PyPI
gbouras13/pharokka
Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.
MITSep 10, 2026 · metrics 2.10.0
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Catalogue tag
#metagenomics
Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.
11 records
PyPI
BigDataBiology/SemiBin
SemiBin: metagenomics binning with self-supervised deep learning
MITSep 17, 2026 · metrics 2.10.0
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EBI-Metagenomics/assembly-analysis-pipeline
MGnify Assembly Analysis Pipeline
Apache-2.0Sep 11, 2026 · metrics 2.10.0
PyPI
EBI-Metagenomics/mgnify-pipelines-toolkit
This Python package contains a collection of scripts and tools for including in MGnify pipelines
Apache-2.0Sep 10, 2026 · metrics 2.10.0
PyPI
rhysnewell/aviary
A hybrid assembly and MAG recovery pipeline (and more!)
GPL-3.0Sep 9, 2026 · metrics 2.10.0
PyPI
EBI-Metagenomics/genome_uploader
Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
Apache-2.0Sep 9, 2026 · metrics 2.10.0
crates.io
ngless-toolkit/ngless
NGLess: NGS with less work
Custom licenseOct 18, 2026 · metrics 2.10.0
PyPI
geronimp/enrichM
Toolbox for comparative genomics of MAGs
GPL-3.0Oct 18, 2026 · metrics 2.10.0
PyPI
khyox/recentrifuge
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
Custom licenseOct 15, 2026 · metrics 2.10.0
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beiko-lab/arete
AMR/VF LGT focused bacterial genomics analysis workflow
MITSep 10, 2026 · metrics 2.10.0
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jolespin/veba
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
AGPL-3.0Sep 14, 2026 · metrics 2.10.0