Public record
Software health reportschema 0.11.0 · metrics 2.10.0 · 2026-07-16 03:39 UTC

iowarp / clio-kit

Bringing AI practically to science!

PythonBSD-3-Clause★ 25 stars⑂ 25 forkssince Apr 2025View on GitHub ↗
KindLibraryMCP serverNetwork serviceWeb interfaceCommand-line toolhow this is determined
#ai4hpc#ai4science#hpc#hpc-ai#mcp#mcp-tools#clio#clio-kit

iowarp/clio-kit holds a health index of 78 out of 100, placing it in the Good band. It scores highest on Engineering Quality (83/100) and lowest on Security (44/100). It was last updated today. 2 contributors account for most of its recent work.

78
overall / 100
Good

Software health index

Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean, calibrated against the distribution of the public record so bands carry percentile meaning; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At Risk ceiling of 34.

78
Exceptional93-100The record's top tier (≈ top 5%); essentially all checked criteria met
Excellent80-92Strong across the board; minor gaps
Good65-79Healthy; gaps are limited and manageable
Moderate50-64Acceptable with notable gaps; review recommended
Weak35-49Material weaknesses across several areas
At Risk20-34Significant weaknesses; adoption warrants caution
Critical1-19Severe problems (abandoned, single-maintainer, no hygiene)
VitalityCommunity &AdoptionSustainability &GovernanceEngineeringQualitySecurityAI Readiness

Score profile

Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.

The weighted overall 67 is calibrated to 78 on the published index scale (record calibration 2026-08-02).

Ownership

IOWarpOrganization
18 followers13 public repossince Sep 2024

This repository is backed by an organization — shared, accountable stewardship that can outlive any single maintainer.

Package ecosystems

RegistryPackageVersionDownloads / moVersionsLast publishTags
PyPIclio-kit2.4.83,845200 days agoai-agentshdf5hpcllm-toolsmcpmodel-context-protocolparquetresearch-toolsscientific-computingslurm

Metrics by category

Vitality

Is the project alive — is code being written and are releases shipping?

80Excellent · 21% of overall

Development activity

74Good
How it's scored
36/36Push recency — last push 0 days ago
9.7/36Commit cadence — 14/52 weeks with commits
18/18Commit volume — 583 commits in the last year
10/10OpenSSF Scorecard: Maintained — 30 commit(s) and 2 issue activity found in the last 90 days -- score normalized to 10
Inputs used
commits_last_year583
human_commit_share—
days_since_last_push0
active_weeks_last_year14

Release discipline

90Excellent
How it's scored
27/27Ships releases — 23 releases published
36/36Release recency — latest release 0 days ago
27/27Release cadence — a release every ~0.6 days
0/10OpenSSF Scorecard: Signed-Releases — Project has not signed or included provenance with any releases.
Inputs used
releases_count23
latest_release_tagv2.4.8
releases_from_tagsno
days_since_latest_release0
mean_days_between_releases0.6

Community & Adoption

Does the project have users, downloads, attention, and a welcoming setup for contributors?

54Moderate · 17% of overall

Popularity & adoption

37Weak
How it's scored
22.4/60Stars — 25 stars
11.5/25Forks — 25 forks
2.7/15Watchers — 4 watchers
Inputs used
forks25
stars25
watchers4
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history

Community health

70Good
How it's scored
22.5/22.5README
22.5/22.5License — recognized license (BSD-3-Clause)
18/18CONTRIBUTING guide
0/13.5Code of conduct
0/7.2Issue template
0/6.3PR template
Inputs used
has_readmeyes
has_licenseyes
readme_badges—
has_contributingyes
has_issue_templateno
has_code_of_conductno
readme_badge_services—
has_pull_request_templateno

Ecosystem adoption (downloads)

60Moderate
How it's scored
47.8/80Monthly downloads — 3,845 downloads/month across pypi
0/20Registry dependents — not reported by this ecosystem
Inputs used
packagesclio-kit
dependents—
ecosystemspypi
total_downloads—
monthly_downloads3,845
unverified_packages_excluded—
Excluded from scoring (no data or not applicable): Registry dependents. Remaining weights renormalized.

Sustainability & Governance

Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?

70Good · 23% of overall

Maintainer resilience (bus factor)

64Moderate
How it's scored
25.2/54Bus factor — 2 contributor(s) cover half of all commits
15.5/22.5Commit distribution — top contributor authored 31% of commits
13.5/13.5Contributor breadth — 24 contributors
10/10OpenSSF Scorecard: Contributors — project has 5 contributing companies or organizations
Inputs used
bus_factor2
contributors_sampled24
top_contributor_share0.31

Issue & PR responsiveness

61Moderate
How it's scored
32.9/42Issue resolution — 78% of issues closed
20.1/30PR acceptance — 142/212 decided PRs merged
0/13Newcomer PR acceptance — no first-time contributor's PR decided in 30d
0/15OpenSSF Scorecard: Code-Review — Found 0/25 approved changesets -- score normalized to 0
Inputs used
merged_prs142
open_issues20
closed_issues72
prs_merged_7d—
prs_decided_7d—
prs_merged_30d—
prs_decided_30d—
issue_closed_ratio0.783
closed_unmerged_prs70
first_time_authors_30d—
first_time_prs_merged_30d—
first_time_prs_decided_30d—
Excluded from scoring (no data or not applicable): Newcomer PR acceptance. Remaining weights renormalized.

Ownership & stewardship

64Moderate
How it's scored
30/30Ownership backing — organization-owned
0/20Verified domain — verified-domain status not read for this organization
9.2/25Owner reach — 18 followers of iowarp
12/25Track record — 13 public repos, account ~1 yr old
Inputs used
followers18
owner_typeOrganization
is_verified—
owner_loginiowarp
public_repos13
account_age_days667
Excluded from scoring (no data or not applicable): Verified domain. Remaining weights renormalized.

Package maintenance

100Exceptional
How it's scored
25/25Published & resolvable — 1 package(s) on pypi
35/35Publish recency — latest publish 0 days ago
20/20Version history — 20 published versions
20/20Not deprecated — active, not deprecated or yanked
Inputs used
packagesclio-kit
ecosystemspypi
any_deprecatedno
min_days_since_publish0

Engineering Quality

Are baseline engineering and documentation practices in place?

83Excellent · 19% of overall

Engineering practices

88Excellent
How it's scored
24/24CI workflows — 5 workflow(s)
24/24Tests present
16/16Linter config
9.6/9.6Pre-commit hooks
0/6.4.editorconfig
14/20OpenSSF Scorecard: CI-Tests — 14 out of 19 merged PRs checked by a CI test -- score normalized to 7
Inputs used
has_ciyes
has_testsyes
has_editorconfigno
has_linter_configyes
has_precommit_configyes

Documentation

75Good
How it's scored
30/30README
0/25Documentation directory
15/15Documentation / homepage site — http://toolkit.iowarp.ai/
10/10Repository description
10/10Topics — 8 topics
10/10Wiki
Inputs used
topicsai4hpc, ai4science, hpc, hpc-ai, mcp, mcp-tools, clio, clio-kit
has_wikiyes
homepagehttp://toolkit.iowarp.ai/
docs_sitehttp://toolkit.iowarp.ai/
has_readmeyes
has_docs_dirno
has_descriptionyes

Security

Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?

44Weak · 16% of overall

Security posture

44Weak
How it's scored
7.5/7.5Binary-Artifacts — no binaries found in the repo
2.2/7.5Branch-Protection — branch protection is not maximal on development and all release branches
1.8/2.5CI-Tests — 14 out of 19 merged PRs checked by a CI test -- score normalized to 7
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
0/7.5Code-Review — Found 0/25 approved changesets -- score normalized to 0
2.5/2.5Contributors — project has 5 contributing companies or organizations
10/10Dangerous-Workflow — no dangerous workflow patterns detected
0/7.5Dependency-Update-Tool — no update tool detected
0/5Fuzzing — project is not fuzzed
2.5/2.5License — license file detected
7.5/7.5Maintained — 30 commit(s) and 2 issue activity found in the last 90 days -- score normalized to 10
5/5Packaging — packaging workflow detected
3/5Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 6
0/5SAST — SAST tool is not run on all commits -- score normalized to 0
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — Project has not signed or included provenance with any releases.
0/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
3.8/7.5Vulnerabilities — 5 existing vulnerabilities detected
Inputs used
sourceopenssf_scorecard
checks_evaluated18
scorecard_versionv5.5.0
checks_inconclusive0
scorecard_aggregate4.4

AI Readiness

How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight (4%): agent tooling is a real maintenance signal, but a repository with none can still reach 100/100.

64Moderate · 4% of overall

Agent context & guidance

75Good
How it's scored
45/45Agent instructions — CLAUDE.md
0/15Machine-readable docs (llms.txt)
0/40Legible commit history — no data
Inputs used
has_llms_txtno
llms_txt_url—
legible_history_share—
agent_instruction_filesCLAUDE.md
agent_instruction_max_bytes18,852
Excluded from scoring (no data or not applicable): Legible commit history. Remaining weights renormalized.

Verify loop (build / test / typecheck)

60Moderate
How it's scored
0/18One-command bootstrap
22/22Automated tests
11/11Lint / format config
0/11Static type checking
10/10Reproducible environment — lockfile
0/10Demonstrated agent practice — no data
0/8Automated maintenance — no data
6/10OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 6
Inputs used
has_nixno
has_testsyes
lockfilesuv.lock
has_dockerfileno
typed_languageno
bootstrap_files—
has_devcontainerno
has_linter_configyes
typecheck_configs—
agent_commit_share—
toolchain_manifests—
dependency_bot_commit_share—
Excluded from scoring (no data or not applicable): Demonstrated agent practice, Automated maintenance. Remaining weights renormalized.

Code legibility for models

54Moderate
How it's scored
0/45Type-checkable code — Python without a type-check config
54.3/55Manageable file sizes — 6/493 source files over 60KB
Inputs used
primary_languagePython
largest_source_bytes122,897
source_files_sampled493
oversized_source_files6

Machine-readable interfaces

60Moderate
How it's scored
0/40API schema (OpenAPI/GraphQL/proto)
20/20MCP server
40/40Runnable examples — examples
Inputs used
example_dirsexamples
has_mcp_signalyes
api_schema_files—
interfaces_expected_ofnetwork-service

Key facts

25GitHub stars
24contributors
583commits, last 12 months
0days since last push
23releases
2bus factor
20open issues
npm, PyPIpackage ecosystems

Data collection warnings

  • Could not fetch pypi package 'clio-agentic-search' from its registry

More detail

OpenSSF Scorecard 4.4 / 10
4.4aggregate

Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).Scorecard v5.5.0 · 2026-07-16 03:39 UTC

10Binary-Artifactsno binaries found in the repo
3Branch-Protectionbranch protection is not maximal on development and all release branches
7CI-Tests14 out of 19 merged PRs checked by a CI test -- score normalized to 7
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
0Code-ReviewFound 0/25 approved changesets -- score normalized to 0
10Contributorsproject has 5 contributing companies or organizations
10Dangerous-Workflowno dangerous workflow patterns detected
0Dependency-Update-Toolno update tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
10Maintained30 commit(s) and 2 issue activity found in the last 90 days -- score normalized to 10
10Packagingpackaging workflow detected
6Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 6
0SASTSAST tool is not run on all commits -- score normalized to 0
0Security-Policysecurity policy file not detected
0Signed-ReleasesProject has not signed or included provenance with any releases.
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
5Vulnerabilities5 existing vulnerabilities detected
Direct dependencies 13
RegistryPackageVersion constraintManifest
PyPIduckdb>=1.1.0,<2.0.0clio-agentic-search/pyproject.toml
PyPIfastapi>=0.139.0,<1.0.0clio-agentic-search/pyproject.toml
PyPIuvicorn>=0.30.0,<1.0.0clio-agentic-search/pyproject.toml
PyPItenacity>=8.2.0,<10.0.0clio-agentic-search/pyproject.toml
npm@docusaurus/core3.8.1clio-kit-website/package.json
npm@docusaurus/plugin-ideal-image^3.8.1clio-kit-website/package.json
npm@docusaurus/preset-classic3.8.1clio-kit-website/package.json
npm@mdx-js/react^3.0.0clio-kit-website/package.json
npmclsx^2.0.0clio-kit-website/package.json
npmprism-react-renderer^2.3.0clio-kit-website/package.json
npmreact^19.0.0clio-kit-website/package.json
npmreact-dom^19.0.0clio-kit-website/package.json
PyPIclick>=8.3.3pyproject.toml
All dependencies 379

Full resolved dependency set from the GitHub dependency graph: 17 direct and 362 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.

RegistryPackageVersionRelation
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npm@mdx-js/react^3.0.0direct
npmclsx^2.0.0direct
npmprism-react-renderer^2.3.0direct
npmreact^19.0.0direct
npmreact-dom^19.0.0direct
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PyPIpy-key-value-aio0.4.4indirect
PyPIpy-key-value-aio0.4.5indirect
PyPIpy-serializable2.1.0indirect
PyPIpyarrow23.0.1indirect
PyPIpyarrow25.0.0indirect
PyPIpyasn10.6.4indirect
PyPIpyasn1-modules0.4.2indirect
PyPIpycparser3.0indirect
PyPIpydantic2.12.5indirect
PyPIpydantic2.13.4indirect
PyPIpydantic-core2.41.5indirect
PyPIpydantic-core2.46.4indirect
PyPIpydantic-settings2.14.2indirect
PyPIpygments2.20.0indirect
PyPIpyjwt2.13.0indirect
PyPIpyogrio0.12.1indirect
PyPIpyparsing3.3.2indirect
PyPIpyperclip1.11.0indirect
PyPIpyproj3.7.1indirect
PyPIpyproj3.7.2indirect
PyPIpyproject-hooks1.2.0indirect
PyPIpytest9.0.3indirect
PyPIpytest9.1.1indirect
PyPIpytest-asyncio—indirect
PyPIpytest-asyncio1.3.0indirect
PyPIpytest-asyncio1.4.0indirect
PyPIpytest-benchmark5.2.3indirect
PyPIpytest-cov7.0.0indirect
PyPIpytest-cov7.1.0indirect
PyPIpytest-httpx0.36.0indirect
PyPIpytest-timeout2.4.0indirect
PyPIpython-dateutil2.9.0.post0indirect
PyPIpython-dotenv—indirect
PyPIpython-dotenv1.2.2indirect
PyPIpython-multipart0.0.32indirect
PyPIpytokens0.4.1indirect
PyPIpytz2025.2indirect
PyPIpytz2026.2indirect
PyPIpywin32311indirect
PyPIpywin32312indirect
PyPIpywin32-ctypes0.2.3indirect
PyPIpyyaml—indirect
PyPIpyyaml6.0.3indirect
PyPIrasterio1.4.4indirect
PyPIrasterio1.5.0indirect
PyPIreferencing0.37.0indirect
PyPIregex2026.2.19indirect
PyPIrequests2.34.2indirect
PyPIrich14.3.3indirect
PyPIrich15.0.0indirect
PyPIrich-rst1.3.2indirect
PyPIrich-rst2.0.1indirect
PyPIrich-rst2.1.0indirect
PyPIrpds-py0.30.0indirect
PyPIrpds-py2026.5.1indirect
PyPIrpds-py2026.6.3indirect
PyPIrsa4.9.1indirect
PyPIruff0.15.16indirect
PyPIruff0.15.2indirect
PyPIruff0.15.21indirect
PyPIsac-mcp1.0.0indirect
PyPIsafetensors0.7.0indirect
PyPIscientific-catalog-mcp1.0.0indirect
PyPIscikit-learn1.8.0indirect
PyPIscipy1.15.3indirect
PyPIscipy1.17.0indirect
PyPIscipy1.17.1indirect
PyPIseaborn0.13.2indirect
PyPIsecretstorage3.5.0indirect
PyPIseismic-mcp1.0.0indirect
PyPIsentence-transformers5.2.3indirect
PyPIsetuptools82.0.0indirect
PyPIshapely2.1.2indirect
PyPIshellingham1.5.4indirect
PyPIsix1.17.0indirect
PyPIslurm-mcp1.0.0indirect
PyPIsniffio1.3.1indirect
PyPIsortedcontainers2.4.0indirect
PyPIspack-mcp1.0.0indirect
PyPIsse-starlette3.2.0indirect
PyPIsse-starlette3.4.4indirect
PyPIsse-starlette3.4.5indirect
PyPIstarlette1.3.1indirect
PyPIsympy1.14.0indirect
PyPItables3.10.1indirect
PyPItables3.11.1indirect
PyPIterrain-mcp1.0.0indirect
PyPIthreadpoolctl3.6.0indirect
PyPItokenizers0.22.2indirect
PyPItomli2.4.0indirect
PyPItomli2.4.1indirect
PyPItomli-w1.2.0indirect
PyPItorch2.10.0indirect
PyPItqdm4.67.3indirect
PyPItransformers5.2.0indirect
PyPItriton3.6.0indirect
PyPItyper0.24.1indirect
PyPItyper-slim0.24.0indirect
PyPItypes-aiofiles25.1.0.20251011indirect
PyPItypes-psutil7.2.2.20260518indirect
PyPItypes-requests2.32.4.20260107indirect
PyPItyping-extensions4.15.0indirect
PyPItyping-extensions4.16.0indirect
PyPItyping-inspection0.4.2indirect
PyPItzdata2025.3indirect
PyPItzdata2026.2indirect
PyPItzdata2026.3indirect
PyPIuncalled-for0.3.2indirect
PyPIurllib32.7.0indirect
PyPIvirtualenv20.38.0indirect
PyPIwatchfiles1.1.1indirect
PyPIwatchfiles1.2.0indirect
PyPIwebsockets15.0.1indirect
PyPIwebsockets16.0indirect
PyPIwebsockets16.1indirect
PyPIxlrd2.0.2indirect
PyPIxyzservices2026.3.0indirect
PyPIyarl1.22.0indirect
PyPIzipp3.23.0indirect
PyPIzipp4.1.0indirect
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Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.

Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v2.10.0, schema v0.11.0 — full methodology · metrics wiki.

How one result sits in the wider record: aggregate statistics — PyPI.