Öffentliches Register
Software-GesundheitsberichtSchema 0.26.0 · Metriken 1.13.0 · 2026-07-22 15:27 UTC

evolbioinfo / goalign

Goalign : a set of command line tools and an API to manipulate multiple sequence alignments.

Go · ShellGPL-2.0★ 90 Sterne⑂ 8 Forksseit Aug. 2016Auf GitHub ansehen ↗

evolbioinfo/goalign erreicht einen Gesundheitsindex von 59 von 100 und liegt damit im Bereich Mittel. Am stärksten schneidet es bei Engineering Quality (76/100) ab, am schwächsten bei Security (35/100). Zuletzt vor 7 Tagen aktualisiert. Ein einzelner Mitwirkender trägt den Großteil der jüngsten Arbeit.

59
gesamt / 100
Mittel

Software-Gesundheitsindex

Metriken werden auf einer Skala von 1–100 in gewichtete Kategorien gruppiert. Der Gesamtwert beginnt als ihr Mittel; sobald öffentliche Evidenz die Richtlinie für Hochrisikojurisdiktionen auslöst, wird die Bewertung angepasst und erhält die Obergrenze 49 (Gefährdet). AI Readiness liegt außerhalb.

59
Exzellent85-100Vorbildlich; erfüllt im Wesentlichen alle geprüften Kriterien
Gut70-84Gesund; geringfügige Lücken
Mittel50-69Akzeptabel mit deutlichen Lücken; Überprüfung empfohlen
Gefährdet30-49Erhebliche Schwächen; eine Übernahme erfordert Vorsicht
Kritisch1-29Schwerwiegende Probleme (aufgegeben, nur ein Maintainer, keine Hygiene)
VitalitätCommunity &VerbreitungNachhaltigkeit &GovernanceEngineering-QualitätSicherheitAI Readiness

Bewertungsprofil

Jede Achse ist eine Kategorie. Die Form zählt mehr als der Durchschnitt — ein gesundes Projekt füllt die gesamte Fläche, während ein Profil aus Spitzen und Kratern bedeutet, dass Stärke in einer Dimension Risiken in einer anderen verdeckt.

Eigentümerschaft

50 Follower30 öffentliche Reposseit Feb. 2017

Dieses Repository wird von einer Organisation getragen — geteilte, rechenschaftspflichtige Trägerschaft, die jeden einzelnen Maintainer überdauern kann.

Paket-Ökosysteme

RegistryPaketVersionDownloads / MonatVersionenZuletzt veröffentlicht
Gogithub.com/evolbioinfo/goalignv0.4.1-41vor 12 Tagen

Metriken nach Kategorie

Vitalität

Lebt das Projekt — wird Code geschrieben und werden Releases ausgeliefert?

68Mittel · 22 % des Gesamtindex
Wie die Bewertung erfolgt
36/36Push-Aktualität — letzter Push vor 7 Tagen
9.7/36Commit-Rhythmus — 14/52 Wochen mit Commits
14/18Commit-Volumen — 35 Commits im letzten Jahr
2/10OpenSSF Scorecard: Maintained — 3 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 2
Verwendete Eingangsdaten
commits_last_year35
human_commit_share1
days_since_last_push7
active_weeks_last_year14
Wie die Bewertung erfolgt
27/27Liefert Releases aus — 49 Releases veröffentlicht
36/36Release-Aktualität — letztes Release vor 7 Tagen
12.6/27Release-Rhythmus — ein Release etwa alle 211,5 Tage
0/10OpenSSF Scorecard: Signed-Releases — Project has not signed or included provenance with any releases.
Verwendete Eingangsdaten
releases_count49
latest_release_tagv0.4.1
releases_from_tagsnein
days_since_latest_release7
mean_days_between_releases211,5

Community & Verbreitung

Hat das Projekt Nutzer, Downloads, Aufmerksamkeit und ein einladendes Umfeld für Beitragende?

47Gefährdet · 18 % des Gesamtindex
Wie die Bewertung erfolgt
31.6/60Stars — 90 Stars
7/25Forks — 8 Forks
5.6/15Watcher — 11 Watcher
Verwendete Eingangsdaten
forks8
stars90
watchers11
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history
Wie die Bewertung erfolgt
22.5/22.5README
22.5/22.5Lizenz — anerkannte Lizenz (GPL-2.0)
0/18CONTRIBUTING-Leitfaden
0/13.5Verhaltenskodex
0/7.2Issue-Vorlage
0/6.3PR-Vorlage
Verwendete Eingangsdaten
has_readmeja
has_licenseja
has_contributingnein
has_issue_templatenein
has_code_of_conductnein
has_pull_request_templatenein

Nachhaltigkeit & Governance

Überdauert das Projekt die Menschen, die es tragen — Bus-Faktor, Reaktionsfähigkeit, Trägerschaft und Paketpflege?

62Mittel · 24 % des Gesamtindex
Wie die Bewertung erfolgt
9/54Bus-Faktor — 1 Beitragende decken die Hälfte aller Commits ab
0.1/22.5Commit-Verteilung — wichtigste beitragende Person verfasste 100 % der Commits
2.7/13.5Breite der Beitragenden — 2 Beitragende
3/10OpenSSF Scorecard: Contributors — project has 1 contributing companies or organizations -- score normalized to 3
Verwendete Eingangsdaten
bus_factor1
contributors_sampled2
top_contributor_share0,996
Wie die Bewertung erfolgt
46.8/46.8Issue-Lösungsquote — 100 % der Issues geschlossen
38.2/38.3PR-Annahme — 2/2 entschiedene PRs gemergt
0/15OpenSSF Scorecard: Code-Review — Found 0/30 approved changesets -- score normalized to 0
Verwendete Eingangsdaten
merged_prs2
open_issues0
closed_issues18
issue_closed_ratio1
closed_unmerged_prs0
Wie die Bewertung erfolgt
30/30Organisatorische Trägerschaft — im Besitz einer Organisation
0/20Verifizierte Domain
12.3/25Reichweite des Inhabers — 50 Follower von evolbioinfo
22.9/25Kontohistorie — 30 öffentliche Repos, Kontoalter ca. 9 Jahre
Verwendete Eingangsdaten
followers50
owner_typeOrganization
is_verified
owner_loginevolbioinfo
public_repos30
account_age_days3.437

Paketpflege

100Exzellent
Wie die Bewertung erfolgt
25/25Veröffentlicht & auflösbar — 1 Paket(e) auf go
35/35Veröffentlichungsaktualität — letzte Veröffentlichung vor 12 Tagen
20/20Versionshistorie — 41 veröffentlichte Versionen
20/20Nicht veraltet — aktiv, nicht veraltet oder zurückgezogen
Verwendete Eingangsdaten
packagesgithub.com/evolbioinfo/goalign
ecosystemsgo
any_deprecatednein
min_days_since_publish12

Engineering-Qualität

Sind grundlegende Engineering- und Dokumentationspraktiken vorhanden?

76Gut · 20 % des Gesamtindex
Wie die Bewertung erfolgt
24/24CI-Workflows — 1 Workflow(s)
24/24Tests vorhanden
0/16Linter-Konfiguration
0/9.6Pre-Commit-Hooks
0/6.4.editorconfig
0/20OpenSSF Scorecard: CI-Tests — keine Daten
Verwendete Eingangsdaten
has_cija
has_testsja
has_editorconfignein
has_linter_confignein
has_precommit_confignein
Von der Bewertung ausgeschlossen (keine Daten oder nicht anwendbar): OpenSSF Scorecard: CI-Tests. Die verbleibenden Gewichte wurden renormalisiert.

Dokumentation

100Exzellent
Wie die Bewertung erfolgt
30/30README
25/25Dokumentationsverzeichnis
15/15Dokumentations-/Homepage-Site — https://research.pasteur.fr/en/software/goalign-gotree/
10/10Repository-Beschreibung
10/10Topics — 6 Topics
10/10Wiki
Verwendete Eingangsdaten
topicsphylogeny, alignment, phylip, fasta, phylip-alignment, nexus
has_wikija
homepagehttps://research.pasteur.fr/en/software/goalign-gotree/
has_readmeja
has_docs_dirja
has_descriptionja

Sicherheit

Sind die sichtbaren Sicherheits- und Lieferkettenpraktiken belastbar, ohne ungeklärte Exposition gegenüber Hochrisikojurisdiktionen?

35Gefährdet · 16 % des Gesamtindex

Sicherheitslage

25Kritisch
Wie die Bewertung erfolgt
7.5/7.5Binary-Artifacts — no binaries found in the repo
0/7.5Branch-Protection — keine Daten
0/2.5CI-Tests — keine Daten
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
0/7.5Code-Review — Found 0/30 approved changesets -- score normalized to 0
0.8/2.5Contributors — project has 1 contributing companies or organizations -- score normalized to 3
10/10Dangerous-Workflow — no dangerous workflow patterns detected
0/7.5Dependency-Update-Tool — no update tool detected
0/5Fuzzing — project is not fuzzed
2.5/2.5Lizenz — license file detected
1.5/7.5Maintained — 3 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 2
0/5Packaging — keine Daten
0/5Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
0/5SAST — no SAST tool detected
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — Project has not signed or included provenance with any releases.
0/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
0/7.5Vulnerabilities — 11 existing vulnerabilities detected
Verwendete Eingangsdaten
sourceopenssf_scorecard
checks_evaluated15
scorecard_versionv5.5.0
checks_inconclusive3
scorecard_aggregate2,5
Von der Bewertung ausgeschlossen (keine Daten oder nicht anwendbar): branch_protection, ci_tests, packaging. Die verbleibenden Gewichte wurden renormalisiert.
Wie die Bewertung erfolgt
20.2/35Direkte Abhängigkeiten ohne bekannte Advisories — 1 betroffen: github.com/ulikunitz/xz v0.5.10 (moderate 5.3)
0/25Indirekte Abhängigkeiten ohne bekannte Advisories — transitive Menge in diesem Bereich nicht von Entwicklungs- und Test-Abhängigkeiten trennbar
35.3/40Keine offenen Advisories — 1 Paket(e) mit Advisory seit über 90 Tagen unbehandelt; ältestes vor 327 Tagen veröffentlicht
Verwendete Eingangsdaten
sourceosv
advisories14
affected_packages4
assessed_packages34
unassessed_packages0
affected_by_severityhigh 1, moderate 1, unknown 2
direct_affected_packages1
Von der Bewertung ausgeschlossen (keine Daten oder nicht anwendbar): Indirekte Abhängigkeiten ohne bekannte Advisories. Die verbleibenden Gewichte wurden renormalisiert. 34 aufgelöste Abhängigkeiten wurden mit OSV abgeglichen. Dieses Repository veröffentlicht kein Paket, das der Index auflöst; bewertet wurde daher der Abhängigkeitsgraph des Repositorys. Dieser Graph vermischt Entwicklungs- und Test-Pins mit ausgelieferten Abhängigkeiten, daher werden nur die deklarierten Laufzeit-Abhängigkeiten bewertet; transitive Befunde werden als Kontext ausgewiesen und fließen nicht in die Bewertung ein. Erreichbarkeit wird nicht analysiert.

AI Readiness

Wie gut ist das Repository dafür ausgestattet, mit KI-Coding-Agenten entwickelt und gepflegt zu werden? Ein unabhängiges, experimentelles Badge — Gewicht 0,0, es wird eigenständig ausgewiesen und verändert den Gesamt-Gesundheitswert nicht.

48Gefährdet · 0 % des Gesamtindex
Wie die Bewertung erfolgt
0/45Agentenanweisungen — keine CLAUDE.md / AGENTS.md / Editor-Regeln
0/15Maschinenlesbare Doku (llms.txt)
4.3/40Lesbare Commit-Historie — 8 von 100 menschlichen Commits benennen ihre Absicht (strukturierter Betreff oder erläuternder Text)
Verwendete Eingangsdaten
has_llms_txtnein
legible_history_share0,08
agent_instruction_files
agent_instruction_max_bytes
Wie die Bewertung erfolgt
18/18Bootstrap mit einem Befehl — Makefile
22/22Automatisierte Tests
0/11Lint-/Format-Konfiguration
11/11Statische Typprüfung — Go (statisch typisiert)
10/10Reproduzierbare Umgebung — lockfile
0/10Belegte Agentenpraxis — keine von Agenten verfassten Commits unter den letzten 100
0/8Automatisierte Wartung — keine automatisierten Abhängigkeits-Updates beobachtet
0/10OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
Verwendete Eingangsdaten
has_nixnein
has_testsja
lockfilesgo.sum
has_dockerfilenein
typed_languageja
bootstrap_filesMakefile
has_devcontainernein
has_linter_confignein
typecheck_configs
agent_commit_share0
toolchain_manifestsgo.mod
dependency_bot_commit_share0
Wie die Bewertung erfolgt
45/45Typprüfbarer Code — Go (statisch typisiert)
54/55Handhabbare Dateigrößen — 3/172 Quelldateien über 60 KB
Verwendete Eingangsdaten
primary_languageGo
largest_source_bytes122.666
source_files_sampled172
oversized_source_files3

Eckdaten

90GitHub-Sterne
2Mitwirkende
35Commits, letzte 12 Monate
7Tage seit letztem Push
49Releases
1Bus-Faktor
0offene Issues
GoPaket-Ökosysteme

Warnungen zur Datenerhebung

  • Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token

Weitere Details

Stern- und Fork-Verlauf 0 ★ / 8 ⇿
0Sterne
8Forks
11Releases

Wann jeder Stern und Fork hinzugefügt wurde, von GitHub erfasst und nach Tagen gruppiert. Das kumulierte Wachstum steht direkt über den täglichen Zugängen, aus denen es besteht, sodass beide gegeneinander lesbar sind: stetiger organischer Zuwachs sieht ganz anders aus als ein abrupter, kurzlebiger Ausschlag. Wo dieser Unterschied messbar ist, wird er als Wachstumsauthentizität ausgewiesen.

02468812020-042021-092023-01
Major 0Minor 0Patch 3

Jeder Punkt umfasst 3 Tage.

OpenSSF Scorecard 2.5 / 10
2.5Gesamtwert

Unabhängige, werkzeugneutrale Sicherheitsbewertung durch das quelloffene OpenSSF Scorecard. Jede Prüfung honoriert eine Sicherheits-Praxis, nicht das Werkzeug eines bestimmten Anbieters. Prüfungen, die Scorecard nicht ermitteln konnte, sind mit k. A. markiert und vom Sicherheitswert ausgeschlossen (nie als null gezählt).Scorecard v5.5.0 · 2026-07-22 15:27 UTC

10Binary-Artifactsno binaries found in the repo
k. A.Branch-Protectioninternal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md
k. A.CI-Testsno pull request found
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
0Code-ReviewFound 0/30 approved changesets -- score normalized to 0
3Contributorsproject has 1 contributing companies or organizations -- score normalized to 3
10Dangerous-Workflowno dangerous workflow patterns detected
0Dependency-Update-Toolno update tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
2Maintained3 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 2
k. A.Packagingpackaging workflow not detected
0Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 0
0SASTno SAST tool detected
0Security-Policysecurity policy file not detected
0Signed-ReleasesProject has not signed or included provenance with any releases.
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
0Vulnerabilities11 existing vulnerabilities detected
Direkte Abhängigkeiten 6
RegistryPaketVersionsvorgabeManifest
Gogithub.com/armon/go-radixv1.0.0go.mod
Gogithub.com/fredericlemoine/cobrashellv0.0.0-20180921081141-49c72f93426cgo.mod
Gogithub.com/spf13/cobrav1.5.0go.mod
Gogithub.com/ulikunitz/xzv0.5.10go.mod
Gogonum.org/v1/gonumv0.16.0go.mod
Gogonum.org/v1/plotv0.16.0go.mod
Alle Abhängigkeiten 34

Vollständig aufgelöster Abhängigkeitssatz aus dem GitHub-Abhängigkeitsgraphen: 6 direkte und 28 indirekte (transitive) Pakete. Die transitive Hülle ist vollständig, wenn das Repository eine Lockfile eincheckt.

RegistryPaketVersionBeziehung
Gogithub.com/armon/go-radixv1.0.0direkt
Gogithub.com/fredericlemoine/cobrashellv0.0.0-20180921081141-49c72f93426cdirekt
Gogithub.com/spf13/cobrav1.5.0direkt
Gogithub.com/ulikunitz/xzv0.5.10direkt
Gogonum.org/v1/gonumv0.16.0direkt
Gogonum.org/v1/plotv0.16.0direkt
Gocodeberg.org/go-fonts/liberationv0.5.0indirekt
Gocodeberg.org/go-latex/latexv0.1.0indirekt
Gocodeberg.org/go-pdf/fpdfv0.10.0indirekt
Gogit.sr.ht/~sbinet/ggv0.6.0indirekt
Gogithub.com/abiosoft/ishellv2.0.0+incompatibleindirekt
Gogithub.com/abiosoft/readlinev0.0.0-20180607040430-155bce2042dbindirekt
Gogithub.com/ajstarks/svgov0.0.0-20211024235047-1546f124cd8bindirekt
Gogithub.com/campoy/embedmdv1.0.0indirekt
Gogithub.com/cpuguy83/go-md2man/v2v2.0.2indirekt
Gogithub.com/fatih/colorv1.7.0indirekt
Gogithub.com/flynn-archive/go-shlexv0.0.0-20150515145356-3f9db97f8568indirekt
Gogithub.com/fogleman/ggv1.3.0indirekt
Gogithub.com/go-fonts/liberationv0.1.1indirekt
Gogithub.com/go-latex/latexv0.0.0-20210118124228-b3d85cf34e07indirekt
Gogithub.com/golang/freetypev0.0.0-20170609003504-e2365dfdc4a0indirekt
Gogithub.com/inconshreveable/mousetrapv1.0.1indirekt
Gogithub.com/mattn/go-colorablev0.0.9indirekt
Gogithub.com/mattn/go-isattyv0.0.3indirekt
Gogithub.com/phpdave11/gofpdfv1.4.2indirekt
Gogithub.com/pmezard/go-difflibv1.0.0indirekt
Gogithub.com/russross/blackfriday/v2v2.1.0indirekt
Gogithub.com/shurcool/sanitized_anchor_namev1.0.0indirekt
Gogithub.com/spf13/pflagv1.0.5indirekt
Gogolang.org/x/expv0.0.0-20200224162631-6cc2880d07d6indirekt
Gogolang.org/x/imagev0.25.0indirekt
Gogolang.org/x/sysv0.30.0indirekt
Gogolang.org/x/textv0.23.0indirekt
Gogopkg.in/yaml.v2v2.4.0indirekt
Abhängigkeits-Advisories 4

Dieses Repository veröffentlicht kein vom Index auflösbares Paket, daher wurde sein eigener Abhängigkeitsgraph bewertet – 34 Pakete, darunter auch Entwicklungs- und Test-Pins, die nie ausgeliefert werden: 4 tragen bekannte Advisories, davon 1 direkte.

PaketVersionBeziehungSchweregradAdvisoriesBehoben in
golang.org/x/imagev0.25.0indirekthoch100.43.0
github.com/ulikunitz/xzv0.5.10direktmittel20.5.15
golang.org/x/sysv0.30.0indirektunbekannt10.44.0
golang.org/x/textv0.23.0indirektunbekannt10.39.0

Ein Advisory bedeutet, dass die im Abhängigkeitsgraphen erfasste Version in den betroffenen Bereich eines Advisories fällt. Erreichbarkeit wird nicht analysiert, und der Graph enthält Entwicklungs- und Test-Pins — ein Fund kann das Werkzeug betreffen und nicht die ausgelieferte Software.

JSON-Rohbericht maschinenlesbar
{
  "data": {
    "repo": {
      "topics": [
        "phylogeny",
        "alignment",
        "phylip",
        "fasta",
        "phylip-alignment",
        "nexus"
      ],
      "is_fork": false,
      "size_kb": 2817,
      "has_wiki": true,
      "homepage": "https://research.pasteur.fr/en/software/goalign-gotree/",
      "languages": {
        "Go": 907243,
        "Shell": 143133,
        "Makefile": 1846
      },
      "pushed_at": "2026-07-15T14:46:26Z",
      "created_at": "2016-08-24T13:16:06Z",
      "owner_type": "Organization",
      "updated_at": "2026-07-15T15:41:34Z",
      "description": "Goalign : a set of command line tools and an API to manipulate multiple sequence alignments.",
      "is_archived": false,
      "is_disabled": false,
      "license_spdx": "GPL-2.0",
      "default_branch": "master",
      "license_spdx_raw": "GPL-2.0",
      "primary_language": "Go",
      "significant_languages": [
        "Go",
        "Shell"
      ]
    },
    "owner": {
      "blog": null,
      "name": "Evolutionary Bioinformatics",
      "type": "Organization",
      "login": "evolbioinfo",
      "company": null,
      "location": "Paris, France",
      "followers": 50,
      "avatar_url": "https://avatars.githubusercontent.com/u/25950370?v=4",
      "created_at": "2017-02-22T08:56:58Z",
      "is_verified": null,
      "public_repos": 30,
      "account_age_days": 3437
    },
    "license": {
      "state": "standard",
      "spdx_id": "GPL-2.0",
      "raw_spdx": "GPL-2.0",
      "file_present": true,
      "scorecard_found": true,
      "profile_has_license": true
    },
    "activity": {
      "releases": [
        {
          "tag": "v0.4.1",
          "kind": "patch",
          "published_at": "2026-07-15T15:10:34Z"
        },
        {
          "tag": "v0.4.0",
          "kind": "minor",
          "published_at": "2025-12-15T13:58:12Z"
        },
        {
          "tag": "v0.3.9",
          "kind": "patch",
          "published_at": "2025-07-22T09:33:03Z"
        },
        {
          "tag": "v0.3.8",
          "kind": "patch",
          "published_at": "2025-06-01T16:42:22Z"
        },
        {
          "tag": "v0.3.7",
          "kind": "patch",
          "published_at": "2023-11-14T13:40:22Z"
        },
        {
          "tag": "v0.3.6",
          "kind": "patch",
          "published_at": "2022-12-09T10:57:02Z"
        },
        {
          "tag": "v0.3.6a",
          "kind": "other",
          "published_at": "2022-06-29T09:15:23Z"
        },
        {
          "tag": "v0.3.5",
          "kind": "patch",
          "published_at": "2021-09-07T08:44:14Z"
        },
        {
          "tag": "v0.3.4",
          "kind": "patch",
          "published_at": "2021-05-11T12:44:52Z"
        },
        {
          "tag": "v0.3.4a",
          "kind": "other",
          "published_at": "2021-04-29T13:06:45Z"
        },
        {
          "tag": "v0.3.3f",
          "kind": "other",
          "published_at": "2021-01-15T14:21:00Z"
        },
        {
          "tag": "v0.3.3e",
          "kind": "other",
          "published_at": "2021-01-06T21:37:08Z"
        },
        {
          "tag": "v0.3.3d",
          "kind": "other",
          "published_at": "2021-01-05T10:27:16Z"
        },
        {
          "tag": "v0.3.3c",
          "kind": "other",
          "published_at": "2020-06-02T09:11:04Z"
        },
        {
          "tag": "v0.3.3b",
          "kind": "other",
          "published_at": "2020-04-30T08:12:31Z"
        },
        {
          "tag": "v0.3.3a",
          "kind": "other",
          "published_at": "2020-04-27T10:48:03Z"
        },
        {
          "tag": "v0.3.2",
          "kind": "patch",
          "published_at": "2020-02-25T13:38:42Z"
        },
        {
          "tag": "v0.3.1",
          "kind": "patch",
          "published_at": "2019-09-30T14:26:53Z"
        },
        {
          "tag": "v0.3.1-alpha2",
          "kind": "prerelease",
          "published_at": "2019-05-06T09:49:06Z"
        },
        {
          "tag": "v0.3.1-alpha",
          "kind": "prerelease",
          "published_at": "2019-04-01T13:33:54Z"
        },
        {
          "tag": "v0.3.0",
          "kind": "minor",
          "published_at": "2019-03-12T13:25:37Z"
        },
        {
          "tag": "v0.3.0-alpha5",
          "kind": "prerelease",
          "published_at": "2018-12-21T14:34:07Z"
        },
        {
          "tag": "v0.3.0-alpha",
          "kind": "prerelease",
          "published_at": "2018-10-11T09:22:25Z"
        },
        {
          "tag": "v0.2.9",
          "kind": "patch",
          "published_at": "2018-07-04T13:57:27Z"
        },
        {
          "tag": "v0.2.8",
          "kind": "patch",
          "published_at": "2018-05-14T10:46:30Z"
        },
        {
          "tag": "v0.2.7",
          "kind": "patch",
          "published_at": "2018-04-17T11:28:39Z"
        },
        {
          "tag": "v0.2.7a",
          "kind": "other",
          "published_at": "2018-03-13T14:11:57Z"
        },
        {
          "tag": "v0.2.6",
          "kind": "patch",
          "published_at": "2018-02-06T16:22:19Z"
        },
        {
          "tag": "v0.2.6b",
          "kind": "other",
          "published_at": "2018-01-11T15:15:06Z"
        },
        {
          "tag": "v0.2.5",
          "kind": "patch",
          "published_at": "2018-01-09T12:48:22Z"
        },
        {
          "tag": "v0.2.4",
          "kind": "patch",
          "published_at": "2018-01-08T16:34:26Z"
        },
        {
          "tag": "v0.2.4a",
          "kind": "other",
          "published_at": "2017-11-15T13:43:49Z"
        },
        {
          "tag": "v0.2.3",
          "kind": "patch",
          "published_at": "2017-11-06T10:36:24Z"
        },
        {
          "tag": "v0.2.3b",
          "kind": "other",
          "published_at": "2017-09-26T15:54:39Z"
        },
        {
          "tag": "v0.2.3a",
          "kind": "other",
          "published_at": "2017-07-06T13:27:57Z"
        },
        {
          "tag": "v0.2.2",
          "kind": "patch",
          "published_at": "2017-07-03T11:55:08Z"
        },
        {
          "tag": "v0.2.1",
          "kind": "patch",
          "published_at": "2017-06-20T09:26:41Z"
        },
        {
          "tag": "v0.2.0",
          "kind": "minor",
          "published_at": "2017-06-09T13:13:19Z"
        },
        {
          "tag": "v0.1.10",
          "kind": "patch",
          "published_at": "2017-04-14T10:02:26Z"
        },
        {
          "tag": "v0.1.9",
          "kind": "patch",
          "published_at": "2017-04-07T09:28:46Z"
        },
        {
          "tag": "v0.1.9-a",
          "kind": "prerelease",
          "published_at": "2017-04-04T15:12:07Z"
        },
        {
          "tag": "v0.1.8",
          "kind": "patch",
          "published_at": "2017-03-27T10:02:11Z"
        },
        {
          "tag": "v0.1.7",
          "kind": "patch",
          "published_at": "2017-03-15T11:35:14Z"
        },
        {
          "tag": "v0.1.6",
          "kind": "patch",
          "published_at": "2017-03-01T08:33:59Z"
        },
        {
          "tag": "v0.1.5",
          "kind": "patch",
          "published_at": "2017-02-22T09:49:05Z"
        },
        {
          "tag": "v0.1.4",
          "kind": "patch",
          "published_at": "2017-02-13T11:31:37Z"
        },
        {
          "tag": "v0.1.3",
          "kind": "patch",
          "published_at": "2017-01-30T16:17:14Z"
        },
        {
          "tag": "v0.1.2",
          "kind": "patch",
          "published_at": "2016-11-22T09:34:25Z"
        },
        {
          "tag": "v0.1.1",
          "kind": "patch",
          "published_at": "2016-10-14T12:47:15Z"
        }
      ],
      "recent_commits": [
        {
          "oid": "22f17ac1fbab5aea137de44ebf49969a8ace3c3a",
          "body": null,
          "is_bot": false,
          "headline": "Updated convertgff doc",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-07-10T09:56:53Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "da7af4cf60b98ed707d0ba1124804bbcf8768507",
          "body": null,
          "is_bot": false,
          "headline": "Added documentation for command goalign convertgff",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-07-08T18:04:40Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6688adbc24429e3815b3e6a9e6579f7326a06129",
          "body": null,
          "is_bot": false,
          "headline": "Added command goalign convertgff",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-07-08T18:01:38Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "88c90b28fd545c195b27f37c01422b8a630541f6",
          "body": "…uts DNA, or LG as the first value #20",
          "is_bot": false,
          "headline": "Corrected partition output in goalign concat --partition (it now outp…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-03-27T13:44:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0a46be2be1c1e4c6cf31fa7a91c80465a5a14a8a",
          "body": null,
          "is_bot": false,
          "headline": "Updatde test file for goalign concat --out-partition #20",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-03-16T10:44:24Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7c7444929f928d62d6f3ca6fd3deeaf7e2b4fc7e",
          "body": null,
          "is_bot": false,
          "headline": "Added option --out-partition to goalign concat #20",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-03-16T10:40:51Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "644c0453f53924fe235c121938e89247659b74a7",
          "body": null,
          "is_bot": false,
          "headline": "Added option --log to goalign mutate gaps",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-02-19T12:44:50Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f21b6cf2e69b684edb29f90b375f6610c164ad34",
          "body": null,
          "is_bot": false,
          "headline": "added --log option to recomb command",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-02-12T08:50:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "95623b2d9b0bb43d5560fce492dac8b87117e158",
          "body": "…d (with the file...)",
          "is_bot": false,
          "headline": "Added -l 0 to goalign subseq to extract subsequence from -s to the en…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-01-15T12:55:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cd404d7591972ed33378c764736a49f9865e9757",
          "body": null,
          "is_bot": false,
          "headline": "Added -l 0 to goalign subseq to extract subsequence from -s to the end",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-01-13T12:40:37Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4b1120561bc8837d4870407aa41cb9c524a3bf64",
          "body": "…roach",
          "is_bot": false,
          "headline": "Upudated random number generator with seed: using the recommended app…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-01-09T16:38:27Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "217177685899be793a543c91a0dc29099fa178da",
          "body": null,
          "is_bot": false,
          "headline": "Added option --char 'LOWER|GAPS|N' to command goalign clean sites #19",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-01-08T10:42:39Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3b32f6731f2e8ae2ffa049e612f6c426f9b4d72c",
          "body": null,
          "is_bot": false,
          "headline": "Updated doc #18",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-19T16:05:10Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "89b24260e782ab2ea06280866da473e779bab6fe",
          "body": "…emove-gaps #18",
          "is_bot": false,
          "headline": "Added option to remove gap only sites after subet: goalign subset --r…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-19T15:56:23Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "eb96cc85e88bb48e28a4df1dd7f2dd0ab90215c7",
          "body": null,
          "is_bot": false,
          "headline": "Updated doc got goalign stats mutations list --codon",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-15T14:04:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "04458f061a16e002a74894e38a0483a60da4730f",
          "body": null,
          "is_bot": false,
          "headline": "Temporary setting to revert to old random seed handling",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-11T20:18:40Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "50ce9cfcb21abd4afeb8fbfc15549850eebf13d7",
          "body": null,
          "is_bot": false,
          "headline": "Updated to go 1.24.11",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-11T14:57:56Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c014c0c81acf4297686bc68bbb2f4b5eb01a3869",
          "body": null,
          "is_bot": false,
          "headline": "Added doc for simplot",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-11T10:57:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f1393aa8050d82a9e739c682d74af57421f495ad",
          "body": null,
          "is_bot": false,
          "headline": "Updated README",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-11T10:03:14Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "75129b02bb4605ed474d99c87b8c759257d62f62",
          "body": null,
          "is_bot": false,
          "headline": "UPdated conda badge",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-11T09:56:54Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a085175275759f9d09b52b2adb5804052f02a159",
          "body": null,
          "is_bot": false,
          "headline": "Updated color palette",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-09T14:38:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0abef27e7e4dd883cb6cc07e8cf62a25712732df",
          "body": null,
          "is_bot": false,
          "headline": "Removed logs in simplot image",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-06T21:54:03Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "24204c7adeb13169a810ca9cde188593d921fd0b",
          "body": null,
          "is_bot": false,
          "headline": "Corrected check for group name separator in simplot command",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-06T21:40:00Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a8b149b52b985dc4c699b2fa3a9e8b76b9f5353b",
          "body": null,
          "is_bot": false,
          "headline": "Updated simplot by groups extracted from sequence name",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-05T20:24:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1173ca51d000b96afe242fa3521dd4d13fbd6acb",
          "body": null,
          "is_bot": false,
          "headline": "go 1.24.11",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-05T19:06:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c161bbc4c57fe7129bca2683c2d0e066e7631204",
          "body": null,
          "is_bot": false,
          "headline": "Updated simplot graphics",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-05T19:05:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b6cf30efa49c016020617dd21af83c614dd5e115",
          "body": null,
          "is_bot": false,
          "headline": "Added image generation for simplot",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-05T15:20:47Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b5fe96f84bce0e6a0ca5cdc6a93fbeb5349eb93c",
          "body": null,
          "is_bot": false,
          "headline": "Added simplot distances",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-05T13:59:23Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d0f3e379f560ef4f03bb685b5c8a96232a9c401a",
          "body": null,
          "is_bot": false,
          "headline": "Catch error with goalign subseq",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-10-23T15:49:12Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a3a0522403ba0f14e0aff3217101946e1d766581",
          "body": "…pecify ali length - length from the end",
          "is_bot": false,
          "headline": "Added option for specifying negative lengths in goalign subseq : to s…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-10-23T15:44:42Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d30c6e70ef52382650f82e53eb6c8f567b6c37d6",
          "body": null,
          "is_bot": false,
          "headline": "Corrected N/X pb in RemoveCharacterSites for goalign clean sites",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-10-20T14:04:50Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c961992976ae477a4bbee3c7e36f12f0239b6305",
          "body": "…ef sequence",
          "is_bot": false,
          "headline": "goalign stats mutations list --codon : Added ref '-' when 3 gaps in r…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-10-13T15:37:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "99ec0638594db014b43f5bfe78381a34cbdc539d",
          "body": null,
          "is_bot": false,
          "headline": "Updated logo",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-10-09T08:07:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d79470bd320daa09031b9fb84cc7adb4440a6f30",
          "body": null,
          "is_bot": false,
          "headline": "Corrected codon comparison in goalign stat mutation list --codon",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-10-02T13:57:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "37eb44c47e92619a7693e77b2218757921f8a977",
          "body": null,
          "is_bot": false,
          "headline": "Added option --codon to goalign stats mutation list",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-10-02T13:45:55Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3d2b2b0ff3e785707c8a931e96bafc5f5eb39a1c",
          "body": null,
          "is_bot": false,
          "headline": "Added goalign reformat stockholm command #15",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-07-18T12:03:24Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "209557e6767c987ec31132eca9148f37c99e8ed5",
          "body": null,
          "is_bot": false,
          "headline": "Updated README",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-06-30T13:40:37Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0d5872b0a001f1e438e170be46f173f534b6f5a5",
          "body": null,
          "is_bot": false,
          "headline": "Added command goalign mutate ambig",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-06-29T16:15:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a168ab4b0f038c25d618931b9b3fecfb9c90d68d",
          "body": null,
          "is_bot": false,
          "headline": "Added option --unaligned to goalign clean seqs",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-06-28T13:59:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "13cb3aa1f022adeecb9ce14a81a02318b20015fb",
          "body": null,
          "is_bot": false,
          "headline": "Added Test for replace stops",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-06-16T20:49:12Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "958b4f9749f77296dded6b6f153049a7f51c2101",
          "body": null,
          "is_bot": false,
          "headline": "Added test for goalign replace stops",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-06-16T20:43:54Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5733077f94b27f8c9c14af0b655fc7c7b3b093c6",
          "body": null,
          "is_bot": false,
          "headline": "Added command `goalign replace stops`",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-06-16T20:37:03Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5ed865a6642eea3ee4e302bff165fca7de230d76",
          "body": "…> ok with warning about stop codon",
          "is_bot": false,
          "headline": "Updated goalign codonalign: if multiple of 3 nucleotides remainings =…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-06-11T16:17:10Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f4a9aaba0c41e1fd188cc906f6514e8d849d8f72",
          "body": "…rning about stop codon",
          "is_bot": false,
          "headline": "Updated goalign codonalign: if 3 nucleotides remainings => ok with wa…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-05-28T12:41:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "44beac3dd81994b66c822fa19e7a4febb3399de0",
          "body": null,
          "is_bot": false,
          "headline": "Added gap=- in nexus output format line #16",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-05-09T09:10:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "dfefef7caf94b88ab3fc1d50a4c6a5d225e09473",
          "body": null,
          "is_bot": false,
          "headline": "Update clustal parser error messages",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-05-07T13:19:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e80c26d6ec1cefbd4520f778a5378c47f422c7ee",
          "body": "…ts with other commands #15",
          "is_bot": false,
          "headline": "Changed option for stockholm format, now -k. The previous had conflic…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-09-17T21:31:57Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "05d8e3804ff55ae0979620423a9a3b90d5644c31",
          "body": null,
          "is_bot": false,
          "headline": "Added support of Stockholm format #15",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-09-17T21:27:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "27d61758af0d4ccc187294258baa08e494b7223f",
          "body": null,
          "is_bot": false,
          "headline": "Added --n-as-gap for command goalign dedup",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-08-20T14:12:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0537492733e1496bb90025f97477c60b716aaabe",
          "body": null,
          "is_bot": false,
          "headline": "added file to build",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-06-07T15:16:40Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "909245616e136283b4fda0aed353b1568cd887db",
          "body": null,
          "is_bot": false,
          "headline": "Corrected docs for commands goalign toupper and goalign tolower",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-05-22T16:31:39Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "264f3b8c0824b5c88b5f498701da61788ad20d2e",
          "body": null,
          "is_bot": false,
          "headline": "Added commands goalign toupper and goalign tolower",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-05-22T16:28:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f5c7c76de941251cca6b79e1f9d239a86b1d3cd5",
          "body": "…input file",
          "is_bot": false,
          "headline": "Added an option to reverse complement only some sequences in a given …",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-04-03T12:51:29Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f75f0b3734d9fc0dc8dc07ccaf55d86ff5d16d8e",
          "body": null,
          "is_bot": false,
          "headline": "Corrected nt index",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-03-24T22:24:38Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b034b00f93df7fdda313e7e2bd3d6b6af3104e47",
          "body": null,
          "is_bot": false,
          "headline": "updated dirichlet generation",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-02-21T15:08:55Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4d1858729f6e7c594f536ead76611088644d6ea7",
          "body": null,
          "is_bot": false,
          "headline": "updated dirichlet generation",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-02-21T15:08:03Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0a0146836c97d67a22055f4a05d6d6ccece696f2",
          "body": null,
          "is_bot": false,
          "headline": "updated dirichlet generation",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-02-21T15:07:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9fb24d662c6c89a84f5f4ab7253053d2eef4a0ea",
          "body": null,
          "is_bot": false,
          "headline": "Updated README",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-01-23T13:36:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8be44a0cc618ad790a42138dd9dd4bd9e4d125c5",
          "body": null,
          "is_bot": false,
          "headline": "Updated go to 1.21.6",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-01-18T15:29:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c13a469379cdea012eef1eb9ac9fcdf7f947f0aa",
          "body": null,
          "is_bot": false,
          "headline": "Added option swap to goalign shuffle recomb",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-12-20T12:47:39Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3eda57669ed6bd88c184693ff92f6699af20dba6",
          "body": null,
          "is_bot": false,
          "headline": "Added option --pos to goalign shuffle swap",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-12-19T22:17:35Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "bdfb55a7e568e3f41e6e87918846dcfa1433319c",
          "body": null,
          "is_bot": false,
          "headline": "Added option --pos to goalign shuffle swap",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-12-19T22:14:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "13b116b03a25052e42172a7f84d36feaa4c5a632",
          "body": null,
          "is_bot": false,
          "headline": "Added option --alphabet to all goalign commands #14",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-14T10:22:00Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3d96af9eaf60599ee05cd3ffcae1b6622351724c",
          "body": null,
          "is_bot": false,
          "headline": "Updated doc for goalign concat -l",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-06T13:58:10Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5284c056db988b3fa6e63c9d26d70114ffe786a1",
          "body": "…tes of all input alignments in the concatenated alignment",
          "is_bot": false,
          "headline": "Added option -l to goalign concat to keep information of the coordina…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-06T13:54:55Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ea985a7e9203c3579b3151a1e89f8b6f96afdeb3",
          "body": null,
          "is_bot": false,
          "headline": "Added citation to mtrev matrix",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-03T09:34:13Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "538b9f93381e42dce73b25ba5d11e8b7c824d6db",
          "body": null,
          "is_bot": false,
          "headline": "Updated LG",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-01T21:21:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ece65af969b9d382d3683c57a21748ff4fe229cb",
          "body": null,
          "is_bot": false,
          "headline": "Added AB Matrix: Antibody model",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-01T20:58:12Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "103ea5b7d23599714b32dc4bfcf785f811354b8f",
          "body": null,
          "is_bot": false,
          "headline": "Corrected test.sh",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-10-14T12:16:03Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7221d2ee703457b82f0c5061a498235aade186bb",
          "body": null,
          "is_bot": false,
          "headline": "Corrected comment in posfile",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-10-14T12:13:24Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ce2930fca5e42f985c90dc2bef6c6f67f644800a",
          "body": null,
          "is_bot": false,
          "headline": "Authorize comments in posfile of command goalign replace",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-10-14T10:21:50Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e4402603f14b5e10c54cd1ec38d6dce0710487c0",
          "body": null,
          "is_bot": false,
          "headline": "Updated docs for replace",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-10-14T09:56:53Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "18217b2290bd932b4534d757d72bb97ac4a312d8",
          "body": "…acters at specific positions of specific sequences in an input alignment",
          "is_bot": false,
          "headline": "Added --posfile to command goalign replace : to replace specific char…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-10-14T09:52:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8adbb889aa850798d19ef968f0bd33db130709d1",
          "body": "…slate)",
          "is_bot": false,
          "headline": "Added --ref-seq to goalign translate and goalign extract (with --tran…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-09-12T16:11:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "fcecb09f9d43d0686ea1a2e916df9c2f7ad65e02",
          "body": null,
          "is_bot": false,
          "headline": "Added function GetSequenceIdByName",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-09-06T11:30:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "650e9c17522878bc1c74087bb617a15ed540aa57",
          "body": null,
          "is_bot": false,
          "headline": "Corrected complement map",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-09-05T15:15:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "324a6116d602be63fe7cd8f995db7f63eb1b28ed",
          "body": null,
          "is_bot": false,
          "headline": "goalign extract can now extract - strand sequences",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-09-05T15:08:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f1cd6314b6ded35a61a08e7e4c9a9693762ec586",
          "body": null,
          "is_bot": false,
          "headline": "Updated golang.org/x/sys",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-05-31T14:58:17Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3cfac2a652b17da2888267febc111386617cc03c",
          "body": "…--char #5",
          "is_bot": false,
          "headline": "added option goalign clean sites --reverse, and multi characters for …",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-04-17T09:31:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "84b0f6c0858116bcedadac7c4a6386d96e28b01e",
          "body": null,
          "is_bot": false,
          "headline": "Updated test",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-01-25T16:59:50Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9ac148653d1914ad31e1399490366a59773c7821",
          "body": "…nd seq have both only gaps",
          "is_bot": false,
          "headline": "goalign stats mutations list --aa does not report mutation when ref a…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-01-25T16:59:29Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9c558e8a6c6f5be164faabfb21b6f5de39ed295a",
          "body": null,
          "is_bot": false,
          "headline": "Added comment /doc",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-01-25T16:46:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "fdb94f4898a25daeb6da3898fd014260082c41cb",
          "body": null,
          "is_bot": false,
          "headline": "Added --aa option to goalign stats mutations list",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-01-25T16:36:22Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "edccf2aac3062f14dd121a2b40c47c460a61f7bc",
          "body": null,
          "is_bot": false,
          "headline": "Removed temp test file",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-01-12T10:46:55Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c8a5dcdc916a932a4a34d7e8ee3ee7cea3ebdef6",
          "body": null,
          "is_bot": false,
          "headline": "Merge Makefile",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-01-12T10:03:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "24ab3b5ee2078c81a8f929d3b7b32ceb26f42384",
          "body": null,
          "is_bot": false,
          "headline": "Modified bin names in deploy",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-01-12T09:59:16Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0957126b28cf194ed25653028d7dfb5518aa61b0",
          "body": null,
          "is_bot": false,
          "headline": "Updated Makefile",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-01-02T12:38:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9382b53644f6d6ddb681ab5e73f0f647f26c1e00",
          "body": "…) from an alignment taking coordinates from a gff file",
          "is_bot": false,
          "headline": "Added option --gff to extract : Extracts CDS sequences (with splicing…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2022-11-17T10:28:46Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "845e6fa43b88bcbb322057b108f750fd613460aa",
          "body": null,
          "is_bot": false,
          "headline": "Added command goalign mutations list",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2022-11-08T21:56:13Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e4c924bdb42d247c012d0f3081acccad1b0656e5",
          "body": null,
          "is_bot": false,
          "headline": "Updated test for goalign mask --pos",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2022-11-08T15:07:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0ef138bb727df6df6a4e3c40e5294058d61839a0",
          "body": "…an input alignment",
          "is_bot": false,
          "headline": "Added option --pos to goalign mask, to mask a list of positions from …",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2022-11-08T14:54:30Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "59acb26d2e7ab54afef5536edd993c06b3b37e43",
          "body": null,
          "is_bot": false,
          "headline": "Updated to go 1.19",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2022-11-08T10:39:37Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "343ea08f7a3d7300f79f1934f924833da6558bb9",
          "body": null,
          "is_bot": false,
          "headline": "Updated cobra/completion README",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2022-09-22T13:41:43Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5a351d2d461f612a8a34137ed2ad1461f6bd8509",
          "body": null,
          "is_bot": false,
          "headline": "Updated cobra/completion",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2022-09-22T13:40:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d944d185e01d106c8ea4ea4341e188906cf16c5a",
          "body": "…positions",
          "is_bot": false,
          "headline": "Added option --positions-rm to golign clean sites, to output removed …",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2022-07-13T10:29:24Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e85b6507a1f32aac8b202e5e92d0e2b7fff04bb4",
          "body": null,
          "is_bot": false,
          "headline": "Update README.md",
          "author_name": "fredericlemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2022-07-08T13:55:08Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5e50b4a6f9b695158db4f66f527697e802420c64",
          "body": null,
          "is_bot": false,
          "headline": "Update README.md",
          "author_name": "fredericlemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2022-07-08T13:52:22Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "171fccb9651c6884b62d5a0b31842941d5e68d75",
          "body": null,
          "is_bot": false,
          "headline": "Added option --no-ref to goalign mask",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2022-06-30T10:57:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "29e8e6774e1d2e9f0ae223393c66bbb61407a664",
          "body": null,
          "is_bot": false,
          "headline": "Added option goalign mask --no-gaps",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2022-06-30T10:00:05Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "15b0c11c48d47f543318be34366b28c8dc30def1",
          "body": null,
          "is_bot": false,
          "headline": "updated go.mod, go.sum",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2022-06-29T09:12:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        }
      ],
      "releases_count": 49,
      "commits_last_year": 35,
      "latest_release_at": "2026-07-15T15:10:34Z",
      "latest_release_tag": "v0.4.1",
      "releases_from_tags": false,
      "days_since_last_push": 7,
      "active_weeks_last_year": 14,
      "days_since_latest_release": 7,
      "mean_days_between_releases": 211.5
    },
    "community": {
      "has_readme": true,
      "has_license": true,
      "has_description": true,
      "has_contributing": false,
      "health_percentage": 37,
      "has_issue_template": false,
      "has_code_of_conduct": false,
      "has_pull_request_template": false
    },
    "ecosystem": {
      "packages": [
        {
          "name": "github.com/evolbioinfo/goalign",
          "exists": true,
          "license": null,
          "keywords": [],
          "ecosystem": "go",
          "matches_repo": true,
          "registry_url": "https://pkg.go.dev/github.com/evolbioinfo/goalign",
          "is_deprecated": false,
          "latest_version": "v0.4.1",
          "repository_url": "https://github.com/evolbioinfo/goalign",
          "versions_count": 41,
          "total_downloads": null,
          "dependents_count": null,
          "deprecation_note": null,
          "maintainers_count": null,
          "monthly_downloads": null,
          "first_published_at": null,
          "latest_published_at": "2026-07-10T09:56:53Z",
          "latest_version_yanked": null,
          "days_since_latest_publish": 12
        }
      ]
    },
    "popularity": {
      "forks": 8,
      "stars": 90,
      "watchers": 11,
      "fork_history": {
        "days": [
          {
            "date": "2020-04-07",
            "count": 1
          },
          {
            "date": "2020-05-14",
            "count": 1
          },
          {
            "date": "2020-11-11",
            "count": 1
          },
          {
            "date": "2021-03-15",
            "count": 1
          },
          {
            "date": "2021-06-28",
            "count": 1
          },
          {
            "date": "2021-08-19",
            "count": 1
          },
          {
            "date": "2022-04-13",
            "count": 1
          },
          {
            "date": "2023-01-31",
            "count": 1
          }
        ],
        "complete": true,
        "collected": 8,
        "total_forks": 8
      },
      "star_history": null,
      "open_issues_and_prs": 0
    },
    "ai_readiness": {
      "has_nix": false,
      "example_dirs": [],
      "has_llms_txt": false,
      "has_dockerfile": false,
      "has_mcp_signal": false,
      "bootstrap_files": [
        "Makefile"
      ],
      "api_schema_files": [],
      "has_devcontainer": false,
      "typecheck_configs": [],
      "toolchain_manifests": [
        "go.mod"
      ],
      "largest_source_bytes": 122666,
      "source_files_sampled": 172,
      "oversized_source_files": 3,
      "agent_instruction_files": [],
      "agent_instruction_max_bytes": null
    },
    "dependencies": {
      "manifests": [
        "go.mod"
      ],
      "advisories": {
        "error": null,
        "scope": "repository_graph",
        "source": "osv",
        "findings": [
          {
            "name": "golang.org/x/image",
            "direct": false,
            "version": "v0.25.0",
            "severity": "high",
            "ecosystem": "go",
            "cvss_score": 7.5,
            "advisory_ids": [
              "GHSA-44p7-9xx4-hf2g",
              "GHSA-q675-qj96-32m9",
              "GO-2026-4815",
              "GO-2026-4961",
              "GO-2026-4962",
              "GO-2026-5031",
              "GO-2026-5032",
              "GO-2026-5061",
              "GO-2026-5062",
              "GO-2026-5066"
            ],
            "fixed_version": "0.43.0",
            "advisory_count": 10,
            "oldest_advisory_days": 118
          },
          {
            "name": "github.com/ulikunitz/xz",
            "direct": true,
            "version": "v0.5.10",
            "severity": "moderate",
            "ecosystem": "go",
            "cvss_score": 5.3,
            "advisory_ids": [
              "GHSA-jc7w-c686-c4v9",
              "GO-2025-3922"
            ],
            "fixed_version": "0.5.15",
            "advisory_count": 2,
            "oldest_advisory_days": 327
          },
          {
            "name": "golang.org/x/sys",
            "direct": false,
            "version": "v0.30.0",
            "severity": "unknown",
            "ecosystem": "go",
            "cvss_score": null,
            "advisory_ids": [
              "GO-2026-5024"
            ],
            "fixed_version": "0.44.0",
            "advisory_count": 1,
            "oldest_advisory_days": 60
          },
          {
            "name": "golang.org/x/text",
            "direct": false,
            "version": "v0.23.0",
            "severity": "unknown",
            "ecosystem": "go",
            "cvss_score": null,
            "advisory_ids": [
              "GO-2026-5970"
            ],
            "fixed_version": "0.39.0",
            "advisory_count": 1,
            "oldest_advisory_days": 7
          }
        ],
        "collected": true,
        "malicious": [],
        "truncated": false,
        "by_severity": {
          "high": 1,
          "unknown": 2,
          "moderate": 1
        },
        "advisory_count": 14,
        "affected_count": 4,
        "assessed_count": 34,
        "malicious_count": 0,
        "assessed_package": null,
        "unassessed_count": 0,
        "direct_affected_count": 1
      },
      "ecosystems": [
        "go"
      ],
      "dependencies": [
        {
          "name": "github.com/armon/go-radix",
          "manifest": "go.mod",
          "ecosystem": "go",
          "version_constraint": "v1.0.0"
        },
        {
          "name": "github.com/fredericlemoine/cobrashell",
          "manifest": "go.mod",
          "ecosystem": "go",
          "version_constraint": "v0.0.0-20180921081141-49c72f93426c"
        },
        {
          "name": "github.com/spf13/cobra",
          "manifest": "go.mod",
          "ecosystem": "go",
          "version_constraint": "v1.5.0"
        },
        {
          "name": "github.com/ulikunitz/xz",
          "manifest": "go.mod",
          "ecosystem": "go",
          "version_constraint": "v0.5.10"
        },
        {
          "name": "gonum.org/v1/gonum",
          "manifest": "go.mod",
          "ecosystem": "go",
          "version_constraint": "v0.16.0"
        },
        {
          "name": "gonum.org/v1/plot",
          "manifest": "go.mod",
          "ecosystem": "go",
          "version_constraint": "v0.16.0"
        }
      ],
      "all_dependencies": {
        "error": null,
        "source": "github-sbom",
        "packages": [
          {
            "name": "github.com/armon/go-radix",
            "direct": true,
            "version": "v1.0.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/fredericlemoine/cobrashell",
            "direct": true,
            "version": "v0.0.0-20180921081141-49c72f93426c",
            "ecosystem": "go"
          },
          {
            "name": "github.com/spf13/cobra",
            "direct": true,
            "version": "v1.5.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/ulikunitz/xz",
            "direct": true,
            "version": "v0.5.10",
            "ecosystem": "go"
          },
          {
            "name": "gonum.org/v1/gonum",
            "direct": true,
            "version": "v0.16.0",
            "ecosystem": "go"
          },
          {
            "name": "gonum.org/v1/plot",
            "direct": true,
            "version": "v0.16.0",
            "ecosystem": "go"
          },
          {
            "name": "codeberg.org/go-fonts/liberation",
            "direct": false,
            "version": "v0.5.0",
            "ecosystem": "go"
          },
          {
            "name": "codeberg.org/go-latex/latex",
            "direct": false,
            "version": "v0.1.0",
            "ecosystem": "go"
          },
          {
            "name": "codeberg.org/go-pdf/fpdf",
            "direct": false,
            "version": "v0.10.0",
            "ecosystem": "go"
          },
          {
            "name": "git.sr.ht/~sbinet/gg",
            "direct": false,
            "version": "v0.6.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/abiosoft/ishell",
            "direct": false,
            "version": "v2.0.0+incompatible",
            "ecosystem": "go"
          },
          {
            "name": "github.com/abiosoft/readline",
            "direct": false,
            "version": "v0.0.0-20180607040430-155bce2042db",
            "ecosystem": "go"
          },
          {
            "name": "github.com/ajstarks/svgo",
            "direct": false,
            "version": "v0.0.0-20211024235047-1546f124cd8b",
            "ecosystem": "go"
          },
          {
            "name": "github.com/campoy/embedmd",
            "direct": false,
            "version": "v1.0.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/cpuguy83/go-md2man/v2",
            "direct": false,
            "version": "v2.0.2",
            "ecosystem": "go"
          },
          {
            "name": "github.com/fatih/color",
            "direct": false,
            "version": "v1.7.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/flynn-archive/go-shlex",
            "direct": false,
            "version": "v0.0.0-20150515145356-3f9db97f8568",
            "ecosystem": "go"
          },
          {
            "name": "github.com/fogleman/gg",
            "direct": false,
            "version": "v1.3.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/go-fonts/liberation",
            "direct": false,
            "version": "v0.1.1",
            "ecosystem": "go"
          },
          {
            "name": "github.com/go-latex/latex",
            "direct": false,
            "version": "v0.0.0-20210118124228-b3d85cf34e07",
            "ecosystem": "go"
          },
          {
            "name": "github.com/golang/freetype",
            "direct": false,
            "version": "v0.0.0-20170609003504-e2365dfdc4a0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/inconshreveable/mousetrap",
            "direct": false,
            "version": "v1.0.1",
            "ecosystem": "go"
          },
          {
            "name": "github.com/mattn/go-colorable",
            "direct": false,
            "version": "v0.0.9",
            "ecosystem": "go"
          },
          {
            "name": "github.com/mattn/go-isatty",
            "direct": false,
            "version": "v0.0.3",
            "ecosystem": "go"
          },
          {
            "name": "github.com/phpdave11/gofpdf",
            "direct": false,
            "version": "v1.4.2",
            "ecosystem": "go"
          },
          {
            "name": "github.com/pmezard/go-difflib",
            "direct": false,
            "version": "v1.0.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/russross/blackfriday/v2",
            "direct": false,
            "version": "v2.1.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/shurcool/sanitized_anchor_name",
            "direct": false,
            "version": "v1.0.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/spf13/pflag",
            "direct": false,
            "version": "v1.0.5",
            "ecosystem": "go"
          },
          {
            "name": "golang.org/x/exp",
            "direct": false,
            "version": "v0.0.0-20200224162631-6cc2880d07d6",
            "ecosystem": "go"
          },
          {
            "name": "golang.org/x/image",
            "direct": false,
            "version": "v0.25.0",
            "ecosystem": "go"
          },
          {
            "name": "golang.org/x/sys",
            "direct": false,
            "version": "v0.30.0",
            "ecosystem": "go"
          },
          {
            "name": "golang.org/x/text",
            "direct": false,
            "version": "v0.23.0",
            "ecosystem": "go"
          },
          {
            "name": "gopkg.in/yaml.v2",
            "direct": false,
            "version": "v2.4.0",
            "ecosystem": "go"
          }
        ],
        "collected": true,
        "truncated": false,
        "total_count": 34,
        "direct_count": 6,
        "indirect_count": 28
      }
    },
    "maintainership": {
      "issues": {
        "open_prs": 0,
        "merged_prs": 2,
        "open_issues": 0,
        "closed_ratio": 1,
        "closed_issues": 18,
        "closed_unmerged_prs": 0
      },
      "bus_factor": 1,
      "bot_contributors": 0,
      "top_contributors": [
        {
          "type": "User",
          "login": "fredericlemoine",
          "commits": 688,
          "avatar_url": "https://avatars.githubusercontent.com/u/16349382?v=4"
        },
        {
          "type": "User",
          "login": "lucblassel",
          "commits": 3,
          "avatar_url": "https://avatars.githubusercontent.com/u/30524113?v=4"
        }
      ],
      "contributors_sampled": 2,
      "top_contributor_share": 0.996
    },
    "quality_signals": {
      "has_ci": true,
      "has_tests": true,
      "ci_workflows": [
        "go.yml"
      ],
      "has_docs_dir": true,
      "linter_configs": [],
      "has_editorconfig": false,
      "has_linter_config": false,
      "has_precommit_config": false
    },
    "security_signals": {
      "lockfiles": [
        "go.sum"
      ],
      "scorecard": {
        "checks": [
          {
            "name": "Binary-Artifacts",
            "score": 10,
            "reason": "no binaries found in the repo",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
          },
          {
            "name": "Branch-Protection",
            "score": null,
            "reason": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
          },
          {
            "name": "CI-Tests",
            "score": null,
            "reason": "no pull request found",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
          },
          {
            "name": "CII-Best-Practices",
            "score": 0,
            "reason": "no effort to earn an OpenSSF best practices badge detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
          },
          {
            "name": "Code-Review",
            "score": 0,
            "reason": "Found 0/30 approved changesets -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
          },
          {
            "name": "Contributors",
            "score": 3,
            "reason": "project has 1 contributing companies or organizations -- score normalized to 3",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
          },
          {
            "name": "Dangerous-Workflow",
            "score": 10,
            "reason": "no dangerous workflow patterns detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
          },
          {
            "name": "Dependency-Update-Tool",
            "score": 0,
            "reason": "no update tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
          },
          {
            "name": "Fuzzing",
            "score": 0,
            "reason": "project is not fuzzed",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
          },
          {
            "name": "License",
            "score": 10,
            "reason": "license file detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
          },
          {
            "name": "Maintained",
            "score": 2,
            "reason": "3 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 2",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
          },
          {
            "name": "Packaging",
            "score": null,
            "reason": "packaging workflow not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
          },
          {
            "name": "Pinned-Dependencies",
            "score": 0,
            "reason": "dependency not pinned by hash detected -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
          },
          {
            "name": "SAST",
            "score": 0,
            "reason": "no SAST tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
          },
          {
            "name": "Security-Policy",
            "score": 0,
            "reason": "security policy file not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
          },
          {
            "name": "Signed-Releases",
            "score": 0,
            "reason": "Project has not signed or included provenance with any releases.",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
          },
          {
            "name": "Token-Permissions",
            "score": 0,
            "reason": "detected GitHub workflow tokens with excessive permissions",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
          },
          {
            "name": "Vulnerabilities",
            "score": 0,
            "reason": "11 existing vulnerabilities detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
          }
        ],
        "commit": "22f17ac1fbab5aea137de44ebf49969a8ace3c3a",
        "ran_at": "2026-07-22T15:27:36Z",
        "aggregate_score": 2.5,
        "scorecard_version": "v5.5.0"
      },
      "has_codeql_workflow": false,
      "has_security_policy": false,
      "has_dependabot_config": false
    },
    "contribution_flow": {
      "collected": true,
      "ci_last_run_at": "2026-07-10T09:57:45Z",
      "oldest_open_prs": [],
      "last_merged_pr_at": "2022-04-13T16:31:00Z",
      "ci_last_conclusion": "SUCCESS",
      "oldest_open_issues": []
    }
  },
  "config": {
    "disabled_metrics": [],
    "disabled_categories": [],
    "disabled_components": {}
  },
  "source": {
    "url": "https://github.com/evolbioinfo/goalign",
    "host": "github.com",
    "name": "goalign",
    "owner": "evolbioinfo"
  },
  "metrics": {
    "overall": {
      "key": "overall",
      "band": "moderate",
      "name": "Overall health",
      "note": null,
      "notes": [],
      "value": 59,
      "inputs": {
        "security": 35,
        "vitality": 68,
        "community": 47,
        "governance": 62,
        "engineering": 76
      },
      "components": []
    },
    "categories": [
      {
        "key": "vitality",
        "band": "moderate",
        "name": "Vitality",
        "value": 68,
        "weight": 0.22,
        "metrics": [
          {
            "key": "development_activity",
            "band": "moderate",
            "name": "Development activity",
            "note": null,
            "notes": [],
            "value": 62,
            "inputs": {
              "commits_last_year": 35,
              "human_commit_share": 1,
              "days_since_last_push": 7,
              "active_weeks_last_year": 14
            },
            "components": [
              {
                "key": "push_recency",
                "name": "Push recency",
                "detail": "last push 7 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "push_recency",
                    "params": {
                      "days": 7
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_cadence",
                "name": "Commit cadence",
                "detail": "14/52 weeks with commits",
                "points": 9.7,
                "status": "partial",
                "details": [
                  {
                    "code": "commit_cadence_weeks",
                    "params": {
                      "weeks": 14
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_volume",
                "name": "Commit volume",
                "detail": "35 commits in the last year",
                "points": 14,
                "status": "partial",
                "details": [
                  {
                    "code": "commits_last_year",
                    "params": {
                      "count": 35
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "openssf_scorecard_maintained",
                "name": "OpenSSF Scorecard: Maintained",
                "detail": "3 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 2",
                "points": 2,
                "status": "partial",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "release_discipline",
            "band": "good",
            "name": "Release discipline",
            "note": null,
            "notes": [],
            "value": 76,
            "inputs": {
              "releases_count": 49,
              "latest_release_tag": "v0.4.1",
              "releases_from_tags": false,
              "days_since_latest_release": 7,
              "mean_days_between_releases": 211.5
            },
            "components": [
              {
                "key": "ships_releases",
                "name": "Ships releases",
                "detail": "49 releases published",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "releases_published",
                    "params": {
                      "count": 49
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "release_recency",
                "name": "Release recency",
                "detail": "latest release 7 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "release_recency",
                    "params": {
                      "days": 7
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "release_cadence",
                "name": "Release cadence",
                "detail": "a release every ~211.5 days",
                "points": 12.6,
                "status": "partial",
                "details": [
                  {
                    "code": "release_cadence",
                    "params": {
                      "gap": 211.5
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "openssf_scorecard_signed_releases",
                "name": "OpenSSF Scorecard: Signed-Releases",
                "detail": "Project has not signed or included provenance with any releases.",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "abandonment",
            "band": "excellent",
            "name": "Abandonment",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "cap": null,
              "state": "maintained",
              "guards": [],
              "signals": [],
              "red_flag": false,
              "multiplier_pct": 100,
              "declared_reason": null,
              "unverified_reason": null,
              "unanswered_open_prs": null,
              "unanswered_open_issues": null,
              "days_since_last_merged_pr": null,
              "days_since_last_human_commit": 12,
              "days_since_last_human_commit_is_floor": false
            },
            "components": [
              {
                "key": "project_is_still_maintained",
                "name": "Project is still maintained",
                "detail": "last human commit 12 days ago",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "abandonment_maintained",
                    "params": {
                      "days": 12
                    }
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Is the project alive — is code being written and are releases shipping?"
      },
      {
        "key": "community",
        "band": "at_risk",
        "name": "Community & Adoption",
        "value": 47,
        "weight": 0.18,
        "metrics": [
          {
            "key": "popularity",
            "band": "at_risk",
            "name": "Popularity & adoption",
            "note": null,
            "notes": [],
            "value": 44,
            "inputs": {
              "forks": 8,
              "stars": 90,
              "watchers": 11,
              "growth_state": "unverified",
              "growth_factor_pct": 100,
              "growth_unverified_reason": "no_history"
            },
            "components": [
              {
                "key": "stars",
                "name": "Stars",
                "detail": "90 stars",
                "points": 31.6,
                "status": "partial",
                "details": [
                  {
                    "code": "stars",
                    "params": {
                      "count": 90
                    }
                  }
                ],
                "max_points": 60
              },
              {
                "key": "forks",
                "name": "Forks",
                "detail": "8 forks",
                "points": 7,
                "status": "partial",
                "details": [
                  {
                    "code": "forks",
                    "params": {
                      "count": 8
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "watchers",
                "name": "Watchers",
                "detail": "11 watchers",
                "points": 5.6,
                "status": "partial",
                "details": [
                  {
                    "code": "watchers",
                    "params": {
                      "count": 11
                    }
                  }
                ],
                "max_points": 15
              }
            ]
          },
          {
            "key": "community_health",
            "band": "moderate",
            "name": "Community health",
            "note": null,
            "notes": [],
            "value": 50,
            "inputs": {
              "has_readme": true,
              "has_license": true,
              "has_contributing": false,
              "has_issue_template": false,
              "has_code_of_conduct": false,
              "has_pull_request_template": false
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 22.5,
                "status": "met",
                "details": [],
                "max_points": 22.5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "recognized license (GPL-2.0)",
                "points": 22.5,
                "status": "met",
                "details": [
                  {
                    "code": "license_standard",
                    "params": {}
                  },
                  {
                    "code": "license_spdx",
                    "params": {
                      "spdx": "GPL-2.0"
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributing_guide",
                "name": "CONTRIBUTING guide",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 18
              },
              {
                "key": "code_of_conduct",
                "name": "Code of conduct",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 13.5
              },
              {
                "key": "issue_template",
                "name": "Issue template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.2
              },
              {
                "key": "pr_template",
                "name": "PR template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.3
              }
            ]
          }
        ],
        "description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
      },
      {
        "key": "governance",
        "band": "moderate",
        "name": "Sustainability & Governance",
        "value": 62,
        "weight": 0.24,
        "metrics": [
          {
            "key": "maintainer_resilience",
            "band": "critical",
            "name": "Maintainer resilience (bus factor)",
            "note": null,
            "notes": [],
            "value": 15,
            "inputs": {
              "bus_factor": 1,
              "contributors_sampled": 2,
              "top_contributor_share": 0.996
            },
            "components": [
              {
                "key": "bus_factor",
                "name": "Bus factor",
                "detail": "1 contributor(s) cover half of all commits",
                "points": 9,
                "status": "partial",
                "details": [
                  {
                    "code": "bus_factor",
                    "params": {
                      "count": 1
                    }
                  }
                ],
                "max_points": 54
              },
              {
                "key": "commit_distribution",
                "name": "Commit distribution",
                "detail": "top contributor authored 100% of commits",
                "points": 0.1,
                "status": "partial",
                "details": [
                  {
                    "code": "top_contributor_share",
                    "params": {
                      "share": 100
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributor_breadth",
                "name": "Contributor breadth",
                "detail": "2 contributors",
                "points": 2.7,
                "status": "partial",
                "details": [
                  {
                    "code": "contributors_sampled",
                    "params": {
                      "count": 2
                    }
                  }
                ],
                "max_points": 13.5
              },
              {
                "key": "openssf_scorecard_contributors",
                "name": "OpenSSF Scorecard: Contributors",
                "detail": "project has 1 contributing companies or organizations -- score normalized to 3",
                "points": 3,
                "status": "partial",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "responsiveness",
            "band": "excellent",
            "name": "Issue & PR responsiveness",
            "note": null,
            "notes": [],
            "value": 85,
            "inputs": {
              "merged_prs": 2,
              "open_issues": 0,
              "closed_issues": 18,
              "issue_closed_ratio": 1,
              "closed_unmerged_prs": 0
            },
            "components": [
              {
                "key": "issue_resolution",
                "name": "Issue resolution",
                "detail": "100% of issues closed",
                "points": 46.8,
                "status": "met",
                "details": [
                  {
                    "code": "issues_closed_share",
                    "params": {
                      "share": 100
                    }
                  }
                ],
                "max_points": 46.75
              },
              {
                "key": "pr_acceptance",
                "name": "PR acceptance",
                "detail": "2/2 decided PRs merged",
                "points": 38.2,
                "status": "met",
                "details": [
                  {
                    "code": "decided_prs_merged",
                    "params": {
                      "merged": 2,
                      "decided": 2
                    }
                  }
                ],
                "max_points": 38.25
              },
              {
                "key": "openssf_scorecard_code_review",
                "name": "OpenSSF Scorecard: Code-Review",
                "detail": "Found 0/30 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              }
            ]
          },
          {
            "key": "stewardship",
            "band": "moderate",
            "name": "Ownership & stewardship",
            "note": null,
            "notes": [],
            "value": 65,
            "inputs": {
              "followers": 50,
              "owner_type": "Organization",
              "is_verified": null,
              "owner_login": "evolbioinfo",
              "public_repos": 30,
              "account_age_days": 3437
            },
            "components": [
              {
                "key": "ownership_backing",
                "name": "Ownership backing",
                "detail": "organization-owned",
                "points": 30,
                "status": "met",
                "details": [
                  {
                    "code": "owner_organization",
                    "params": {}
                  }
                ],
                "max_points": 30
              },
              {
                "key": "verified_domain",
                "name": "Verified domain",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "owner_reach",
                "name": "Owner reach",
                "detail": "50 followers of evolbioinfo",
                "points": 12.3,
                "status": "partial",
                "details": [
                  {
                    "code": "owner_followers",
                    "params": {
                      "count": 50,
                      "login": "evolbioinfo"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "track_record",
                "name": "Track record",
                "detail": "30 public repos, account ~9 yr old",
                "points": 22.9,
                "status": "partial",
                "details": [
                  {
                    "code": "public_repos",
                    "params": {
                      "count": 30
                    }
                  },
                  {
                    "code": "account_age_years",
                    "params": {
                      "years": 9
                    }
                  }
                ],
                "max_points": 25
              }
            ]
          },
          {
            "key": "package_maintenance",
            "band": "excellent",
            "name": "Package maintenance",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "packages": [
                "github.com/evolbioinfo/goalign"
              ],
              "ecosystems": "go",
              "any_deprecated": false,
              "min_days_since_publish": 12
            },
            "components": [
              {
                "key": "published_resolvable",
                "name": "Published & resolvable",
                "detail": "1 package(s) on go",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "packages_published",
                    "params": {
                      "count": 1,
                      "ecosystems": "go"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "publish_recency",
                "name": "Publish recency",
                "detail": "latest publish 12 days ago",
                "points": 35,
                "status": "met",
                "details": [
                  {
                    "code": "publish_recency",
                    "params": {
                      "days": 12
                    }
                  }
                ],
                "max_points": 35
              },
              {
                "key": "version_history",
                "name": "Version history",
                "detail": "41 published versions",
                "points": 20,
                "status": "met",
                "details": [
                  {
                    "code": "published_versions",
                    "params": {
                      "count": 41
                    }
                  }
                ],
                "max_points": 20
              },
              {
                "key": "not_deprecated",
                "name": "Not deprecated",
                "detail": "active, not deprecated or yanked",
                "points": 20,
                "status": "met",
                "details": [
                  {
                    "code": "package_not_deprecated",
                    "params": {}
                  }
                ],
                "max_points": 20
              }
            ]
          }
        ],
        "description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
      },
      {
        "key": "engineering",
        "band": "good",
        "name": "Engineering Quality",
        "value": 76,
        "weight": 0.2,
        "metrics": [
          {
            "key": "engineering_practices",
            "band": "moderate",
            "name": "Engineering practices",
            "note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: CI-Tests. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "openssf_scorecard_ci_tests"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 60,
            "inputs": {
              "has_ci": true,
              "has_tests": true,
              "has_editorconfig": false,
              "has_linter_config": false,
              "has_precommit_config": false
            },
            "components": [
              {
                "key": "ci_workflows",
                "name": "CI workflows",
                "detail": "1 workflow(s)",
                "points": 24,
                "status": "met",
                "details": [
                  {
                    "code": "ci_workflows",
                    "params": {
                      "count": 1
                    }
                  }
                ],
                "max_points": 24
              },
              {
                "key": "tests_present",
                "name": "Tests present",
                "detail": null,
                "points": 24,
                "status": "met",
                "details": [],
                "max_points": 24
              },
              {
                "key": "linter_config",
                "name": "Linter config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 16
              },
              {
                "key": "pre_commit_hooks",
                "name": "Pre-commit hooks",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 9.6
              },
              {
                "key": "editorconfig",
                "name": ".editorconfig",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.4
              },
              {
                "key": "openssf_scorecard_ci_tests",
                "name": "OpenSSF Scorecard: CI-Tests",
                "detail": "no pull request found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 20
              }
            ]
          },
          {
            "key": "documentation",
            "band": "excellent",
            "name": "Documentation",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "topics": [
                "phylogeny",
                "alignment",
                "phylip",
                "fasta",
                "phylip-alignment",
                "nexus"
              ],
              "has_wiki": true,
              "homepage": "https://research.pasteur.fr/en/software/goalign-gotree/",
              "has_readme": true,
              "has_docs_dir": true,
              "has_description": true
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 30,
                "status": "met",
                "details": [],
                "max_points": 30
              },
              {
                "key": "documentation_directory",
                "name": "Documentation directory",
                "detail": null,
                "points": 25,
                "status": "met",
                "details": [],
                "max_points": 25
              },
              {
                "key": "documentation_homepage_site",
                "name": "Documentation / homepage site",
                "detail": "https://research.pasteur.fr/en/software/goalign-gotree/",
                "points": 15,
                "status": "met",
                "details": [],
                "max_points": 15
              },
              {
                "key": "repository_description",
                "name": "Repository description",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "topics",
                "name": "Topics",
                "detail": "6 topics",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "topics_count",
                    "params": {
                      "count": 6
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "wiki",
                "name": "Wiki",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
      },
      {
        "key": "security",
        "band": "at_risk",
        "name": "Security",
        "value": 35,
        "weight": 0.16,
        "metrics": [
          {
            "key": "security_posture",
            "band": "critical",
            "name": "Security posture",
            "note": "Excluded from scoring (no data or not applicable): Branch-Protection, CI-Tests, Packaging. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "branch_protection",
                    "ci_tests",
                    "packaging"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 25,
            "inputs": {
              "source": "openssf_scorecard",
              "checks_evaluated": 15,
              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 3,
              "scorecard_aggregate": 2.5
            },
            "components": [
              {
                "key": "binary_artifacts",
                "name": "Binary-Artifacts",
                "detail": "no binaries found in the repo",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "ci_tests",
                "name": "CI-Tests",
                "detail": "no pull request found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 2.5
              },
              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "code_review",
                "name": "Code-Review",
                "detail": "Found 0/30 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 1 contributing companies or organizations -- score normalized to 3",
                "points": 0.8,
                "status": "partial",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no dangerous workflow patterns detected",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "no update tool detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "3 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 2",
                "points": 1.5,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow not detected",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
                "detail": "no SAST tool detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "security_policy",
                "name": "Security-Policy",
                "detail": "security policy file not detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "signed_releases",
                "name": "Signed-Releases",
                "detail": "Project has not signed or included provenance with any releases.",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "detected GitHub workflow tokens with excessive permissions",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "11 existing vulnerabilities detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              }
            ]
          },
          {
            "key": "dependency_advisories",
            "band": "good",
            "name": "Dependency advisories",
            "note": "Excluded from scoring (no data or not applicable): Indirect dependencies free of known advisories. Remaining weights renormalized. Matched 34 resolved dependencies against OSV. This repository publishes no package the index resolves, so the repository dependency graph was assessed instead. That graph mixes development and test pins with shipped dependencies, so only the declared runtime dependencies are scored; transitive findings are reported as context and excluded from the score. Reachability is not analyzed.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "indirect_dependencies_free_of_known_advisories"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              },
              {
                "code": "advisories_scope_repository",
                "params": {
                  "assessed": 34
                }
              },
              {
                "code": "advisories_repo_graph_caveat",
                "params": {}
              },
              {
                "code": "advisories_reachability",
                "params": {}
              }
            ],
            "value": 74,
            "inputs": {
              "source": "osv",
              "advisories": 14,
              "affected_packages": 4,
              "assessed_packages": 34,
              "unassessed_packages": 0,
              "affected_by_severity": "high 1, moderate 1, unknown 2",
              "direct_affected_packages": 1
            },
            "components": [
              {
                "key": "direct_dependencies_free_of_known_advisories",
                "name": "Direct dependencies free of known advisories",
                "detail": "1 affected: github.com/ulikunitz/xz v0.5.10 (moderate 5.3)",
                "points": 20.2,
                "status": "partial",
                "details": [
                  {
                    "code": "advisories_affected",
                    "params": {
                      "count": 1,
                      "packages": "github.com/ulikunitz/xz v0.5.10 (moderate 5.3)"
                    }
                  }
                ],
                "max_points": 35
              },
              {
                "key": "indirect_dependencies_free_of_known_advisories",
                "name": "Indirect dependencies free of known advisories",
                "detail": "transitive set not separable from development and test dependencies in this scope",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "advisories_scope_not_separable",
                    "params": {}
                  }
                ],
                "max_points": 25
              },
              {
                "key": "no_advisories_left_outstanding",
                "name": "No advisories left outstanding",
                "detail": "1 advisory-carrying package(s) unaddressed past 90 days; oldest published 327 days ago",
                "points": 35.3,
                "status": "partial",
                "details": [
                  {
                    "code": "advisories_stale",
                    "params": {
                      "days": 90,
                      "count": 1,
                      "oldest": 327
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "malicious_dependencies",
            "band": "excellent",
            "name": "Malicious dependencies",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "source": "osv",
              "meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
              "packages": [],
              "red_flag": false,
              "assessed_packages": 34,
              "malicious_packages": 0,
              "direct_malicious_packages": 0,
              "withdrawn_malicious_packages": 0,
              "installable_malicious_packages": 0
            },
            "components": [
              {
                "key": "no_dependency_reported_as_a_malicious_package",
                "name": "No dependency reported as a malicious package",
                "detail": "no dependency is reported as a malicious package",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "no_malicious_dependencies",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          },
          {
            "key": "high_risk_jurisdiction_exposure",
            "band": "excellent",
            "name": "High-Risk Jurisdiction Exposure",
            "note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
            "notes": [
              {
                "code": "jurisdiction_evidence_limits",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "meaning": "self-published location evidence; not nationality or citizenship",
              "red_flag": false,
              "exposures": [],
              "policy_countries": [
                "Russia",
                "Iran",
                "North Korea"
              ],
              "review_only_matches": 0,
              "assessed_self_published_locations": 3
            },
            "components": [
              {
                "key": "policy_exposure_multiplier",
                "name": "Policy exposure multiplier",
                "detail": "no confirmed policy-scope location match",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "jurisdiction_no_match",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "at_risk",
        "name": "AI Readiness",
        "value": 48,
        "weight": 0,
        "metrics": [
          {
            "key": "ai_agent_context",
            "band": "critical",
            "name": "Agent context & guidance",
            "note": null,
            "notes": [],
            "value": 4,
            "inputs": {
              "has_llms_txt": false,
              "legible_history_share": 0.08,
              "agent_instruction_files": [],
              "agent_instruction_max_bytes": null
            },
            "components": [
              {
                "key": "agent_instructions",
                "name": "Agent instructions",
                "detail": "no CLAUDE.md / AGENTS.md / editor rules",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_instructions",
                    "params": {}
                  }
                ],
                "max_points": 45
              },
              {
                "key": "machine_readable_docs_llms_txt",
                "name": "Machine-readable docs (llms.txt)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "legible_commit_history",
                "name": "Legible commit history",
                "detail": "8 of 100 human commits state their intent (structured subject or explanatory body)",
                "points": 4.3,
                "status": "partial",
                "details": [
                  {
                    "code": "legible_history",
                    "params": {
                      "legible": 8,
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "ai_verify_loop",
            "band": "moderate",
            "name": "Verify loop (build / test / typecheck)",
            "note": null,
            "notes": [],
            "value": 61,
            "inputs": {
              "has_nix": false,
              "has_tests": true,
              "lockfiles": [
                "go.sum"
              ],
              "has_dockerfile": false,
              "typed_language": true,
              "bootstrap_files": [
                "Makefile"
              ],
              "has_devcontainer": false,
              "has_linter_config": false,
              "typecheck_configs": [],
              "agent_commit_share": 0,
              "toolchain_manifests": [
                "go.mod"
              ],
              "dependency_bot_commit_share": 0
            },
            "components": [
              {
                "key": "one_command_bootstrap",
                "name": "One-command bootstrap",
                "detail": "Makefile",
                "points": 18,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "Makefile"
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "automated_tests",
                "name": "Automated tests",
                "detail": null,
                "points": 22,
                "status": "met",
                "details": [],
                "max_points": 22
              },
              {
                "key": "lint_format_config",
                "name": "Lint / format config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
              },
              {
                "key": "static_type_checking",
                "name": "Static type checking",
                "detail": "Go (statically typed)",
                "points": 11,
                "status": "met",
                "details": [
                  {
                    "code": "statically_typed_language",
                    "params": {
                      "language": "Go"
                    }
                  }
                ],
                "max_points": 11
              },
              {
                "key": "reproducible_environment",
                "name": "Reproducible environment",
                "detail": "lockfile",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "lockfile"
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "demonstrated_agent_practice",
                "name": "Demonstrated agent practice",
                "detail": "no agent-authored commits among the last 100",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_authored_commits",
                    "params": {
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "automated_maintenance",
                "name": "Automated maintenance",
                "detail": "no automated dependency updates observed",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_dependency_automation",
                    "params": {}
                  }
                ],
                "max_points": 8
              },
              {
                "key": "openssf_scorecard_pinned_dependencies",
                "name": "OpenSSF Scorecard: Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "ai_code_legibility",
            "band": "excellent",
            "name": "Code legibility for models",
            "note": null,
            "notes": [],
            "value": 99,
            "inputs": {
              "primary_language": "Go",
              "largest_source_bytes": 122666,
              "source_files_sampled": 172,
              "oversized_source_files": 3
            },
            "components": [
              {
                "key": "type_checkable_code",
                "name": "Type-checkable code",
                "detail": "Go (statically typed)",
                "points": 45,
                "status": "met",
                "details": [
                  {
                    "code": "statically_typed_language",
                    "params": {
                      "language": "Go"
                    }
                  }
                ],
                "max_points": 45
              },
              {
                "key": "manageable_file_sizes",
                "name": "Manageable file sizes",
                "detail": "3/172 source files over 60KB",
                "points": 54,
                "status": "partial",
                "details": [
                  {
                    "code": "oversized_source_files",
                    "params": {
                      "kb": 60,
                      "sampled": 172,
                      "oversized": 3
                    }
                  }
                ],
                "max_points": 55
              }
            ]
          }
        ],
        "description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
      }
    ],
    "metrics_version": "1.13.0"
  },
  "warnings": [
    "Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token"
  ],
  "report_type": "repository",
  "generated_at": "2026-07-22T15:27:41.706184Z",
  "schema_version": "0.26.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/e/evolbioinfo/goalign.svg",
  "full_name": "evolbioinfo/goalign",
  "license_state": "standard",
  "license_spdx": "GPL-2.0"
}

Bewertungen sind Signale, keine Garantien. Sie spiegeln öffentlich sichtbare Praxis auf GitHub wider — kein Code-Audit und keine Sicherheitsgarantie.

Fehlende Daten werden ausgeschlossen und die Gewichte neu normiert, nie als null bewertet. Die Methodik ist versioniert und offen: Metriken v1.13.0, Schema v0.26.0 — vollständige Methodik · Metriken-Wiki.

Wie ein einzelnes Ergebnis im Gesamtregister steht: aggregierte StatistikenGo.