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#variant-calling

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

6 records
Tagged “variant-calling”Ranked by health index
PyPI
88Excellenthealth index
broadinstitute/viral-ngs
viral-ngs: command line tools and wrappers for processing raw viral genomic data
Python★ 198Aug 17, 2026
MITAug 17, 2026 · metrics 2.10.0
PyPI · npm
65Goodhealth index
haqaliz/contig
An agentic bioinformatics analyst: it runs the analysis on your own compute, self-heals failures, verifies the output, and returns a reproducible result.
Python · TypeScript★ 2Sep 5, 2026
Apache-2.0Sep 5, 2026 · metrics 2.10.0
PyPI
65Goodhealth index
kcleal/dysgu
Toolkit for calling structural variants using short or long reads
Cython · Python · C++★ 115↓ 1,527/moJul 23, 2026
MITJul 23, 2026 · metrics 2.10.0
51Moderatehealth index
MPUSP/snakemake-simple-mapping
A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.
Python★ 1Jul 27, 2026
MITJul 27, 2026 · metrics 2.10.0
PyPI · npm
36Weakhealth index
smartsbio/smarts-bio-jupyterlab
No repository description published.
TypeScript★ 1Jul 17, 2026
MITJul 17, 2026 · metrics 2.10.0
29At Riskhealth index
PacificBiosciences/ccs
CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
Mixed★ 127Jul 26, 2026
BSD-3-Clause-ClearJul 26, 2026 · metrics 2.10.0