npm
GMOD/ucsc-hub-js
read and write UCSC track and assembly hub files in node or the browser
MITSep 15, 2026 · metrics 2.10.0
All tags
Catalogue tag
#genomics
Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.
68 records
PyPI · npm
haqaliz/contig
An agentic bioinformatics analyst: it runs the analysis on your own compute, self-heals failures, verifies the output, and returns a reproducible result.
Apache-2.0Oct 21, 2026 · metrics 2.10.0
crates.io · PyPI
kcleal/superintervals
Fast interval intersection library
MITOct 6, 2026 · metrics 2.10.0
RubyGems
kojix2/ruby-htslib
HTSlib bindings for Ruby
MITSep 15, 2026 · metrics 2.10.0
PyPI
kcleal/dysgu
Toolkit for calling structural variants using short or long reads
MITSep 13, 2026 · metrics 2.10.0
crates.io
COMBINE-lab/piscem
Mapping sequencing data to De Bruijn graphs, fast
BSD-3-ClauseOct 20, 2026 · metrics 2.10.0
PyPI
igvteam/igv-reports
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
MITSep 13, 2026 · metrics 2.10.0
crates.io
ngless-toolkit/ngless
NGLess: NGS with less work
Custom licenseOct 18, 2026 · metrics 2.10.0
npm
theosanderson/gensplore
Lightweight genome browser for microbial genomes
No licenseOct 18, 2026 · metrics 2.10.0
crates.io
ArcInstitute/binseq
A high efficiency binary format for sequencing data
No licenseSep 12, 2026 · metrics 2.10.0
crates.io
fulcrumgenomics/bgzf
BGZF compression library in Rust
Custom licenseSep 18, 2026 · metrics 2.10.0
PyPI
iskandr/osteosarc
Cancer genomics data from osteosarc.com
Apache-2.0Sep 26, 2026 · metrics 2.10.0
npm
GMOD/hic
Read .hic contact matrix files in node or the browser
Custom licenseSep 21, 2026 · metrics 2.10.0
—
brentp/somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
MITSep 12, 2026 · metrics 2.10.0
RubyGems
kojix2/ruby-minimap2
Powerful long read aligner for Ruby
MITOct 19, 2026 · metrics 2.10.0
crates.io
pangenome/seqwish
alignment to variation graph inducer
MITSep 19, 2026 · metrics 2.10.0
PyPI
tanaylab/pymisha
Genomic data analysis suite in python
MITAug 25, 2026 · metrics 2.10.0
PyPI
JLSteenwyk/orthosnap
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
MITSep 10, 2026 · metrics 2.10.0
npm
biowasm/aioli
Framework for building fast genomics web tools with WebAssembly and WebWorkers
MITSep 13, 2026 · metrics 2.10.0
npm
GMOD/gff-js
parse and format streams of GFF3, for node or webpack
MITSep 15, 2026 · metrics 2.10.0
—
TobyBaril/EarlGrey
Earl Grey: A fully automated TE curation and annotation pipeline
Custom licenseOct 19, 2026 · metrics 2.10.0
PyPI
kmaneesh/biopython-mcp
MCP interface to BioPython
MITSep 8, 2026 · metrics 2.10.0
PyPI
y9c/coralsnake
No repository description published.
No licenseOct 6, 2026 · metrics 2.10.0
PyPI
qby1613527176-cmd/tbtools-cli
No repository description published.
MITOct 12, 2026 · metrics 2.10.0
—
MPUSP/snakemake-simple-mapping
A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.
MITSep 14, 2026 · metrics 2.10.0
crates.io
noamteyssier/binseq
No repository description published.
No licenseOct 3, 2026 · metrics 2.10.0
npm
neuhausi/canvasxpress-node
Node application to run CanvasXpress
Custom licenseSep 9, 2026 · metrics 2.10.0
PyPI
pyranges/pyrle
Numerical Run Length Encoding and Arithmetic in Cython
MITSep 15, 2026 · metrics 2.10.0
npm
pentamorfico/hoodini-viz
GPU-powered interactive gene neighborhood visualization with deck.gl and React
MITOct 18, 2026 · metrics 2.10.0
PyPI
liguowang/CrossMap
CrossMap is a python program to lift over genome coordinates from one genome version to another.
Custom licenseSep 20, 2026 · metrics 2.10.0