Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 170,000+ scientists worldwide. 158 ready-to-use skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.
PythonMIT★ 32,259 stars⑂ 3,200 forkssince Oct 2025View on GitHub ↗
K-Dense-AI/scientific-agent-skills holds a health index of 72 out of 100, placing it in the Good band. It scores highest on Vitality (95/100) and lowest on Security (46/100). It was last updated 2 days ago. A single contributor accounts for most of its recent work.
72
overall / 100
Good
Software health index
Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At risk ceiling of 49. AI Readiness sits outside the overall score.
72
Excellent85-100Exemplary; meets essentially all checked criteria
Good70-84Healthy; minor gaps
Moderate50-69Acceptable with notable gaps; review recommended
At risk30-49Significant weaknesses; adoption warrants caution
Critical1-29Severe problems (abandoned, single-maintainer, no hygiene)
Score profile
Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.
How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score.
Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
Could not fetch pypi package 'scientific-agent-skills' from its registry
GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository
More detail
Star and fork history 0 ★ / 3,200 ⇿
0Stars
3,200Forks
22Releases
When each star and fork was added, collected from GitHub and bucketed by day. Cumulative growth sits directly above the daily additions it is made of, so the two read against each other: steady organic accretion looks nothing like an abrupt, short-lived burst. Where that difference is measurable, it is reported as growth authenticity.
Only the most recent history is shown — this repository exceeds the collection window, so the earliest history is not captured.
Major 0Minor 22Patch 0
OpenSSF Scorecard 4.6 / 10
4.6aggregate
Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).Scorecard v5.5.0 · 2026-07-31 15:08 UTC
The resolved dependency set could not be collected for this report: GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository
Raw JSON report machine-readable
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"body": "Audited every documented endpoint against the live APIs and fixed what\ncame back wrong, then added the tooling for the failures that cannot be\nfixed by documentation alone.\n\nThese APIs report failure with HTTP 200, which is the theme running\nthrough most of this change:\n\n- PMC eFetch returns a well-\n[…]\nres captured from real\nresponses. arxiv_error.xml is reconstructed from a verified response\nrather than saved from one, and says so -- arXiv penalizes repeated\nmalformed requests and stayed throttled.",
"is_bot": false,
"headline": "Update paper-lookup to 2.0",
"author_name": "Timothy Kassis",
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"body": "Completes the three GitHub Community Standards items the repository was\nmissing: a Code of Conduct, issue templates, and a pull request template.\n\n- CODE_OF_CONDUCT.md: Contributor Covenant 2.1, with contact@k-dense.ai as\n the enforcement contact and a pointer to SECURITY.md for vulnerabilities.\n- \n[…]\n.md: mirrors the Pull Request Checklist in\n CONTRIBUTING.md so contributors see the skill-format, validation, and\n safety requirements before submitting.\n- CONTRIBUTING.md: link the Code of Conduct.",
"is_bot": false,
"headline": "Add community health files (#218)",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
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{
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"body": null,
"is_bot": false,
"headline": "Update README",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-28T00:00:02Z",
"body_truncated": false,
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{
"oid": "dbe942214d9725d8d327bb566fa726ffd241ddc8",
"body": "Introduces a skill for analyzing genomic data, including features for variant calling, mutation analysis, and lineage tracking. The implementation includes several command-line interfaces for querying genomic databases and generating reports. Updates documentation to reflect the new skill and its functionalities, ensuring users can effectively utilize the new features.",
"is_bot": false,
"headline": "Add new skill for genomic data analysis",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-27T23:54:06Z",
"body_truncated": false,
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"body": null,
"is_bot": false,
"headline": "Add bulk RNA-seq diagram to documentation",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
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},
{
"oid": "ce01a273b3f0af614c05e9cc29b1c4eac5520f6a",
"body": null,
"is_bot": false,
"headline": "More diagrams for skills",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-27T23:40:44Z",
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{
"oid": "11c4e1e516da42b7f3ae88c252b2c744ab6702f7",
"body": null,
"is_bot": false,
"headline": "Add zarr image",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-27T23:37:07Z",
"body_truncated": false,
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{
"oid": "effadea79fd464b8d9aa412e8bc2952d29d3a539",
"body": null,
"is_bot": false,
"headline": "Add skill images",
"author_name": "Timothy Kassis",
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{
"oid": "844f4a35ccaa6a1a6ebeae4ddf0f56901b2f769e",
"body": "New skill for bench analytical scientists in regulated labs: planning,\nevaluating, and documenting validation, verification, and transfer of\nanalytical procedures under whichever framework governs.\n\nFrameworks. ICH Q2(R2) and Q14 and ICH M10 are encoded directly from their\nopenly licensed text, read\n[…]\n technical reviewer, quality unit, or regulator.\n\nAlso adds 111 tests in tests/analytical-method-validation, a docs/skills.md\nentry, examples.md Example 36b, and updates the README skill count to 156.",
"is_bot": false,
"headline": "Add analytical-method-validation skill",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-27T23:34:28Z",
"body_truncated": true,
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},
{
"oid": "e608baad6e5524ba41e1f7a358259e091f874e4d",
"body": "Query live pathogen genomic surveillance through the GenSpectrum LAPIS\nAPI: which viral lineages are circulating now, how fast they are\ngrowing, and what mutations they carry. Covers 15 instances spanning\nSARS-CoV-2, influenza A (including H5N1 and the seasonal H3N2/H1N1pdm\nclades), and the Pathople\n[…]\n own scale reports an interval narrower than binomial sampling\nallows.\n\n117 tests, including live checks gated behind LAPIS_LIVE_TESTS=1 that\ndocument the API behaviour the scripts were built against.",
"is_bot": false,
"headline": "Add pathogen-variant-surveillance skill",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-27T22:40:33Z",
"body_truncated": true,
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{
"oid": "5a9c275418e8f1fd020b42ccc1f910ecd65d180b",
"body": "An unanchored \"scripts/\" matches at any depth, including\nskills/<name>/scripts/, so every new skill's bundled tooling was\nsilently untrackable. Existing skills were unaffected only because\ntheir files were already tracked.\n\nThe entry sits under \"Local agent tooling\" alongside .claude/ and\n.agents/, so root-only was the intent.",
"is_bot": false,
"headline": "Anchor the scripts/ gitignore pattern to the repo root",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-27T22:40:05Z",
"body_truncated": false,
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},
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"oid": "81e316bc89f7fda176b092d2bceb959204710b0a",
"body": null,
"is_bot": true,
"headline": "chore: update security scan report [skip ci]",
"author_name": "github-actions[bot]",
"author_login": "github-actions[bot]",
"committed_at": "2026-07-27T10:39:03Z",
"body_truncated": false,
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},
{
"oid": "051f93f59fc64cd877d66554d03429f5c486b66e",
"body": "…tion of new skills and version bump to 2.57.0. The README now highlights 154 skills, including the new Ontology Term Resolution and Genomic Coordinates skills, and provides updated examples for interdisciplinary workflows. The skills documentation has been expanded to include detailed descriptions of the new skills and their functionalities.",
"is_bot": false,
"headline": "Update README, examples, and skills documentation to reflect the addi…",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-27T01:14:01Z",
"body_truncated": false,
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},
{
"oid": "6d22863f8d8666a32f2bcd1db1169de9e912c8ab",
"body": "Fold the ISO 13485 skill into an umbrella standards-readiness skill so a\nsingle skill covers several standards instead of one skill per standard\ncompeting for selection on every compliance-adjacent prompt.\n\nSKILL.md becomes a router: boundary, ISO/IEC copyright rules, current\nbaseline, assurance-lan\n[…]\n and 23 subtests pass directly and under run_all.py --isolated;\nsecurity scan clean (1 LOW, no HIGH+). The LOW finding is a pre-existing\nunreachable assert in _common.py, verified rather than \"fixed\".",
"is_bot": false,
"headline": "Replace iso-13485-certification with iso-standards-readiness",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T23:26:52Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "f8eb840d1138d589c1f9d83a38b5846bd2d1d39e",
"body": "Link the 14 K-Dense blog posts most relevant to users of these skills,\ngrouped into getting started, skill benchmarks and deep dives, security\nand safe deployment, and complementary open-source projects. Benchmark\nentries cross-link to the corresponding skill directory.",
"is_bot": false,
"headline": "Add From the Blog section to README",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T23:19:12Z",
"body_truncated": false,
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{
"oid": "58746dc785d2c8469dd4736e4e27a3d0835d2760",
"body": "…port",
"is_bot": false,
"headline": "Add pytest as a dependency in pyproject.toml for improved testing sup…",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T22:52:13Z",
"body_truncated": false,
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},
{
"oid": "2598479c83f9ff9e561ec92e767b42cef26b398c",
"body": null,
"is_bot": false,
"headline": "Bump version to 2.57.0",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T22:51:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ef1b2d8026bdccccf8a72f22bf3f2ea9eda76df4",
"body": "Refresh every reference against https://pi.dev/docs/latest and the four\necosystem package pages, cross-checked with the published npm READMEs.\n\nNew reference pages (docs added them; the site nav does not surface them):\n- environment-variables.md: PI_* process config, the PI_CODING_AGENT child\n mark\n[…]\nrrupted in earlier versions:\nthe Git Bash path in windows.md, the shellCommandPrefix JSON in\nshell-aliases.md, and the CSI-u sequences in tmux.md and terminal-setup.md.\n\nBumps metadata.version to 1.2.",
"is_bot": false,
"headline": "Update pi-agent skill to latest Pi docs",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T22:50:24Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "3f530cf49e6336249eb4a6007dfea56c4bc538f1",
"body": "The skill called /api/v1/chat/completions with modalities: [\"image\",\"text\"],\nwhich reaches only 11 models. Both FLUX models the skill documented as options\nare not among them, so those paths returned 404 \"No endpoints found that\nsupport the requested output modalities\". Move to POST /api/v1/images, \n[…]\nfree tests.\n\nVerified against the live API: default model at 16:9, flux.2-pro with --seed\nand --output-format, and an -i edit all produce correct images; --list-models\nreturns 38 models without a key.",
"is_bot": false,
"headline": "Update generate-image for the OpenRouter Image API",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T22:48:58Z",
"body_truncated": true,
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},
{
"oid": "ce67928122a6163c7829aba72323a966e4c6ac1b",
"body": "Covers the conventions that produce silent off-by-one and wrong-assembly\nerrors: 0-based half-open vs 1-based inclusive across BED/GFF/VCF/SAM and\nfriends, VCF indel anchoring and left-alignment, GRCh37 vs hg19 vs GRCh38\nvs T2T, and genomic-to-transcript-to-CDS-to-protein positions.\n\nFour standard-l\n[…]\n NCBI\nGRCh37.p13 assembly report; region-string semantics follow the samtools\nmanual, including that REF:START runs to the end of the contig and that\nGRCh38 HLA contig names need htslib brace quoting.",
"is_bot": false,
"headline": "Add genomic-coordinates skill",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T22:33:36Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "cca1e05ddff5aa213b3638bd9e46e2f050027ff6",
"body": "Metrology skill covering units and measurement uncertainty, with six\nstandard-library-first CLIs that run offline:\n\n- propagate_uncertainty.py: GUM framework and Monte Carlo on the same\n model, with the JCGM 101 clause 8 linearization check\n- uncertainty_budget.py: components stated the way certifi\n[…]\nher than from literals.\n\nTests in tests/uncertainty-and-units/ (85 cases) verify the metrology\nagainst published values and assert every bundled script passes the\nskill's own auditor with no findings.",
"is_bot": false,
"headline": "Add uncertainty-and-units skill under skills/uncertainty-and-units",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T22:08:29Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "87b598a51a8dfcb1952ca3aceffa9d79904ebd02",
"body": "Resolve free-text scientific labels to ontology term IDs and validate\nexisting CURIEs against the EBI Ontology Lookup Service (OLS4). Covers the\nconcepts whose identifiers are routinely invented rather than looked up:\ntissue, cell type, disease, phenotype, assay, chemical, organism, sex, and\ndevelop\n[…]\n\n cell under anatomical structure\n\nTests: 59 in tests/ontology-term-resolution, 53 offline with stubbed network\nplus 6 live smoke tests gated behind OLS_LIVE_TESTS=1 that pin the API\nbehaviour above.",
"is_bot": false,
"headline": "Add ontology-term-resolution skill",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T21:45:44Z",
"body_truncated": true,
"is_coding_agent": false
},
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"oid": "3036316a8a3344b14da8229d194802e19ac760e5",
"body": null,
"is_bot": false,
"headline": "Update version numberl to 2.56.0",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T20:59:44Z",
"body_truncated": false,
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{
"oid": "b80fcda721ea8d55fc36a303dfffe0c7b2501cce",
"body": "- Updated AGENTS.md and CONTRIBUTING.md to clarify the use of isolated environments for each skill, addressing dependency conflicts and ensuring proper testing setups.\n- Modified tests/run_all.py to implement the `--isolated` flag, allowing for the creation of throwaway environments per skill based on `tests/skill-requirements.toml`.\n- Improved handling of unavailable packages and added detailed instructions for contributors on managing skill dependencies.",
"is_bot": false,
"headline": "Enhance skill environment management and documentation",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T20:58:18Z",
"body_truncated": false,
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},
{
"oid": "cd879d8052def84157d073c1a0d11edb4984de95",
"body": "- Updated AGENTS.md to clarify the use of the Cisco AI Defense Skill Scanner for security scanning of new or changed skills, including details on rule IDs and CLI usage.\n- Adjusted pyproject.toml to pin the cisco-ai-skill-scanner dependency to version 2.0.12, ensuring the latest features and fixes are utilized.",
"is_bot": false,
"headline": "Enhance security scanning documentation and update dependencies",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T17:15:02Z",
"body_truncated": false,
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{
"oid": "dde19062f391a190a4eea5692219950e774889bc",
"body": "* add OpenPIV skill under skills/openpiv\n\n* Fix spec violations and unverified APIs in the OpenPIV skill\n\nVerified everything against openpiv 0.25.4 in a clean venv; all 14 SKILL.md\nsnippets and both reference snippets now execute, and runner.py/run_example.py\nrun end to end on OpenPIV's bundled tes\n[…]\noded relative path.\n Rewritten as a self-contained smoke test on OpenPIV's bundled image pair.\n\nSecurity scan: SAFE, 0 findings.\n\n---------\n\nCo-authored-by: Timothy Kassis <timothy.kassis@k-dense.ai>",
"is_bot": false,
"headline": "Add OpenPIV skill under skills/openpiv (#216)",
"author_name": "Alex Liberzon",
"author_login": "alexlib",
"committed_at": "2026-07-26T17:08:21Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "2f2022de186dbf73f4c3b6e37b9856fa5cb66db4",
"body": "- Enhanced AGENTS.md to clarify skill scope and directory structure, providing clearer guidelines for skill creation and updates.\n- Updated CONTRIBUTING.md to emphasize the separation of tests from skill directories, ensuring better organization and clarity for contributors.\n- Revised .gitignore to \n[…]\nt_cache, improving project cleanliness.\n- Adjusted pyproject.toml to configure pytest for better test path management.\n- Incremented version number in SKILL.md for autoskill to reflect recent updates.",
"is_bot": false,
"headline": "Update documentation and improve test structure for autoskill",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T16:54:14Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "8cb0f52a35d09f9c44af85b03a31291e493a0910",
"body": "- Introduced a comprehensive test suite for the autoskill project, including tests for backends, CLI commands, and various skill functionalities.\n- Added smoke tests for LM Studio integration to validate real-time interactions.\n- Implemented tests for session clustering and event fetching to ensure \n[…]\ned redaction tests to verify sensitive information is properly handled in outputs.\n- Created end-to-end tests to simulate the full autoskill pipeline, ensuring all components work together seamlessly.",
"is_bot": false,
"headline": "Add initial test suite for autoskill functionality",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T16:54:05Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "b085e116c5de7d244fccbd666f1a9e73257999e4",
"body": "- Revised the metadata format in multiple SKILL.md files to use block mapping instead of single-line JSON, enhancing YAML compatibility.\n- Added a new entry for local agent tooling in .gitignore to exclude the .claude directory, improving project cleanliness.\n- Removed outdated entries for AGENTS.md and CLAUDE.md from .gitignore, streamlining ignored files.",
"is_bot": false,
"headline": "Update skill metadata formatting and improve .gitignore entries",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T16:29:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cb8378024289106fa47ad72d7f6348f14b4c8f90",
"body": "- Generated a new security scan report with detailed findings, including 888 total findings and 33 critical issues.\n- Revised the `soffice.py` scripts across multiple skills to implement a secure environment variable forwarding mechanism, minimizing the risk of exposing sensitive information to subp\n[…]\nrtance of user consent when executing code from external repositories.\n- Improved the command submission process in `run_pacsomatic.py` to ensure safer execution of scripts across different executors.",
"is_bot": false,
"headline": "Update security report and enhance subprocess environment handling",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T15:48:30Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "489de4ce4ce908436637b9a52cd6be9480c2ae75",
"body": "- Clarified the security scan report generation process in README.md, emphasizing the publication of results.\n- Revised `scan_skills.py` documentation to reflect changes in report generation and the removal of the validate_report.py script.\n- Updated SECURITY.md to specify the scope of vulnerabilities and improved clarity on the report's purpose and limitations.\n- Adjusted the security scan workflow to remove the validation step, streamlining the process while ensuring accurate reporting.",
"is_bot": false,
"headline": "Update security documentation and scanning process",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T15:16:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b01cff4cda1b14b75a3ca111089f3c6b722694d0",
"body": "…curity scan process. This change simplifies the codebase and eliminates redundancy in validation checks, streamlining the overall workflow.",
"is_bot": false,
"headline": "Remove validate_report.py script as it is no longer needed for the se…",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T15:16:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a1b84fb2235e3b24d4af08b0b118414ff3d95d41",
"body": "- Updated the skill description to include support for Word templates (.dotx) alongside .docx files, broadening the skill's applicability.\n- Improved the comment script to accept both unpacked directories and .docx/.dotx files directly, streamlining the user experience.\n- Added automatic comment ID \n[…]\nunpack.py scripts, consolidating functionality into existing scripts for better maintainability.\n- Enhanced validation and error handling in the validate.py script, ensuring better feedback for users.",
"is_bot": false,
"headline": "feat(docx): enhance DOCX skill and comment script functionality",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T03:37:05Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "f5a0bbcf6cdb2bef29607ed571c12918b1caa429",
"body": "…nvironment\n\n- Added guidance on treating metadata as untrusted in SKILL.md, emphasizing safe command construction.\n- Updated extract_metadata.py to sanitize the year field, ensuring only digits are retained for filenames and shell arguments.\n- Introduced a build_subprocess_env function in multiple \n[…]\nnment variables to subprocesses, minimizing exposure of unrelated secrets.\n- Improved documentation on where credentials are sent in SKILL.md, clarifying the purpose of each environment variable used.",
"is_bot": false,
"headline": "feat(citation-management): enhance metadata handling and subprocess e…",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-26T03:19:57Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "665663cac17c7cbfa71a6a3b2dad95db494996c1",
"body": "Scans were sequential at ~29s per skill: 72 minutes for 150 skills against a\n120-minute workflow timeout. Each scan is blocked on LLM network I/O rather\nthan local CPU, so the work parallelizes.\n\n- Run skills through a thread pool (SKILL_SCAN_WORKERS, default 8), building\n one scanner per worker th\n[…]\nic-intelligence/SKILL.md, whose unquoted description\ncontained a colon-space that made its YAML frontmatter invalid. The loader had\nbeen rejecting it silently, so every scan covered 149 of 150 skills.",
"is_bot": false,
"headline": "perf(security-scan): scan concurrently and reuse unchanged results",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-25T22:11:47Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "d77f819637d8631c0f38f2f75c9dba013770da8f",
"body": "- Enhanced the README to clarify the publication of security scan results to a dedicated markdown file.\n- Modified `scan_skills.py` to generate both a human-readable report and a machine-readable JSON report, ensuring consistency checks before CI publishing.\n- Updated the GitHub Actions workflow to \n[…]\n commit the new reports, replacing the previous SECURITY.md approach with separate report files.\n\nThis change improves the clarity and accessibility of security information for users and contributors.",
"is_bot": false,
"headline": "Update security scanning process and documentation",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-25T21:55:40Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "bf383691e2a146c12f12cccc018fa706d08244de",
"body": "feat(citation-management): document Zotero integration via pyzotero skill",
"is_bot": false,
"headline": "Merge pull request #215 from K-Dense-AI/feat/citation-management-zotero",
"author_name": "Timothy Kassis",
"author_login": "TKassis",
"committed_at": "2026-07-25T21:26:19Z",
"body_truncated": false,
"is_coding_agent": false
},
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"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
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},
"warnings": [
"Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token",
"Could not fetch pypi package 'scientific-agent-skills' from its registry",
"GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository"
],
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Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.
Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v1.14.0, schema v0.27.0 — full methodology · metrics wiki.
