Публічний реєстрПомірний
Звіт про здоров'я програмного забезпеченнясхема 0.27.0 · метрики 1.13.0 · 2026-07-26 00:54 UTC
Binomica-Labs / SpliceCraft
Terminal-based plasmid map viewer, sequence editor, and cloning/mutagenesis workbench in pure Python
Binomica-Labs/SpliceCraft має індекс здоров’я 64 зі 100, що відповідає смузі «Помірний». Найвищий показник — Vitality (82/100), найнижчий — AI Readiness (44/100). Останнє оновлення — сьогодні. Більшість нещодавньої роботи виконує один учасник.
64
загалом / 100Індекс здоров'я програмного забезпечення
Метрики згруповано у зважені категорії на шкалі 1–100. Загальна оцінка починається як їхнє середнє; коли публічні дані активують Політику юрисдикцій високого ризику, рейтинг коригується й отримує верхню межу 49 («Під ризиком»). Готовність до ШІ не входить до індексу.
64
Відмінний85-100Зразковий; відповідає практично всім перевіреним критеріям
Добрий70-84Здоровий; незначні прогалини
Помірний50-69Прийнятний, але з помітними прогалинами; рекомендовано перевірку
У зоні ризику30-49Суттєві слабкі місця; впровадження потребує обережності
Критичний1-29Серйозні проблеми (покинутий, єдиний мейнтейнер, без базової гігієни)
Профіль оцінок
Кожна вісь — окрема категорія. Форма важить більше, ніж середнє: здоровий об'єкт заповнює всю фігуру, тоді як профіль із піками та провалами означає, що сила в одному вимірі маскує ризик в іншому.
Власність
Binomica LabsОрганізація
107 підписників9 публічних репозиторіївз вер. 2014 р.
За цим репозиторієм стоїть організація — спільна, підзвітна опіка, здатна пережити будь-якого окремого мейнтейнера.
Пакетні екосистеми
| Реєстр | Пакет | Версія | Завантажень / міс | Версії | Остання публікація | Теги |
|---|---|---|---|---|---|---|
| PyPI | splicecraft | 1.2.39 | 11 687 | 293 | 0 днів тому | bioinformaticscloninggenbankgolden-braidmolecular-biologyplasmidprimer3terminaltui |
Метрики за категоріями
Життєздатність
Чи живий проєкт — чи пишеться код і чи виходять релізи?
82
Активність розробки
76Добрий
Як обчислюється оцінка
| 36/36 | Свіжість push — останній push 0 дн. тому |
| 12.5/36 | Ритм комітів — 18/52 тижнів із комітами |
| 18/18 | Обсяг комітів — 657 комітів за останній рік |
| 10/10 | OpenSSF Scorecard: Maintained — 30 commit(s) and 13 issue activity found in the last 90 days -- score normalized to 10 |
Використані вхідні дані
| commits_last_year | 657 |
| human_commit_share | 1 |
| days_since_last_push | 0 |
| active_weeks_last_year | 18 |
Дисципліна релізів
90Відмінний
Як обчислюється оцінка
| 27/27 | Випускає релізи — опубліковано 100 релізів |
| 36/36 | Свіжість релізів — останній реліз 0 дн. тому |
| 27/27 | Ритм релізів — реліз кожні ~0,5 дн. |
| 0/10 | OpenSSF Scorecard: Signed-Releases — Project has not signed or included provenance with any releases. |
Використані вхідні дані
| releases_count | 100 |
| latest_release_tag | v1.2.39 |
| releases_from_tags | ні |
| days_since_latest_release | 0 |
| mean_days_between_releases | 0,5 |
Спільнота та впровадження
Чи має проєкт користувачів, завантаження, увагу та влаштовані умови для контриб’юторів?
60
Популярність і впровадження
47У зоні ризику
Як обчислюється оцінка
| 36.8/60 | Зірки — 186 зірок |
| 8.7/25 | Форки — 12 форків |
| 1.7/15 | Спостерігачі — 3 спостерігачів |
Використані вхідні дані
| forks | 12 |
| stars | 186 |
| watchers | 3 |
| growth_state | unverified |
| growth_factor_pct | 100 |
| growth_unverified_reason | no_history |
Здоров'я спільноти
70Добрий
Як обчислюється оцінка
| 22.5/22.5 | README |
| 22.5/22.5 | Ліцензія — визнана ліцензія (MIT) |
| 18/18 | Настанови CONTRIBUTING |
| 0/13.5 | Кодекс поведінки |
| 0/7.2 | Шаблон issue |
| 0/6.3 | Шаблон PR |
Використані вхідні дані
| has_readme | так |
| has_license | так |
| has_contributing | так |
| has_issue_template | ні |
| has_code_of_conduct | ні |
| has_pull_request_template | ні |
Впровадження в екосистемі (завантаження)
68Помірний
Як обчислюється оцінка
| 54.2/80 | Щомісячні завантаження — 11 687 завантажень/місяць у pypi |
| 0/20 | Залежні пакети в реєстрі — ця екосистема цього не повідомляє |
Використані вхідні дані
| packages | splicecraft |
| dependents | — |
| ecosystems | pypi |
| total_downloads | — |
| monthly_downloads | 11 687 |
Виключено з оцінювання (немає даних або не застосовно): Залежні пакети в реєстрі. Залишкові ваги перенормовано.
Сталість та врядування
Чи переживе проєкт своїх людей — бас-фактор, реактивність, хто за ним стоїть і як супроводжуються пакети?
53
Стійкість мейнтейнерів (бас-фактор)
26Критичний
Як обчислюється оцінка
| 9/54 | Бас-фактор — на 1 контриб’ютор(ів) припадає половина всіх комітів |
| 8.2/22.5 | Розподіл комітів — головний контриб’ютор — автор 64% комітів |
| 2.7/13.5 | Широта контриб’юторів — 2 контриб’юторів |
| 6/10 | OpenSSF Scorecard: Contributors — project has 2 contributing companies or organizations -- score normalized to 6 |
Використані вхідні дані
| bus_factor | 1 |
| contributors_sampled | 2 |
| top_contributor_share | 0,637 |
Реактивність на issue та PR
36У зоні ризику
Як обчислюється оцінка
| 36.4/46.8 | Вирішення issue — закрито 78% issue |
| 0/38.3 | Прийняття PR — злито 0/2 вирішених PR |
| 0/15 | OpenSSF Scorecard: Code-Review — Found 0/30 approved changesets -- score normalized to 0 |
Використані вхідні дані
| merged_prs | 0 |
| open_issues | 4 |
| closed_issues | 14 |
| issue_closed_ratio | 0,778 |
| closed_unmerged_prs | 2 |
Власність та опіка
64Помірний
Як обчислюється оцінка
| 30/30 | Підтримка власника — у власності організації |
| 0/20 | Верифікований домен |
| 14.6/25 | Охоплення власника — 107 підписників у Binomica-Labs |
| 19.3/25 | Послужний список — 9 публічних репозиторіїв, вік облікового запису ~11 р. |
Використані вхідні дані
| followers | 107 |
| owner_type | Organization |
| is_verified | — |
| owner_login | Binomica-Labs |
| public_repos | 9 |
| account_age_days | 4 320 |
Супровід пакетів
100Відмінний
Як обчислюється оцінка
| 25/25 | Опубліковано й доступно — 1 пакет(ів) у pypi |
| 35/35 | Свіжість публікацій — остання публікація 0 дн. тому |
| 20/20 | Історія версій — 293 опублікованих версій |
| 20/20 | Не застарілий — активний, не deprecated і не yanked |
Використані вхідні дані
| packages | splicecraft |
| ecosystems | pypi |
| any_deprecated | ні |
| min_days_since_publish | 0 |
Інженерна якість
Чи наявні базові інженерні практики та документація?
70
Інженерні практики
60Помірний
Як обчислюється оцінка
| 24/24 | Процеси CI — 3 процес(ів) CI |
| 24/24 | Наявні тести |
| 0/16 | Конфігурація лінтера |
| 0/9.6 | Pre-commit-хуки |
| 0/6.4 | .editorconfig |
| 0/20 | OpenSSF Scorecard: CI-Tests — немає даних |
Використані вхідні дані
| has_ci | так |
| has_tests | так |
| has_editorconfig | ні |
| has_linter_config | ні |
| has_precommit_config | ні |
Виключено з оцінювання (немає даних або не застосовно): OpenSSF Scorecard: CI-Tests. Залишкові ваги перенормовано.
Документація
85Відмінний
Як обчислюється оцінка
| 30/30 | README |
| 25/25 | Каталог документації |
| 0/15 | Сайт документації / домашня сторінка |
| 10/10 | Опис репозиторію |
| 10/10 | Теми — 17 тем |
| 10/10 | Wiki |
Використані вхідні дані
| topics | bioengineering, biology, genetics, microbiology, molecular-biology, plasmid, pure-python, terminal-ui, workbench, biopython, cloning, moclo, mutagenesis, primer3, textual, golden-braid, restriction-enzymes |
| has_wiki | так |
| homepage | — |
| has_readme | так |
| has_docs_dir | так |
| has_description | так |
Безпека
Чи міцні видимі практики безпеки й ланцюга постачання, без непослабленої пов’язаності з юрисдикціями високого ризику?
53
Стан безпеки
53Помірний
Як обчислюється оцінка
| 7.5/7.5 | Binary-Artifacts — no binaries found in the repo |
| 0/7.5 | Branch-Protection — branch protection not enabled on development/release branches |
| 0/2.5 | CI-Tests — немає даних |
| 0/2.5 | CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected |
| 0/7.5 | Code-Review — Found 0/30 approved changesets -- score normalized to 0 |
| 1.5/2.5 | Contributors — project has 2 contributing companies or organizations -- score normalized to 6 |
| 10/10 | Dangerous-Workflow — no dangerous workflow patterns detected |
| 7.5/7.5 | Dependency-Update-Tool — update tool detected |
| 0/5 | Fuzzing — project is not fuzzed |
| 2.5/2.5 | Ліцензія — license file detected |
| 7.5/7.5 | Maintained — 30 commit(s) and 13 issue activity found in the last 90 days -- score normalized to 10 |
| 5/5 | Packaging — packaging workflow detected |
| 0/5 | Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
| 0/5 | SAST — no SAST tool detected |
| 5/5 | Security-Policy — security policy file detected |
| 0/7.5 | Signed-Releases — Project has not signed or included provenance with any releases. |
| 0/7.5 | Token-Permissions — detected GitHub workflow tokens with excessive permissions |
| 7.5/7.5 | Vulnerabilities — 0 existing vulnerabilities detected |
Використані вхідні дані
| source | openssf_scorecard |
| checks_evaluated | 17 |
| scorecard_version | v5.5.0 |
| checks_inconclusive | 1 |
| scorecard_aggregate | 5,3 |
Виключено з оцінювання (немає даних або не застосовно): ci_tests. Залишкові ваги перенормовано.
Готовність до ШІ
Наскільки репозиторій оснащений для розробки та супроводу за участі ШІ-агентів? Незалежний, експериментальний бейдж — вага 0.0, тож він подається окремо і не впливає на загальний індекс здоров'я.
44
Контекст і настанови для агентів
56Помірний
Як обчислюється оцінка
| 45/45 | Інструкції для агентів — CLAUDE.md |
| 0/15 | Машиночитана документація (llms.txt) |
| 11.2/40 | Читабельна історія комітів — намір зазначено у 21 з 100 людських комітів (структурований заголовок або пояснювальний текст) |
Використані вхідні дані
| has_llms_txt | ні |
| legible_history_share | 0,21 |
| agent_instruction_files | CLAUDE.md |
| agent_instruction_max_bytes | 31 044 |
Цикл верифікації (збірка / тести / перевірка типів)
37У зоні ризику
Як обчислюється оцінка
| 0/18 | Розгортання однією командою |
| 22/22 | Автоматизовані тести |
| 0/11 | Конфігурація лінтера / форматера |
| 0/11 | Статична перевірка типів |
| 0/10 | Відтворюване середовище |
| 10/10 | Підтверджена практика роботи з агентами — 21 з останніх 100 комітів створено агентом або з його зазначенням |
| 5/8 | Автоматизоване супроводження — автоматизацію залежностей налаштовано, але у вибірці комітів її не видно |
| 0/10 | OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
Використані вхідні дані
| has_nix | ні |
| has_tests | так |
| lockfiles | — |
| has_dockerfile | ні |
| typed_language | ні |
| bootstrap_files | — |
| has_devcontainer | ні |
| has_linter_config | ні |
| typecheck_configs | — |
| agent_commit_share | 0,21 |
| toolchain_manifests | — |
| dependency_bot_commit_share | 0 |
Читабельність коду для моделей
41У зоні ризику
Як обчислюється оцінка
| 0/45 | Типізований код — Python без конфігурації перевірки типів |
| 41.2/55 | Керовані розміри файлів — 35/140 файлів вихідного коду понад 60 КБ |
Використані вхідні дані
| primary_language | Python |
| largest_source_bytes | 5 335 257 |
| source_files_sampled | 140 |
| oversized_source_files | 35 |
Ключові факти
186зірок GitHub
2контриб'юторів
657комітів за останні 12 місяців
0днів від останнього пушу
100релізів
1бас-фактор
4відкритих issue
PyPIпакетних екосистем
Попередження щодо збору даних
- Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
- deps.dev does not index pypi:splicecraft@1.2.39; advisories assessed against the repository dependency graph instead
- No resolved dependencies carried a version and a supported ecosystem
Докладніше
Історія зірок і форків 0 ★ / 12 ⇿
0Зірки
12Форки
74Релізи
Коли додано кожну зірку й форк — зібрано з GitHub і згруповано за днями. Кумулятивне зростання розміщено просто над денними додаваннями, з яких воно складається, тож їх видно одне проти одного: рівномірне органічне накопичення виглядає зовсім інакше, ніж різкий короткочасний сплеск. Там, де цю різницю можна виміряти, її подано як автентичність росту.
Мажорні 0Мінорні 1Патчі 73
OpenSSF Scorecard 5.3 / 10
5.3сукупно
Незалежна, не прив'язана до інструментів оцінка безпеки від відкритого проєкту OpenSSF Scorecard. Кожна перевірка винагороджує практику безпеки, а не інструмент конкретного постачальника. Перевірки, які Scorecard не зміг визначити, позначено н/д і виключено з оцінки безпеки (вони ніколи не зараховуються як нуль).
| 10 | Binary-Artifacts | no binaries found in the repo |
| 0 | Branch-Protection | branch protection not enabled on development/release branches |
| н/д | CI-Tests | no pull request found |
| 0 | CII-Best-Practices | no effort to earn an OpenSSF best practices badge detected |
| 0 | Code-Review | Found 0/30 approved changesets -- score normalized to 0 |
| 6 | Contributors | project has 2 contributing companies or organizations -- score normalized to 6 |
| 10 | Dangerous-Workflow | no dangerous workflow patterns detected |
| 10 | Dependency-Update-Tool | update tool detected |
| 0 | Fuzzing | project is not fuzzed |
| 10 | License | license file detected |
| 10 | Maintained | 30 commit(s) and 13 issue activity found in the last 90 days -- score normalized to 10 |
| 10 | Packaging | packaging workflow detected |
| 0 | Pinned-Dependencies | dependency not pinned by hash detected -- score normalized to 0 |
| 0 | SAST | no SAST tool detected |
| 10 | Security-Policy | security policy file detected |
| 0 | Signed-Releases | Project has not signed or included provenance with any releases. |
| 0 | Token-Permissions | detected GitHub workflow tokens with excessive permissions |
| 10 | Vulnerabilities | 0 existing vulnerabilities detected |
Прямі залежності 9
| Реєстр | Пакет | Обмеження версії | Маніфест |
|---|---|---|---|
| PyPI | textual | >=8.2.8 | pyproject.toml |
| PyPI | biopython | >=1.86,<1.87 | pyproject.toml |
| PyPI | edlib | >=1.3.9 | pyproject.toml |
| PyPI | primer3-py | >=2.3.0 | pyproject.toml |
| PyPI | platformdirs | >=4.10.0 | pyproject.toml |
| PyPI | pyhmmer | >=0.12.1 | pyproject.toml |
| PyPI | Pillow | >=12.3.0 | pyproject.toml |
| PyPI | pyspellchecker | >=0.8.0 | pyproject.toml |
| PyPI | rich-pixels | >=3.0.1 | pyproject.toml |
Усі залежності 18
Повний розв'язаний набір залежностей із графа залежностей GitHub: 8 прямих і 10 непрямих (транзитивних) пакетів. Транзитивне замикання є повним, коли в репозиторії закомічено lockfile.
| Реєстр | Пакет | Версія | Зв'язок |
|---|---|---|---|
| PyPI | biopython | — | пряма |
| PyPI | pillow | — | пряма |
| PyPI | platformdirs | — | пряма |
| PyPI | primer3-py | — | пряма |
| PyPI | pyhmmer | — | пряма |
| PyPI | pyspellchecker | — | пряма |
| PyPI | rich-pixels | — | пряма |
| PyPI | textual | — | пряма |
| PyPI | build | — | непряма |
| PyPI | coverage | — | непряма |
| PyPI | hatchling | — | непряма |
| PyPI | hypothesis | — | непряма |
| PyPI | pyright | — | непряма |
| PyPI | pytest | — | непряма |
| PyPI | pytest-asyncio | — | непряма |
| PyPI | pytest-xdist | — | непряма |
| PyPI | ruff | — | непряма |
| PyPI | twine | — | непряма |
Сповіщення про залежності не оцінено
Звірка сповіщень не відбулася для цього звіту: No resolved dependencies carried a version and a supported ecosystem
Звіт у форматі JSON машиночитний
{
"data": {
"repo": {
"topics": [
"bioengineering",
"biology",
"genetics",
"microbiology",
"molecular-biology",
"plasmid",
"pure-python",
"terminal-ui",
"workbench",
"biopython",
"cloning",
"moclo",
"mutagenesis",
"primer3",
"textual",
"golden-braid",
"restriction-enzymes"
],
"is_fork": false,
"size_kb": 41829,
"has_wiki": true,
"homepage": null,
"languages": {
"HTML": 24499,
"Python": 13373191
},
"pushed_at": "2026-07-26T00:52:01Z",
"created_at": "2026-03-24T13:59:31Z",
"owner_type": "Organization",
"updated_at": "2026-07-26T00:52:03Z",
"description": "Terminal-based plasmid map viewer, sequence editor, and cloning/mutagenesis workbench in pure Python",
"is_archived": false,
"is_disabled": false,
"license_spdx": "MIT",
"default_branch": "master",
"license_spdx_raw": "MIT",
"primary_language": "Python",
"significant_languages": [
"Python"
]
},
"owner": {
"blog": "binomicalabs.org",
"name": "Binomica Labs",
"type": "Organization",
"login": "Binomica-Labs",
"company": null,
"location": "NYC",
"followers": 107,
"avatar_url": "https://avatars.githubusercontent.com/u/8923498?v=4",
"created_at": "2014-09-26T02:58:47Z",
"is_verified": null,
"public_repos": 9,
"account_age_days": 4320
},
"license": {
"state": "standard",
"spdx_id": "MIT",
"raw_spdx": "MIT",
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"oid": "6eb8fcf387c3b774a9e59f560877bac8af33671c",
"body": "The 32 remaining deferred _h_* handlers (everything that wasn't app-coupled) now\nlive in splicecraft_agent too — the sibling holds all 107 data-only endpoints;\nthe hub keeps only the 26 truly app-coupled handlers. Hub 100,392 -> 98,770.\n\nTheir hub-side blockers were resolved by relocation (clean) or\n[…]\null suite: 5773 passed, ruff +\npyright clean. No test retargets needed.\n\nCo-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>\nClaude-Session: https://claude.ai/code/session_01QsA4wsnRvSLnmWWQdd73LY",
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"headline": "Chase the deferred agent handlers into splicecraft_agent",
"author_name": "Seb",
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"body": "The 75 pure / data-only `_h_*` endpoint handlers (read queries + data mutations\nthat go through the sibling accessors, NOT the running app's widgets) move to a\nnew top-layer sibling (3213 lines: 75 handlers + 22 helpers + 6 consts); hub now\n100604 lines (131k -> 100.6k overall, the agent layer was t\n[…]\ntabase monkeypatches -> `splicecraft_agent.X`.\nFull suite: 5773 passed.\n\nCo-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>\nClaude-Session: https://claude.ai/code/session_01QsA4wsnRvSLnmWWQdd73LY",
"is_bot": false,
"headline": "Extract the data-only agent-API handlers to splicecraft_agent (L7)",
"author_name": "Seb",
"author_login": "scocioba",
"committed_at": "2026-06-21T16:50:24Z",
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"oid": "ed6a73b43762cb2a2af52806656e20a134ef9def",
"body": "The whole-data-directory lifecycle subsystem — the data-safety CORE — moves to a\nnew L1 sibling (1618 lines, 22 fns + 18 consts); hub now 103481 lines:\n\n * daily launch snapshots + data-dir housekeeping (_snapshot_data_files /\n _prune_old_snapshots / _run_data_dir_housekeeping)\n * the canonical\n[…]\nte lands under the sandboxed _state._DATA_DIR. Full\nsuite: 5773 passed.\n\nCo-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>\nClaude-Session: https://claude.ai/code/session_01QsA4wsnRvSLnmWWQdd73LY",
"is_bot": false,
"headline": "Extract the user-data backup/restore engine to splicecraft_backup (L1)",
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"oid": "058b5c58a0cc52cc710502726b1bdd852fad357c",
"body": "_PLASMID_BLOB_DIR + _EXPERIMENTS_DIR -> _state, completing the user-data dir\nmigration that cc37d5b started for the non-product dirs (plugins / ui_snapshots\n/ crash_recovery). Same validated pattern: _state slots + hub reseat at import\n+ conftest _patch() redirect + baseline drop (no hub alias).\n\nTh\n[…]\nirect refs + test_sweep9 setattr\nstring-form). Full suite: 5773 passed.\n\nCo-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>\nClaude-Session: https://claude.ai/code/session_01QsA4wsnRvSLnmWWQdd73LY",
"is_bot": false,
"headline": "Migrate the product user-data dir constants to _state",
"author_name": "Seb",
"author_login": "scocioba",
"committed_at": "2026-06-21T15:22:33Z",
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"oid": "cc37d5b3e70512dbb677b89e0734efdee614c827",
"body": "_PLUGINS_DIR, _UI_SNAPSHOTS_DIR, _CRASH_RECOVERY_DIR -> _state (the validated\n_*_FILE / _HMM_DATABASES_DIR pattern): _state slots + hub reseat at import +\nconftest _patch() redirect. Removes _resolve_state_or_hub's reliance on the hub\nglobals() fallback for these dirs, de-risking the eventual backup\n[…]\nby the suite). Full suite: 5772 passed (1 pre-existing UI-modal flake).\n\nCo-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>\nClaude-Session: https://claude.ai/code/session_01QsA4wsnRvSLnmWWQdd73LY",
"is_bot": false,
"headline": "Migrate non-product user-data dir constants to _state",
"author_name": "Seb",
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"oid": "cfe4264bf859005ca1e9a8fab6f03feabc2b41a0",
"body": "The layered-siblings list had drifted: net, search, codon, and primer (all\nextracted across prior sessions) were missing bullets. Add them, and expand the\nsearch bullet to cover the HMM-DB downloader it now owns. All 23 splicecraft_*.py\nsiblings are now documented; also note _now/_monotonic moving into util.\n\nCo-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>\nClaude-Session: https://claude.ai/code/session_01QsA4wsnRvSLnmWWQdd73LY",
"is_bot": false,
"headline": "Document the net/search/codon/primer siblings in CLAUDE.md",
"author_name": "Seb",
"author_login": "scocioba",
"committed_at": "2026-06-21T13:57:12Z",
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"oid": "6714de93d7978b760d2defdcf80e7087de301c4f",
"body": "…fied)\n\nMove the HMMER3 database download / version-check / gz-decompress / hmmpress /\ndelete pipeline (23 fns + 8 consts) from the hub into splicecraft_search (L1).\nThe catalog already lived in dataaccess, so this is purely the downloader.\n\nSearch-EXECUTION stays hub-side: _hmmscan_run + its pyhmme\n[…]\n created.\n\nHub 105,852 -> 104,910. Full suite: 5773 passed, 11 skipped.\n\nCo-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>\nClaude-Session: https://claude.ai/code/session_01QsA4wsnRvSLnmWWQdd73LY",
"is_bot": false,
"headline": "Extract the HMM-DB downloader to splicecraft_search (data-safety-veri…",
"author_name": "Seb",
"author_login": "scocioba",
"committed_at": "2026-06-21T13:53:49Z",
"body_truncated": true,
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{
"oid": "850fdd54cf31c234fdb3001307a28458da27b2a7",
"body": "… EBI HMMER web)\n\nMove the online-search subsystem — 28 symbols (the NCBI-BLAST URL-API engine\n_ncbi_blast_online/_parse_xml/_delete_rid, the EBI-HMMER web engine\n_hmmer_web_hmmscan/_parse_json, the shared submit->poll->fetch->parse infra\n_online_http/_online_clean_query/_program_query_kind/_online_\n[…]\n / _hmmer_web_hmmscan end-to-end) + import-layers +\nsurface + smoke green; full suite 5773 passed; ruff + pyright clean; surface byte-for-byte.\n\nCo-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>",
"is_bot": false,
"headline": "Extract the online-search engines to splicecraft_search (NCBI BLAST +…",
"author_name": "Seb",
"author_login": "scocioba",
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"body_truncated": true,
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"oid": "53c6af4d7b2070d3be8d5d2e4245e704b151d438",
"body": "…olden-verified)\n\nCreate splicecraft_seqanalysis (L3) and move the read-only analysis cluster — 12\nsymbols (8 functions + 4 consts, ~520 lines across 5 scattered hub locations): the\nsix-frame ORF finder _find_orfs and the Golden-Braid/MoClo part classifier\n_classify_part_from_plasmid + its helpers (\n[…]\n_state_module +\nimport-layers + surface guards green (no patch retargets); full suite 5773 passed; ruff\n+ pyright clean; surface byte-for-byte.\n\nCo-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>",
"is_bot": false,
"headline": "Extract sequence analysis to a new splicecraft_seqanalysis sibling (g…",
"author_name": "Seb",
"author_login": "scocioba",
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"oid": "97d1db02f4e8080ab74d18c853d334aa0eb5dfad",
"body": "…oning (golden-verified)\n\nMove the Golden-Braid / MoClo domestication primer designers — 8 functions across 5\nscattered hub blocks (~520 lines) — into splicecraft_cloning (L3): _design_gb_primers\n(single-part domestication + internal-Type-IIS synonymous repair) +\n_design_operon_soe_primers (whole-op\n[…]\nlone_handoff + the layer/surface guards green (no patch retargets needed); full\nsuite 5773 passed; ruff + pyright clean; surface byte-for-byte.\n\nCo-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>",
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"headline": "Extract the GB/MoClo domestication primer designers to splicecraft_cl…",
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"body": "…-verified)\n\nMove the Golden-Braid (BsaI Type IIS) fragment-based scrub — 18 symbols (8 functions\n+ the 10-constant _SCRUB_GB_* family, ~360 lines) — from the hub into\nsplicecraft_cloning (L3): _scrub_gb_design + _scrub_gb_{overhang_ok,cluster_center,\npick_cuts,fragment,build_amplicons,verify} + _as\n[…]\nraft_cloning._scrub_design instead.\n\nfull suite 5773 passed; ruff + pyright clean; import-layers + surface guards green;\nsurface byte-for-byte.\n\nCo-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>",
"is_bot": false,
"headline": "Extract the Golden-Braid scrub cluster to splicecraft_cloning (golden…",
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"body": "Move the 4 fragment-prep helpers — _make_synthetic_fragment, _excise_pcr_insert,\n_excise_fragment_pair, _enzyme_is_type_iis (one contiguous ~245-line block) — from the\nhub into splicecraft_cloning (L3). They build/excise the fragments the cloning sims\n(just moved) consume, so the whole traditional-c\n[…]\nloning + test_scrub + test_clone_handoff + the layer/surface guards\ngreen; full suite 5773 passed; ruff + pyright clean; surface byte-for-byte.\n\nCo-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>",
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"headline": "Extract cloning fragment-prep to splicecraft_cloning (golden-verified)",
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"body": "…den-verified)\n\nMove the traditional (restriction) cloning cluster — 9 functions, ~430 lines across\ntwo non-contiguous hub blocks — into splicecraft_cloning (L3, alongside the cloned-\nplasmid + Gibson sims it belongs with): the ligation primitives (_ends_compatible,\n_ligate_fragments, _close_circula\n[…]\ngibson + test_clone_handoff + the layer/surface/state-module guards\ngreen; full suite 5773 passed; ruff + pyright clean; surface byte-for-byte.\n\nCo-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>",
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"body": "…verified)\n\nMove the Gibson assembly cluster — 14 symbols, ~610 lines — from the hub into the\nexisting splicecraft_cloning (L3, the \"simulate the real steps\" construction sibling\nwhere it belongs): _simulate_gibson_assembly + its _gibson_* helpers (overlap detect,\nfragment normalise, body-length val\n[…]\ntraditional_cloning + test_clone_handoff + the layer/surface\nguards green; full suite 5773 passed; ruff + pyright clean; surface byte-for-byte.\n\nCo-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>",
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"headline": "Extract the Gibson assembly simulator to splicecraft_cloning (golden-…",
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"body": "…id golden-verified)\n\nMove the clone-free restriction-site-removal (\"Scrub\" tab) engine — 28 symbols,\n~430 lines across two contiguous blocks — from the hub into splicecraft_primer (L2):\n\n * the planner: _scrub_design + its _scrub_* helpers (_scrub_resolve_sites /\n _scrub_scan_targets / _scrub_o\n[…]\nest_codon\n+ test_mutagenize + the layer/surface/state-module guards green; full suite 5773\npassed; ruff + pyright clean; surface byte-for-byte.\n\nCo-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>",
"is_bot": false,
"headline": "Extract the QuikChange-scrub engine to splicecraft_primer (real-plasm…",
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"body": "…-CDS verified)\n\nMove the mutagenesis-INNER design — _mut_design_inner / _mut_design_modified_outer\n/ _mut_extract_cds + the _MUT_OUTER_MAX_LEN / _MUT_OUTER_ANCHOR / _MUT_MIN_SOE_FRAG\ncaps (6 symbols, ~233 lines) — from the hub into splicecraft_primer, completing\nthe site-directed-mutagenesis subsys\n[…]\neypatched. test_mutagenize 60 + test_operon_soe + the primer suites green;\nfull suite 5773 passed; ruff + pyright clean; surface byte-for-byte.\n\nCo-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>",
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"headline": "Fix the public-surface CI failure on Python 3.12 (3.14-only module du…",
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"inputs": {
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"ecosystems": "pypi",
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"components": [
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{
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{
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{
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],
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},
{
"key": "engineering",
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"metrics": [
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"key": "engineering_practices",
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"notes": [
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{
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{
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{
"key": "documentation",
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"value": 85,
"inputs": {
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],
"has_wiki": true,
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},
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{
"key": "readme",
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},
{
"key": "documentation_directory",
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"points": 25,
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{
"key": "documentation_homepage_site",
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{
"key": "topics",
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}
],
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},
{
"key": "security",
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"weight": 0.16,
"metrics": [
{
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}
},
{
"code": "weights_renormalized",
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],
"value": 53,
"inputs": {
"source": "openssf_scorecard",
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"scorecard_version": "v5.5.0",
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"scorecard_aggregate": 5.3
},
"components": [
{
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"points": 7.5,
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},
{
"key": "branch_protection",
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"points": 0,
"status": "missed",
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},
{
"key": "ci_tests",
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"status": "excluded",
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"code": "no_data",
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],
"max_points": 2.5
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{
"key": "cii_best_practices",
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"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
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},
{
"key": "code_review",
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"points": 0,
"status": "missed",
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},
{
"key": "contributors",
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"points": 1.5,
"status": "partial",
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},
{
"key": "dangerous_workflow",
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"status": "met",
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{
"key": "dependency_update_tool",
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"points": 7.5,
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"details": [],
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},
{
"key": "fuzzing",
"name": "Fuzzing",
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"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
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"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "30 commit(s) and 13 issue activity found in the last 90 days -- score normalized to 10",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow detected",
"points": 5,
"status": "met",
"details": [],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "no SAST tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file detected",
"points": 5,
"status": "met",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
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"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "token_permissions",
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{
"key": "vulnerabilities",
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},
{
"key": "high_risk_jurisdiction_exposure",
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"notes": [
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"code": "jurisdiction_evidence_limits",
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"value": 100,
"inputs": {
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"policy_countries": [
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"review_only_matches": 0,
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"components": [
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"details": [
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"code": "jurisdiction_no_match",
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"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
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{
"key": "ai_readiness",
"band": "at_risk",
"name": "AI Readiness",
"value": 44,
"weight": 0,
"metrics": [
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"key": "ai_agent_context",
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"note": null,
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"inputs": {
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"agent_instruction_max_bytes": 31044
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},
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{
"key": "manageable_file_sizes",
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"detail": "35/140 source files over 60KB",
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],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.13.0"
},
"warnings": [
"Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token",
"deps.dev does not index pypi:splicecraft@1.2.39; advisories assessed against the repository dependency graph instead",
"No resolved dependencies carried a version and a supported ecosystem"
],
"report_type": "repository",
"generated_at": "2026-07-26T00:54:21.643031Z",
"schema_version": "0.27.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/b/Binomica-Labs/SpliceCraft.svg",
"full_name": "Binomica-Labs/SpliceCraft",
"license_state": "standard",
"license_spdx": "MIT"
}Оцінки — це сигнали, а не гарантії. Вони відображають публічно видимі практики на GitHub — це не аудит коду й не гарантія безпеки.
Відсутні дані виключаються, а ваги перенормовуються — нуль за відсутність ніколи не ставиться. Методологія версіонована й відкрита: метрики v1.13.0, схема v0.27.0 — повна методологія · вікі метрик.
Як окремий результат виглядає на тлі всього реєстру: сукупна статистика — PyPI.