All tags
Catalogue tag

#metagenomics

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

6 records
Tagged “metagenomics”Ranked by health index
PyPI
68Moderatehealth index
EBI-Metagenomics/genome_uploader
Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
Python★ 24Jul 17, 2026
Apache-2.0Jul 17, 2026 · metrics 1.13.0
PyPI
68Moderatehealth index
EBi-Metagenomics/mgnify-pipelines-toolkit
This Python package contains a collection of scripts and tools for including in MGnify pipelines
Python★ 1↓ 1,147/moJul 17, 2026
Apache-2.0Jul 17, 2026 · metrics 1.13.0
PyPI
68Moderatehealth index
gbouras13/pharokka
Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.
Python★ 218↓ 573/moJul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
67Moderatehealth index
rhysnewell/aviary
A hybrid assembly and MAG recovery pipeline (and more!)
Python · HTML★ 109↓ 205/moJul 17, 2026
GPL-3.0Jul 17, 2026 · metrics 1.13.0
49At riskhealth index
beiko-lab/arete
AMR/VF LGT focused bacterial genomics analysis workflow
Python · Nextflow★ 28Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0