Public record
Software health reportschema 0.11.0 · metrics 2.10.0 · 2026-07-15 13:16 UTC

the-omics-os / lobster

The self-evolving agentic framework for bioinformatics

PythonCustom license★ 42 stars⑂ 9 forkssince Aug 2025View on GitHub ↗
KindLibraryCommand-line toolhow this is determined

the-omics-os/lobster holds a health index of 65 out of 100, placing it in the Good band. It scores highest on Engineering Quality (81/100) and lowest on Security (34/100). It was last updated 5 days ago. A single contributor accounts for most of its recent work.

65
overall / 100
Good

Software health index

Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean, calibrated against the distribution of the public record so bands carry percentile meaning; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At Risk ceiling of 34.

65
Exceptional93-100The record's top tier (≈ top 5%); essentially all checked criteria met
Excellent80-92Strong across the board; minor gaps
Good65-79Healthy; gaps are limited and manageable
Moderate50-64Acceptable with notable gaps; review recommended
Weak35-49Material weaknesses across several areas
At Risk20-34Significant weaknesses; adoption warrants caution
Critical1-19Severe problems (abandoned, single-maintainer, no hygiene)
VitalityCommunity &AdoptionSustainability &GovernanceEngineeringQualitySecurityAI Readiness

Score profile

Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.

The weighted overall 60 is calibrated to 65 on the published index scale (record calibration 2026-08-02).

Ownership

omics-osOrganization
14 followers9 public repossince Aug 2025

This repository is backed by an organization — shared, accountable stewardship that can outlive any single maintainer.

Package ecosystems

RegistryPackageVersionDownloads / moVersionsLast publishTags
PyPIlobster-ai1.1.419-5812 days agobioinformaticsrna-seqsingle-cellaimachine-learningdata-analysisgenomics

Metrics by category

Vitality

Is the project alive — is code being written and are releases shipping?

80Excellent · 21% of overall
How it's scored
36/36Push recencylast push 5 days ago
9/36Commit cadence13/52 weeks with commits
18/18Commit volume814 commits in the last year
10/10OpenSSF Scorecard: Maintained30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
Inputs used
commits_last_year814
human_commit_share
days_since_last_push5
active_weeks_last_year13
How it's scored
27/27Ships releases56 releases published
36/36Release recencylatest release 12 days ago
27/27Release cadencea release every ~7.6 days
0/10OpenSSF Scorecard: Signed-ReleasesProject has not signed or included provenance with any releases.
Inputs used
releases_count56
latest_release_tagv1.1.419
releases_from_tagsno
days_since_latest_release12
mean_days_between_releases7.6

Community & Adoption

Does the project have users, downloads, attention, and a welcoming setup for contributors?

48Weak · 17% of overall
How it's scored
26.2/60Stars42 stars
7.5/25Forks9 forks
0/15Watchers0 watchers
Inputs used
forks9
stars42
watchers0
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history
How it's scored
22.5/22.5README
16.9/22.5Licenselicense file present, not a recognized license
18/18CONTRIBUTING guide
0/13.5Code of conduct
0/7.2Issue template
0/6.3PR template
Inputs used
has_readmeyes
has_licenseyes
readme_badges
has_contributingyes
has_issue_templateno
has_code_of_conductno
readme_badge_services
has_pull_request_templateno

Sustainability & Governance

Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?

55Moderate · 23% of overall
How it's scored
9/54Bus factor1 contributor(s) cover half of all commits
0/22.5Commit distributiontop contributor authored 100% of commits
2.7/13.5Contributor breadth2 contributors
3/10OpenSSF Scorecard: Contributorsproject has 1 contributing companies or organizations -- score normalized to 3
Inputs used
bus_factor1
contributors_sampled2
top_contributor_share0.998
How it's scored
36/42Issue resolution86% of issues closed
18/30PR acceptance6/10 decided PRs merged
0/13Newcomer PR acceptanceno first-time contributor's PR decided in 30d
0/15OpenSSF Scorecard: Code-ReviewFound 0/30 approved changesets -- score normalized to 0
Inputs used
merged_prs6
open_issues1
closed_issues6
prs_merged_7d
prs_decided_7d
prs_merged_30d
prs_decided_30d
issue_closed_ratio0.857
closed_unmerged_prs4
first_time_authors_30d
first_time_prs_merged_30d
first_time_prs_decided_30d
Excluded from scoring (no data or not applicable): Newcomer PR acceptance. Remaining weights renormalized.
How it's scored
30/30Ownership backingorganization-owned
0/20Verified domainverified-domain status not read for this organization
8.5/25Owner reach14 followers of the-omics-os
9.1/25Track record9 public repos, account ~0 yr old
Inputs used
followers14
owner_typeOrganization
is_verified
owner_loginthe-omics-os
public_repos9
account_age_days336
Excluded from scoring (no data or not applicable): Verified domain. Remaining weights renormalized.

Package maintenance

100Exceptional
How it's scored
25/25Published & resolvable1 package(s) on pypi
35/35Publish recencylatest publish 12 days ago
20/20Version history58 published versions
20/20Not deprecatedactive, not deprecated or yanked
Inputs used
packageslobster-ai
ecosystemspypi
any_deprecatedno
min_days_since_publish12

Engineering Quality

Are baseline engineering and documentation practices in place?

81Excellent · 19% of overall
How it's scored
24/24CI workflows6 workflow(s)
24/24Tests present
0/16Linter config
0/9.6Pre-commit hooks
0/6.4.editorconfig
20/20OpenSSF Scorecard: CI-Tests2 out of 2 merged PRs checked by a CI test -- score normalized to 10
Inputs used
has_ciyes
has_testsyes
has_editorconfigno
has_linter_configno
has_precommit_configno

Documentation

100Exceptional
How it's scored
30/30README
25/25Documentation directory
15/15Documentation / homepage sitehttps://www.lobsterbio.com/
10/10Repository description
10/10Topics7 topics
10/10Wiki
Inputs used
topicsagents, bioinformatics, langgraph, transcriptomics, lobster, omics, proteomics
has_wikiyes
homepagehttps://www.lobsterbio.com/
docs_sitehttps://www.lobsterbio.com/
has_readmeyes
has_docs_diryes
has_descriptionyes

Security

Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?

34At Risk · 16% of overall
How it's scored
7.5/7.5Binary-Artifactsno binaries found in the repo
0/7.5Branch-Protectionbranch protection not enabled on development/release branches
2.5/2.5CI-Tests2 out of 2 merged PRs checked by a CI test -- score normalized to 10
0/2.5CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
0/7.5Code-ReviewFound 0/30 approved changesets -- score normalized to 0
0.8/2.5Contributorsproject has 1 contributing companies or organizations -- score normalized to 3
10/10Dangerous-Workflowno dangerous workflow patterns detected
0/7.5Dependency-Update-Toolno update tool detected
0/5Fuzzingproject is not fuzzed
2.2/2.5Licenselicense file detected
7.5/7.5Maintained30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
5/5Packagingpackaging workflow detected
0/5Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 0
0/5SASTSAST tool is not run on all commits -- score normalized to 0
0/5Security-Policysecurity policy file not detected
0/7.5Signed-ReleasesProject has not signed or included provenance with any releases.
0/7.5Token-Permissionsdetected GitHub workflow tokens with excessive permissions
0/7.5Vulnerabilities149 existing vulnerabilities detected
Inputs used
sourceopenssf_scorecard
checks_evaluated18
scorecard_versionv5.5.0
checks_inconclusive0
scorecard_aggregate3.4

AI Readiness

How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight (4%): agent tooling is a real maintenance signal, but a repository with none can still reach 100/100.

49Weak · 4% of overall
How it's scored
0/45Agent instructionsno CLAUDE.md / AGENTS.md / editor rules
0/15Machine-readable docs (llms.txt)
0/40Legible commit historyno data
Inputs used
has_llms_txtno
llms_txt_url
legible_history_share
agent_instruction_files
agent_instruction_max_bytes
Excluded from scoring (no data or not applicable): Legible commit history. Remaining weights renormalized.
How it's scored
18/18One-command bootstrapMakefile
22/22Automated tests
0/11Lint / format config
11/11Static type checkingpackages/lobster-genomics/lobster/agents/genomics/py.typed, packages/lobster-metabolomics/lobster/agents/metabolomics/py.typed, packages/lobster-metadata/lobster/agents/metadata_assistant/py.typed, packages/lobster-ml/lobster/agents/machine_learning/py.typed, packages/lobster-proteomics/lobster/agents/proteomics/py.typed, packages/lobster-research/lobster/agents/data_expert/py.typed, packages/lobster-research/lobster/agents/research/py.typed, packages/lobster-structural-viz/lobster/agents/py.typed, packages/lobster-transcriptomics/lobster/agents/transcriptomics/py.typed, packages/lobster-visualization/lobster/agents/py.typed
10/10Reproducible environmentlockfile
0/10Demonstrated agent practiceno data
0/8Automated maintenanceno data
0/10OpenSSF Scorecard: Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 0
Inputs used
has_nixno
has_testsyes
lockfilesgo.sum, uv.lock
has_dockerfileno
typed_languageno
bootstrap_filesMakefile
has_devcontainerno
has_linter_configno
typecheck_configspackages/lobster-genomics/lobster/agents/genomics/py.typed, packages/lobster-metabolomics/lobster/agents/metabolomics/py.typed, packages/lobster-metadata/lobster/agents/metadata_assistant/py.typed, packages/lobster-ml/lobster/agents/machine_learning/py.typed, packages/lobster-proteomics/lobster/agents/proteomics/py.typed, packages/lobster-research/lobster/agents/data_expert/py.typed, packages/lobster-research/lobster/agents/research/py.typed, packages/lobster-structural-viz/lobster/agents/py.typed, packages/lobster-transcriptomics/lobster/agents/transcriptomics/py.typed, packages/lobster-visualization/lobster/agents/py.typed
agent_commit_share
toolchain_manifests
dependency_bot_commit_share
Excluded from scoring (no data or not applicable): Demonstrated agent practice, Automated maintenance. Remaining weights renormalized.
How it's scored
27/45Type-checkable codePython with type-check config (packages/lobster-genomics/lobster/agents/genomics/py.typed, packages/lobster-metabolomics/lobster/agents/metabolomics/py.typed, packages/lobster-metadata/lobster/agents/metadata_assistant/py.typed, packages/lobster-ml/lobster/agents/machine_learning/py.typed, packages/lobster-proteomics/lobster/agents/proteomics/py.typed, packages/lobster-research/lobster/agents/data_expert/py.typed, packages/lobster-research/lobster/agents/research/py.typed, packages/lobster-structural-viz/lobster/agents/py.typed, packages/lobster-transcriptomics/lobster/agents/transcriptomics/py.typed, packages/lobster-visualization/lobster/agents/py.typed)
52.8/55Manageable file sizes43/1,061 source files over 60KB
Inputs used
primary_languagePython
largest_source_bytes171,948
source_files_sampled1,061
oversized_source_files43

Key facts

42GitHub stars
2contributors
814commits, last 12 months
5days since last push
56releases
1bus factor
1open issues
Go, PyPIpackage ecosystems

Data collection warnings

  • Could not fetch go package 'github.com/the-omics-os/lobster-tui' from its registry

More detail

OpenSSF Scorecard 3.4 / 10
3.4aggregate

Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).Scorecard v5.5.0 · 2026-07-15 13:15 UTC

10Binary-Artifactsno binaries found in the repo
0Branch-Protectionbranch protection not enabled on development/release branches
10CI-Tests2 out of 2 merged PRs checked by a CI test -- score normalized to 10
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
0Code-ReviewFound 0/30 approved changesets -- score normalized to 0
3Contributorsproject has 1 contributing companies or organizations -- score normalized to 3
10Dangerous-Workflowno dangerous workflow patterns detected
0Dependency-Update-Toolno update tool detected
0Fuzzingproject is not fuzzed
9Licenselicense file detected
10Maintained30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
10Packagingpackaging workflow detected
0Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 0
0SASTSAST tool is not run on all commits -- score normalized to 0
0Security-Policysecurity policy file not detected
0Signed-ReleasesProject has not signed or included provenance with any releases.
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
0Vulnerabilities149 existing vulnerabilities detected
Direct dependencies 42
RegistryPackageVersion constraintManifest
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Gogithub.com/alecthomas/chroma/v2v2.14.0lobster-tui/go.mod
Gogithub.com/charmbracelet/glamourv0.10.0lobster-tui/go.mod
Gogolang.org/x/termv0.40.0lobster-tui/go.mod
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PyPIh5py>=3.9.0pyproject.toml
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PyPIlobster-ai-tui~=1.1.0pyproject.toml
All dependencies 530

Full resolved dependency set from the GitHub dependency graph: 53 direct and 477 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.

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PyPIimportlib-metadata8.7.0indirect
PyPIimportlib-resources6.5.2indirect
PyPIiniconfig2.3.0indirect
PyPIinterface-meta1.3.0indirect
PyPIinterpretindirect
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PyPIisort7.0.0indirect
PyPIjaraco-classes3.4.0indirect
PyPIjaraco-context6.0.1indirect
PyPIjaraco-functools4.3.0indirect
PyPIjeepney0.9.0indirect
PyPIjiter0.12.0indirect
PyPIjmespath1.0.1indirect
PyPIjoblib1.5.2indirect
PyPIjsonlines4.0.0indirect
PyPIjsonpatch1.33indirect
PyPIjsonpointer3.0.0indirect
PyPIjsonref1.1.0indirect
PyPIjsonschema4.25.1indirect
PyPIjsonschema-specifications2025.9.1indirect
PyPIjupyter-client8.8.0indirect
PyPIjupyter-core5.9.1indirect
PyPIkeyring25.7.0indirect
PyPIkiwisolver1.4.9indirect
PyPIkubernetes35.0.0indirect
PyPIlangchain1.2.10indirect
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PyPIlangchain-azure-ai1.0.3indirect
PyPIlangchain-google-genai4.2.0indirect
PyPIlangchain-ollama0.3.10indirect
PyPIlangchain-openai1.1.9indirect
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PyPIlanggraph-checkpoint2.1.2indirect
PyPIlanggraph-prebuilt1.0.7indirect
PyPIlanggraph-sdk0.3.6indirect
PyPIlangsmith0.3.45indirect
PyPIlangsmith0.4.43indirect
PyPIlatex2mathml3.78.1indirect
PyPIlazy-loader0.4indirect
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PyPIleidenalgindirect
PyPIleidenalg0.11.0indirect
PyPIlifelinesindirect
PyPIlifelines0.30.1indirect
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PyPIlobster-aiindirect
PyPIlobster-drug-discoveryindirect
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PyPIlobster-vector1.1.420indirect
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PyPIlogistro2.0.1indirect
PyPImarkdown3.10indirect
PyPImarkdown-it-py4.0.0indirect
PyPImarko2.2.1indirect
PyPImarkupsafe3.0.3indirect
PyPImccabe0.7.0indirect
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PyPImdurl0.1.2indirect
PyPImeekoindirect
PyPImeeko0.7.1indirect
PyPImemory-profiler0.61.0indirect
PyPImergedeep1.3.4indirect
PyPImkdocs1.6.1indirect
PyPImkdocs-get-deps0.2.0indirect
PyPImkdocs-material9.7.0indirect
PyPImkdocs-material-extensions1.3.1indirect
PyPImmh35.2.0indirect
PyPImofapy2indirect
PyPImore-itertools10.8.0indirect
PyPImoto5.1.17indirect
PyPImpire2.10.2indirect
PyPImpmath1.3.0indirect
PyPImsal1.34.0indirect
PyPImsal-extensions1.3.1indirect
PyPImsgpack1.1.2indirect
PyPImultidict6.7.0indirect
PyPImultipledispatch1.0.0indirect
PyPImultiprocess0.70.18indirect
PyPImypy1.18.2indirect
PyPImypy-extensions1.1.0indirect
PyPInarwhals2.12.0indirect
PyPInatsort8.4.0indirect
PyPInbclient0.10.2indirect
PyPIndindex1.10.0indirect
PyPInetworkxindirect
PyPInetworkx3.5indirect
PyPInh30.3.2indirect
PyPInodeenv1.9.1indirect
PyPInumba0.61.2indirect
PyPInumcodecs0.16.3indirect
PyPInumexpr2.14.1indirect
PyPInvidia-cublas-cu1212.8.4.1indirect
PyPInvidia-cuda-cupti-cu1212.8.90indirect
PyPInvidia-cuda-nvrtc-cu1212.8.93indirect
PyPInvidia-cuda-runtime-cu1212.8.90indirect
PyPInvidia-cudnn-cu129.10.2.21indirect
PyPInvidia-cufft-cu1211.3.3.83indirect
PyPInvidia-cufile-cu121.13.1.3indirect
PyPInvidia-curand-cu1210.3.9.90indirect
PyPInvidia-cusolver-cu1211.7.3.90indirect
PyPInvidia-cusparse-cu1212.5.8.93indirect
PyPInvidia-cusparselt-cu120.7.1indirect
PyPInvidia-nccl-cu122.27.5indirect
PyPInvidia-nvjitlink-cu1212.8.93indirect
PyPInvidia-nvshmem-cu123.3.20indirect
PyPInvidia-nvtx-cu1212.8.90indirect
PyPIoauthlib3.3.1indirect
PyPIobonetindirect
PyPIobonet1.1.1indirect
PyPIocrmac1.0.0indirect
PyPIollama0.6.1indirect
PyPIomegaconf2.3.0indirect
PyPIonnxruntime1.24.2indirect
PyPIopenaiindirect
PyPIopenai2.8.1indirect
PyPIopencv-python4.11.0.86indirect
PyPIopentelemetry-api1.38.0indirect
PyPIopentelemetry-exporter-otlp-proto-common1.38.0indirect
PyPIopentelemetry-exporter-otlp-proto-grpc1.38.0indirect
PyPIopentelemetry-exporter-otlp-proto-http1.38.0indirect
PyPIopentelemetry-proto1.38.0indirect
PyPIopentelemetry-sdk1.38.0indirect
PyPIopentelemetry-semantic-conventions0.59b0indirect
PyPIorjson3.11.4indirect
PyPIormsgpack1.12.0indirect
PyPIoverrides7.7.0indirect
PyPIpaginate0.5.7indirect
PyPIpartd1.4.2indirect
PyPIpathspec0.12.1indirect
PyPIpatsy1.0.2indirect
PyPIpeptidesindirect
PyPIpeptides0.5.0indirect
PyPIpillow11.3.0indirect
PyPIpip26.0.1indirect
PyPIpipdeptree2.30.0indirect
PyPIplatformdirs4.5.0indirect
PyPIpluggy1.6.0indirect
PyPIpolars1.35.2indirect
PyPIpolars-runtime-321.35.2indirect
PyPIpolyfactory3.0.0indirect
PyPIposthog5.4.0indirect
PyPIpre-commit4.4.0indirect
PyPIpropcache0.4.1indirect
PyPIprotobuf6.33.1indirect
PyPIpy-cpuinfo9.0.0indirect
PyPIpyarrow22.0.0indirect
PyPIpyasn10.6.2indirect
PyPIpyasn1-modules0.4.2indirect
PyPIpybase641.4.3indirect
PyPIpyclipper1.3.0.post6indirect
PyPIpycodestyle2.14.0indirect
PyPIpycparser2.23indirect
PyPIpydanticindirect
PyPIpydantic2.12.4indirect
PyPIpydantic-core2.41.5indirect
PyPIpydantic-settings2.12.0indirect
PyPIpydeseq2indirect
PyPIpydeseq20.5.2indirect
PyPIpyflakes3.4.0indirect
PyPIpygments2.19.2indirect
PyPIpyjwt2.11.0indirect
PyPIpylatexenc2.10indirect
PyPIpylint4.0.3indirect
PyPIpymdown-extensions10.17.1indirect
PyPIpymmh30.0.5indirect
PyPIpynndescent0.5.13indirect
PyPIpyobjc-core12.1indirect
PyPIpyobjc-framework-cocoa12.1indirect
PyPIpyobjc-framework-coreml12.1indirect
PyPIpyobjc-framework-quartz12.1indirect
PyPIpyobjc-framework-vision12.1indirect
PyPIpyparsing3.2.5indirect
PyPIpypdfium24.30.0indirect
PyPIpypika0.51.1indirect
PyPIpyproject-hooks1.2.0indirect
PyPIpyreadline33.5.4indirect
PyPIpytestindirect
PyPIpytest9.0.1indirect
PyPIpytest-asyncio1.3.0indirect
PyPIpytest-benchmark5.2.3indirect
PyPIpytest-covindirect
PyPIpytest-cov7.0.0indirect
PyPIpytest-html4.1.1indirect
PyPIpytest-json-report1.5.0indirect
PyPIpytest-metadata3.1.1indirect
PyPIpytest-mockindirect
PyPIpytest-mock3.15.1indirect
PyPIpytest-timeout2.4.0indirect
PyPIpytest-xdist3.8.0indirect
PyPIpython-dateutil2.9.0.post0indirect
PyPIpython-docx1.2.0indirect
PyPIpython-multipart0.0.20indirect
PyPIpython-pptx1.0.2indirect
PyPIpytokens0.3.0indirect
PyPIpytz2025.2indirect
PyPIpywin32311indirect
PyPIpywin32-ctypes0.2.3indirect
PyPIpyyaml6.0.3indirect
PyPIpyyaml-env-tag1.1indirect
PyPIpyzmq27.1.0indirect
PyPIrapidfuzzindirect
PyPIrapidocr3.4.2indirect
PyPIrdkitindirect
PyPIrdkit2025.9.6indirect
PyPIreadme-renderer44.0indirect
PyPIredis7.0.1indirect
PyPIreferencing0.37.0indirect
PyPIregex2025.11.3indirect
PyPIrequests-oauthlib2.0.0indirect
PyPIrequests-toolbelt1.0.0indirect
PyPIresponses0.25.8indirect
PyPIrfc39862.0.0indirect
PyPIrispy0.10.0indirect
PyPIrpds-py0.29.0indirect
PyPIrsa4.9.1indirect
PyPIrtree1.4.1indirect
PyPIruff0.14.5indirect
PyPIs3transfer0.16.0indirect
PyPIsafetensors0.6.2indirect
PyPIscanpyindirect
PyPIscanpy1.11.5indirect
PyPIscikit-image0.25.2indirect
PyPIscikit-miscindirect
PyPIscikit-misc0.5.2indirect
PyPIscikit-survivalindirect
PyPIscrubletindirect
PyPIscrublet0.2.3indirect
PyPIscvi-toolsindirect
PyPIseaborn0.13.2indirect
PyPIsecretstorage3.4.1indirect
PyPIsemchunk2.2.2indirect
PyPIsentence-transformersindirect
PyPIsentence-transformers5.4.1indirect
PyPIsession-info1.0.1indirect
PyPIsession-info20.2.3indirect
PyPIsetuptoolsindirect
PyPIsetuptools80.9.0indirect
PyPIsgkitindirect
PyPIsgkit0.8.0indirect
PyPIshapindirect
PyPIshapely2.1.2indirect
PyPIshellingham1.5.4indirect
PyPIsimplejson3.20.2indirect
PyPIsix1.17.0indirect
PyPIsniffio1.3.1indirect
PyPIsortedcontainers2.4.0indirect
PyPIsoupsieve2.8indirect
PyPIsparse0.17.0indirect
PyPIstarlette0.49.3indirect
PyPIstdlib-list0.12.0indirect
PyPIstevedore5.5.0indirect
PyPIsympy1.14.0indirect
PyPItables3.10.2indirect
PyPItblib3.2.2indirect
PyPItenacity9.1.2indirect
PyPItexttable1.7.0indirect
PyPItextual6.7.1indirect
PyPIthreadpoolctl3.6.0indirect
PyPItifffile2025.10.16indirect
PyPItiktoken0.12.0indirect
PyPItinynetrc1.3.1indirect
PyPItokenizers0.22.1indirect
PyPItomlkit0.13.3indirect
PyPItoolz1.1.0indirect
PyPItorchindirect
PyPItorch2.9.1indirect
PyPItorchvision0.24.1indirect
PyPItornado6.5.2indirect
PyPItqdm4.67.1indirect
PyPItraitlets5.14.3indirect
PyPItransformersindirect
PyPItransformers4.57.1indirect
PyPItree-sitter0.25.2indirect
PyPItree-sitter-c0.24.1indirect
PyPItree-sitter-java0.23.5indirect
PyPItree-sitter-javascript0.25.0indirect
PyPItree-sitter-python0.25.0indirect
PyPItree-sitter-typescript0.23.2indirect
PyPItriton3.5.1indirect
PyPItwine6.2.0indirect
PyPItypes-requests2.33.0.20260408indirect
PyPItyping-extensions4.15.0indirect
PyPItyping-inspection0.4.2indirect
PyPItzdata2025.2indirect
PyPIuc-micro-py1.0.3indirect
PyPIumap-learn0.5.9.post2indirect
PyPIurllib32.5.0indirect
PyPIuuid-utils0.14.0indirect
PyPIuvicorn0.38.0indirect
PyPIuvloop0.22.1indirect
PyPIvinaindirect
PyPIvina1.2.7indirect
PyPIvirtualenv20.35.4indirect
PyPIwatchdog6.0.0indirect
PyPIwatchfiles1.1.1indirect
PyPIwcwidth0.2.14indirect
PyPIwebsocket-client1.9.0indirect
PyPIwebsockets15.0.1indirect
PyPIwerkzeug3.1.3indirect
PyPIwheelindirect
PyPIwheel0.46.3indirect
PyPIwrapt1.17.3indirect
PyPIxarrayindirect
PyPIxarray2025.11.0indirect
PyPIxgboostindirect
PyPIxlsxwriter3.2.9indirect
PyPIxxhash3.6.0indirect
PyPIyarl1.22.0indirect
PyPIzarr3.1.3indirect
PyPIzict3.0.0indirect
PyPIzipp3.23.0indirect
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Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v2.10.0, schema v0.11.0 — full methodology · metrics wiki.

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