Catalogue tag

#rna-seq

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

7 records

Tagged “rna-seq”Ranked by health index

PyPI

73Goodhealth index

ablab/IsoQuant

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

Python★ 233Jul 17, 2026

Custom licenseJul 17, 2026 · metrics 1.13.0

PyPI

70Goodhealth index

helicalAI/helical

A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.

Python★ 221↓ 0/moJul 13, 2026

AGPL-3.0Jul 13, 2026 · metrics 1.13.0

crates.io · npm

67Moderatehealth index

COMBINE-lab/salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Rust★ 918Jul 16, 2026

BSD-3-ClauseJul 16, 2026 · metrics 1.13.0

PyPI

61Moderatehealth index

CDCgov/tostadas

🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission

Python · Nextflow · Batchfile★ 29Jul 18, 2026

Apache-2.0Jul 18, 2026 · metrics 1.13.0

PyPI · Go

60Moderatehealth index

the-omics-os/lobster

The self-evolving agentic framework for bioinformatics

Python★ 42Jul 15, 2026

Custom licenseJul 15, 2026 · metrics 1.13.0

PyPI · npm

58Moderatehealth index

haqaliz/contig

An agentic bioinformatics analyst: it runs the analysis on your own compute, self-heals failures, verifies the output, and returns a reproducible result.

Python · TypeScript★ 0↓ 0/moJul 14, 2026

Apache-2.0Jul 14, 2026 · metrics 1.13.0

PyPI · npm

40At riskhealth index

smartsbio/smarts-bio-jupyterlab

No repository description published.

TypeScript★ 1Jul 17, 2026

MITJul 17, 2026 · metrics 1.13.0