公开记录存在风险
软件健康报告模式 0.27.0 · 指标 1.13.0 · 2026-07-26 00:05 UTC
Teichlab / Genes2Genes
Aligning gene expression trajectories of single-cell reference and query systems
Teichlab/Genes2Genes 的健康指数为 100 分中的 44 分，处于「存在风险」区间。 其得分最高的类别是Engineering Quality（58/100），最低的是AI Readiness（22/100）。 最近一次更新在 349 天前。 近期的大部分工作由 1 位贡献者完成。
44
总分 / 100软件健康指数
指标归入加权类别，统一采用 1–100 量表。总体分先取类别加权平均；当公开证据触发高风险司法辖区政策时，评级会按政策调整，并设置 49（有风险）的上限。AI 就绪度不计入总体分。
44
优秀85-100堪称典范；基本满足所有检验标准
良好70-84健康；仅有轻微不足
中等50-69可接受，但存在明显不足；建议进行审查
存在风险30-49存在重大薄弱环节；采用时应保持审慎
危急1-29问题严重（项目被弃置、仅有单一维护者、缺乏基本工程规范）
评分画像
每条轴代表一个类别。形状比平均值更重要——健康的对象会填满整个图形，而“一峰一谷”式画像意味着某一维度的优势正掩盖另一维度的风险。
所有权
软件包生态系统
| 注册表 | 软件包 | 版本 | 月下载量 | 版本数 | 最近发布 | 标签 |
|---|---|---|---|---|---|---|
| PyPI | genes2genes | 0.2.0 | - | 1 | 827 天前 | single-celltrajectory-alignmentdynamic-programming |
按类别列示的指标
活力
项目是否仍有生命——是否仍在编写代码，是否仍在发布版本？
22
开发活跃度
7危急
评分方式
| 3.6/36 | 推送新近度 — 最近一次推送于 349 天前 |
| 0.7/36 | 提交节奏 — 52 周中有 1 周有提交 |
| 2.7/18 | 提交量 — 最近一年 1 次提交 |
| 0/10 | OpenSSF Scorecard：Maintained — 0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0 |
所用输入
| commits_last_year | 1 |
| human_commit_share | 1 |
| days_since_last_push | 349 |
| active_weeks_last_year | 1 |
发布纪律
44存在风险
评分方式
| 27/27 | 有发布版本 — 已发布 1 个发布版本 |
| 0/36 | 发布时效 — 最近一次发布版本于 835 天前 |
| 12.6/27 | 发布节奏 — 节奏未知（仅一次发布） |
| 0/10 | OpenSSF Scorecard：Signed-Releases — 无数据 |
所用输入
| releases_count | 1 |
| latest_release_tag | v0.1.0 |
| releases_from_tags | 否 |
| days_since_latest_release | 835 |
| mean_days_between_releases | — |
已排除计分（无数据或不适用）：OpenSSF Scorecard：Signed-Releases。 其余权重已重新归一化。
社区与采用
项目是否拥有用户、下载量与关注度，并具备欢迎贡献者参与的配置？
45
流行度与采用
40存在风险
评分方式
| 31.5/60 | 星标 — 89 个星标 |
| 9/25 | 复刻 — 13 个复刻 |
| 0/15 | 关注者 — 2 位关注者 |
所用输入
| forks | 13 |
| stars | 89 |
| watchers | 2 |
| growth_state | unverified |
| growth_factor_pct | 100 |
| growth_unverified_reason | no_history |
社区健康
50中等
评分方式
| 22.5/22.5 | README |
| 22.5/22.5 | 许可证 — 可识别的许可证（MIT） |
| 0/18 | CONTRIBUTING 指南 |
| 0/13.5 | 行为准则 |
| 0/7.2 | 议题模板 |
| 0/6.3 | PR 模板 |
所用输入
| has_readme | 是 |
| has_license | 是 |
| has_contributing | 否 |
| has_issue_template | 否 |
| has_code_of_conduct | 否 |
| has_pull_request_template | 否 |
可持续性与治理
项目能否在其成员之外延续——巴士系数、响应能力、由谁支持，以及软件包的维护状况？
48
维护者韧性（巴士系数）
17危急
评分方式
| 9/54 | 巴士系数 — 1 位贡献者贡献了半数提交 |
| 0.8/22.5 | 提交分布 — 头号贡献者编写了 96% 的提交 |
| 4.1/13.5 | 贡献者广度 — 3 位贡献者 |
| 3/10 | OpenSSF Scorecard：Contributors — project has 1 contributing companies or organizations -- score normalized to 3 |
所用输入
| bus_factor | 1 |
| contributors_sampled | 3 |
| top_contributor_share | 0.963 |
议题与 PR 响应能力
58中等
评分方式
| 19.3/46.8 | 议题解决 — 41% 的议题已关闭 |
| 38.2/38.3 | PR 接受 — 已裁定的 PR 中 1/1 已合并 |
| 0/15 | OpenSSF Scorecard：Code-Review — Found 0/30 approved changesets -- score normalized to 0 |
所用输入
| merged_prs | 1 |
| open_issues | 10 |
| closed_issues | 7 |
| issue_closed_ratio | 0.412 |
| closed_unmerged_prs | 0 |
所有权与托管责任
73良好
评分方式
| 30/30 | 所有权背书 — 组织持有 |
| 0/20 | 已验证域名 |
| 18.3/25 | 所有者影响力 — Teichlab 有 348 位关注者 |
| 25/25 | 既往记录 — 87 个公开仓库，账户约 10 年 |
所用输入
| followers | 348 |
| owner_type | Organization |
| is_verified | — |
| owner_login | Teichlab |
| public_repos | 87 |
| account_age_days | 4,008 |
软件包维护
53中等
评分方式
| 25/25 | 已发布且可解析 — pypi 上有 1 个软件包 |
| 4/35 | 发布时效 — 最近一次发布于 827 天前 |
| 4/20 | 版本历史 — 1 个已发布版本 |
| 20/20 | 未被弃用 — 活跃，未被弃用或撤回 |
所用输入
| packages | genes2genes |
| ecosystems | pypi |
| any_deprecated | 否 |
| min_days_since_publish | 827 |
工程质量
基础的工程与文档实践是否到位？
58
工程实践
30存在风险
评分方式
| 24/24 | CI 工作流 — 1 个工作流 |
| 0/24 | 存在测试 |
| 0/16 | Linter 配置 |
| 0/9.6 | Pre-commit 钩子 |
| 0/6.4 | .editorconfig |
| 0/20 | OpenSSF Scorecard：CI-Tests — 无数据 |
所用输入
| has_ci | 是 |
| has_tests | 否 |
| has_editorconfig | 否 |
| has_linter_config | 否 |
| has_precommit_config | 否 |
已排除计分（无数据或不适用）：OpenSSF Scorecard：CI-Tests。 其余权重已重新归一化。
文档
100优秀
评分方式
| 30/30 | README |
| 25/25 | 文档目录 |
| 15/15 | 文档 / 主页站点 — https://teichlab.github.io/Genes2Genes/ |
| 10/10 | 仓库描述 |
| 10/10 | 主题标签 — 9 个主题标签 |
| 10/10 | Wiki |
所用输入
| topics | dynamic-programming, minimum-message-length, bayesian-inference, python, scrna-seq, single-cell, human-cell-atlas, pseudotime-trajectory, trajectory-alignment |
| has_wiki | 是 |
| homepage | https://teichlab.github.io/Genes2Genes/ |
| has_readme | 是 |
| has_docs_dir | 是 |
| has_description | 是 |
安全
可见的安全与供应链实践是否稳固，且不存在未解决的高风险司法辖区暴露？
47
安全态势
34存在风险
评分方式
| 7.5/7.5 | Binary-Artifacts — no binaries found in the repo |
| 0/7.5 | Branch-Protection — 无数据 |
| 0/2.5 | CI-Tests — 无数据 |
| 0/2.5 | CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected |
| 0/7.5 | Code-Review — Found 0/30 approved changesets -- score normalized to 0 |
| 0.8/2.5 | Contributors — project has 1 contributing companies or organizations -- score normalized to 3 |
| 10/10 | Dangerous-Workflow — no dangerous workflow patterns detected |
| 0/7.5 | Dependency-Update-Tool — no update tool detected |
| 0/5 | Fuzzing — project is not fuzzed |
| 2.5/2.5 | 许可证 — license file detected |
| 0/7.5 | Maintained — 0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0 |
| 0/5 | Packaging — 无数据 |
| 0/5 | Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
| 0/5 | SAST — no SAST tool detected |
| 0/5 | Security-Policy — security policy file not detected |
| 0/7.5 | Signed-Releases — 无数据 |
| 0/7.5 | Token-Permissions — detected GitHub workflow tokens with excessive permissions |
| 7.5/7.5 | Vulnerabilities — 0 existing vulnerabilities detected |
所用输入
| source | openssf_scorecard |
| checks_evaluated | 14 |
| scorecard_version | v5.5.0 |
| checks_inconclusive | 4 |
| scorecard_aggregate | 3.4 |
已排除计分（无数据或不适用）：branch_protection, ci_tests, packaging, signed_releases。 其余权重已重新归一化。
依赖安全公告
100优秀
评分方式
| 35/35 | 直接依赖不含已知公告 — 没有直接依赖携带已知公告 |
| 25/25 | 间接依赖不含已知公告 — 没有间接依赖携带已知公告 |
| 0/40 | 没有长期未处理的公告 — 没有公告带有发布日期 |
所用输入
| source | osv |
| advisories | 0 |
| affected_packages | 0 |
| assessed_packages | 45 |
| unassessed_packages | 0 |
| affected_by_severity | none |
| direct_affected_packages | 0 |
已排除计分（无数据或不适用）：没有长期未处理的公告。 其余权重已重新归一化。 比对的是 pypi:genes2genes@0.2.0 的运行时依赖闭包——安装已发布的软件包时真正被拉取进来的内容——共 45 个软件包。 未对可达性进行分析。
AI 就绪度
该仓库在多大程度上具备与 AI 编码代理协同开发与维护的条件？这是一枚独立的实验性徽章——权重为 0.0，因此单独呈现，不影响总体健康评分。
22
AI 代理上下文与指引
1危急
评分方式
| 0/45 | 代理指令 — 没有 CLAUDE.md / AGENTS.md / 编辑器规则 |
| 0/15 | 机器可读文档（llms.txt） |
| 0.5/40 | 可读的提交历史 — 100 次人类提交中有 1 次说明了意图（结构化标题或解释性正文） |
所用输入
| has_llms_txt | 否 |
| legible_history_share | 0.01 |
| agent_instruction_files | — |
| agent_instruction_max_bytes | — |
评分方式
| 18/18 | 一条命令的引导启动 — doc/Makefile |
| 0/22 | 自动化测试 |
| 0/11 | Lint / 格式化配置 |
| 0/11 | 静态类型检查 |
| 0/10 | 可复现环境 |
| 0/10 | 已体现的代理实践 — 最近 100 次提交中没有代理编写的提交 |
| 0/8 | 自动化维护 — 未观察到自动依赖更新 |
| 0/10 | OpenSSF Scorecard：Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
所用输入
| has_nix | 否 |
| has_tests | 否 |
| lockfiles | — |
| has_dockerfile | 否 |
| typed_language | 否 |
| bootstrap_files | doc/Makefile |
| has_devcontainer | 否 |
| has_linter_config | 否 |
| typecheck_configs | — |
| agent_commit_share | 0 |
| toolchain_manifests | — |
| dependency_bot_commit_share | 0 |
面向模型的代码可读性
55中等
评分方式
| 0/45 | 可类型检查的代码 — Jupyter Notebook，未配置类型检查 |
| 55/55 | 可控的文件大小 — 采样的 12 个源文件中有 0 个超过 60KB |
所用输入
| primary_language | Jupyter Notebook |
| largest_source_bytes | 38,805 |
| source_files_sampled | 12 |
| oversized_source_files | 0 |
机器可读接口
40存在风险
评分方式
| 0/40 | API 模式（OpenAPI/GraphQL/proto） |
| 0/20 | MCP 服务器 |
| 40/40 | 可运行示例 — notebooks |
所用输入
| example_dirs | notebooks |
| has_mcp_signal | 否 |
| api_schema_files | — |
关键数据
89GitHub 星标
3贡献者
1最近 12 个月提交数
349距最近推送天数
1发布版本数
1巴士系数（bus factor）
10开放议题
PyPI软件包生态系统数
数据采集警告
- Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
更多细节
Star 与 Fork 历史 0 ★ / 13 ⇿
0Star
13Fork
1发布
每颗 star 和每个 fork 的添加时间，来自 GitHub 并按天汇总。累计增长位于其构成来源——每日新增——的正上方，二者可相互对照：稳定的自然增长与短暂的突增形态截然不同。当这一差别可被衡量时，它会作为增长真实性予以报告。
主版本 0次版本 1修订 0
每个点涵盖 3 天。
OpenSSF Scorecard 3.4 / 10
3.4综合
来自开源项目 OpenSSF Scorecard 的独立、工具无关的安全评估。每项检查奖励的是安全实践本身，而非特定供应商的工具。Scorecard 无法判定的检查项标记为 不适用，并从安全评分中剔除（绝不按零分计）。
| 10 | Binary-Artifacts | no binaries found in the repo |
| 不适用 | Branch-Protection | internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md |
| 不适用 | CI-Tests | no pull request found |
| 0 | CII-Best-Practices | no effort to earn an OpenSSF best practices badge detected |
| 0 | Code-Review | Found 0/30 approved changesets -- score normalized to 0 |
| 3 | Contributors | project has 1 contributing companies or organizations -- score normalized to 3 |
| 10 | Dangerous-Workflow | no dangerous workflow patterns detected |
| 0 | Dependency-Update-Tool | no update tool detected |
| 0 | Fuzzing | project is not fuzzed |
| 10 | License | license file detected |
| 0 | Maintained | 0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0 |
| 不适用 | Packaging | packaging workflow not detected |
| 0 | Pinned-Dependencies | dependency not pinned by hash detected -- score normalized to 0 |
| 0 | SAST | no SAST tool detected |
| 0 | Security-Policy | security policy file not detected |
| 不适用 | Signed-Releases | no releases found |
| 0 | Token-Permissions | detected GitHub workflow tokens with excessive permissions |
| 10 | Vulnerabilities | 0 existing vulnerabilities detected |
直接依赖 14
| 注册表 | 软件包 | 版本约束 | 清单文件 |
|---|---|---|---|
| PyPI | anndata | — | pyproject.toml |
| PyPI | regex | — | pyproject.toml |
| PyPI | tabulate | — | pyproject.toml |
| PyPI | gseapy | — | pyproject.toml |
| PyPI | blitzgsea | — | pyproject.toml |
| PyPI | torch | — | pyproject.toml |
| PyPI | scipy | — | pyproject.toml |
| PyPI | scikit-learn | — | pyproject.toml |
| PyPI | tqdm | — | pyproject.toml |
| PyPI | matplotlib | — | pyproject.toml |
| PyPI | numpy | <2 | pyproject.toml |
| PyPI | pandas | >=2.0.3 | pyproject.toml |
| PyPI | seaborn | >=0.12.2 | pyproject.toml |
| PyPI | leven | — | pyproject.toml |
全部依赖 14
来自 GitHub 依赖图的完整解析依赖集合：14 个直接依赖与 0 个间接（传递）软件包。仓库提交锁文件时，传递闭包才是完整的。
| 注册表 | 软件包 | 版本 | 关系 |
|---|---|---|---|
| PyPI | anndata | — | 直接 |
| PyPI | blitzgsea | — | 直接 |
| PyPI | gseapy | — | 直接 |
| PyPI | leven | — | 直接 |
| PyPI | matplotlib | — | 直接 |
| PyPI | numpy | — | 直接 |
| PyPI | pandas | — | 直接 |
| PyPI | regex | — | 直接 |
| PyPI | scikit-learn | — | 直接 |
| PyPI | scipy | — | 直接 |
| PyPI | seaborn | — | 直接 |
| PyPI | tabulate | — | 直接 |
| PyPI | torch | — | 直接 |
| PyPI | tqdm | — | 直接 |
依赖安全公告 0
安装 pypi:genes2genes@0.2.0 会引入 45 个包（直接与传递）：其中 0 个存在已知公告，0 个为直接依赖。
没有已知公告影响已评估的依赖。
公告表示依赖图中记录的版本落入某条公告的受影响范围。可达性未经分析，且依赖图包含开发与测试的版本固定——某项发现可能只涉及工具链而非交付的软件。
原始 JSON 报告 机器可读
{
"data": {
"repo": {
"topics": [
"dynamic-programming",
"minimum-message-length",
"bayesian-inference",
"python",
"scrna-seq",
"single-cell",
"human-cell-atlas",
"pseudotime-trajectory",
"trajectory-alignment"
],
"is_fork": false,
"size_kb": 36205,
"has_wiki": true,
"homepage": "https://teichlab.github.io/Genes2Genes/",
"languages": {
"Python": 152046,
"Jupyter Notebook": 1524009
},
"pushed_at": "2025-08-10T13:14:13Z",
"created_at": "2022-10-25T15:23:27Z",
"owner_type": "Organization",
"updated_at": "2026-06-19T11:34:38Z",
"description": "Aligning gene expression trajectories of single-cell reference and query systems",
"is_archived": false,
"is_disabled": false,
"license_spdx": "MIT",
"default_branch": "main",
"license_spdx_raw": "MIT",
"primary_language": "Jupyter Notebook",
"significant_languages": [
"Jupyter Notebook"
]
},
"owner": {
"blog": "www.teichlab.org",
"name": "Teichmann Group",
"type": "Organization",
"login": "Teichlab",
"company": null,
"location": "Cambridge, UK",
"followers": 348,
"avatar_url": "https://avatars.githubusercontent.com/u/13640351?v=4",
"created_at": "2015-08-04T09:56:05Z",
"is_verified": null,
"public_repos": 87,
"account_age_days": 4008
},
"license": {
"state": "standard",
"spdx_id": "MIT",
"raw_spdx": "MIT",
"file_present": true,
"scorecard_found": true,
"profile_has_license": true
},
"activity": {
"releases": [
{
"tag": "v0.1.0",
"kind": "minor",
"published_at": "2024-04-11T17:57:59Z"
}
],
"recent_commits": [
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