PyPI
broadinstitute/viral-ngs
viral-ngs: command line tools and wrappers for processing raw viral genomic data
MITAug 17, 2026 · metrics 2.10.0
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#ngs
Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.
6 records
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samtools/htslib
C library for high-throughput sequencing data formats
Custom licenseAug 22, 2026 · metrics 2.10.0
PyPI
ablab/IsoQuant
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Custom licenseJul 17, 2026 · metrics 2.10.0
PyPI
pysam-developers/pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
MITJul 21, 2026 · metrics 2.10.0
PyPI
biocore/SORTMeRNA
SortMeRNA: next-generation sequence filtering and alignment tool
GPL-3.0Jul 16, 2026 · metrics 2.10.0
PyPI
edgardomortiz/Captus
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
GPL-3.0Jul 28, 2026 · metrics 2.10.0