#single-cell

A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) and Proximity Network (PNA) assays.

LIANA+: an all-in-one framework for cell-cell communication

Python package to perform enrichment analysis from omics data.

rapids-singlecell: GPU-accelerated framework for scRNA analysis

A universal toolkit for upstream processing of long RNA reads

Vitessce is a visual integration tool for exploration of spatial single-cell experiments.

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Cell type annotation for single-cell RNA-seq using multi-LLM consensus