#ngs

viral-ngs: command line tools and wrappers for processing raw viral genomic data

C library for high-throughput sequencing data formats

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.