Публічний реєстр
Звіт про здоров'я програмного забезпеченнясхема 0.27.0 · метрики 1.13.0 · 2026-07-27 22:26 UTC

CompOmics / ms2pip

MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.

HTML · Jupyter NotebookApache-2.0★ 49 зірок⑂ 19 форківз бер. 2017 р.Переглянути на GitHub ↗

CompOmics/ms2pip має індекс здоров’я 67 зі 100, що відповідає смузі «Помірний». Найвищий показник — Engineering Quality (77/100), найнижчий — AI Readiness (37/100). Останнє оновлення було 14 днів тому. Більшість нещодавньої роботи виконує один учасник.

67
загалом / 100
Помірний

Індекс здоров'я програмного забезпечення

Метрики згруповано у зважені категорії на шкалі 1–100. Загальна оцінка починається як їхнє середнє; коли публічні дані активують Політику юрисдикцій високого ризику, рейтинг коригується й отримує верхню межу 49 («Під ризиком»). Готовність до ШІ не входить до індексу.

67
Відмінний85-100Зразковий; відповідає практично всім перевіреним критеріям
Добрий70-84Здоровий; незначні прогалини
Помірний50-69Прийнятний, але з помітними прогалинами; рекомендовано перевірку
У зоні ризику30-49Суттєві слабкі місця; впровадження потребує обережності
Критичний1-29Серйозні проблеми (покинутий, єдиний мейнтейнер, без базової гігієни)
ЖиттєздатністьСпільнота тавпровадженняСталість таврядуванняІнженернаякістьБезпекаГотовність доШІ

Профіль оцінок

Кожна вісь — окрема категорія. Форма важить більше, ніж середнє: здоровий об'єкт заповнює всю фігуру, тоді як профіль із піками та провалами означає, що сила в одному вимірі маскує ризик в іншому.

Власність

129 підписників114 публічних репозиторіївз бер. 2015 р.

За цим репозиторієм стоїть організація — спільна, підзвітна опіка, здатна пережити будь-якого окремого мейнтейнера.

Пакетні екосистеми

РеєстрПакетВерсіяЗавантажень / місВерсіїОстання публікаціяТеги
PyPIms2pip4.2.02 7193814 днів томуms2pipproteomicspeptide-fragmentationpeak-intensity-predictionspectrum-predictionmachine-learningspectral-libraryfasta2speclib

Метрики за категоріями

Життєздатність

Чи живий проєкт — чи пишеться код і чи виходять релізи?

72Добрий · 22% загального індексу
Як обчислюється оцінка
28.8/36Свіжість push — останній push 14 дн. тому
8.3/36Ритм комітів — 12/52 тижнів із комітами
17/18Обсяг комітів — 78 комітів за останній рік
10/10OpenSSF Scorecard: Maintained — 19 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 10
Використані вхідні дані
commits_last_year78
human_commit_share1
days_since_last_push14
active_weeks_last_year12
Як обчислюється оцінка
27/27Випускає релізи — опубліковано 26 релізів
36/36Свіжість релізів — останній реліз 14 дн. тому
12.6/27Ритм релізів — реліз кожні ~139,8 дн.
0/10OpenSSF Scorecard: Signed-Releases — немає даних
Використані вхідні дані
releases_count26
latest_release_tagv4.2.0
releases_from_tagsні
days_since_latest_release14
mean_days_between_releases139,8
Виключено з оцінювання (немає даних або не застосовно): OpenSSF Scorecard: Signed-Releases. Залишкові ваги перенормовано.

Спільнота та впровадження

Чи має проєкт користувачів, завантаження, увагу та влаштовані умови для контриб’юторів?

49У зоні ризику · 18% загального індексу
Як обчислюється оцінка
27.3/60Зірки — 49 зірок
10.5/25Форки — 19 форків
6.7/15Спостерігачі — 17 спостерігачів
Використані вхідні дані
forks19
stars49
watchers17
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history
Як обчислюється оцінка
22.5/22.5README
22.5/22.5Ліцензія — визнана ліцензія (Apache-2.0)
0/18Настанови CONTRIBUTING
0/13.5Кодекс поведінки
0/7.2Шаблон issue
0/6.3Шаблон PR
Використані вхідні дані
has_readmeтак
has_licenseтак
has_contributingні
has_issue_templateні
has_code_of_conductні
has_pull_request_templateні
Як обчислюється оцінка
45.8/80Щомісячні завантаження — 2 719 завантажень/місяць у pypi
0/20Залежні пакети в реєстрі — ця екосистема цього не повідомляє
Використані вхідні дані
packagesms2pip
dependents
ecosystemspypi
total_downloads
monthly_downloads2 719
Виключено з оцінювання (немає даних або не застосовно): Залежні пакети в реєстрі. Залишкові ваги перенормовано.

Сталість та врядування

Чи переживе проєкт своїх людей — бас-фактор, реактивність, хто за ним стоїть і як супроводжуються пакети?

68Помірний · 24% загального індексу
Як обчислюється оцінка
9/54Бас-фактор — на 1 контриб’ютор(ів) припадає половина всіх комітів
7.2/22.5Розподіл комітів — головний контриб’ютор — автор 68% комітів
13.5/13.5Широта контриб’юторів — 11 контриб’юторів
10/10OpenSSF Scorecard: Contributors — project has 5 contributing companies or organizations
Використані вхідні дані
bus_factor1
contributors_sampled11
top_contributor_share0,682
Як обчислюється оцінка
44/46.8Вирішення issue — закрито 94% issue
30.1/38.3Прийняття PR — злито 144/183 вирішених PR
1.5/15OpenSSF Scorecard: Code-Review — Found 1/10 approved changesets -- score normalized to 1
Використані вхідні дані
merged_prs144
open_issues5
closed_issues81
issue_closed_ratio0,942
closed_unmerged_prs39
Як обчислюється оцінка
30/30Підтримка власника — у власності організації
0/20Верифікований домен
15.2/25Охоплення власника — 129 підписників у CompOmics
25/25Послужний список — 114 публічних репозиторіїв, вік облікового запису ~11 р.
Використані вхідні дані
followers129
owner_typeOrganization
is_verified
owner_loginCompOmics
public_repos114
account_age_days4 143

Супровід пакетів

100Відмінний
Як обчислюється оцінка
25/25Опубліковано й доступно — 1 пакет(ів) у pypi
35/35Свіжість публікацій — остання публікація 14 дн. тому
20/20Історія версій — 38 опублікованих версій
20/20Не застарілий — активний, не deprecated і не yanked
Використані вхідні дані
packagesms2pip
ecosystemspypi
any_deprecatedні
min_days_since_publish14

Інженерна якість

Чи наявні базові інженерні практики та документація?

77Добрий · 20% загального індексу
Як обчислюється оцінка
24/24Процеси CI — 2 процес(ів) CI
24/24Наявні тести
0/16Конфігурація лінтера
0/9.6Pre-commit-хуки
0/6.4.editorconfig
20/20OpenSSF Scorecard: CI-Tests — 9 out of 9 merged PRs checked by a CI test -- score normalized to 10
Використані вхідні дані
has_ciтак
has_testsтак
has_editorconfigні
has_linter_configні
has_precommit_configні

Документація

90Відмінний
Як обчислюється оцінка
30/30README
25/25Каталог документації
15/15Сайт документації / домашня сторінка — https://ms2pip.readthedocs.io
10/10Опис репозиторію
10/10Теми — 6 тем
0/10Wiki
Використані вхідні дані
topicsmachine-learning, mass-spectrometry, peptide-identification, proteomics, spectrum-prediction, peptide-spectrum
has_wikiні
homepagehttps://ms2pip.readthedocs.io
has_readmeтак
has_docs_dirтак
has_descriptionтак

Безпека

Чи міцні видимі практики безпеки й ланцюга постачання, без непослабленої пов’язаності з юрисдикціями високого ризику?

69Помірний · 16% загального індексу

Стан безпеки

61Помірний
Як обчислюється оцінка
7.5/7.5Binary-Artifacts — no binaries found in the repo
6/7.5Branch-Protection — branch protection is not maximal on development and all release branches
2.5/2.5CI-Tests — 9 out of 9 merged PRs checked by a CI test -- score normalized to 10
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
0.8/7.5Code-Review — Found 1/10 approved changesets -- score normalized to 1
2.5/2.5Contributors — project has 5 contributing companies or organizations
10/10Dangerous-Workflow — no dangerous workflow patterns detected
7.5/7.5Dependency-Update-Tool — update tool detected
0/5Fuzzing — project is not fuzzed
2.5/2.5Ліцензія — license file detected
7.5/7.5Maintained — 19 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 10
5/5Packaging — packaging workflow detected
0/5Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
0/5SAST — SAST tool is not run on all commits -- score normalized to 0
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — немає даних
0/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
7.5/7.5Vulnerabilities — 0 existing vulnerabilities detected
Використані вхідні дані
sourceopenssf_scorecard
checks_evaluated17
scorecard_versionv5.5.0
checks_inconclusive1
scorecard_aggregate6,1
Виключено з оцінювання (немає даних або не застосовно): signed_releases. Залишкові ваги перенормовано.
Як обчислюється оцінка
35/35Прямі залежності без відомих сповіщень — жодна пряма залежність не має відомих сповіщень
25/25Непрямі залежності без відомих сповіщень — жодна непряма залежність не має відомих сповіщень
0/40Немає задавнених сповіщень — жодне сповіщення не має дати публікації
Використані вхідні дані
sourceosv
advisories0
affected_packages0
assessed_packages29
unassessed_packages0
affected_by_severitynone
direct_affected_packages0
Виключено з оцінювання (немає даних або не застосовно): Немає задавнених сповіщень. Залишкові ваги перенормовано. Звірено з runtime-замиканням залежностей pypi:ms2pip@4.2.0 — тим, що тягне за собою встановлення опублікованого пакета, — 29 пакетів. Досяжність не аналізується.

Готовність до ШІ

Наскільки репозиторій оснащений для розробки та супроводу за участі ШІ-агентів? Незалежний, експериментальний бейдж — вага 0.0, тож він подається окремо і не впливає на загальний індекс здоров'я.

37У зоні ризику · 0% загального індексу
Як обчислюється оцінка
0/45Інструкції для агентів — немає CLAUDE.md / AGENTS.md / правил редактора
0/15Машиночитана документація (llms.txt)
31.5/40Читабельна історія комітів — намір зазначено у 59 з 100 людських комітів (структурований заголовок або пояснювальний текст)
Використані вхідні дані
has_llms_txtні
legible_history_share0,59
agent_instruction_files
agent_instruction_max_bytes
Як обчислюється оцінка
0/18Розгортання однією командою
22/22Автоматизовані тести
0/11Конфігурація лінтера / форматера
0/11Статична перевірка типів
10/10Відтворюване середовище — lockfile
0/10Підтверджена практика роботи з агентами — серед останніх 100 комітів немає створених агентом
0/8Автоматизоване супроводження — автоматичних оновлень залежностей не виявлено
0/10OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
Використані вхідні дані
has_nixні
has_testsтак
lockfilesuv.lock
has_dockerfileні
typed_languageні
bootstrap_files
has_devcontainerні
has_linter_configні
typecheck_configs
agent_commit_share0
toolchain_manifests
dependency_bot_commit_share0
Як обчислюється оцінка
0/45Типізований код — HTML без конфігурації перевірки типів
55/55Керовані розміри файлів — 0/25 файлів вихідного коду понад 60 КБ
Використані вхідні дані
primary_languageHTML
largest_source_bytes28 997
source_files_sampled25
oversized_source_files0
Як обчислюється оцінка
0/40Схема API (OpenAPI/GraphQL/proto)
0/20Сервер MCP
40/40Придатні до запуску приклади — notebooks
Використані вхідні дані
example_dirsnotebooks
has_mcp_signalні
api_schema_files

Ключові факти

49зірок GitHub
11контриб'юторів
78комітів за останні 12 місяців
14днів від останнього пушу
26релізів
1бас-фактор
5відкритих issue
PyPIпакетних екосистем

Попередження щодо збору даних

  • Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token

Докладніше

Історія зірок і форків 0 ★ / 19 ⇿
0Зірки
19Форки
23Релізи

Коли додано кожну зірку й форк — зібрано з GitHub і згруповано за днями. Кумулятивне зростання розміщено просто над денними додаваннями, з яких воно складається, тож їх видно одне проти одного: рівномірне органічне накопичення виглядає зовсім інакше, ніж різкий короткочасний сплеск. Там, де цю різницю можна виміряти, її подано як автентичність росту.

051015201942017-032021-052025-06
Мажорні 1Мінорні 10Патчі 7

Кожна точка охоплює 8 днів.

OpenSSF Scorecard 6.1 / 10
6.1сукупно

Незалежна, не прив'язана до інструментів оцінка безпеки від відкритого проєкту OpenSSF Scorecard. Кожна перевірка винагороджує практику безпеки, а не інструмент конкретного постачальника. Перевірки, які Scorecard не зміг визначити, позначено н/д і виключено з оцінки безпеки (вони ніколи не зараховуються як нуль).Scorecard v5.5.0 · 2026-07-27 22:26 UTC

10Binary-Artifactsno binaries found in the repo
8Branch-Protectionbranch protection is not maximal on development and all release branches
10CI-Tests9 out of 9 merged PRs checked by a CI test -- score normalized to 10
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
1Code-ReviewFound 1/10 approved changesets -- score normalized to 1
10Contributorsproject has 5 contributing companies or organizations
10Dangerous-Workflowno dangerous workflow patterns detected
10Dependency-Update-Toolupdate tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
10Maintained19 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 10
10Packagingpackaging workflow detected
0Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 0
0SASTSAST tool is not run on all commits -- score normalized to 0
0Security-Policysecurity policy file not detected
н/дSigned-Releasesno releases found
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
10Vulnerabilities0 existing vulnerabilities detected
Прямі залежності 12
РеєстрПакетОбмеження версіїМаніфест
PyPInumpy>=1.25,<3pyproject.toml
PyPIpandas>=1,<3pyproject.toml
PyPIpyteomics>=3.5,<5pyproject.toml
PyPIsqlalchemy>=1.4,<3pyproject.toml
PyPIclick>=7,<9pyproject.toml
PyPIxgboost>=1.3,<3pyproject.toml
PyPIlxml>=4,<7pyproject.toml
PyPIrich>=13,<16pyproject.toml
PyPIpydantic>=2,<3pyproject.toml
PyPIwerkzeug>=2,<4pyproject.toml
PyPIpsm_utils>=1.5,<4pyproject.toml
PyPIms2rescore-rs>=0.5.0,<2pyproject.toml
Усі залежності 176

Повний розв'язаний набір залежностей із графа залежностей GitHub: 15 прямих і 161 непрямих (транзитивних) пакетів. Транзитивне замикання є повним, коли в репозиторії закомічено lockfile.

РеєстрПакетВерсіяЗв'язок
PyPIclick8.4.2пряма
PyPIlxml6.1.1пряма
PyPIms2rescore-rs0.5.0пряма
PyPInumpy1.15.4пряма
PyPInumpy2.4.6пряма
PyPIpandas0.23.4пряма
PyPIpandas2.3.3пряма
PyPIpsm-utils1.5.5пряма
PyPIpydantic2.13.4пряма
PyPIpyteomics3.5.1пряма
PyPIpyteomics4.7.5пряма
PyPIrich14.3.4пряма
PyPIsqlalchemy2.0.51пряма
PyPIwerkzeug3.1.8пряма
PyPIxgboost2.1.4пряма
PyPIaiohappyeyeballs2.7.1непряма
PyPIaiohttp3.14.1непряма
PyPIaiosignal1.4.0непряма
PyPIalabaster1.0.0непряма
PyPIannotated-types0.7.0непряма
PyPIanyio4.14.1непряма
PyPIappnope0.1.4непряма
PyPIasttokens3.0.1непряма
PyPIattrs26.1.0непряма
PyPIbabel2.18.0непряма
PyPIbiopython1.72непряма
PyPIcertifi2026.6.17непряма
PyPIcffi2.1.0непряма
PyPIcharset-normalizer3.4.9непряма
PyPIcolorama0.4.6непряма
PyPIcomm0.2.3непряма
PyPIcommonmark0.9.2непряма
PyPIcontourpy1.3.3непряма
PyPIcuda-bindings13.3.1непряма
PyPIcuda-pathfinder1.5.6непряма
PyPIcuda-toolkit13.0.3.0непряма
PyPIcycler0.12.1непряма
PyPIcython0.29.2непряма
PyPIdebugpy1.8.21непряма
PyPIdecorator5.3.1непряма
PyPIdeeplc4.0.0b1непряма
PyPIdocutils0.22.4непряма
PyPIexecuting2.2.1непряма
PyPIfastobo0.14.1непряма
PyPIfilelock3.29.7непряма
PyPIfonttools4.63.0непряма
PyPIfrozenlist1.8.0непряма
PyPIfsspec2026.6.0непряма
PyPIgreenlet3.5.3непряма
PyPIh110.16.0непряма
PyPIidna3.18непряма
PyPIim2deep2.0.0непряма
PyPIimagesize2.0.0непряма
PyPIiniconfig2.3.0непряма
PyPIipykernel7.3.0непряма
PyPIipython9.15.0непряма
PyPIipython-pygments-lexers1.1.1непряма
PyPIipywidgets8.1.8непряма
PyPIjedi0.20.0непряма
PyPIjinja23.1.6непряма
PyPIjoblib1.5.3непряма
PyPIjupyter-client8.9.1непряма
PyPIjupyter-core5.9.1непряма
PyPIjupyterlab-widgets3.0.16непряма
PyPIkiwisolver1.5.0непряма
PyPIlark1.3.1непряма
PyPIlightning2.6.5непряма
PyPIlightning-utilities0.15.3непряма
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Сповіщення про залежності 0

Встановлення pypi:ms2pip@4.2.0 тягне 29 пакетів, прямих і транзитивних: 0 мають відомі сповіщення, з них 0 — прямі залежності.

Жодне відоме сповіщення не стосується оцінених залежностей.

Сповіщення означає, що версія, записана в графі залежностей, потрапляє в уражений діапазон. Досяжність не аналізується, а граф містить піниї розробки й тестування — знахідка може стосуватися інструментів, а не поставленого коду.

Звіт у форматі JSON машиночитний
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          "headline": "Merge pull request #263 from CompOmics/refactor/cleanup-python-internals",
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          "body": "Update the Python spectrum-processing flow to consume AnnotatedMS2Spectrum and Rust target extraction directly, refresh the related tests.",
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          "headline": "Merge pull request #262 from CompOmics/feat/merge-correlate-preloaded",
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          "body": "- Replace np.corrcoef with direct dot-product Pearson formula\n- Consolidate pearson() in correlation.py, reuse in result.py\n- Cache proforma_to_mass_shift with lru_cache (avoids recomputation)\n- Use model_construct for internal ObservedSpectrum creation",
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          "headline": "Optimize correlation and spectrum construction performance",
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          "is_bot": false,
          "headline": "Skip invalid peptidoforms with summarized warning",
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          "headline": "Update im2deep dep",
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          "body": "Make `correlate` auto-detect whether PSMs carry preloaded spectra\n(MS2Spectrum/AnnotatedMS2Spectrum) or need file-based loading, removing\nthe need for a separate `correlate_preloaded` function.",
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          "headline": "Merge correlate_preloaded into correlate with auto-detection",
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          "headline": "Merge pull request #261 from CompOmics/feat/update-deeplc-im2deep",
          "author_name": "Ralf Gabriels",
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          "headline": "Pass processes to search space build call",
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          "headline": "Run RT/IM predictions once before batching in predict_library",
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          "body": "- Replace retention_time.py and ion_mobility.py wrapper modules with\n  inline calls to deeplc.predict_and_calibrate() and im2deep.predict()\n- Both packages now take PSMList directly (no DataFrame conversion)\n- Lazy imports kept inside if-blocks to avoid loading PyTorch at import\n- Remove iRT calibration peptides (DeepLC v4 handles calibration)\n- Bump psm_utils requirement to >=1.5",
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          "headline": "Update DeepLC and IM2Deep integration for v4/v2 APIs",
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          "body": "Replace C/Cython with ms2rescore-rs",
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          "headline": "Merge pull request #260 from CompOmics/feat/replace-c-with-rust",
          "author_name": "Ralf Gabriels",
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          "is_bot": false,
          "headline": "Suppress ty:unresolved-attribute for TagBase.mass in proforma conversion",
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          "headline": "Install all extras in CI typecheck for optional dep resolution",
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          "headline": "Fix F402: rename loop variable shadowing annotations import",
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          "body": "- Add ty to dev dependency group\n- CI typecheck uses uv run --group dev instead of uvx",
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          "headline": "Add ty to dev dependencies and update CI typecheck",
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          "is_bot": false,
          "headline": "Update project configuration",
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          "body": "- Fix correlate_single: preprocess spectrum (TIC norm, log2 transform)\n  before annotation and target extraction, matching correlate/\n  correlate_preloaded behavior\n- Fix proforma_to_mass_shift: use format spec :+.4f to handle negative\n  mass modifications correctly (was producing [+-value])\n- Add empty PSMList guard in _predict_batch_internal",
          "is_bot": false,
          "headline": "Fix review findings from branch diff",
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          "body": "ms2rescore-rs rejects modification names like UNIMOD:Carbamidomethyl,\naccepting only accession numbers (UNIMOD:4) or mass shifts (+57.0215).\n\nAdd proforma_to_mass_shift() to convert Peptidoform objects to\nmass-shift ProForma strings before passing to Rust functions.\nUses manual string building (~1 µ\n[…]\ns sequence and N/C-terminal\nmodifications; does not handle labile, unlocalized, or interval\nmodifications (not used by ms2pip).\n\npredict_library now works with default modifications (Carbamidomethyl).",
          "is_bot": false,
          "headline": "Convert ProForma modification labels to mass shifts for ms2rescore-rs",
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          "is_bot": false,
          "headline": "Remove C/Cython components and update workflows for Rust integration",
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          "body": "- Move annotate_spectrum, targets_from_annotations, and\n  load_and_match_spectra from spectrum_input.py to new\n  _spectrum_processing.py module\n- spectrum_input.py retains only the public read_spectrum_file function\n- Remove unused type: ignore comments for spectrum_utils imports\n  (now resolved when installed, suppressed at assignment for optional dep)\n- Fix spectrum_utils type ignores to target the actual issue\n  (None assignment, not unresolved import)",
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          "headline": "Move internal spectrum processing to private module",
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          "headline": "Update docs",
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          "is_bot": false,
          "headline": "Add type checking with ty and fix typing issues",
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          "body": "- Replace typing.Dict/List/Tuple/Optional/Union with native syntax\n  (dict, list, tuple, X | None, X | Y) across all package modules\n- Keep from __future__ import annotations for forward references\n  and runtime compatibility with Pydantic and multiprocessing types\n- Remove unused typing imports\n- Bump requires-python to >=3.11\n- Update black and ruff target-version to py311",
          "is_bot": false,
          "headline": "Upgrade type hints to Python 3.11+ style",
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          "body": "- Replace pip with uv in test and build workflows\n- Enable uv dependency caching in test workflow\n- Split test workflow into separate lint and test jobs\n- Use uvx for ruff linting, uv run for pytest\n- Use uv build for sdist and wheel packaging\n- Drop Python 3.9/3.10 from test matrix",
          "is_bot": false,
          "headline": "Streamline CI with uv and dependency caching",
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          "headline": "Remove C/Cython components and update workflows for Rust integration",
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          "headline": "Replace C/Cython code with ms2rescore-rs for all prediction and annot…",
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          "body": "…orm.",
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          "headline": "Don't build for musllinux, as xgboost wheel is missing for this platf…",
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          "author_login": "RalfG",
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          "headline": "Update build configurations and dependencies",
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          "oid": "4d0ba83a3a94d0550a1bcd0d91e4939d81ce0f78",
          "body": "add functionality to parse spectra directly from ms2spectrum objects …",
          "is_bot": false,
          "headline": "Merge pull request #253 from CompOmics/ms2rescore-compatibility",
          "author_name": "Ralf Gabriels",
          "author_login": "RalfG",
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          "headline": "Merge branch 'releases' into ms2rescore-compatibility",
          "author_name": "Ralf Gabriels",
          "author_login": "RalfG",
          "committed_at": "2026-03-25T10:59:25Z",
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          "oid": "d77b30ebe13a03ab2fa16456122467f6a986a100",
          "body": "…ized\n\nIntegrate the MS2Spectrum processing path with the existing parallelized\ninfrastructure instead of duplicating XGBoost and encoding logic. Extract\nshared per-PSM processing in _process_spectra into a helper function to\nsupport both file-based and preloaded spectrum lookups.",
          "is_bot": false,
          "headline": "Refactor process_MS2_spectra into correlate_preloaded using _Parallel…",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-03-25T10:53:22Z",
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          "oid": "0aca6b32b86f34a0c7bbb116056a6a43676796aa",
          "body": "fix logging for spectral library prediction",
          "is_bot": false,
          "headline": "Merge pull request #257 from paretje/hotfix/logging",
          "author_name": "Ralf Gabriels",
          "author_login": "RalfG",
          "committed_at": "2026-02-10T13:08:03Z",
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          "oid": "b2dc58caea7eced88091547901e4a39ddae8ece5",
          "body": "Add scipy to cibuildwheel pip_only_binary, avoiding failed builds",
          "is_bot": false,
          "headline": "Merge pull request #258 from CompOmics/fix/extend-pip-only-binary",
          "author_name": "Ralf Gabriels",
          "author_login": "RalfG",
          "committed_at": "2026-02-10T13:05:32Z",
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          "body": null,
          "is_bot": false,
          "headline": "Add scipy to cibuildwheel pip_only_binary, avoiding failed builds",
          "author_name": "RalfG",
          "author_login": "RalfG",
          "committed_at": "2026-02-10T13:04:54Z",
          "body_truncated": false,
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        },
        {
          "oid": "18b204cbbb169fbaa81bd4d3dcd5430223ed64f7",
          "body": null,
          "is_bot": false,
          "headline": "drop console instance and use rich.print",
          "author_name": "Kevin Velghe",
          "author_login": "paretje",
          "committed_at": "2026-02-10T12:49:31Z",
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        },
        {
          "oid": "7ed80dd0167c1525c537f83bcf55c3cc8022c04f",
          "body": "Don't disable logging during spectral library prediction. Remove console\nparameter to RichHandler, and use global console instance, as used by\n`track`.",
          "is_bot": false,
          "headline": "don't disable logging",
          "author_name": "Kevin Velghe",
          "author_login": "paretje",
          "committed_at": "2026-02-10T12:40:29Z",
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        },
        {
          "oid": "895b88dee82be98d760fc4f0af618f04426ddee6",
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          "avatar_url": "https://avatars.githubusercontent.com/u/93122887?v=4"
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          "avatar_url": "https://avatars.githubusercontent.com/u/41333514?v=4"
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          "avatar_url": "https://avatars.githubusercontent.com/u/1124951?v=4"
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        {
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          "login": "RobbinBouwmeester",
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            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
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            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
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            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
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            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
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          {
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            "reason": "no dangerous workflow patterns detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
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                "key": "monthly_downloads",
                "name": "Monthly downloads",
                "detail": "2,719 downloads/month across pypi",
                "points": 45.8,
                "status": "partial",
                "details": [
                  {
                    "code": "downloads_monthly",
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                      "count": 2719,
                      "ecosystems": "pypi"
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                  }
                ],
                "max_points": 80
              },
              {
                "key": "registry_dependents",
                "name": "Registry dependents",
                "detail": "not reported by this ecosystem",
                "points": 0,
                "status": "excluded",
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                    "code": "not_reported_by_this_ecosystem",
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        ],
        "description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
      },
      {
        "key": "governance",
        "band": "moderate",
        "name": "Sustainability & Governance",
        "value": 68,
        "weight": 0.24,
        "metrics": [
          {
            "key": "maintainer_resilience",
            "band": "at_risk",
            "name": "Maintainer resilience (bus factor)",
            "note": null,
            "notes": [],
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            "inputs": {
              "bus_factor": 1,
              "contributors_sampled": 11,
              "top_contributor_share": 0.682
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            "components": [
              {
                "key": "bus_factor",
                "name": "Bus factor",
                "detail": "1 contributor(s) cover half of all commits",
                "points": 9,
                "status": "partial",
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                  {
                    "code": "bus_factor",
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                      "count": 1
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                  }
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                "max_points": 54
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              {
                "key": "commit_distribution",
                "name": "Commit distribution",
                "detail": "top contributor authored 68% of commits",
                "points": 7.2,
                "status": "partial",
                "details": [
                  {
                    "code": "top_contributor_share",
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                      "share": 68
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                ],
                "max_points": 22.5
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              {
                "key": "contributor_breadth",
                "name": "Contributor breadth",
                "detail": "11 contributors",
                "points": 13.5,
                "status": "met",
                "details": [
                  {
                    "code": "contributors_sampled",
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                      "count": 11
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                ],
                "max_points": 13.5
              },
              {
                "key": "openssf_scorecard_contributors",
                "name": "OpenSSF Scorecard: Contributors",
                "detail": "project has 5 contributing companies or organizations",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
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            ]
          },
          {
            "key": "responsiveness",
            "band": "good",
            "name": "Issue & PR responsiveness",
            "note": null,
            "notes": [],
            "value": 76,
            "inputs": {
              "merged_prs": 144,
              "open_issues": 5,
              "closed_issues": 81,
              "issue_closed_ratio": 0.942,
              "closed_unmerged_prs": 39
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            "components": [
              {
                "key": "issue_resolution",
                "name": "Issue resolution",
                "detail": "94% of issues closed",
                "points": 44,
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                    "code": "issues_closed_share",
                    "params": {
                      "share": 94
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                  }
                ],
                "max_points": 46.75
              },
              {
                "key": "pr_acceptance",
                "name": "PR acceptance",
                "detail": "144/183 decided PRs merged",
                "points": 30.1,
                "status": "partial",
                "details": [
                  {
                    "code": "decided_prs_merged",
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                      "merged": 144,
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                  }
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                "max_points": 38.25
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              {
                "key": "openssf_scorecard_code_review",
                "name": "OpenSSF Scorecard: Code-Review",
                "detail": "Found 1/10 approved changesets -- score normalized to 1",
                "points": 1.5,
                "status": "partial",
                "details": [],
                "max_points": 15
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            ]
          },
          {
            "key": "stewardship",
            "band": "good",
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            "note": null,
            "notes": [],
            "value": 70,
            "inputs": {
              "followers": 129,
              "owner_type": "Organization",
              "is_verified": null,
              "owner_login": "CompOmics",
              "public_repos": 114,
              "account_age_days": 4143
            },
            "components": [
              {
                "key": "ownership_backing",
                "name": "Ownership backing",
                "detail": "organization-owned",
                "points": 30,
                "status": "met",
                "details": [
                  {
                    "code": "owner_organization",
                    "params": {}
                  }
                ],
                "max_points": 30
              },
              {
                "key": "verified_domain",
                "name": "Verified domain",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "owner_reach",
                "name": "Owner reach",
                "detail": "129 followers of CompOmics",
                "points": 15.2,
                "status": "partial",
                "details": [
                  {
                    "code": "owner_followers",
                    "params": {
                      "count": 129,
                      "login": "CompOmics"
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                  }
                ],
                "max_points": 25
              },
              {
                "key": "track_record",
                "name": "Track record",
                "detail": "114 public repos, account ~11 yr old",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "public_repos",
                    "params": {
                      "count": 114
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                  },
                  {
                    "code": "account_age_years",
                    "params": {
                      "years": 11
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                  }
                ],
                "max_points": 25
              }
            ]
          },
          {
            "key": "package_maintenance",
            "band": "excellent",
            "name": "Package maintenance",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "packages": [
                "ms2pip"
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              "ecosystems": "pypi",
              "any_deprecated": false,
              "min_days_since_publish": 14
            },
            "components": [
              {
                "key": "published_resolvable",
                "name": "Published & resolvable",
                "detail": "1 package(s) on pypi",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "packages_published",
                    "params": {
                      "count": 1,
                      "ecosystems": "pypi"
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                  }
                ],
                "max_points": 25
              },
              {
                "key": "publish_recency",
                "name": "Publish recency",
                "detail": "latest publish 14 days ago",
                "points": 35,
                "status": "met",
                "details": [
                  {
                    "code": "publish_recency",
                    "params": {
                      "days": 14
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                  }
                ],
                "max_points": 35
              },
              {
                "key": "version_history",
                "name": "Version history",
                "detail": "38 published versions",
                "points": 20,
                "status": "met",
                "details": [
                  {
                    "code": "published_versions",
                    "params": {
                      "count": 38
                    }
                  }
                ],
                "max_points": 20
              },
              {
                "key": "not_deprecated",
                "name": "Not deprecated",
                "detail": "active, not deprecated or yanked",
                "points": 20,
                "status": "met",
                "details": [
                  {
                    "code": "package_not_deprecated",
                    "params": {}
                  }
                ],
                "max_points": 20
              }
            ]
          }
        ],
        "description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
      },
      {
        "key": "engineering",
        "band": "good",
        "name": "Engineering Quality",
        "value": 77,
        "weight": 0.2,
        "metrics": [
          {
            "key": "engineering_practices",
            "band": "moderate",
            "name": "Engineering practices",
            "note": null,
            "notes": [],
            "value": 68,
            "inputs": {
              "has_ci": true,
              "has_tests": true,
              "has_editorconfig": false,
              "has_linter_config": false,
              "has_precommit_config": false
            },
            "components": [
              {
                "key": "ci_workflows",
                "name": "CI workflows",
                "detail": "2 workflow(s)",
                "points": 24,
                "status": "met",
                "details": [
                  {
                    "code": "ci_workflows",
                    "params": {
                      "count": 2
                    }
                  }
                ],
                "max_points": 24
              },
              {
                "key": "tests_present",
                "name": "Tests present",
                "detail": null,
                "points": 24,
                "status": "met",
                "details": [],
                "max_points": 24
              },
              {
                "key": "linter_config",
                "name": "Linter config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 16
              },
              {
                "key": "pre_commit_hooks",
                "name": "Pre-commit hooks",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 9.6
              },
              {
                "key": "editorconfig",
                "name": ".editorconfig",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.4
              },
              {
                "key": "openssf_scorecard_ci_tests",
                "name": "OpenSSF Scorecard: CI-Tests",
                "detail": "9 out of 9 merged PRs checked by a CI test -- score normalized to 10",
                "points": 20,
                "status": "met",
                "details": [],
                "max_points": 20
              }
            ]
          },
          {
            "key": "documentation",
            "band": "excellent",
            "name": "Documentation",
            "note": null,
            "notes": [],
            "value": 90,
            "inputs": {
              "topics": [
                "machine-learning",
                "mass-spectrometry",
                "peptide-identification",
                "proteomics",
                "spectrum-prediction",
                "peptide-spectrum"
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              "has_wiki": false,
              "homepage": "https://ms2pip.readthedocs.io",
              "has_readme": true,
              "has_docs_dir": true,
              "has_description": true
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 30,
                "status": "met",
                "details": [],
                "max_points": 30
              },
              {
                "key": "documentation_directory",
                "name": "Documentation directory",
                "detail": null,
                "points": 25,
                "status": "met",
                "details": [],
                "max_points": 25
              },
              {
                "key": "documentation_homepage_site",
                "name": "Documentation / homepage site",
                "detail": "https://ms2pip.readthedocs.io",
                "points": 15,
                "status": "met",
                "details": [],
                "max_points": 15
              },
              {
                "key": "repository_description",
                "name": "Repository description",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "topics",
                "name": "Topics",
                "detail": "6 topics",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "topics_count",
                    "params": {
                      "count": 6
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                  }
                ],
                "max_points": 10
              },
              {
                "key": "wiki",
                "name": "Wiki",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
      },
      {
        "key": "security",
        "band": "moderate",
        "name": "Security",
        "value": 69,
        "weight": 0.16,
        "metrics": [
          {
            "key": "security_posture",
            "band": "moderate",
            "name": "Security posture",
            "note": "Excluded from scoring (no data or not applicable): Signed-Releases. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "signed_releases"
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                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 61,
            "inputs": {
              "source": "openssf_scorecard",
              "checks_evaluated": 17,
              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 1,
              "scorecard_aggregate": 6.1
            },
            "components": [
              {
                "key": "binary_artifacts",
                "name": "Binary-Artifacts",
                "detail": "no binaries found in the repo",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "branch protection is not maximal on development and all release branches",
                "points": 6,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "ci_tests",
                "name": "CI-Tests",
                "detail": "9 out of 9 merged PRs checked by a CI test -- score normalized to 10",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "code_review",
                "name": "Code-Review",
                "detail": "Found 1/10 approved changesets -- score normalized to 1",
                "points": 0.8,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 5 contributing companies or organizations",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no dangerous workflow patterns detected",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "update tool detected",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "19 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 10",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow detected",
                "points": 5,
                "status": "met",
                "details": [],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
                "detail": "SAST tool is not run on all commits -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "security_policy",
                "name": "Security-Policy",
                "detail": "security policy file not detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "signed_releases",
                "name": "Signed-Releases",
                "detail": "no releases found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "detected GitHub workflow tokens with excessive permissions",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "0 existing vulnerabilities detected",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              }
            ]
          },
          {
            "key": "dependency_advisories",
            "band": "excellent",
            "name": "Dependency advisories",
            "note": "Excluded from scoring (no data or not applicable): No advisories left outstanding. Remaining weights renormalized. Matched the pypi:ms2pip@4.2.0 runtime dependency closure — what installing the published package pulls in — 29 packages. Reachability is not analyzed.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "no_advisories_left_outstanding"
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                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              },
              {
                "code": "advisories_scope_published",
                "params": {
                  "package": "pypi:ms2pip@4.2.0",
                  "assessed": 29
                }
              },
              {
                "code": "advisories_reachability",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "source": "osv",
              "advisories": 0,
              "affected_packages": 0,
              "assessed_packages": 29,
              "unassessed_packages": 0,
              "affected_by_severity": "none",
              "direct_affected_packages": 0
            },
            "components": [
              {
                "key": "direct_dependencies_free_of_known_advisories",
                "name": "Direct dependencies free of known advisories",
                "detail": "no direct dependency carries a known advisory",
                "points": 35,
                "status": "met",
                "details": [
                  {
                    "code": "no_direct_advisories",
                    "params": {}
                  }
                ],
                "max_points": 35
              },
              {
                "key": "indirect_dependencies_free_of_known_advisories",
                "name": "Indirect dependencies free of known advisories",
                "detail": "no indirect dependency carries a known advisory",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "no_indirect_advisories",
                    "params": {}
                  }
                ],
                "max_points": 25
              },
              {
                "key": "no_advisories_left_outstanding",
                "name": "No advisories left outstanding",
                "detail": "no advisory carries a publication date",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "advisories_no_publication_date",
                    "params": {}
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "malicious_dependencies",
            "band": "excellent",
            "name": "Malicious dependencies",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "source": "osv",
              "meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
              "packages": [],
              "red_flag": false,
              "assessed_packages": 29,
              "malicious_packages": 0,
              "direct_malicious_packages": 0,
              "withdrawn_malicious_packages": 0,
              "installable_malicious_packages": 0
            },
            "components": [
              {
                "key": "no_dependency_reported_as_a_malicious_package",
                "name": "No dependency reported as a malicious package",
                "detail": "no dependency is reported as a malicious package",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "no_malicious_dependencies",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          },
          {
            "key": "high_risk_jurisdiction_exposure",
            "band": "excellent",
            "name": "High-Risk Jurisdiction Exposure",
            "note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
            "notes": [
              {
                "code": "jurisdiction_evidence_limits",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "meaning": "self-published location evidence; not nationality or citizenship",
              "red_flag": false,
              "exposures": [],
              "policy_countries": [
                "Russia",
                "Iran",
                "North Korea"
              ],
              "review_only_matches": 0,
              "assessed_self_published_locations": 8
            },
            "components": [
              {
                "key": "policy_exposure_multiplier",
                "name": "Policy exposure multiplier",
                "detail": "no confirmed policy-scope location match",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "jurisdiction_no_match",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "at_risk",
        "name": "AI Readiness",
        "value": 37,
        "weight": 0,
        "metrics": [
          {
            "key": "ai_agent_context",
            "band": "at_risk",
            "name": "Agent context & guidance",
            "note": null,
            "notes": [],
            "value": 32,
            "inputs": {
              "has_llms_txt": false,
              "legible_history_share": 0.59,
              "agent_instruction_files": [],
              "agent_instruction_max_bytes": null
            },
            "components": [
              {
                "key": "agent_instructions",
                "name": "Agent instructions",
                "detail": "no CLAUDE.md / AGENTS.md / editor rules",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_instructions",
                    "params": {}
                  }
                ],
                "max_points": 45
              },
              {
                "key": "machine_readable_docs_llms_txt",
                "name": "Machine-readable docs (llms.txt)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "legible_commit_history",
                "name": "Legible commit history",
                "detail": "59 of 100 human commits state their intent (structured subject or explanatory body)",
                "points": 31.5,
                "status": "partial",
                "details": [
                  {
                    "code": "legible_history",
                    "params": {
                      "legible": 59,
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "ai_verify_loop",
            "band": "at_risk",
            "name": "Verify loop (build / test / typecheck)",
            "note": null,
            "notes": [],
            "value": 32,
            "inputs": {
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Оцінки — це сигнали, а не гарантії. Вони відображають публічно видимі практики на GitHub — це не аудит коду й не гарантія безпеки.

Відсутні дані виключаються, а ваги перенормовуються — нуль за відсутність ніколи не ставиться. Методологія версіонована й відкрита: метрики v1.13.0, схема v0.27.0 — повна методологія · вікі метрик.

Як окремий результат виглядає на тлі всього реєстру: сукупна статистикаPyPI.