lockfilesCargo.lock, uv.lock
has_dockerfileyes
typed_languageyes
bootstrap_filesMakefile
has_devcontainerno
has_linter_configno
typecheck_configs—
agent_commit_share0
toolchain_manifestsCargo.toml, architecture/experiments/244-obsidian-vault-knowledge-base-with-pdf-to-markdown/scripts/rust_probe/Cargo.toml, crates/biomcp-mcp-contract-client/Cargo.toml
dependency_bot_commit_share0

Code legibility for models

99Excellent
How it's scored
45/45Type-checkable code — Rust (statically typed)
54.1/55Manageable file sizes — 13/831 source files over 60KB
Inputs used
primary_languageRust
largest_source_bytes127,679
source_files_sampled831
oversized_source_files13

Machine-readable interfaces

100Excellent
How it's scored
40/40API schema (OpenAPI/GraphQL/proto) — protos/dna_model.proto, protos/dna_model_service.proto, protos/tensor.proto
20/20MCP server
40/40Runnable examples — examples
Inputs used
example_dirsexamples
has_mcp_signalyes
api_schema_filesprotos/dna_model.proto, protos/dna_model_service.proto, protos/tensor.proto

Key facts

554GitHub stars
7contributors
2,075commits, last 12 months
0days since last push
62releases
1bus factor
0open issues
crates.io, PyPIpackage ecosystems

Data collection warnings

  • Could not fetch crates package 'biomcp-cli' from its registry

More detail

Star and fork history 554 ★ / 109 ⇿
554Stars
109Forks
62Releases

When each star and fork was added, collected from GitHub and bucketed by day. Cumulative growth sits directly above the daily additions it is made of, so the two read against each other: steady organic accretion looks nothing like an abrupt, short-lived burst. Where that difference is measurable, it is reported as growth authenticity.

0100200300400500600554105182025-042025-112026-07
Major 0Minor 8Patch 54

Each point covers 2 days.

OpenSSF Scorecard 4.2 / 10
4.2aggregate

Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).Scorecard v5.5.0 · 2026-07-21 20:25 UTC

10Binary-Artifactsno binaries found in the repo
3Branch-Protectionbranch protection is not maximal on development and all release branches
n/aCI-Testsno pull request found
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
0Code-ReviewFound 0/30 approved changesets -- score normalized to 0
3Contributorsproject has 1 contributing companies or organizations -- score normalized to 3
10Dangerous-Workflowno dangerous workflow patterns detected
10Dependency-Update-Toolupdate tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
10Maintained30 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 10
10Packagingpackaging workflow detected
0Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 0
0SASTno SAST tool detected
0Security-Policysecurity policy file not detected
0Signed-ReleasesProject has not signed or included provenance with any releases.
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
0Vulnerabilities14 existing vulnerabilities detected
Direct dependencies 52
RegistryPackageVersion constraintManifest
crates.ioclap4Cargo.toml
crates.iokuva0.1.4Cargo.toml
crates.iotokio1Cargo.toml
crates.iotokio-stream0.1Cargo.toml
crates.iotokio-util0.7Cargo.toml
crates.iofutures0.3Cargo.toml
crates.ioaxum0.8.1Cargo.toml
crates.iocacache13.1.0Cargo.toml
crates.ioreqwest0.12Cargo.toml
crates.ioreqwest-middleware0.4Cargo.toml
crates.ioreqwest-retry0.7Cargo.toml
crates.iohttp-cache0.20Cargo.toml
crates.iohttp-cache-reqwest0.15Cargo.toml
crates.iohttp-cache-semantics2Cargo.toml
crates.iohttp1Cargo.toml
crates.iotonic0.12Cargo.toml
crates.ioprost0.13Cargo.toml
crates.iozstd0.13Cargo.toml
crates.ioserde1Cargo.toml
crates.ioserde_json1Cargo.toml
crates.iobase640.22Cargo.toml
crates.iomd50.7Cargo.toml
crates.iobytesize1Cargo.toml
crates.iohumantime2Cargo.toml
crates.ioregex1Cargo.toml
crates.iocsv1Cargo.toml
crates.ioroxmltree0.20Cargo.toml
crates.ioscraper0.18Cargo.toml
crates.iossri9Cargo.toml
crates.iotoml0.8Cargo.toml
crates.iofs20.4Cargo.toml
crates.iormcp1.1.1Cargo.toml
crates.iominijinja2Cargo.toml
crates.iorust-embed8Cargo.toml
crates.ioflate21Cargo.toml
crates.iosemver1Cargo.toml
crates.iosha20.10Cargo.toml
crates.iolibc0.2Cargo.toml
crates.iotar0.4Cargo.toml
crates.iozip0.6Cargo.toml
crates.iotracing0.1Cargo.toml
crates.iotracing-subscriber0.3Cargo.toml
crates.iodirs5Cargo.toml
crates.iotime0.3Cargo.toml
crates.iochrono0.4Cargo.toml
crates.iothiserror2Cargo.toml
crates.ioanyhow1Cargo.toml
crates.ioasync-trait0.1Cargo.toml
crates.ioshlex1Cargo.toml
crates.ioreadability-rust0.1.0Cargo.toml
crates.iohtmd0.5.4Cargo.toml
crates.iounpdf0.4.5Cargo.toml
All dependencies 681

Full resolved dependency set from the GitHub dependency graph: 68 direct and 613 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.

RegistryPackageVersionRelation
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crates.iobase64—direct
crates.iobase640.21.7direct
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crates.iohttp1.4.0direct
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crates.iominijinja2.17.1direct
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crates.ioreadability-rust0.1.0direct
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crates.ioreqwest—direct
crates.ioreqwest0.12.28direct
crates.ioreqwest0.13.4direct
crates.ioreqwest-middleware0.4.2direct
crates.ioreqwest-retry0.7.0direct
crates.iormcp—direct
crates.iormcp1.7.0direct
crates.ioroxmltree0.20.0direct
crates.iorust-embed8.11.0direct
crates.ioscraper0.18.1direct
crates.iosemver1.0.27direct
crates.iosemver1.0.28direct
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crates.ioserde_json—direct
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crates.iotime0.3.47direct
crates.iotokio—direct
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crates.iocpufeatures0.2.17indirect
crates.iocpufeatures0.3.0indirect
crates.iocrc32fast1.5.0indirect
crates.iocrossbeam-channel0.5.15indirect
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crates.iofastrand2.4.1indirect
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crates.iofiletime0.2.27indirect
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crates.iofutures-executor0.3.32indirect
crates.iofutures-io0.3.32indirect
crates.iofutures-macro0.3.32indirect
crates.iofutures-sink0.3.32indirect
crates.iofutures-task0.3.32indirect
crates.iofutures-util0.3.32indirect
crates.iofxhash0.2.1indirect
crates.iogeneric-array0.14.7indirect
crates.iogetopts0.2.24indirect
crates.iogetrandom0.2.17indirect
crates.iogetrandom0.3.4indirect
crates.iogetrandom0.4.2indirect
crates.iogif0.13.3indirect
crates.ioh20.4.13indirect
crates.iohalf2.7.1indirect
crates.iohashbrown0.12.3indirect
crates.iohashbrown0.15.5indirect
crates.iohashbrown0.16.1indirect
crates.iohashbrown0.17.0indirect
crates.ioheck0.5.0indirect
crates.iohex0.4.3indirect
crates.iohmac0.12.1indirect
crates.iohtml2md0.2.15indirect
crates.iohtml5ever0.26.0indirect
crates.iohtml5ever0.27.0indirect
crates.iohtml5ever0.38.0indirect
crates.iohttp-body1.0.1indirect
crates.iohttp-body-util0.1.3indirect
crates.iohttp-serde2.1.1indirect
crates.iohttparse1.10.1indirect
crates.iohttpdate1.0.3indirect
crates.iohybrid-array0.4.10indirect
crates.iohyper1.8.1indirect
crates.iohyper-rustls0.27.7indirect
crates.iohyper-timeout0.5.2indirect
crates.iohyper-util0.1.20indirect
crates.ioiana-time-zone0.1.65indirect
crates.ioiana-time-zone-haiku0.1.2indirect
crates.ioicu_collections2.1.1indirect
crates.ioicu_collections2.2.0indirect
crates.ioicu_locale_core2.1.1indirect
crates.ioicu_locale_core2.2.0indirect
crates.ioicu_normalizer2.1.1indirect
crates.ioicu_normalizer2.2.0indirect
crates.ioicu_normalizer_data2.1.1indirect
crates.ioicu_normalizer_data2.2.0indirect
crates.ioicu_properties2.1.2indirect
crates.ioicu_properties2.2.0indirect
crates.ioicu_properties_data2.1.2indirect
crates.ioicu_properties_data2.2.0indirect
crates.ioicu_provider2.1.1indirect
crates.ioicu_provider2.2.0indirect
crates.ioid-arena2.3.0indirect
crates.ioident_case1.0.1indirect
crates.ioidna1.1.0indirect
crates.ioidna_adapter1.2.1indirect
crates.ioimage0.24.9indirect
crates.ioimage-webp0.1.3indirect
crates.ioimagesize0.13.0indirect
crates.ioindexmap1.9.3indirect
crates.ioindexmap2.13.0indirect
crates.ioindexmap2.14.0indirect
crates.ioinout0.1.4indirect
crates.ioinout0.2.2indirect
crates.ioinstant0.1.13indirect
crates.ioipnet2.12.0indirect
crates.ioiri-string0.7.10indirect
crates.iois_terminal_polyfill1.70.2indirect
crates.ioitertools0.14.0indirect
crates.ioitoa1.0.17indirect
crates.ioitoa1.0.18indirect
crates.iojiff0.2.23indirect
crates.iojiff-static0.2.23indirect
crates.iojni0.19.0indirect
crates.iojni-sys0.3.1indirect
crates.iojni-sys0.4.1indirect
crates.iojni-sys-macros0.4.1indirect
crates.iojobserver0.1.34indirect
crates.iojpeg-decoder0.3.2indirect
crates.iojs-sys0.3.91indirect
crates.iojs-sys0.3.95indirect
crates.iokurbo0.11.3indirect
crates.iolazy_static1.5.0indirect
crates.ioleb128fmt0.1.0indirect
crates.iolibm0.2.16indirect
crates.iolibredox0.1.14indirect
crates.iolinux-raw-sys0.12.1indirect
crates.iolitemap0.8.1indirect
crates.iolitemap0.8.2indirect
crates.iolock_api0.4.14indirect
crates.iolog0.4.29indirect
crates.iolru-slab0.1.2indirect
crates.iolzw0.10.0indirect
crates.iomac0.1.1indirect
crates.iomarkup5ever0.11.0indirect
crates.iomarkup5ever0.12.1indirect
crates.iomarkup5ever0.38.0indirect
crates.iomarkup5ever_rcdom0.3.0indirect
crates.iomarkup5ever_rcdom0.38.0+unofficialindirect
crates.iomatchers0.2.0indirect
crates.iomatchit0.7.3indirect
crates.iomatchit0.8.4indirect
crates.iomd-50.10.6indirect
crates.iomd-50.11.0indirect
crates.iomemchr2.8.0indirect
crates.iomemmap20.5.10indirect
crates.iomemmap20.9.11indirect
crates.iomiette5.10.0indirect
crates.iomiette-derive5.10.0indirect
crates.iomime0.3.17indirect
crates.iomime_guess2.0.5indirect
crates.iominiz_oxide0.8.9indirect
crates.iomio1.1.1indirect
crates.iomultimap0.10.1indirect
crates.ionew_debug_unreachable1.0.6indirect
crates.ionix0.31.2indirect
crates.ionom8.0.0indirect
crates.ionu-ansi-term0.50.3indirect
crates.ionum-conv0.2.0indirect
crates.ionum-traits0.2.19indirect
crates.ionum_threads0.1.7indirect
crates.ioonce_cell1.21.3indirect
crates.ioonce_cell1.21.4indirect
crates.ioonce_cell_polyfill1.70.2indirect
crates.ioopenssl-probe0.2.1indirect
crates.iooption-ext0.2.0indirect
crates.ioparking_lot0.11.2indirect
crates.ioparking_lot0.12.5indirect
crates.ioparking_lot_core0.8.6indirect
crates.ioparking_lot_core0.9.12indirect
crates.iopassword-hash0.4.2indirect
crates.iopastey0.2.1indirect
crates.iopbkdf20.11.0indirect
crates.iopdf_oxide0.3.34indirect
crates.iopercent-encoding2.3.2indirect
crates.iopetgraph0.7.1indirect
crates.iophf0.10.1indirect
crates.iophf0.11.3indirect
crates.iophf0.13.1indirect
crates.iophf_codegen0.10.0indirect
crates.iophf_codegen0.11.3indirect
crates.iophf_codegen0.13.1indirect
crates.iophf_generator0.10.0indirect
crates.iophf_generator0.11.3indirect
crates.iophf_generator0.13.1indirect
crates.iophf_macros0.11.3indirect
crates.iophf_macros0.13.1indirect
crates.iophf_shared0.10.0indirect
crates.iophf_shared0.11.3indirect
crates.iophf_shared0.13.1indirect
crates.iopico-args0.5.0indirect
crates.iopin-project1.1.11indirect
crates.iopin-project-internal1.1.11indirect
crates.iopin-project-lite0.2.17indirect
crates.iopin-utils0.1.0indirect
crates.iopkg-config0.3.32indirect
crates.ioplain0.2.3indirect
crates.iopng0.17.16indirect
crates.ioportable-atomic1.13.1indirect
crates.ioportable-atomic-util0.2.7indirect
crates.iopotential_utf0.1.4indirect
crates.iopotential_utf0.1.5indirect
crates.iopowerfmt0.2.0indirect
crates.ioppv-lite860.2.21indirect
crates.ioprecomputed-hash0.1.1indirect
crates.ioprettyplease0.2.37indirect
crates.ioproc-macro21.0.106indirect
crates.ioprocess-wrap9.1.0indirect
crates.ioprost-build0.13.5indirect
crates.ioprost-derive0.13.5indirect
crates.ioprost-types0.13.5indirect
crates.ioquick-error2.0.1indirect
crates.ioquick-xml0.39.2indirect
crates.ioquinn0.11.9indirect
crates.ioquinn-proto0.11.14indirect
crates.ioquinn-udp0.5.14indirect
crates.ioquote1.0.45indirect
crates.ior-efi5.3.0indirect
crates.ior-efi6.0.0indirect
crates.iorand0.10.1indirect
crates.iorand0.8.6indirect
crates.iorand0.9.4indirect
crates.iorand_chacha0.3.1indirect
crates.iorand_chacha0.9.0indirect
crates.iorand_core0.10.0indirect
crates.iorand_core0.6.4indirect
crates.iorand_core0.9.5indirect
crates.iorayon1.12.0indirect
crates.iorayon-core1.13.0indirect
crates.iorc40.2.0indirect
crates.ioredox_syscall0.2.16indirect
crates.ioredox_syscall0.5.18indirect
crates.ioredox_syscall0.7.3indirect
crates.ioredox_users0.4.6indirect
crates.ioref-cast1.0.25indirect
crates.ioref-cast-impl1.0.25indirect
crates.ioreflink-copy0.1.29indirect
crates.ioregex-automata0.4.14indirect
crates.ioregex-syntax0.8.10indirect
crates.ioresvg0.44.0indirect
crates.ioretry-policies0.4.0indirect
crates.iorexpect0.7.0indirect
crates.iorgb0.8.53indirect
crates.ioring0.17.14indirect
crates.iormcp-macros1.7.0indirect
crates.iorust-embed-impl8.11.0indirect
crates.iorust-embed-utils8.11.0indirect
crates.iorustc-hash2.1.1indirect
crates.iorustix1.1.4indirect
crates.iorustls0.23.37indirect
crates.iorustls-native-certs0.8.3indirect
crates.iorustls-pemfile2.2.0indirect
crates.iorustls-pki-types1.14.0indirect
crates.iorustls-webpki0.103.13indirect
crates.iorustversion1.0.22indirect
crates.iorustybuzz0.18.0indirect
crates.ioryu1.0.23indirect
crates.iosame-file1.0.6indirect
crates.ioschannel0.1.28indirect
crates.ioschemars1.2.1indirect
crates.ioschemars_derive1.2.1indirect
crates.ioscopeguard1.2.0indirect
crates.iosecurity-framework3.7.0indirect
crates.iosecurity-framework-sys2.17.0indirect
crates.ioselectors0.25.0indirect
crates.ioserde_core1.0.228indirect
crates.ioserde_derive1.0.228indirect
crates.ioserde_derive_internals0.29.1indirect
crates.ioserde_path_to_error0.1.20indirect
crates.ioserde_spanned0.6.9indirect
crates.ioserde_urlencoded0.7.1indirect
crates.ioserial_test3.5.0indirect
crates.ioserial_test_derive3.5.0indirect
crates.ioservo_arc0.3.0indirect
crates.iosha-10.10.1indirect
crates.iosha10.10.6indirect
crates.iosharded-slab0.1.7indirect
crates.iosignal-hook-registry1.4.8indirect
crates.iosimd-adler320.3.8indirect
crates.iosimd-adler320.3.9indirect
crates.iosimplecss0.2.2indirect
crates.iosiphasher0.3.11indirect
crates.iosiphasher1.0.2indirect
crates.ioslab0.4.12indirect
crates.ioslotmap1.1.1indirect
crates.iosmallvec1.15.1indirect
crates.iosocket20.5.10indirect
crates.iosocket20.6.2indirect
crates.iosse-stream0.2.1indirect
crates.iostable_deref_trait1.2.1indirect
crates.iostrict-num0.1.1indirect
crates.iostring_cache0.8.9indirect
crates.iostring_cache0.9.0indirect
crates.iostring_cache_codegen0.5.4indirect
crates.iostring_cache_codegen0.6.1indirect
crates.iostringprep0.1.5indirect
crates.iostrsim0.11.1indirect
crates.iosubtle2.6.1indirect
crates.iosvgtypes0.15.3indirect
crates.iosyn1.0.109indirect
crates.iosyn2.0.117indirect
crates.iosync_wrapper1.0.2indirect
crates.iosynstructure0.13.2indirect
crates.iotempfile—indirect
crates.iotempfile3.26.0indirect
crates.iotendril0.4.3indirect
crates.iotendril0.5.0indirect
crates.iothiserror-impl1.0.69indirect
crates.iothiserror-impl2.0.18indirect
crates.iothread_local1.1.9indirect
crates.iotiff0.11.3indirect
crates.iotiff0.9.1indirect
crates.iotime-core0.1.8indirect
crates.iotime-macros0.2.27indirect
crates.iotiny-skia0.11.4indirect
crates.iotiny-skia-path0.11.4indirect
crates.iotinystr0.8.2indirect
crates.iotinystr0.8.3indirect
crates.iotinyvec1.10.0indirect
crates.iotinyvec1.11.0indirect
crates.iotinyvec_macros0.1.1indirect
crates.iotokio-macros2.6.1indirect
crates.iotokio-rustls0.26.4indirect
crates.iotoml_datetime0.6.11indirect
crates.iotoml_edit0.22.27indirect
crates.iotoml_write0.1.2indirect
crates.iotonic-build0.12.3indirect
crates.iotower0.4.13indirect
crates.iotower0.5.3indirect
crates.iotower-http0.6.8indirect
crates.iotower-layer0.3.3indirect
crates.iotower-service0.3.3indirect
crates.iotracing-attributes0.1.31indirect
crates.iotracing-core0.1.36indirect
crates.iotracing-log0.2.0indirect
crates.iotry-lock0.2.5indirect
crates.iottf-parser0.24.1indirect
crates.iottf-parser0.25.1indirect
crates.iotypenum1.19.0indirect
crates.iounicase2.9.0indirect
crates.iounicode-bidi0.3.18indirect
crates.iounicode-bidi-mirroring0.3.0indirect
crates.iounicode-ccc0.3.0indirect
crates.iounicode-ident1.0.24indirect
crates.iounicode-normalization0.1.25indirect
crates.iounicode-properties0.1.4indirect
crates.iounicode-script0.5.8indirect
crates.iounicode-vo0.1.0indirect
crates.iounicode-width0.1.14indirect
crates.iounicode-width0.2.2indirect
crates.iounicode-xid0.2.6indirect
crates.iountrusted0.9.0indirect
crates.iourl2.5.8indirect
crates.iousvg0.44.0indirect
crates.ioutf-80.7.6indirect
crates.ioutf8_iter1.0.4indirect
crates.ioutf8parse0.2.2indirect
crates.iouuid1.22.0indirect
crates.iouuid1.23.1indirect
crates.iovaluable0.1.1indirect
crates.ioversion_check0.9.5indirect
crates.iowalkdir2.5.0indirect
crates.iowant0.3.1indirect
crates.iowasi0.11.1+wasi-snapshot-preview1indirect
crates.iowasip21.0.2+wasi-0.2.9indirect
crates.iowasip21.0.3+wasi-0.2.9indirect
crates.iowasip30.4.0+wasi-0.3.0-rc-2026-01-06indirect
crates.iowasm-bindgen0.2.114indirect
crates.iowasm-bindgen0.2.118indirect
crates.iowasm-bindgen-futures0.4.64indirect
crates.iowasm-bindgen-macro0.2.114indirect
crates.iowasm-bindgen-macro0.2.118indirect
crates.iowasm-bindgen-macro-support0.2.114indirect
crates.iowasm-bindgen-macro-support0.2.118indirect
crates.iowasm-bindgen-shared0.2.114indirect
crates.iowasm-bindgen-shared0.2.118indirect
crates.iowasm-encoder0.244.0indirect
crates.iowasm-metadata0.244.0indirect
crates.iowasm-streams0.5.0indirect
crates.iowasm-timer0.2.5indirect
crates.iowasmparser0.244.0indirect
crates.ioweb-sys0.3.91indirect
crates.ioweb-time1.1.0indirect
crates.ioweb_atoms0.2.4indirect
crates.iowebpki-roots1.0.6indirect
crates.ioweezl0.1.12indirect
crates.iowinapi0.3.9indirect
crates.iowinapi-i686-pc-windows-gnu0.4.0indirect
crates.iowinapi-util0.1.11indirect
crates.iowinapi-x86_64-pc-windows-gnu0.4.0indirect
crates.iowindows0.62.2indirect
crates.iowindows-collections0.3.2indirect
crates.iowindows-core0.62.2indirect
crates.iowindows-future0.3.2indirect
crates.iowindows-implement0.60.2indirect
crates.iowindows-interface0.59.3indirect
crates.iowindows-link0.2.1indirect
crates.iowindows-numerics0.3.1indirect
crates.iowindows-result0.4.1indirect
crates.iowindows-strings0.5.1indirect
crates.iowindows-sys0.48.0indirect
crates.iowindows-sys0.52.0indirect
crates.iowindows-sys0.60.2indirect
crates.iowindows-sys0.61.2indirect
crates.iowindows-targets0.48.5indirect
crates.iowindows-targets0.52.6indirect
crates.iowindows-targets0.53.5indirect
crates.iowindows-threading0.2.1indirect
crates.iowindows_aarch64_gnullvm0.48.5indirect
crates.iowindows_aarch64_gnullvm0.52.6indirect
crates.iowindows_aarch64_gnullvm0.53.1indirect
crates.iowindows_aarch64_msvc0.48.5indirect
crates.iowindows_aarch64_msvc0.52.6indirect
crates.iowindows_aarch64_msvc0.53.1indirect
crates.iowindows_i686_gnu0.48.5indirect
crates.iowindows_i686_gnu0.52.6indirect
crates.iowindows_i686_gnu0.53.1indirect
crates.iowindows_i686_gnullvm0.52.6indirect
crates.iowindows_i686_gnullvm0.53.1indirect
crates.iowindows_i686_msvc0.48.5indirect
crates.iowindows_i686_msvc0.52.6indirect
crates.iowindows_i686_msvc0.53.1indirect
crates.iowindows_x86_64_gnu0.48.5indirect
crates.iowindows_x86_64_gnu0.52.6indirect
crates.iowindows_x86_64_gnu0.53.1indirect
crates.iowindows_x86_64_gnullvm0.48.5indirect
crates.iowindows_x86_64_gnullvm0.52.6indirect
crates.iowindows_x86_64_gnullvm0.53.1indirect
crates.iowindows_x86_64_msvc0.48.5indirect
crates.iowindows_x86_64_msvc0.52.6indirect
crates.iowindows_x86_64_msvc0.53.1indirect
crates.iowinnow0.7.15indirect
crates.iowit-bindgen0.51.0indirect
crates.iowit-bindgen0.57.1indirect
crates.iowit-bindgen-core0.51.0indirect
crates.iowit-bindgen-rust0.51.0indirect
crates.iowit-bindgen-rust-macro0.51.0indirect
crates.iowit-component0.244.0indirect
crates.iowit-parser0.244.0indirect
crates.iowriteable0.6.2indirect
crates.iowriteable0.6.3indirect
crates.ioxattr1.6.1indirect
crates.ioxml5ever0.18.1indirect
crates.ioxml5ever0.38.0indirect
crates.ioxmlwriter0.1.0indirect
crates.ioxxhash-rust0.8.15indirect
crates.ioyoke0.8.1indirect
crates.ioyoke0.8.2indirect
crates.ioyoke-derive0.8.1indirect
crates.ioyoke-derive0.8.2indirect
crates.iozerocopy0.8.40indirect
crates.iozerocopy0.8.48indirect
crates.iozerocopy-derive0.8.40indirect
crates.iozerocopy-derive0.8.48indirect
crates.iozerofrom0.1.6indirect
crates.iozerofrom0.1.7indirect
crates.iozerofrom-derive0.1.6indirect
crates.iozerofrom-derive0.1.7indirect
crates.iozeroize1.8.2indirect
crates.iozerotrie0.2.3indirect
crates.iozerotrie0.2.4indirect
crates.iozerovec0.11.5indirect
crates.iozerovec0.11.6indirect
crates.iozerovec-derive0.11.2indirect
crates.iozerovec-derive0.11.3indirect
crates.iozlib-rs0.6.3indirect
crates.iozmij1.0.21indirect
crates.iozstd-safe5.0.2+zstd.1.5.2indirect
crates.iozstd-safe7.2.4indirect
crates.iozstd-sys2.0.16+zstd.1.5.7indirect
crates.iozune-core0.4.12indirect
crates.iozune-core0.5.1indirect
crates.iozune-jpeg0.4.21indirect
crates.iozune-jpeg0.5.15indirect
PyPIattrs25.4.0indirect
PyPIbabel2.18.0indirect
PyPIbackports-asyncio-runner1.2.0indirect
PyPIbackrefs6.2indirect
PyPIbeautifulsoup4—indirect
PyPIbiomcp-cli0.8.25indirect
PyPIcertifi2026.1.4indirect
PyPIcharset-normalizer3.4.4indirect
PyPIclick8.3.1indirect
PyPIcolorama0.4.6indirect
PyPIexceptiongroup1.3.1indirect
PyPIexecnet2.1.2indirect
PyPIfeedparser—indirect
PyPIghp-import2.1.0indirect
PyPIidna3.18indirect
PyPIiniconfig2.3.0indirect
PyPIjinja23.1.6indirect
PyPIjsonschema4.26.0indirect
PyPIjsonschema-specifications2025.9.1indirect
PyPImarkdown3.10.2indirect
PyPImarkupsafe3.0.3indirect
PyPImergedeep1.3.4indirect
PyPImkdocs1.6.1indirect
PyPImkdocs-get-deps0.2.0indirect
PyPImkdocs-material9.7.2indirect
PyPImkdocs-material-extensions1.3.1indirect
PyPIpackaging26.0indirect
PyPIpaginate0.5.7indirect
PyPIpathspec1.0.4indirect
PyPIplatformdirs4.9.2indirect
PyPIpluggy1.6.0indirect
PyPIpygments2.20.0indirect
PyPIpymdown-extensions10.21.3indirect
PyPIpytest9.0.3indirect
PyPIpytest-asyncio1.3.0indirect
PyPIpytest-timeout2.4.0indirect
PyPIpytest-xdist3.8.0indirect
PyPIpython-dateutil—indirect
PyPIpython-dateutil2.9.0.post0indirect
PyPIpyyaml6.0.3indirect
PyPIpyyaml-env-tag1.1indirect
PyPIreferencing0.37.0indirect
PyPIregex2026.7.19indirect
PyPIrequests—indirect
PyPIrequests2.34.2indirect
PyPIrpds-py0.30.0indirect
PyPIsetuptools—indirect
PyPIsix1.17.0indirect
PyPItiktoken0.12.0indirect
PyPItomli2.4.0indirect
PyPItrafilatura—indirect
PyPItyping-extensions4.15.0indirect
PyPIurllib32.7.0indirect
PyPIwatchdog6.0.0indirect
Dependency advisories 14

This repository publishes no package the index resolves, so its own dependency graph was assessed — 668 packages, which also include development and test pins that never ship: 14 carry known advisories, of which 1 are direct. 13 could not be assessed — no resolved version, an unsupported ecosystem, or beyond the reported package list.

PackageVersionRelationSeverityAdvisoriesFixed in
click8.3.1indirecthigh18.3.3
quick-xml0.39.2indirecthigh20.41.0
quinn-proto0.11.14indirecthigh10.11.15
anyhow1.0.102directunknown11.0.103
bincode1.3.3indirectunknown1—
crossbeam-epoch0.9.18indirectunknown10.9.20
fxhash0.2.1indirectunknown1—
instant0.1.13indirectunknown1—
lzw0.10.0indirectunknown10.10.1-0
memmap20.5.10indirectunknown10.9.11
rustls-pemfile2.2.0indirectunknown1—
rustybuzz0.18.0indirectunknown1—
ttf-parser0.24.1indirectunknown1—
ttf-parser0.25.1indirectunknown1—

An advisory means the version recorded in the dependency graph falls inside an advisory’s affected range. Reachability is not analysed, and the graph includes development and test pins — a finding may concern tooling rather than shipped software.

Raw JSON report machine-readable
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          "commits": 1,
          "avatar_url": "https://avatars.githubusercontent.com/u/3286525?v=4"
        },
        {
          "type": "User",
          "login": "henroger",
          "commits": 1,
          "avatar_url": "https://avatars.githubusercontent.com/u/194558532?v=4"
        },
        {
          "type": "User",
          "login": "renato-umeton",
          "commits": 1,
          "avatar_url": "https://avatars.githubusercontent.com/u/25375373?v=4"
        }
      ],
      "contributors_sampled": 7,
      "top_contributor_share": 0.966
    },
    "quality_signals": {
      "has_ci": true,
      "has_tests": true,
      "ci_workflows": [
        "ci.yml",
        "contracts.yml",
        "release.yml"
      ],
      "has_docs_dir": true,
      "linter_configs": [],
      "has_editorconfig": false,
      "has_linter_config": false,
      "has_precommit_config": false
    },
    "security_signals": {
      "lockfiles": [
        "Cargo.lock",
        "uv.lock"
      ],
      "scorecard": {
        "checks": [
          {
            "name": "Binary-Artifacts",
            "score": 10,
            "reason": "no binaries found in the repo",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
          },
          {
            "name": "Branch-Protection",
            "score": 3,
            "reason": "branch protection is not maximal on development and all release branches",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
          },
          {
            "name": "CI-Tests",
            "score": null,
            "reason": "no pull request found",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
          },
          {
            "name": "CII-Best-Practices",
            "score": 0,
            "reason": "no effort to earn an OpenSSF best practices badge detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
          },
          {
            "name": "Code-Review",
            "score": 0,
            "reason": "Found 0/30 approved changesets -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
          },
          {
            "name": "Contributors",
            "score": 3,
            "reason": "project has 1 contributing companies or organizations -- score normalized to 3",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
          },
          {
            "name": "Dangerous-Workflow",
            "score": 10,
            "reason": "no dangerous workflow patterns detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
          },
          {
            "name": "Dependency-Update-Tool",
            "score": 10,
            "reason": "update tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
          },
          {
            "name": "Fuzzing",
            "score": 0,
            "reason": "project is not fuzzed",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
          },
          {
            "name": "License",
            "score": 10,
            "reason": "license file detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
          },
          {
            "name": "Maintained",
            "score": 10,
            "reason": "30 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 10",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
          },
          {
            "name": "Packaging",
            "score": 10,
            "reason": "packaging workflow detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
          },
          {
            "name": "Pinned-Dependencies",
            "score": 0,
            "reason": "dependency not pinned by hash detected -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
          },
          {
            "name": "SAST",
            "score": 0,
            "reason": "no SAST tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
          },
          {
            "name": "Security-Policy",
            "score": 0,
            "reason": "security policy file not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
          },
          {
            "name": "Signed-Releases",
            "score": 0,
            "reason": "Project has not signed or included provenance with any releases.",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
          },
          {
            "name": "Token-Permissions",
            "score": 0,
            "reason": "detected GitHub workflow tokens with excessive permissions",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
          },
          {
            "name": "Vulnerabilities",
            "score": 0,
            "reason": "14 existing vulnerabilities detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
          }
        ],
        "commit": "5edf84f3300ff0a176ca6928ad2727eacfdd21ee",
        "ran_at": "2026-07-21T20:25:04Z",
        "aggregate_score": 4.2,
        "scorecard_version": "v5.5.0"
      },
      "has_codeql_workflow": false,
      "has_security_policy": false,
      "has_dependabot_config": false
    }
  },
  "config": {
    "disabled_metrics": [],
    "disabled_categories": [],
    "disabled_components": {}
  },
  "source": {
    "url": "https://github.com/genomoncology/biomcp",
    "host": "github.com",
    "name": "biomcp",
    "owner": "genomoncology"
  },
  "metrics": {
    "overall": {
      "key": "overall",
      "band": "good",
      "name": "Overall health",
      "note": null,
      "notes": [],
      "value": 71,
      "inputs": {
        "security": 51,
        "vitality": 89,
        "community": 74,
        "governance": 63,
        "engineering": 72
      },
      "components": []
    },
    "categories": [
      {
        "key": "vitality",
        "band": "excellent",
        "name": "Vitality",
        "value": 89,
        "weight": 0.22,
        "metrics": [
          {
            "key": "development_activity",
            "band": "excellent",
            "name": "Development activity",
            "note": null,
            "notes": [],
            "value": 89,
            "inputs": {
              "commits_last_year": 2075,
              "human_commit_share": 1,
              "days_since_last_push": 0,
              "active_weeks_last_year": 36
            },
            "components": [
              {
                "key": "push_recency",
                "name": "Push recency",
                "detail": "last push 0 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "push_recency",
                    "params": {
                      "days": 0
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                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_cadence",
                "name": "Commit cadence",
                "detail": "36/52 weeks with commits",
                "points": 24.9,
                "status": "partial",
                "details": [
                  {
                    "code": "commit_cadence_weeks",
                    "params": {
                      "weeks": 36
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_volume",
                "name": "Commit volume",
                "detail": "2075 commits in the last year",
                "points": 18,
                "status": "met",
                "details": [
                  {
                    "code": "commits_last_year",
                    "params": {
                      "count": 2075
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "openssf_scorecard_maintained",
                "name": "OpenSSF Scorecard: Maintained",
                "detail": "30 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 10",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "release_discipline",
            "band": "excellent",
            "name": "Release discipline",
            "note": null,
            "notes": [],
            "value": 90,
            "inputs": {
              "releases_count": 62,
              "latest_release_tag": "v0.8.25",
              "releases_from_tags": false,
              "days_since_latest_release": 13,
              "mean_days_between_releases": 12.5
            },
            "components": [
              {
                "key": "ships_releases",
                "name": "Ships releases",
                "detail": "62 releases published",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "releases_published",
                    "params": {
                      "count": 62
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                  }
                ],
                "max_points": 27
              },
              {
                "key": "release_recency",
                "name": "Release recency",
                "detail": "latest release 13 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "release_recency",
                    "params": {
                      "days": 13
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                ],
                "max_points": 36
              },
              {
                "key": "release_cadence",
                "name": "Release cadence",
                "detail": "a release every ~12.5 days",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "release_cadence",
                    "params": {
                      "gap": 12.5
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                ],
                "max_points": 27
              },
              {
                "key": "openssf_scorecard_signed_releases",
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                "detail": "Project has not signed or included provenance with any releases.",
                "points": 0,
                "status": "missed",
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                "max_points": 10
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            ]
          },
          {
            "key": "abandonment",
            "band": "excellent",
            "name": "Abandonment",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "cap": null,
              "state": "maintained",
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              "signals": [],
              "red_flag": false,
              "multiplier_pct": 100,
              "declared_reason": null,
              "unverified_reason": null,
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              "days_since_last_merged_pr": null,
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              "days_since_last_human_commit_is_floor": false
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            "components": [
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                "key": "project_is_still_maintained",
                "name": "Project is still maintained",
                "detail": "last human commit 0 days ago",
                "points": 100,
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                    "code": "abandonment_maintained",
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                "max_points": 100
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            ]
          }
        ],
        "description": "Is the project alive — is code being written and are releases shipping?"
      },
      {
        "key": "community",
        "band": "good",
        "name": "Community & Adoption",
        "value": 74,
        "weight": 0.18,
        "metrics": [
          {
            "key": "popularity",
            "band": "moderate",
            "name": "Popularity & adoption",
            "note": null,
            "notes": [],
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              "stars": 554,
              "watchers": 6,
              "growth_state": "organic",
              "growth_factor_pct": 100
            },
            "components": [
              {
                "key": "stars",
                "name": "Stars",
                "detail": "554 stars",
                "points": 44.5,
                "status": "partial",
                "details": [
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                    "code": "stars",
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                      "count": 554
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                  }
                ],
                "max_points": 60
              },
              {
                "key": "forks",
                "name": "Forks",
                "detail": "109 forks",
                "points": 16.9,
                "status": "partial",
                "details": [
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                    "code": "forks",
                    "params": {
                      "count": 109
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                  }
                ],
                "max_points": 25
              },
              {
                "key": "watchers",
                "name": "Watchers",
                "detail": "6 watchers",
                "points": 3.9,
                "status": "partial",
                "details": [
                  {
                    "code": "watchers",
                    "params": {
                      "count": 6
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                  }
                ],
                "max_points": 15
              }
            ]
          },
          {
            "key": "community_health",
            "band": "excellent",
            "name": "Community health",
            "note": null,
            "notes": [],
            "value": 85,
            "inputs": {
              "has_readme": true,
              "has_license": true,
              "has_contributing": true,
              "has_issue_template": false,
              "has_code_of_conduct": true,
              "has_pull_request_template": false
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 22.5,
                "status": "met",
                "details": [],
                "max_points": 22.5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "recognized license (MIT)",
                "points": 22.5,
                "status": "met",
                "details": [
                  {
                    "code": "license_standard",
                    "params": {}
                  },
                  {
                    "code": "license_spdx",
                    "params": {
                      "spdx": "MIT"
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                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributing_guide",
                "name": "CONTRIBUTING guide",
                "detail": null,
                "points": 18,
                "status": "met",
                "details": [],
                "max_points": 18
              },
              {
                "key": "code_of_conduct",
                "name": "Code of conduct",
                "detail": null,
                "points": 13.5,
                "status": "met",
                "details": [],
                "max_points": 13.5
              },
              {
                "key": "issue_template",
                "name": "Issue template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.2
              },
              {
                "key": "pr_template",
                "name": "PR template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.3
              }
            ]
          }
        ],
        "description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
      },
      {
        "key": "governance",
        "band": "moderate",
        "name": "Sustainability & Governance",
        "value": 63,
        "weight": 0.24,
        "metrics": [
          {
            "key": "maintainer_resilience",
            "band": "critical",
            "name": "Maintainer resilience (bus factor)",
            "note": null,
            "notes": [],
            "value": 22,
            "inputs": {
              "bus_factor": 1,
              "contributors_sampled": 7,
              "top_contributor_share": 0.966
            },
            "components": [
              {
                "key": "bus_factor",
                "name": "Bus factor",
                "detail": "1 contributor(s) cover half of all commits",
                "points": 9,
                "status": "partial",
                "details": [
                  {
                    "code": "bus_factor",
                    "params": {
                      "count": 1
                    }
                  }
                ],
                "max_points": 54
              },
              {
                "key": "commit_distribution",
                "name": "Commit distribution",
                "detail": "top contributor authored 97% of commits",
                "points": 0.8,
                "status": "partial",
                "details": [
                  {
                    "code": "top_contributor_share",
                    "params": {
                      "share": 97
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributor_breadth",
                "name": "Contributor breadth",
                "detail": "7 contributors",
                "points": 9.5,
                "status": "partial",
                "details": [
                  {
                    "code": "contributors_sampled",
                    "params": {
                      "count": 7
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                  }
                ],
                "max_points": 13.5
              },
              {
                "key": "openssf_scorecard_contributors",
                "name": "OpenSSF Scorecard: Contributors",
                "detail": "project has 1 contributing companies or organizations -- score normalized to 3",
                "points": 3,
                "status": "partial",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "responsiveness",
            "band": "good",
            "name": "Issue & PR responsiveness",
            "note": null,
            "notes": [],
            "value": 82,
            "inputs": {
              "merged_prs": 177,
              "open_issues": 0,
              "closed_issues": 42,
              "issue_closed_ratio": 1,
              "closed_unmerged_prs": 17
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            "components": [
              {
                "key": "issue_resolution",
                "name": "Issue resolution",
                "detail": "100% of issues closed",
                "points": 46.8,
                "status": "met",
                "details": [
                  {
                    "code": "issues_closed_share",
                    "params": {
                      "share": 100
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                  }
                ],
                "max_points": 46.75
              },
              {
                "key": "pr_acceptance",
                "name": "PR acceptance",
                "detail": "177/194 decided PRs merged",
                "points": 34.9,
                "status": "partial",
                "details": [
                  {
                    "code": "decided_prs_merged",
                    "params": {
                      "merged": 177,
                      "decided": 194
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                  }
                ],
                "max_points": 38.25
              },
              {
                "key": "openssf_scorecard_code_review",
                "name": "OpenSSF Scorecard: Code-Review",
                "detail": "Found 0/30 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              }
            ]
          },
          {
            "key": "stewardship",
            "band": "moderate",
            "name": "Ownership & stewardship",
            "note": null,
            "notes": [],
            "value": 64,
            "inputs": {
              "followers": 37,
              "owner_type": "Organization",
              "is_verified": null,
              "owner_login": "genomoncology",
              "public_repos": 29,
              "account_age_days": 4884
            },
            "components": [
              {
                "key": "ownership_backing",
                "name": "Ownership backing",
                "detail": "organization-owned",
                "points": 30,
                "status": "met",
                "details": [
                  {
                    "code": "owner_organization",
                    "params": {}
                  }
                ],
                "max_points": 30
              },
              {
                "key": "verified_domain",
                "name": "Verified domain",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "owner_reach",
                "name": "Owner reach",
                "detail": "37 followers of genomoncology",
                "points": 11.4,
                "status": "partial",
                "details": [
                  {
                    "code": "owner_followers",
                    "params": {
                      "count": 37,
                      "login": "genomoncology"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "track_record",
                "name": "Track record",
                "detail": "29 public repos, account ~13 yr old",
                "points": 22.8,
                "status": "partial",
                "details": [
                  {
                    "code": "public_repos",
                    "params": {
                      "count": 29
                    }
                  },
                  {
                    "code": "account_age_years",
                    "params": {
                      "years": 13
                    }
                  }
                ],
                "max_points": 25
              }
            ]
          },
          {
            "key": "package_maintenance",
            "band": "excellent",
            "name": "Package maintenance",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "packages": [
                "biomcp-cli"
              ],
              "ecosystems": "pypi",
              "any_deprecated": false,
              "min_days_since_publish": 12
            },
            "components": [
              {
                "key": "published_resolvable",
                "name": "Published & resolvable",
                "detail": "1 package(s) on pypi",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "packages_published",
                    "params": {
                      "count": 1,
                      "ecosystems": "pypi"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "publish_recency",
                "name": "Publish recency",
                "detail": "latest publish 12 days ago",
                "points": 35,
                "status": "met",
                "details": [
                  {
                    "code": "publish_recency",
                    "params": {
                      "days": 12
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                  }
                ],
                "max_points": 35
              },
              {
                "key": "version_history",
                "name": "Version history",
                "detail": "12 published versions",
                "points": 20,
                "status": "met",
                "details": [
                  {
                    "code": "published_versions",
                    "params": {
                      "count": 12
                    }
                  }
                ],
                "max_points": 20
              },
              {
                "key": "not_deprecated",
                "name": "Not deprecated",
                "detail": "active, not deprecated or yanked",
                "points": 20,
                "status": "met",
                "details": [
                  {
                    "code": "package_not_deprecated",
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                  }
                ],
                "max_points": 20
              }
            ]
          }
        ],
        "description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
      },
      {
        "key": "engineering",
        "band": "good",
        "name": "Engineering Quality",
        "value": 72,
        "weight": 0.2,
        "metrics": [
          {
            "key": "engineering_practices",
            "band": "moderate",
            "name": "Engineering practices",
            "note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: CI-Tests. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "openssf_scorecard_ci_tests"
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                }
              },
              {
                "code": "weights_renormalized",
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              }
            ],
            "value": 60,
            "inputs": {
              "has_ci": true,
              "has_tests": true,
              "has_editorconfig": false,
              "has_linter_config": false,
              "has_precommit_config": false
            },
            "components": [
              {
                "key": "ci_workflows",
                "name": "CI workflows",
                "detail": "3 workflow(s)",
                "points": 24,
                "status": "met",
                "details": [
                  {
                    "code": "ci_workflows",
                    "params": {
                      "count": 3
                    }
                  }
                ],
                "max_points": 24
              },
              {
                "key": "tests_present",
                "name": "Tests present",
                "detail": null,
                "points": 24,
                "status": "met",
                "details": [],
                "max_points": 24
              },
              {
                "key": "linter_config",
                "name": "Linter config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 16
              },
              {
                "key": "pre_commit_hooks",
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                "detail": null,
                "points": 0,
                "status": "missed",
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                "max_points": 9.6
              },
              {
                "key": "editorconfig",
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                "details": [],
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              },
              {
                "key": "openssf_scorecard_ci_tests",
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                "detail": "no pull request found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 20
              }
            ]
          },
          {
            "key": "documentation",
            "band": "excellent",
            "name": "Documentation",
            "note": null,
            "notes": [],
            "value": 90,
            "inputs": {
              "topics": [
                "ai",
                "bioinformatics",
                "clinical-trials",
                "genomics",
                "llm",
                "mcp",
                "mcp-server",
                "medical",
                "model-context-protocol",
                "pubmed",
                "pubmed-central"
              ],
              "has_wiki": false,
              "homepage": "https://biomcp.org/",
              "has_readme": true,
              "has_docs_dir": true,
              "has_description": true
            },
            "components": [
              {
                "key": "readme",
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                "points": 30,
                "status": "met",
                "details": [],
                "max_points": 30
              },
              {
                "key": "documentation_directory",
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                "detail": null,
                "points": 25,
                "status": "met",
                "details": [],
                "max_points": 25
              },
              {
                "key": "documentation_homepage_site",
                "name": "Documentation / homepage site",
                "detail": "https://biomcp.org/",
                "points": 15,
                "status": "met",
                "details": [],
                "max_points": 15
              },
              {
                "key": "repository_description",
                "name": "Repository description",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "topics",
                "name": "Topics",
                "detail": "11 topics",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "topics_count",
                    "params": {
                      "count": 11
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "wiki",
                "name": "Wiki",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
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              }
            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
      },
      {
        "key": "security",
        "band": "moderate",
        "name": "Security",
        "value": 51,
        "weight": 0.16,
        "metrics": [
          {
            "key": "security_posture",
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            "name": "Security posture",
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            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "ci_tests"
                  ]
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              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 1,
              "scorecard_aggregate": 4.2
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            "components": [
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                "key": "binary_artifacts",
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                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "branch protection is not maximal on development and all release branches",
                "points": 2.2,
                "status": "partial",
                "details": [],
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              },
              {
                "key": "ci_tests",
                "name": "CI-Tests",
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                "status": "excluded",
                "details": [
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              },
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                "status": "missed",
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              },
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                "key": "code_review",
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              },
              {
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              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no dangerous workflow patterns detected",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "update tool detected",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
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              },
              {
                "key": "license",
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              },
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                "key": "maintained",
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              },
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                "points": 5,
                "status": "met",
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              },
              {
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                "status": "missed",
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                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
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                "status": "missed",
                "details": [],
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              },
              {
                "key": "security_policy",
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                "status": "missed",
                "details": [],
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              },
              {
                "key": "signed_releases",
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                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "token_permissions",
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                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
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                "points": 0,
                "status": "missed",
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                "max_points": 7.5
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          },
          {
            "key": "dependency_advisories",
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            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "indirect_dependencies_free_of_known_advisories"
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                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              },
              {
                "code": "advisories_scope_repository",
                "params": {
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                }
              },
              {
                "code": "advisories_unassessed",
                "params": {
                  "count": 13
                }
              },
              {
                "code": "advisories_repo_graph_caveat",
                "params": {}
              },
              {
                "code": "advisories_reachability",
                "params": {}
              }
            ],
            "value": 89,
            "inputs": {
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              "affected_packages": 14,
              "assessed_packages": 668,
              "unassessed_packages": 13,
              "affected_by_severity": "high 3, unknown 11",
              "direct_affected_packages": 1
            },
            "components": [
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                    }
                  }
                ],
                "max_points": 35
              },
              {
                "key": "indirect_dependencies_free_of_known_advisories",
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                "points": 0,
                "status": "excluded",
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              "packages": [],
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          {
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            "notes": [
              {
                "code": "jurisdiction_evidence_limits",
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              }
            ],
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                "Iran",
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      },
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                "details": [
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              "toolchain_manifests": [
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              "dependency_bot_commit_share": 0
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                "status": "met",
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              {
                "key": "demonstrated_agent_practice",
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                "status": "missed",
                "details": [
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                "key": "automated_maintenance",
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                "points": 0,
                "status": "missed",
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            ]
          },
          {
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            "notes": [],
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            "inputs": {
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              "largest_source_bytes": 127679,
              "source_files_sampled": 831,
              "oversized_source_files": 13
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                "status": "met",
                "details": [
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                ],
                "max_points": 45
              },
              {
                "key": "manageable_file_sizes",
                "name": "Manageable file sizes",
                "detail": "13/831 source files over 60KB",
                "points": 54.1,
                "status": "partial",
                "details": [
                  {
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                    "params": {
                      "kb": 60,
                      "sampled": 831,
                      "oversized": 13
                    }
                  }
                ],
                "max_points": 55
              }
            ]
          },
          {
            "key": "ai_interfaces",
            "band": "excellent",
            "name": "Machine-readable interfaces",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "example_dirs": [
                "examples"
              ],
              "has_mcp_signal": true,
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                "protos/tensor.proto"
              ]
            },
            "components": [
              {
                "key": "api_schema_openapi_graphql_proto",
                "name": "API schema (OpenAPI/GraphQL/proto)",
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                "points": 40,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "protos/dna_model.proto, protos/dna_model_service.proto, protos/tensor.proto"
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                ],
                "max_points": 40
              },
              {
                "key": "mcp_server",
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                "points": 20,
                "status": "met",
                "details": [],
                "max_points": 20
              },
              {
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          }
        ],
        "description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
      }
    ],
    "metrics_version": "1.13.0"
  },
  "warnings": [
    "Could not fetch crates package 'biomcp-cli' from its registry"
  ],
  "report_type": "repository",
  "generated_at": "2026-07-21T20:25:15.227528Z",
  "schema_version": "0.23.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/g/genomoncology/biomcp.svg",
  "full_name": "genomoncology/biomcp",
  "license_state": "standard",
  "license_spdx": "MIT"
}

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Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.

Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v1.13.0, schema v0.23.0 — full methodology · metrics wiki.

How one result sits in the wider record: aggregate statistics — PyPI.