Öffentliches Register
Software-GesundheitsberichtSchema 0.26.0 · Metriken 1.13.0 · 2026-07-22 15:26 UTC

evolbioinfo / gotree

Gotree: a set of command line tools and an API to manipulate phylogenetic trees.

Go · ShellGPL-2.0★ 150 Sterne⑂ 19 Forksseit Juli 2016Auf GitHub ansehen ↗

evolbioinfo/gotree erreicht einen Gesundheitsindex von 61 von 100 und liegt damit im Bereich Mittel. Am stärksten schneidet es bei Engineering Quality (81/100) ab, am schwächsten bei Security (37/100). Zuletzt vor 7 Tagen aktualisiert. Ein einzelner Mitwirkender trägt den Großteil der jüngsten Arbeit.

61
gesamt / 100
Mittel

Software-Gesundheitsindex

Metriken werden auf einer Skala von 1–100 in gewichtete Kategorien gruppiert. Der Gesamtwert beginnt als ihr Mittel; sobald öffentliche Evidenz die Richtlinie für Hochrisikojurisdiktionen auslöst, wird die Bewertung angepasst und erhält die Obergrenze 49 (Gefährdet). AI Readiness liegt außerhalb.

61
Exzellent85-100Vorbildlich; erfüllt im Wesentlichen alle geprüften Kriterien
Gut70-84Gesund; geringfügige Lücken
Mittel50-69Akzeptabel mit deutlichen Lücken; Überprüfung empfohlen
Gefährdet30-49Erhebliche Schwächen; eine Übernahme erfordert Vorsicht
Kritisch1-29Schwerwiegende Probleme (aufgegeben, nur ein Maintainer, keine Hygiene)
VitalitätCommunity &VerbreitungNachhaltigkeit &GovernanceEngineering-QualitätSicherheitAI Readiness

Bewertungsprofil

Jede Achse ist eine Kategorie. Die Form zählt mehr als der Durchschnitt — ein gesundes Projekt füllt die gesamte Fläche, während ein Profil aus Spitzen und Kratern bedeutet, dass Stärke in einer Dimension Risiken in einer anderen verdeckt.

Eigentümerschaft

50 Follower30 öffentliche Reposseit Feb. 2017

Dieses Repository wird von einer Organisation getragen — geteilte, rechenschaftspflichtige Trägerschaft, die jeden einzelnen Maintainer überdauern kann.

Paket-Ökosysteme

RegistryPaketVersionDownloads / MonatVersionenZuletzt veröffentlicht
Gogithub.com/evolbioinfo/gotreev0.5.2-40vor 22 Tagen

Metriken nach Kategorie

Vitalität

Lebt das Projekt — wird Code geschrieben und werden Releases ausgeliefert?

68Mittel · 22 % des Gesamtindex
Wie die Bewertung erfolgt
36/36Push-Aktualität — letzter Push vor 7 Tagen
6.9/36Commit-Rhythmus — 10/52 Wochen mit Commits
14.1/18Commit-Volumen — 36 Commits im letzten Jahr
5/10OpenSSF Scorecard: Maintained — 6 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 5
Verwendete Eingangsdaten
commits_last_year36
human_commit_share0,95
days_since_last_push7
active_weeks_last_year10
Wie die Bewertung erfolgt
27/27Liefert Releases aus — 53 Releases veröffentlicht
36/36Release-Aktualität — letztes Release vor 6 Tagen
12.6/27Release-Rhythmus — ein Release etwa alle 217 Tage
0/10OpenSSF Scorecard: Signed-Releases — Project has not signed or included provenance with any releases.
Verwendete Eingangsdaten
releases_count53
latest_release_tagv0.5.2
releases_from_tagsnein
days_since_latest_release6
mean_days_between_releases217

Community & Verbreitung

Hat das Projekt Nutzer, Downloads, Aufmerksamkeit und ein einladendes Umfeld für Beitragende?

51Mittel · 18 % des Gesamtindex
Wie die Bewertung erfolgt
35.3/60Stars — 150 Stars
10.5/25Forks — 19 Forks
5.6/15Watcher — 11 Watcher
Verwendete Eingangsdaten
forks19
stars150
watchers11
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history
Wie die Bewertung erfolgt
22.5/22.5README
22.5/22.5Lizenz — anerkannte Lizenz (GPL-2.0)
0/18CONTRIBUTING-Leitfaden
0/13.5Verhaltenskodex
0/7.2Issue-Vorlage
0/6.3PR-Vorlage
Verwendete Eingangsdaten
has_readmeja
has_licenseja
has_contributingnein
has_issue_templatenein
has_code_of_conductnein
has_pull_request_templatenein

Nachhaltigkeit & Governance

Überdauert das Projekt die Menschen, die es tragen — Bus-Faktor, Reaktionsfähigkeit, Trägerschaft und Paketpflege?

63Mittel · 24 % des Gesamtindex
Wie die Bewertung erfolgt
9/54Bus-Faktor — 1 Beitragende decken die Hälfte aller Commits ab
0.3/22.5Commit-Verteilung — wichtigste beitragende Person verfasste 99 % der Commits
6.8/13.5Breite der Beitragenden — 5 Beitragende
6/10OpenSSF Scorecard: Contributors — project has 2 contributing companies or organizations -- score normalized to 6
Verwendete Eingangsdaten
bus_factor1
contributors_sampled5
top_contributor_share0,986
Wie die Bewertung erfolgt
42.3/46.8Issue-Lösungsquote — 90 % der Issues geschlossen
38.2/38.3PR-Annahme — 9/9 entschiedene PRs gemergt
0/15OpenSSF Scorecard: Code-Review — Found 1/19 approved changesets -- score normalized to 0
Verwendete Eingangsdaten
merged_prs9
open_issues2
closed_issues19
issue_closed_ratio0,905
closed_unmerged_prs0
Wie die Bewertung erfolgt
30/30Organisatorische Trägerschaft — im Besitz einer Organisation
0/20Verifizierte Domain
12.3/25Reichweite des Inhabers — 50 Follower von evolbioinfo
22.9/25Kontohistorie — 30 öffentliche Repos, Kontoalter ca. 9 Jahre
Verwendete Eingangsdaten
followers50
owner_typeOrganization
is_verified
owner_loginevolbioinfo
public_repos30
account_age_days3.437

Paketpflege

100Exzellent
Wie die Bewertung erfolgt
25/25Veröffentlicht & auflösbar — 1 Paket(e) auf go
35/35Veröffentlichungsaktualität — letzte Veröffentlichung vor 22 Tagen
20/20Versionshistorie — 40 veröffentlichte Versionen
20/20Nicht veraltet — aktiv, nicht veraltet oder zurückgezogen
Verwendete Eingangsdaten
packagesgithub.com/evolbioinfo/gotree
ecosystemsgo
any_deprecatednein
min_days_since_publish22

Engineering-Qualität

Sind grundlegende Engineering- und Dokumentationspraktiken vorhanden?

81Gut · 20 % des Gesamtindex
Wie die Bewertung erfolgt
24/24CI-Workflows — 1 Workflow(s)
24/24Tests vorhanden
0/16Linter-Konfiguration
0/9.6Pre-Commit-Hooks
0/6.4.editorconfig
20/20OpenSSF Scorecard: CI-Tests — 3 out of 3 merged PRs checked by a CI test -- score normalized to 10
Verwendete Eingangsdaten
has_cija
has_testsja
has_editorconfignein
has_linter_confignein
has_precommit_confignein

Dokumentation

100Exzellent
Wie die Bewertung erfolgt
30/30README
25/25Dokumentationsverzeichnis
15/15Dokumentations-/Homepage-Site — https://research.pasteur.fr/en/software/goalign-gotree/
10/10Repository-Beschreibung
10/10Topics — 7 Topics
10/10Wiki
Verwendete Eingangsdaten
topicsphylogeny, newick, tree, tree-structure, itol, gotree, nexus
has_wikija
homepagehttps://research.pasteur.fr/en/software/goalign-gotree/
has_readmeja
has_docs_dirja
has_descriptionja

Sicherheit

Sind die sichtbaren Sicherheits- und Lieferkettenpraktiken belastbar, ohne ungeklärte Exposition gegenüber Hochrisikojurisdiktionen?

37Gefährdet · 16 % des Gesamtindex

Sicherheitslage

30Gefährdet
Wie die Bewertung erfolgt
7.5/7.5Binary-Artifacts — no binaries found in the repo
0/7.5Branch-Protection — keine Daten
2.5/2.5CI-Tests — 3 out of 3 merged PRs checked by a CI test -- score normalized to 10
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
0/7.5Code-Review — Found 1/19 approved changesets -- score normalized to 0
1.5/2.5Contributors — project has 2 contributing companies or organizations -- score normalized to 6
10/10Dangerous-Workflow — no dangerous workflow patterns detected
0/7.5Dependency-Update-Tool — no update tool detected
0/5Fuzzing — project is not fuzzed
2.5/2.5Lizenz — license file detected
3.8/7.5Maintained — 6 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 5
0/5Packaging — keine Daten
0/5Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
0/5SAST — SAST tool is not run on all commits -- score normalized to 0
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — Project has not signed or included provenance with any releases.
0/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
0/7.5Vulnerabilities — 12 existing vulnerabilities detected
Verwendete Eingangsdaten
sourceopenssf_scorecard
checks_evaluated16
scorecard_versionv5.5.0
checks_inconclusive2
scorecard_aggregate3
Von der Bewertung ausgeschlossen (keine Daten oder nicht anwendbar): branch_protection, packaging. Die verbleibenden Gewichte wurden renormalisiert.
Wie die Bewertung erfolgt
14/35Direkte Abhängigkeiten ohne bekannte Advisories — 1 betroffen: golang.org/x/image v0.11.0 (high 7.5)
0/25Indirekte Abhängigkeiten ohne bekannte Advisories — transitive Menge in diesem Bereich nicht von Entwicklungs- und Test-Abhängigkeiten trennbar
33.7/40Keine offenen Advisories — 1 Paket(e) mit Advisory seit über 90 Tagen unbehandelt; ältestes vor 756 Tagen veröffentlicht
Verwendete Eingangsdaten
sourceosv
advisories16
affected_packages4
assessed_packages39
unassessed_packages0
affected_by_severityhigh 1, moderate 1, unknown 2
direct_affected_packages1
Von der Bewertung ausgeschlossen (keine Daten oder nicht anwendbar): Indirekte Abhängigkeiten ohne bekannte Advisories. Die verbleibenden Gewichte wurden renormalisiert. 39 aufgelöste Abhängigkeiten wurden mit OSV abgeglichen. Dieses Repository veröffentlicht kein Paket, das der Index auflöst; bewertet wurde daher der Abhängigkeitsgraph des Repositorys. Dieser Graph vermischt Entwicklungs- und Test-Pins mit ausgelieferten Abhängigkeiten, daher werden nur die deklarierten Laufzeit-Abhängigkeiten bewertet; transitive Befunde werden als Kontext ausgewiesen und fließen nicht in die Bewertung ein. Erreichbarkeit wird nicht analysiert.

AI Readiness

Wie gut ist das Repository dafür ausgestattet, mit KI-Coding-Agenten entwickelt und gepflegt zu werden? Ein unabhängiges, experimentelles Badge — Gewicht 0,0, es wird eigenständig ausgewiesen und verändert den Gesamt-Gesundheitswert nicht.

48Gefährdet · 0 % des Gesamtindex
Wie die Bewertung erfolgt
0/45Agentenanweisungen — keine CLAUDE.md / AGENTS.md / Editor-Regeln
0/15Maschinenlesbare Doku (llms.txt)
5.6/40Lesbare Commit-Historie — 10 von 95 menschlichen Commits benennen ihre Absicht (strukturierter Betreff oder erläuternder Text)
Verwendete Eingangsdaten
has_llms_txtnein
legible_history_share0,105
agent_instruction_files
agent_instruction_max_bytes
Wie die Bewertung erfolgt
18/18Bootstrap mit einem Befehl — Makefile
22/22Automatisierte Tests
0/11Lint-/Format-Konfiguration
11/11Statische Typprüfung — Go (statisch typisiert)
10/10Reproduzierbare Umgebung — lockfile
0/10Belegte Agentenpraxis — keine von Agenten verfassten Commits unter den letzten 100
0/8Automatisierte Wartung — keine automatisierten Abhängigkeits-Updates beobachtet
0/10OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
Verwendete Eingangsdaten
has_nixnein
has_testsja
lockfilesgo.sum
has_dockerfilenein
typed_languageja
bootstrap_filesMakefile
has_devcontainernein
has_linter_confignein
typecheck_configs
agent_commit_share0
toolchain_manifestsgo.mod
dependency_bot_commit_share0
Wie die Bewertung erfolgt
45/45Typprüfbarer Code — Go (statisch typisiert)
54.7/55Handhabbare Dateigrößen — 1/180 Quelldateien über 60 KB
Verwendete Eingangsdaten
primary_languageGo
largest_source_bytes61.630
source_files_sampled180
oversized_source_files1

Eckdaten

150GitHub-Sterne
5Mitwirkende
36Commits, letzte 12 Monate
7Tage seit letztem Push
53Releases
1Bus-Faktor
2offene Issues
GoPaket-Ökosysteme

Warnungen zur Datenerhebung

  • Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token

Weitere Details

Stern- und Fork-Verlauf 0 ★ / 19 ⇿
0Sterne
19Forks
17Releases

Wann jeder Stern und Fork hinzugefügt wurde, von GitHub erfasst und nach Tagen gruppiert. Das kumulierte Wachstum steht direkt über den täglichen Zugängen, aus denen es besteht, sodass beide gegeneinander lesbar sind: stetiger organischer Zuwachs sieht ganz anders aus als ein abrupter, kurzlebiger Ausschlag. Wo dieser Unterschied messbar ist, wird er als Wachstumsauthentizität ausgewiesen.

0481216201922018-122022-092026-06
Major 0Minor 3Patch 7

Jeder Punkt umfasst 7 Tage.

OpenSSF Scorecard 3.0 / 10
3.0Gesamtwert

Unabhängige, werkzeugneutrale Sicherheitsbewertung durch das quelloffene OpenSSF Scorecard. Jede Prüfung honoriert eine Sicherheits-Praxis, nicht das Werkzeug eines bestimmten Anbieters. Prüfungen, die Scorecard nicht ermitteln konnte, sind mit k. A. markiert und vom Sicherheitswert ausgeschlossen (nie als null gezählt).Scorecard v5.5.0 · 2026-07-22 15:26 UTC

10Binary-Artifactsno binaries found in the repo
k. A.Branch-Protectioninternal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md
10CI-Tests3 out of 3 merged PRs checked by a CI test -- score normalized to 10
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
0Code-ReviewFound 1/19 approved changesets -- score normalized to 0
6Contributorsproject has 2 contributing companies or organizations -- score normalized to 6
10Dangerous-Workflowno dangerous workflow patterns detected
0Dependency-Update-Toolno update tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
5Maintained6 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 5
k. A.Packagingpackaging workflow not detected
0Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 0
0SASTSAST tool is not run on all commits -- score normalized to 0
0Security-Policysecurity policy file not detected
0Signed-ReleasesProject has not signed or included provenance with any releases.
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
0Vulnerabilities12 existing vulnerabilities detected
Direkte Abhängigkeiten 11
RegistryPaketVersionsvorgabeManifest
Gogithub.com/ajstarks/svgov0.0.0-20211024235047-1546f124cd8bgo.mod
Gogithub.com/evolbioinfo/goalignv0.3.7-0.20230906113011-fcecb09f9d43go.mod
Gogithub.com/fredericlemoine/bitsetv1.2.0go.mod
Gogithub.com/fredericlemoine/cobrashellv0.0.0-20180921081141-49c72f93426cgo.mod
Gogithub.com/fredericlemoine/gostatsv0.2.0go.mod
Gogithub.com/golang/freetypev0.0.0-20170609003504-e2365dfdc4a0go.mod
Gogithub.com/jlaffaye/ftpv0.0.0-20210307004419-5d4190119067go.mod
Gogithub.com/llgcode/draw2dv0.0.0-20210313082411-577c1ead272ago.mod
Gogithub.com/spf13/cobrav1.5.0go.mod
Gogolang.org/x/imagev0.11.0go.mod
Gogonum.org/v1/plotv0.14.0go.mod
Alle Abhängigkeiten 39

Vollständig aufgelöster Abhängigkeitssatz aus dem GitHub-Abhängigkeitsgraphen: 11 direkte und 28 indirekte (transitive) Pakete. Die transitive Hülle ist vollständig, wenn das Repository eine Lockfile eincheckt.

RegistryPaketVersionBeziehung
Gogithub.com/ajstarks/svgov0.0.0-20211024235047-1546f124cd8bdirekt
Gogithub.com/evolbioinfo/goalignv0.3.7-0.20230906113011-fcecb09f9d43direkt
Gogithub.com/fredericlemoine/bitsetv1.2.0direkt
Gogithub.com/fredericlemoine/cobrashellv0.0.0-20180921081141-49c72f93426cdirekt
Gogithub.com/fredericlemoine/gostatsv0.2.0direkt
Gogithub.com/golang/freetypev0.0.0-20170609003504-e2365dfdc4a0direkt
Gogithub.com/jlaffaye/ftpv0.0.0-20210307004419-5d4190119067direkt
Gogithub.com/llgcode/draw2dv0.0.0-20210313082411-577c1ead272adirekt
Gogithub.com/spf13/cobrav1.5.0direkt
Gogolang.org/x/imagev0.11.0direkt
Gogonum.org/v1/plotv0.14.0direkt
Gogioui.orgv0.2.0indirekt
Gogioui.org/cpuv0.0.0-20220412190645-f1e9e8c3b1f7indirekt
Gogioui.org/shaderv1.0.6indirekt
Gogioui.org/xv0.2.0indirekt
Gogit.sr.ht/~sbinet/ggv0.5.0indirekt
Gogithub.com/abiosoft/ishellv2.0.0+incompatibleindirekt
Gogithub.com/abiosoft/readlinev0.0.0-20180607040430-155bce2042dbindirekt
Gogithub.com/andybalholm/strokev0.0.0-20221221101821-bd29b49d73f0indirekt
Gogithub.com/armon/go-radixv1.0.0indirekt
Gogithub.com/campoy/embedmdv1.0.0indirekt
Gogithub.com/fatih/colorv1.10.0indirekt
Gogithub.com/flynn-archive/go-shlexv0.0.0-20150515145356-3f9db97f8568indirekt
Gogithub.com/go-fonts/liberationv0.3.1indirekt
Gogithub.com/go-latex/latexv0.0.0-20230307184459-12ec69307ad9indirekt
Gogithub.com/go-pdf/fpdfv0.8.0indirekt
Gogithub.com/go-text/typesettingv0.0.0-20230803102845-24e03d8b5372indirekt
Gogithub.com/inconshreveable/mousetrapv1.0.1indirekt
Gogithub.com/mattn/go-colorablev0.1.8indirekt
Gogithub.com/mattn/go-isattyv0.0.12indirekt
Gogithub.com/pmezard/go-difflibv1.0.0indirekt
Gogithub.com/spf13/pflagv1.0.5indirekt
Gogithub.com/ulikunitz/xzv0.5.10indirekt
Gogolang.org/x/expv0.0.0-20230801115018-d63ba01acd4bindirekt
Gogolang.org/x/exp/shinyv0.0.0-20230801115018-d63ba01acd4bindirekt
Gogolang.org/x/sysv0.11.0indirekt
Gogolang.org/x/textv0.12.0indirekt
Gogonum.org/v1/gonumv0.14.0indirekt
Gorsc.io/pdfv0.1.1indirekt
Abhängigkeits-Advisories 4

Dieses Repository veröffentlicht kein vom Index auflösbares Paket, daher wurde sein eigener Abhängigkeitsgraph bewertet – 39 Pakete, darunter auch Entwicklungs- und Test-Pins, die nie ausgeliefert werden: 4 tragen bekannte Advisories, davon 1 direkte.

PaketVersionBeziehungSchweregradAdvisoriesBehoben in
golang.org/x/imagev0.11.0direkthoch120.43.0
github.com/ulikunitz/xzv0.5.10indirektmittel20.5.15
golang.org/x/sysv0.11.0indirektunbekannt10.44.0
golang.org/x/textv0.12.0indirektunbekannt10.39.0

Ein Advisory bedeutet, dass die im Abhängigkeitsgraphen erfasste Version in den betroffenen Bereich eines Advisories fällt. Erreichbarkeit wird nicht analysiert, und der Graph enthält Entwicklungs- und Test-Pins — ein Fund kann das Werkzeug betreffen und nicht die ausgelieferte Software.

JSON-Rohbericht maschinenlesbar
{
  "data": {
    "repo": {
      "topics": [
        "phylogeny",
        "newick",
        "tree",
        "tree-structure",
        "itol",
        "gotree",
        "nexus"
      ],
      "is_fork": false,
      "size_kb": 2145,
      "has_wiki": true,
      "homepage": "https://research.pasteur.fr/en/software/goalign-gotree/",
      "languages": {
        "Go": 659007,
        "Shell": 80334,
        "Makefile": 1853
      },
      "pushed_at": "2026-07-15T15:22:55Z",
      "created_at": "2016-07-27T15:39:01Z",
      "owner_type": "Organization",
      "updated_at": "2026-07-15T15:41:21Z",
      "description": "Gotree: a set of command line tools and an API to manipulate phylogenetic trees.",
      "is_archived": false,
      "is_disabled": false,
      "license_spdx": "GPL-2.0",
      "default_branch": "master",
      "license_spdx_raw": "GPL-2.0",
      "primary_language": "Go",
      "significant_languages": [
        "Go",
        "Shell"
      ]
    },
    "owner": {
      "blog": null,
      "name": "Evolutionary Bioinformatics",
      "type": "Organization",
      "login": "evolbioinfo",
      "company": null,
      "location": "Paris, France",
      "followers": 50,
      "avatar_url": "https://avatars.githubusercontent.com/u/25950370?v=4",
      "created_at": "2017-02-22T08:56:58Z",
      "is_verified": null,
      "public_repos": 30,
      "account_age_days": 3437
    },
    "license": {
      "state": "standard",
      "spdx_id": "GPL-2.0",
      "raw_spdx": "GPL-2.0",
      "file_present": true,
      "scorecard_found": true,
      "profile_has_license": true
    },
    "activity": {
      "releases": [
        {
          "tag": "v0.5.2",
          "kind": "patch",
          "published_at": "2026-07-15T15:30:34Z"
        },
        {
          "tag": "v0.5.1",
          "kind": "patch",
          "published_at": "2025-12-15T14:44:16Z"
        },
        {
          "tag": "v0.5.0",
          "kind": "minor",
          "published_at": "2025-07-09T15:38:33Z"
        },
        {
          "tag": "v0.4.5",
          "kind": "patch",
          "published_at": "2023-11-28T16:29:51Z"
        },
        {
          "tag": "v0.4.4",
          "kind": "patch",
          "published_at": "2022-12-09T11:24:19Z"
        },
        {
          "tag": "v0.4.4a",
          "kind": "other",
          "published_at": "2022-06-29T09:33:36Z"
        },
        {
          "tag": "v0.4.3",
          "kind": "patch",
          "published_at": "2022-04-14T08:03:45Z"
        },
        {
          "tag": "v0.4.3a",
          "kind": "other",
          "published_at": "2021-11-26T15:27:29Z"
        },
        {
          "tag": "v0.4.2",
          "kind": "patch",
          "published_at": "2021-09-07T09:11:03Z"
        },
        {
          "tag": "v0.4.1",
          "kind": "patch",
          "published_at": "2021-03-10T15:59:18Z"
        },
        {
          "tag": "v0.4.1c",
          "kind": "other",
          "published_at": "2021-01-15T14:15:41Z"
        },
        {
          "tag": "v0.4.1b",
          "kind": "other",
          "published_at": "2021-01-06T22:28:22Z"
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            "name": "CI-Tests",
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            "reason": "3 out of 3 merged PRs checked by a CI test -- score normalized to 10",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
          },
          {
            "name": "CII-Best-Practices",
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            "reason": "no effort to earn an OpenSSF best practices badge detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
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            "name": "Code-Review",
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            "reason": "Found 1/19 approved changesets -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
          },
          {
            "name": "Contributors",
            "score": 6,
            "reason": "project has 2 contributing companies or organizations -- score normalized to 6",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
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          {
            "name": "Dangerous-Workflow",
            "score": 10,
            "reason": "no dangerous workflow patterns detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
          },
          {
            "name": "Dependency-Update-Tool",
            "score": 0,
            "reason": "no update tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
          },
          {
            "name": "Fuzzing",
            "score": 0,
            "reason": "project is not fuzzed",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
          },
          {
            "name": "License",
            "score": 10,
            "reason": "license file detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
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          {
            "name": "Maintained",
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            "reason": "6 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 5",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
          },
          {
            "name": "Packaging",
            "score": null,
            "reason": "packaging workflow not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
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          {
            "name": "Pinned-Dependencies",
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            "reason": "dependency not pinned by hash detected -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
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          {
            "name": "SAST",
            "score": 0,
            "reason": "SAST tool is not run on all commits -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
          },
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            "name": "Security-Policy",
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            "reason": "security policy file not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
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          {
            "name": "Signed-Releases",
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            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
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            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
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            "name": "Vulnerabilities",
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            "reason": "12 existing vulnerabilities detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
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        {
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          "last_comment_author": null
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            "inputs": {
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            "notes": [],
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                "key": "editorconfig",
                "name": ".editorconfig",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.4
              },
              {
                "key": "openssf_scorecard_ci_tests",
                "name": "OpenSSF Scorecard: CI-Tests",
                "detail": "3 out of 3 merged PRs checked by a CI test -- score normalized to 10",
                "points": 20,
                "status": "met",
                "details": [],
                "max_points": 20
              }
            ]
          },
          {
            "key": "documentation",
            "band": "excellent",
            "name": "Documentation",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "topics": [
                "phylogeny",
                "newick",
                "tree",
                "tree-structure",
                "itol",
                "gotree",
                "nexus"
              ],
              "has_wiki": true,
              "homepage": "https://research.pasteur.fr/en/software/goalign-gotree/",
              "has_readme": true,
              "has_docs_dir": true,
              "has_description": true
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 30,
                "status": "met",
                "details": [],
                "max_points": 30
              },
              {
                "key": "documentation_directory",
                "name": "Documentation directory",
                "detail": null,
                "points": 25,
                "status": "met",
                "details": [],
                "max_points": 25
              },
              {
                "key": "documentation_homepage_site",
                "name": "Documentation / homepage site",
                "detail": "https://research.pasteur.fr/en/software/goalign-gotree/",
                "points": 15,
                "status": "met",
                "details": [],
                "max_points": 15
              },
              {
                "key": "repository_description",
                "name": "Repository description",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "topics",
                "name": "Topics",
                "detail": "7 topics",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "topics_count",
                    "params": {
                      "count": 7
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "wiki",
                "name": "Wiki",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
      },
      {
        "key": "security",
        "band": "at_risk",
        "name": "Security",
        "value": 37,
        "weight": 0.16,
        "metrics": [
          {
            "key": "security_posture",
            "band": "at_risk",
            "name": "Security posture",
            "note": "Excluded from scoring (no data or not applicable): Branch-Protection, Packaging. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "branch_protection",
                    "packaging"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 30,
            "inputs": {
              "source": "openssf_scorecard",
              "checks_evaluated": 16,
              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 2,
              "scorecard_aggregate": 3
            },
            "components": [
              {
                "key": "binary_artifacts",
                "name": "Binary-Artifacts",
                "detail": "no binaries found in the repo",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "ci_tests",
                "name": "CI-Tests",
                "detail": "3 out of 3 merged PRs checked by a CI test -- score normalized to 10",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "code_review",
                "name": "Code-Review",
                "detail": "Found 1/19 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 2 contributing companies or organizations -- score normalized to 6",
                "points": 1.5,
                "status": "partial",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no dangerous workflow patterns detected",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "no update tool detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "6 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 5",
                "points": 3.8,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow not detected",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
                "detail": "SAST tool is not run on all commits -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "security_policy",
                "name": "Security-Policy",
                "detail": "security policy file not detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "signed_releases",
                "name": "Signed-Releases",
                "detail": "Project has not signed or included provenance with any releases.",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "detected GitHub workflow tokens with excessive permissions",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "12 existing vulnerabilities detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              }
            ]
          },
          {
            "key": "dependency_advisories",
            "band": "moderate",
            "name": "Dependency advisories",
            "note": "Excluded from scoring (no data or not applicable): Indirect dependencies free of known advisories. Remaining weights renormalized. Matched 39 resolved dependencies against OSV. This repository publishes no package the index resolves, so the repository dependency graph was assessed instead. That graph mixes development and test pins with shipped dependencies, so only the declared runtime dependencies are scored; transitive findings are reported as context and excluded from the score. Reachability is not analyzed.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "indirect_dependencies_free_of_known_advisories"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              },
              {
                "code": "advisories_scope_repository",
                "params": {
                  "assessed": 39
                }
              },
              {
                "code": "advisories_repo_graph_caveat",
                "params": {}
              },
              {
                "code": "advisories_reachability",
                "params": {}
              }
            ],
            "value": 64,
            "inputs": {
              "source": "osv",
              "advisories": 16,
              "affected_packages": 4,
              "assessed_packages": 39,
              "unassessed_packages": 0,
              "affected_by_severity": "high 1, moderate 1, unknown 2",
              "direct_affected_packages": 1
            },
            "components": [
              {
                "key": "direct_dependencies_free_of_known_advisories",
                "name": "Direct dependencies free of known advisories",
                "detail": "1 affected: golang.org/x/image v0.11.0 (high 7.5)",
                "points": 14,
                "status": "partial",
                "details": [
                  {
                    "code": "advisories_affected",
                    "params": {
                      "count": 1,
                      "packages": "golang.org/x/image v0.11.0 (high 7.5)"
                    }
                  }
                ],
                "max_points": 35
              },
              {
                "key": "indirect_dependencies_free_of_known_advisories",
                "name": "Indirect dependencies free of known advisories",
                "detail": "transitive set not separable from development and test dependencies in this scope",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "advisories_scope_not_separable",
                    "params": {}
                  }
                ],
                "max_points": 25
              },
              {
                "key": "no_advisories_left_outstanding",
                "name": "No advisories left outstanding",
                "detail": "1 advisory-carrying package(s) unaddressed past 90 days; oldest published 756 days ago",
                "points": 33.7,
                "status": "partial",
                "details": [
                  {
                    "code": "advisories_stale",
                    "params": {
                      "days": 90,
                      "count": 1,
                      "oldest": 756
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "malicious_dependencies",
            "band": "excellent",
            "name": "Malicious dependencies",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "source": "osv",
              "meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
              "packages": [],
              "red_flag": false,
              "assessed_packages": 39,
              "malicious_packages": 0,
              "direct_malicious_packages": 0,
              "withdrawn_malicious_packages": 0,
              "installable_malicious_packages": 0
            },
            "components": [
              {
                "key": "no_dependency_reported_as_a_malicious_package",
                "name": "No dependency reported as a malicious package",
                "detail": "no dependency is reported as a malicious package",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "no_malicious_dependencies",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          },
          {
            "key": "high_risk_jurisdiction_exposure",
            "band": "excellent",
            "name": "High-Risk Jurisdiction Exposure",
            "note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
            "notes": [
              {
                "code": "jurisdiction_evidence_limits",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "meaning": "self-published location evidence; not nationality or citizenship",
              "red_flag": false,
              "exposures": [],
              "policy_countries": [
                "Russia",
                "Iran",
                "North Korea"
              ],
              "review_only_matches": 0,
              "assessed_self_published_locations": 17
            },
            "components": [
              {
                "key": "policy_exposure_multiplier",
                "name": "Policy exposure multiplier",
                "detail": "no confirmed policy-scope location match",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "jurisdiction_no_match",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "at_risk",
        "name": "AI Readiness",
        "value": 48,
        "weight": 0,
        "metrics": [
          {
            "key": "ai_agent_context",
            "band": "critical",
            "name": "Agent context & guidance",
            "note": null,
            "notes": [],
            "value": 6,
            "inputs": {
              "has_llms_txt": false,
              "legible_history_share": 0.105,
              "agent_instruction_files": [],
              "agent_instruction_max_bytes": null
            },
            "components": [
              {
                "key": "agent_instructions",
                "name": "Agent instructions",
                "detail": "no CLAUDE.md / AGENTS.md / editor rules",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_instructions",
                    "params": {}
                  }
                ],
                "max_points": 45
              },
              {
                "key": "machine_readable_docs_llms_txt",
                "name": "Machine-readable docs (llms.txt)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "legible_commit_history",
                "name": "Legible commit history",
                "detail": "10 of 95 human commits state their intent (structured subject or explanatory body)",
                "points": 5.6,
                "status": "partial",
                "details": [
                  {
                    "code": "legible_history",
                    "params": {
                      "legible": 10,
                      "sampled": 95
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "ai_verify_loop",
            "band": "moderate",
            "name": "Verify loop (build / test / typecheck)",
            "note": null,
            "notes": [],
            "value": 61,
            "inputs": {
              "has_nix": false,
              "has_tests": true,
              "lockfiles": [
                "go.sum"
              ],
              "has_dockerfile": false,
              "typed_language": true,
              "bootstrap_files": [
                "Makefile"
              ],
              "has_devcontainer": false,
              "has_linter_config": false,
              "typecheck_configs": [],
              "agent_commit_share": 0,
              "toolchain_manifests": [
                "go.mod"
              ],
              "dependency_bot_commit_share": 0
            },
            "components": [
              {
                "key": "one_command_bootstrap",
                "name": "One-command bootstrap",
                "detail": "Makefile",
                "points": 18,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "Makefile"
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "automated_tests",
                "name": "Automated tests",
                "detail": null,
                "points": 22,
                "status": "met",
                "details": [],
                "max_points": 22
              },
              {
                "key": "lint_format_config",
                "name": "Lint / format config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
              },
              {
                "key": "static_type_checking",
                "name": "Static type checking",
                "detail": "Go (statically typed)",
                "points": 11,
                "status": "met",
                "details": [
                  {
                    "code": "statically_typed_language",
                    "params": {
                      "language": "Go"
                    }
                  }
                ],
                "max_points": 11
              },
              {
                "key": "reproducible_environment",
                "name": "Reproducible environment",
                "detail": "lockfile",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "lockfile"
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "demonstrated_agent_practice",
                "name": "Demonstrated agent practice",
                "detail": "no agent-authored commits among the last 100",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_authored_commits",
                    "params": {
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "automated_maintenance",
                "name": "Automated maintenance",
                "detail": "no automated dependency updates observed",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_dependency_automation",
                    "params": {}
                  }
                ],
                "max_points": 8
              },
              {
                "key": "openssf_scorecard_pinned_dependencies",
                "name": "OpenSSF Scorecard: Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "ai_code_legibility",
            "band": "excellent",
            "name": "Code legibility for models",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "primary_language": "Go",
              "largest_source_bytes": 61630,
              "source_files_sampled": 180,
              "oversized_source_files": 1
            },
            "components": [
              {
                "key": "type_checkable_code",
                "name": "Type-checkable code",
                "detail": "Go (statically typed)",
                "points": 45,
                "status": "met",
                "details": [
                  {
                    "code": "statically_typed_language",
                    "params": {
                      "language": "Go"
                    }
                  }
                ],
                "max_points": 45
              },
              {
                "key": "manageable_file_sizes",
                "name": "Manageable file sizes",
                "detail": "1/180 source files over 60KB",
                "points": 54.7,
                "status": "partial",
                "details": [
                  {
                    "code": "oversized_source_files",
                    "params": {
                      "kb": 60,
                      "sampled": 180,
                      "oversized": 1
                    }
                  }
                ],
                "max_points": 55
              }
            ]
          }
        ],
        "description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
      }
    ],
    "metrics_version": "1.13.0"
  },
  "warnings": [
    "Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token"
  ],
  "report_type": "repository",
  "generated_at": "2026-07-22T15:26:54.842317Z",
  "schema_version": "0.26.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/e/evolbioinfo/gotree.svg",
  "full_name": "evolbioinfo/gotree",
  "license_state": "standard",
  "license_spdx": "GPL-2.0"
}

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