PyPI
ablab/IsoQuant
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Custom licenseJul 17, 2026 · metrics 2.10.0
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#rna-seq
Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.
12 records
PyPI
helicalAI/helical
A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
AGPL-3.0Aug 22, 2026 · metrics 2.10.0
crates.io · npm
COMBINE-lab/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
BSD-3-ClauseJul 16, 2026 · metrics 2.10.0
PyPI
cafferychen777/mLLMCelltype
Cell type annotation for single-cell RNA-seq using multi-LLM consensus
MITAug 2, 2026 · metrics 2.10.0
crates.io · npm · PyPI
COMBINE-lab/simpleaf
A rust framework to make using alevin-fry even simpler
BSD-3-ClauseAug 22, 2026 · metrics 2.10.0
PyPI
CDCgov/tostadas
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Apache-2.0Jul 18, 2026 · metrics 2.10.0
PyPI · npm
haqaliz/contig
An agentic bioinformatics analyst: it runs the analysis on your own compute, self-heals failures, verifies the output, and returns a reproducible result.
Apache-2.0Sep 5, 2026 · metrics 2.10.0
PyPI · Go
the-omics-os/lobster
The self-evolving agentic framework for bioinformatics
Custom licenseJul 15, 2026 · metrics 2.10.0
crates.io
COMBINE-lab/piscem
Mapping sequencing data to De Bruijn graphs, fast
BSD-3-ClauseAug 22, 2026 · metrics 2.10.0
Maven
GenomiqueENS/eoulsan
A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)
Custom licenseAug 16, 2026 · metrics 2.10.0
PyPI
edgardomortiz/Captus
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
GPL-3.0Jul 28, 2026 · metrics 2.10.0
PyPI · npm
smartsbio/smarts-bio-jupyterlab
No repository description published.
MITJul 17, 2026 · metrics 2.10.0