npm · PyPI
galaxyproject/galaxy
Data intensive science for everyone.
Custom licenseOct 18, 2026 · metrics 2.10.0
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#ngs
Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.
12 records
PyPI
broadinstitute/viral-ngs
viral-ngs: command line tools and wrappers for processing raw viral genomic data
MITOct 19, 2026 · metrics 2.10.0
PyPI
pysam-developers/pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
MITSep 12, 2026 · metrics 2.10.0
PyPI
ablab/IsoQuant
A universal toolkit for upstream processing of long RNA reads
Custom licenseSep 10, 2026 · metrics 2.10.0
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samtools/htslib
C library for high-throughput sequencing data formats
Custom licenseOct 20, 2026 · metrics 2.10.0
RubyGems
telatin/bamtocov
🏔 coverage extraction from BAM/CRAM files, supporting targets 📊
MITOct 15, 2026 · metrics 2.10.0
crates.io
ngless-toolkit/ngless
NGLess: NGS with less work
Custom licenseOct 18, 2026 · metrics 2.10.0
PyPI
sortmerna/sortmerna
SortMeRNA: next-generation sequence filtering and alignment tool
GPL-3.0Sep 9, 2026 · metrics 2.10.0
PyPI
sequana/variant_calling
No repository description published.
BSD-3-ClauseSep 20, 2026 · metrics 2.10.0
PyPI
khyox/recentrifuge
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
Custom licenseOct 15, 2026 · metrics 2.10.0
PyPI
edgardomortiz/Captus
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
GPL-3.0Sep 14, 2026 · metrics 2.10.0
PyPI
antigenomics/arda
High-throughput mapping and domain partitioning of antigen receptor sequences
GPL-3.0Sep 27, 2026 · metrics 2.10.0