原始 JSON 报告 机器可读
{
"data": {
"repo": {
"topics": [],
"is_fork": false,
"size_kb": 1437,
"has_wiki": false,
"homepage": "https://scib-metrics.readthedocs.io/",
"languages": {
"Python": 121140
},
"pushed_at": "2026-07-21T06:42:34Z",
"created_at": "2022-10-03T01:53:06Z",
"owner_type": "Organization",
"updated_at": "2026-07-21T07:25:38Z",
"description": "Accelerated, Python-only, single-cell integration benchmarking metrics",
"is_archived": false,
"is_disabled": false,
"license_spdx": "BSD-3-Clause",
"default_branch": "main",
"license_spdx_raw": "BSD-3-Clause",
"primary_language": "Python",
"significant_languages": [
"Python"
]
},
"owner": {
"blog": "https://www.weizmann.ac.il/immunology/yosef/",
"name": "Yosef Lab",
"type": "Organization",
"login": "YosefLab",
"company": null,
"location": "Israel",
"followers": 138,
"avatar_url": "https://avatars.githubusercontent.com/u/13837262?v=4",
"created_at": "2015-08-17T17:07:24Z",
"is_verified": null,
"public_repos": 73,
"account_age_days": 3991
},
"license": {
"state": "standard",
"spdx_id": "BSD-3-Clause",
"raw_spdx": "BSD-3-Clause",
"file_present": true,
"scorecard_found": true,
"profile_has_license": true
},
"activity": {
"releases": [
{
"tag": "v0.5.10",
"kind": "patch",
"published_at": "2026-07-13T07:05:47Z"
},
{
"tag": "v0.5.9",
"kind": "patch",
"published_at": "2026-02-26T08:11:41Z"
},
{
"tag": "v0.5.8",
"kind": "patch",
"published_at": "2026-02-06T09:57:47Z"
},
{
"tag": "v0.5.7",
"kind": "patch",
"published_at": "2025-09-14T07:22:28Z"
},
{
"tag": "v0.5.6",
"kind": "patch",
"published_at": "2025-07-08T12:30:38Z"
},
{
"tag": "v0.5.5",
"kind": "patch",
"published_at": "2025-06-03T11:04:57Z"
},
{
"tag": "v0.5.4",
"kind": "patch",
"published_at": "2025-04-23T06:16:28Z"
},
{
"tag": "v0.5.3",
"kind": "patch",
"published_at": "2025-02-17T10:04:09Z"
},
{
"tag": "v0.5.2",
"kind": "patch",
"published_at": "2025-02-12T22:19:04Z"
},
{
"tag": "v0.5.1",
"kind": "patch",
"published_at": "2024-02-23T22:18:26Z"
},
{
"tag": "v0.5.0",
"kind": "minor",
"published_at": "2024-01-04T18:38:46Z"
},
{
"tag": "0.4.1",
"kind": "patch",
"published_at": "2023-10-08T20:40:57Z"
},
{
"tag": "0.4.0",
"kind": "minor",
"published_at": "2023-09-18T22:46:24Z"
},
{
"tag": "0.3.3",
"kind": "patch",
"published_at": "2023-03-29T19:04:51Z"
},
{
"tag": "0.3.2",
"kind": "patch",
"published_at": "2023-03-13T17:27:13Z"
},
{
"tag": "0.3.1",
"kind": "patch",
"published_at": "2023-02-16T18:06:54Z"
},
{
"tag": "0.3.0",
"kind": "minor",
"published_at": "2023-02-16T17:08:49Z"
},
{
"tag": "0.2.0",
"kind": "minor",
"published_at": "2023-02-03T17:52:06Z"
},
{
"tag": "0.1.1",
"kind": "patch",
"published_at": "2023-01-04T18:51:35Z"
},
{
"tag": "0.1.0",
"kind": "minor",
"published_at": "2023-01-02T20:28:23Z"
},
{
"tag": "0.0.9",
"kind": "patch",
"published_at": "2022-12-17T03:45:40Z"
},
{
"tag": "0.0.8",
"kind": "patch",
"published_at": "2022-11-18T19:58:25Z"
},
{
"tag": "0.0.7",
"kind": "patch",
"published_at": "2022-10-31T20:27:52Z"
},
{
"tag": "0.0.6",
"kind": "patch",
"published_at": "2022-10-25T16:57:15Z"
},
{
"tag": "0.0.5",
"kind": "patch",
"published_at": "2022-10-25T05:44:14Z"
},
{
"tag": "0.0.4",
"kind": "patch",
"published_at": "2022-10-11T03:38:21Z"
},
{
"tag": "0.0.3",
"kind": "patch",
"published_at": "2022-10-10T03:05:41Z"
},
{
"tag": "0.0.2",
"kind": "patch",
"published_at": "2022-10-03T18:59:51Z"
},
{
"tag": "0.0.1",
"kind": "patch",
"published_at": "2022-10-03T18:52:05Z"
}
],
"recent_commits": [
{
"oid": "ad2afce6acfc09318f92c516e011e86b851413c3",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.21 → v0.15.22](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.21...v0.15.22)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#279)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-07-21T06:42:32Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d435d7aebefd6cfbb751973c70390fa4b564f396",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.20 → v0.15.21](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.20...v0.15.21)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#277)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-07-14T05:53:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cdeaaa5fb041e17ea396712d3e854bce485b499b",
"body": null,
"is_bot": false,
"headline": "Also updated to codecov/codecov-action@v6",
"author_name": "ori-kron-wis",
"author_login": "ori-kron-wis",
"committed_at": "2026-07-13T07:19:33Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8a6a855f2bfdaead2408a7b041686882b4ab6c99",
"body": "* ci: update github workflows\n\n* also fixed anndata 0.13 and pandas 3 updated api",
"is_bot": false,
"headline": "ci: update github workflows (#276)",
"author_name": "Ori Kronfeld",
"author_login": "ori-kron-wis",
"committed_at": "2026-07-13T07:01:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "132db5b6f11a7e71b64a20afb7b5dff72c371849",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.18 → v0.15.20](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.18...v0.15.20)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#275)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-06-30T07:07:23Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0be2f216852c3d26468409c1557f398d2fbfdee6",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.17 → v0.15.18](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.17...v0.15.18)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\nCo-authored-by: Ori Kronfeld <ori.kronfeld@weizmann.ac.il>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#274)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-06-23T08:25:35Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d62345481a20066846c97921eb978812eacf8700",
"body": null,
"is_bot": false,
"headline": "Update Read the Docs configuration for new versions",
"author_name": "Ori Kronfeld",
"author_login": "ori-kron-wis",
"committed_at": "2026-06-23T07:47:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "851c8e606dad7fa43d2da2b085d997cc96bd49be",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.16 → v0.15.17](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.16...v0.15.17)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#272)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-06-16T05:52:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2d3ce834887d0f5fa4acf65d3e7457d68625879c",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.15 → v0.15.16](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.15...v0.15.16)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#271)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-06-09T06:17:19Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d9fb5f849d1a292e8e685a2ce1a9cf3415056f78",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.14 → v0.15.15](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.14...v0.15.15)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#270)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-06-02T06:12:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "80a0723085913cc5ac2c63df29ea53bee69df992",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.13 → v0.15.14](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.13...v0.15.14)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#269)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-05-25T20:58:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "494f1109b948d5a750a958342d72a44ed38f62b9",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.12 → v0.15.13](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.12...v0.15.13)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#268)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-05-19T06:27:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e15177d634797751a2328af2df06469d71d226b4",
"body": null,
"is_bot": false,
"headline": "Bump version from 0.5.9 to 0.5.10",
"author_name": "Ori Kronfeld",
"author_login": "ori-kron-wis",
"committed_at": "2026-05-12T13:23:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "778f4c1f5ff7915b05f7548c9d911b50df0c6a5f",
"body": "* [pre-commit.ci] pre-commit autoupdate\n\nupdates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.11 → v0.15.12](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.11...v0.15.12)\n\n* Added support for HarmonyPy V2\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\nCo-authored-by: ori-kron-wis <ori.kronfeld@weizmann.ac.il>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#266)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-04-28T10:41:47Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6473ae23bc30c79e9c25380a0230508caa903cde",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.10 → v0.15.11](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.10...v0.15.11)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#265)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-04-23T07:15:38Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1fe209c1edea3699a6c4509355f866f7046a950e",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.9 → v0.15.10](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.9...v0.15.10)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#264)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-04-14T08:06:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f68d5b94c3e93e646fe6a0a7df1619ad1d345bf4",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.8 → v0.15.9](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.8...v0.15.9)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#263)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-04-09T09:58:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0006efa6ea7ab7409b0bc85757c1d55e883be669",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.7 → v0.15.8](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.7...v0.15.8)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#262)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-03-31T06:34:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "00661bb8cecfa4c4e9317721d1989ff015d34e1c",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.6 → v0.15.7](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.6...v0.15.7)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#261)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-03-24T08:10:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7bdb15a775053b080c109dc41956ed8492b13532",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.5 → v0.15.6](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.5...v0.15.6)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#260)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-03-17T07:36:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2c0ca5dd00c48e86ddd0904c543ac53875bf4a35",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.4 → v0.15.5](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.4...v0.15.5)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#258)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-03-09T21:25:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b381c920ef66d9ecd8410617d28c1432088e25d4",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.2 → v0.15.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.2...v0.15.4)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#257)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-03-03T06:46:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e22886e3053643a787903bdfc126a34ccd21cf03",
"body": "* Update changelog for kbet calculation fix\n\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\n\nfor more information, see https://pre-commit.ci\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": false,
"headline": "Update changelog for kbet calculation fix (#256)",
"author_name": "Ori Kronfeld",
"author_login": "ori-kron-wis",
"committed_at": "2026-02-26T08:05:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8eea92fd04c562ca3a825a2c92ebeb4269ae49a0",
"body": null,
"is_bot": false,
"headline": "Update CHANGELOG for version 0.5.9",
"author_name": "Ori Kronfeld",
"author_login": "ori-kron-wis",
"committed_at": "2026-02-26T08:03:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "93991f066bd0525b0f5e90d4e508e61e5534417b",
"body": null,
"is_bot": false,
"headline": "Bump version from 0.5.8 to 0.5.9",
"author_name": "Ori Kronfeld",
"author_login": "ori-kron-wis",
"committed_at": "2026-02-26T07:51:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "35232e59464b4654cc11f761ece9d6ac5403f5ef",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.1 → v0.15.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.1...v0.15.2)\n- [github.com/kynan/nbstripout: 0.9.0 → 0.9.1](https://github.com/kynan/nbstripout/compare/0.9.0...0.9.1)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#255)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-02-24T07:48:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0f10ca89b52eb3727fe31cfb097e925d8ea7c966",
"body": null,
"is_bot": false,
"headline": "update kbet calc with new numpy (#254)",
"author_name": "Ori Kronfeld",
"author_login": "ori-kron-wis",
"committed_at": "2026-02-22T15:18:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d89a8c2bb4175d13ca303804e4877a606c0d7fd5",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.15.0 → v0.15.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.0...v0.15.1)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#253)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-02-17T10:18:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7e4993376bc664f0062120784bdb348a6f7aaa02",
"body": "* [pre-commit.ci] pre-commit autoupdate\n\nupdates:\n- [github.com/astral-sh/ruff-pre-commit: v0.14.14 → v0.15.0](https://github.com/astral-sh/ruff-pre-commit/compare/v0.14.14...v0.15.0)\n\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\n\nfor more information, see https://pre-commit.ci\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#252)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-02-10T07:04:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "14c5e347b16f72381a92b74354a4e8119b862381",
"body": "Added citation information for scib-metrics and original benchmarking work.",
"is_bot": false,
"headline": "Update README with citation details",
"author_name": "Adam Gayoso",
"author_login": "adamgayoso",
"committed_at": "2026-02-06T10:05:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0d554a96805c35ba3d228e5e1fd844361ba816d1",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.14.13 → v0.14.14](https://github.com/astral-sh/ruff-pre-commit/compare/v0.14.13...v0.14.14)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#251)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-01-26T21:30:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "24e35fb69c00b9ab729f432207315c6d5757501f",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.14.11 → v0.14.13](https://github.com/astral-sh/ruff-pre-commit/compare/v0.14.11...v0.14.13)\n- [github.com/kynan/nbstripout: 0.8.2 → 0.9.0](https://github.com/kynan/nbstripout/compare/0.8.2...0.9.0)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#250)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-01-21T07:32:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e8af0b306c1600d3cdf903454db711da3d22491a",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.14.10 → v0.14.11](https://github.com/astral-sh/ruff-pre-commit/compare/v0.14.10...v0.14.11)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#249)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-01-12T20:41:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f5a9530792caa50e34451065254f2ddb73bd0886",
"body": "* [pre-commit.ci] pre-commit autoupdate\n\nupdates:\n- [github.com/astral-sh/ruff-pre-commit: v0.14.8 → v0.14.10](https://github.com/astral-sh/ruff-pre-commit/compare/v0.14.8...v0.14.10)\n\n* Update pyproject.toml\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\nCo-authored-by: Ori Kronfeld <ori.kronfeld@weizmann.ac.il>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#247)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-12-23T10:09:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "918e45a154130f20006044ce52aa10cba581e9b9",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.14.7 → v0.14.8](https://github.com/astral-sh/ruff-pre-commit/compare/v0.14.7...v0.14.8)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#246)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-12-08T21:41:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4ef9a52296238318433bfc9a10e59bf9076d0cc9",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.14.6 → v0.14.7](https://github.com/astral-sh/ruff-pre-commit/compare/v0.14.6...v0.14.7)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#245)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-12-02T07:29:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "366130096138df0484fe8fa8a179381410b43336",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.14.5 → v0.14.6](https://github.com/astral-sh/ruff-pre-commit/compare/v0.14.5...v0.14.6)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#244)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-11-25T07:20:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "66889d55020b9d54503d1e87936bf4e058b2b4f4",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.14.4 → v0.14.5](https://github.com/astral-sh/ruff-pre-commit/compare/v0.14.4...v0.14.5)\n- [github.com/kynan/nbstripout: 0.8.1 → 0.8.2](https://github.com/kynan/nbstripout/compare/0.8.1...0.8.2)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#243)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-11-18T09:54:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "db3df0b577cd75b80bf192371f17dfc8c81fb683",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.14.3 → v0.14.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.14.3...v0.14.4)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#242)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-11-11T07:51:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d709e227b19013cac48ecdb0cb15c8096fb1ffb8",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.14.2 → v0.14.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.14.2...v0.14.3)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#241)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-11-04T06:59:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c0b2d7f5bfd257932d6ad9659404b501f1939256",
"body": "* Added set seed for all leiden metric calcualtions options\n\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\n\nfor more information, see https://pre-commit.ci\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": false,
"headline": "Fix: set seed for Leiden clustering (#240)",
"author_name": "Ori Kronfeld",
"author_login": "ori-kron-wis",
"committed_at": "2025-10-30T06:53:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0404e63b35e526132b29aefa607093df7feaa324",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.14.1 → v0.14.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.14.1...v0.14.2)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#239)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-10-28T12:31:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5f806c3ed539d6367770e34ff418c4d7235455bf",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.14.0 → v0.14.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.14.0...v0.14.1)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#238)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-10-21T06:04:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a3a8da40a5c58bf19789de58966fb0d638a6290a",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.13.2 → v0.14.0](https://github.com/astral-sh/ruff-pre-commit/compare/v0.13.2...v0.14.0)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#237)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-10-15T07:39:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "42107f2450943aba526db3dd23434f49fef8a1fa",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.13.1 → v0.13.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.13.1...v0.13.2)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#235)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-09-30T06:07:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e450f9a56259d0a7197b53d90014fdacc7a39fee",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.13.0 → v0.13.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.13.0...v0.13.1)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#233)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-09-25T05:34:33Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b82f1b916ec288ae6f1da67ce3fef512cd0adb9b",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.12.12 → v0.13.0](https://github.com/astral-sh/ruff-pre-commit/compare/v0.12.12...v0.13.0)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#230)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-09-16T09:56:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "83de2a79a04bdbbb1a4b77b40e18af6f48c5d0fd",
"body": "…es + moving to py313 (#229)\n\n* added solver selection to benchmarker for arpack stability issues\n\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\n\nfor more information, see https://pre-commit.ci\n\n* also removed py3.10 and added py3.13\n\n* update RTD python ver\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": false,
"headline": "feat: added solver selection to benchmarker for arpack stability issu…",
"author_name": "Ori Kronfeld",
"author_login": "ori-kron-wis",
"committed_at": "2025-09-14T07:17:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2c0b934b6272ae9d55a68bcbd9b4690f5e2d81c8",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.12.10 → v0.12.12](https://github.com/astral-sh/ruff-pre-commit/compare/v0.12.10...v0.12.12)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#228)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-09-09T06:23:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "177dd252658fc2af059c3c21769a8d3bf721b796",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.12.9 → v0.12.10](https://github.com/astral-sh/ruff-pre-commit/compare/v0.12.9...v0.12.10)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#227)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-09-01T06:32:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "06a1f2c8c10d24ddb7c05d2871dd6114fb588a6c",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.12.8 → v0.12.9](https://github.com/astral-sh/ruff-pre-commit/compare/v0.12.8...v0.12.9)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#226)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-08-19T05:57:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bb473d4e03f0a37de93807dd44a0299c1ad8607a",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.12.7 → v0.12.8](https://github.com/astral-sh/ruff-pre-commit/compare/v0.12.7...v0.12.8)\n- [github.com/pre-commit/pre-commit-hooks: v5.0.0 → v6.0.0](https://github.com/pre-commit/pre-commit-hooks/compare/v5.0.0...v6.0.0)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#225)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-08-12T05:35:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b9590642a65224e2888e28e0699e0b194ae8aefb",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.12.5 → v0.12.7](https://github.com/astral-sh/ruff-pre-commit/compare/v0.12.5...v0.12.7)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#223)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-08-05T06:10:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f872405579c9b954f70ff248b9965c58c965e6b7",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.12.4 → v0.12.5](https://github.com/astral-sh/ruff-pre-commit/compare/v0.12.4...v0.12.5)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#222)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-07-31T10:01:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a79ad9fc94abac002cc335868e9c606ab3db85b4",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.12.3 → v0.12.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.12.3...v0.12.4)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#221)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-07-22T10:26:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4ec7832d385dbdcdc4b64f7826f413f831f5597c",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.12.2 → v0.12.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.12.2...v0.12.3)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#220)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-07-15T06:32:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "de7edbac0be6241c1229efee575730856d408e0f",
"body": "* adding BRAS to benchmarker\n\n* added to benchmarker\n\n* added a flag for _compute_neighbors\n\n* added a flag for _compute_neighbors\n\n* chanlog\n\n* chanlog",
"is_bot": false,
"headline": "feat: adding BRAS to benchmarker (#217)",
"author_name": "Ori Kronfeld",
"author_login": "ori-kron-wis",
"committed_at": "2025-07-08T12:29:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "872d50eafba1d8a48958fc0d5ae620fb9fc3f9d0",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.12.1 → v0.12.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.12.1...v0.12.2)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#216)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-07-08T06:12:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a9695893012247252901167336e277906c548418",
"body": null,
"is_bot": false,
"headline": "min_max_scale=False should be default in .get_results (#215)",
"author_name": "Ori Kronfeld",
"author_login": "ori-kron-wis",
"committed_at": "2025-07-07T12:39:47Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a639cbcb7f85c0a8ae7119a54c7bc6e0a7493f65",
"body": "This reverts commit 343cb8fca0500f38c134aac7e6d5dd40b8781dd1.\n\nCo-authored-by: Ori Kronfeld <ori.kronfeld@weizmann.ac.il>",
"is_bot": false,
"headline": "Revert \"Skip labels before loop (#180)\" (#213)",
"author_name": "Adam Gayoso",
"author_login": "adamgayoso",
"committed_at": "2025-07-07T12:25:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "51ad6873b90e960183848893625bc2793d74d303",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.12.0 → v0.12.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.12.0...v0.12.1)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#214)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-07-01T10:13:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "268cd9d5ae6c75f74677fc78bcbdb2f0ee3bfb24",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.11.13 → v0.12.0](https://github.com/astral-sh/ruff-pre-commit/compare/v0.11.13...v0.12.0)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#211)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-06-26T08:37:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e76555e2ff494f81cdc2652216622e8f83e7befa",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.11.12 → v0.11.13](https://github.com/astral-sh/ruff-pre-commit/compare/v0.11.12...v0.11.13)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#210)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-06-11T09:07:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "12b6f354ac0305c8c81859696ed57f7e3c75927c",
"body": "* Add fast BRAS implementation to scib-metrics package.\n\n* Fix edge cases for naive silhouette implementation, remove comment line and update CHANGELOG.md.\n\n* Apply suggestions from code review\r\n\r\nCorrected function referencing in CHANGELOG and docstrings.\n\nCo-authored-by: Adam Gayoso <adamgayoso@us\n[…]\nleased section.\n\n* Update pyproject.toml\n\n* Update CHANGELOG.md\n\n---------\n\nCo-authored-by: Adam Gayoso <adamgayoso@users.noreply.github.com>\nCo-authored-by: Ori Kronfeld <ori.kronfeld@weizmann.ac.il>",
"is_bot": false,
"headline": "Add fast BRAS implementation to scib-metrics package. (#197)",
"author_name": "prauten",
"author_login": "prauten",
"committed_at": "2025-06-03T11:01:59Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "649362c4154cf134a81a53a4491b7cc951a13911",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.11.11 → v0.11.12](https://github.com/astral-sh/ruff-pre-commit/compare/v0.11.11...v0.11.12)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#209)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-06-03T08:51:37Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5d01bb46f4d2317b4b3379851c7202df5be36c68",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.11.10 → v0.11.11](https://github.com/astral-sh/ruff-pre-commit/compare/v0.11.10...v0.11.11)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#208)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-05-27T06:45:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "86df19892555a5acf827c86bd2321ebb3249db6e",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.11.8 → v0.11.10](https://github.com/astral-sh/ruff-pre-commit/compare/v0.11.8...v0.11.10)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#207)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-05-22T07:48:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "51cbe344f6ccbd61341362fca37148f7d720e021",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.11.7 → v0.11.8](https://github.com/astral-sh/ruff-pre-commit/compare/v0.11.7...v0.11.8)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#206)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-05-08T09:11:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2432e6c7fb0a1a47ccca677292282c038ba5b663",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.11.6 → v0.11.7](https://github.com/astral-sh/ruff-pre-commit/compare/v0.11.6...v0.11.7)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#204)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-04-29T06:33:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a4938c1ae21e09e79d21c180d2fab401bb0dbd85",
"body": "* update to bio_conservation_metrics, batch_correction_metrics deafult values\n\n* added log and test\n\n* typo",
"is_bot": false,
"headline": "fix: update default init values for benchmarker (#203)",
"author_name": "Ori Kronfeld",
"author_login": "ori-kron-wis",
"committed_at": "2025-04-23T06:13:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fc28c2a62276ca00c0ccc02f383187b77219cfe3",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.11.5 → v0.11.6](https://github.com/astral-sh/ruff-pre-commit/compare/v0.11.5...v0.11.6)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#202)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-04-23T05:55:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1e8fab75307b6f954d5583431c1a61ea193601db",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.11.4 → v0.11.5](https://github.com/astral-sh/ruff-pre-commit/compare/v0.11.4...v0.11.5)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#201)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-04-20T07:39:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c82456e8748f0798f8b1d3fac17f6e96cbbd9f59",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.11.2 → v0.11.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.11.2...v0.11.4)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#199)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-04-10T10:20:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "343cb8fca0500f38c134aac7e6d5dd40b8781dd1",
"body": "Co-authored-by: Adam Gayoso <adamgayoso@users.noreply.github.com>",
"is_bot": false,
"headline": "Skip labels before loop (#180)",
"author_name": "John Arevalo",
"author_login": "johnarevalo",
"committed_at": "2025-04-06T20:18:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2bc648d99a917fce319edb129c66c1de100b31a2",
"body": null,
"is_bot": false,
"headline": "Update CHANGELOG.md (#196)",
"author_name": "Ori Kronfeld",
"author_login": "ori-kron-wis",
"committed_at": "2025-03-30T07:13:47Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "44ea38a16b7e08f310e8b4b02181a7e127867bc6",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.11.0 → v0.11.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.11.0...v0.11.2)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#195)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-03-28T13:42:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2471c5011a487b0aa4703945f47b4c17cfe7e1f5",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.9.9 → v0.11.0](https://github.com/astral-sh/ruff-pre-commit/compare/v0.9.9...v0.11.0)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#194)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-03-18T08:21:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "aef5a7686ca429dec0b6eb434410e41a28f8910e",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.9.7 → v0.9.9](https://github.com/astral-sh/ruff-pre-commit/compare/v0.9.7...v0.9.9)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#191)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-03-04T07:44:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "82d67b8e77389088b3c572f82a83de0ea3f436f4",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.9.6 → v0.9.7](https://github.com/astral-sh/ruff-pre-commit/compare/v0.9.6...v0.9.7)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#190)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-02-25T07:40:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e4033d400b2e955a2086dda9b6a3535057c4e4c8",
"body": null,
"is_bot": false,
"headline": "Update pyproject.toml",
"author_name": "Ori Kronfeld",
"author_login": "ori-kron-wis",
"committed_at": "2025-02-17T10:03:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e22f3746c1fae1b1c176480802d392bf667968eb",
"body": null,
"is_bot": false,
"headline": "Update pyproject.toml",
"author_name": "Ori Kronfeld",
"author_login": "ori-kron-wis",
"committed_at": "2025-02-17T09:59:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3b70c9850a46ab60ae9e71924a03e2b0eadf77e5",
"body": null,
"is_bot": false,
"headline": "Update _core.py (#189)",
"author_name": "Ori Kronfeld",
"author_login": "ori-kron-wis",
"committed_at": "2025-02-17T09:52:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d7f3df76b796788a4d7b1a5a64e41dc0fd084bdf",
"body": "* [pre-commit.ci] pre-commit autoupdate\r\n\r\nupdates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.7.3 → v0.9.6](https://github.com/astral-sh/ruff-pre-commit/compare/v0.7.3...v0.9.6)\r\n- [github.com/kynan/nbstripout: 0.8.0 → 0.8.1](https://github.com/kynan/nbstripout/compare/0.8.0...0.8.1)\r\n\r\n* [pre-co\n[…]\nrmation, see https://pre-commit.ci\r\n\r\n---------\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: Ori Kronfeld <ori.kronfeld@weizmann.ac.il>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#185)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-02-12T22:17:21Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "721695c2350187a0ca5c4f0f579da2b4563b2f8b",
"body": "* added option for missing group of metrics and fill in with 0.5\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n* tests fixes\r\n\r\n* tests fixes2\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n* add changlog\r\n\r\n---------\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": false,
"headline": "feat: support scvi-tools scib-metric autotune (#188)",
"author_name": "Ori Kronfeld",
"author_login": "ori-kron-wis",
"committed_at": "2025-02-12T22:12:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8cf4fafe422a7efcb501ca77efd3b47a2fb01d92",
"body": "updates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.7.2 → v0.7.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.7.2...v0.7.3)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#184)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-11-18T07:57:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d5f8a81ebe13d99d1b4ebc5ed5bfcc7a58c4f15f",
"body": "updates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.7.1 → v0.7.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.7.1...v0.7.2)\r\n- [github.com/kynan/nbstripout: 0.7.1 → 0.8.0](https://github.com/kynan/nbstripout/compare/0.7.1...0.8.0)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#183)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-11-10T18:26:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2ffccb4318ba985f2395c005064c225c4197f822",
"body": "* Update _lisi.py\r\n\r\n* Update _lisi.py\r\n\r\n* Update CHANGELOG.md\r\n\r\n* Update CHANGELOG.md",
"is_bot": false,
"headline": "Fix Lisi return type and docstring (#182)",
"author_name": "Adam Gayoso",
"author_login": "adamgayoso",
"committed_at": "2024-11-04T08:46:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e31aa1cc7f8c6e8e3332369519aed7dfd6b1f15b",
"body": "… work with bio/batch separately. (#181)\n\n\r\n---------\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": false,
"headline": "Change behavior of None default metrics and allow results/plotting to…",
"author_name": "Adam Gayoso",
"author_login": "adamgayoso",
"committed_at": "2024-11-04T08:01:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a2575daea1d0491d80090edef5b2fa21371ee01f",
"body": "updates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.6.2 → v0.7.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.6.2...v0.7.1)\r\n- [github.com/pre-commit/pre-commit-hooks: v4.6.0 → v5.0.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.6.0...v5.0.0)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#178)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-10-30T08:51:32Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "876e8fd1f581e466482f33980769de0d779f039f",
"body": "* Add more ruff rules\r\n\r\n* remove bandit\r\n\r\n* Add FA\r\n\r\n* fixes\r\n\r\n* Remove D400",
"is_bot": false,
"headline": "Add more ruff rules (#177)",
"author_name": "Adam Gayoso",
"author_login": "adamgayoso",
"committed_at": "2024-09-01T16:12:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f41e4325c7750857fe201384a4c5128adc6a8875",
"body": "updates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.6.1 → v0.6.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.6.1...v0.6.2)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#176)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-08-29T07:02:29Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ec7c55b20ac823615906c544eadf81bd65314e2c",
"body": "* Update _core.py\r\n\r\n* Update _lisi.py\r\n\r\n* Update sampling.py\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n---------\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": false,
"headline": "Typing fixes (#174)",
"author_name": "Adam Gayoso",
"author_login": "adamgayoso",
"committed_at": "2024-08-22T08:12:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6a2924f30dfc53146944cbece5fea264b25ae734",
"body": "* Update template to v0.4.0\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n* Delete README.md.rej\r\n\r\n* Delete docs/conf.py.rej\r\n\r\n* Update README.md\r\n\r\n* Update pyproject.toml\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\n[…]\n----\r\n\r\nCo-authored-by: scverse-bot <None>\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: Adam Gayoso <adamgayoso@users.noreply.github.com>",
"is_bot": false,
"headline": "Update template to v0.4.0 (#165)",
"author_name": "scverse-bot",
"author_login": "scverse-bot",
"committed_at": "2024-08-22T08:03:01Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "081dff0dde6fa8e80ff06f5dc39a1bcae3f4b63a",
"body": "* Add seed to leiden clustering\r\n\r\n* Update _nmi_ari.py\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n* Update test_metrics.py\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.c\n[…]\nit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n---------\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": false,
"headline": "Add seed to leiden clustering (#173)",
"author_name": "Adam Gayoso",
"author_login": "adamgayoso",
"committed_at": "2024-08-22T07:29:15Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "c19679cc885287584f86e3b821266e0ec8b35d0a",
"body": "updates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.5.1 → v0.6.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.5.1...v0.6.1)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: Adam Gayoso <adamgayoso@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#169)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-08-22T06:38:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "96cb2c07c00114e88ab316c1f10988c53f68d508",
"body": "* Fix warnings\r\n\r\n* Update _nmi_ari.py\r\n\r\n* Update _kbet.py\r\n\r\n* Update CHANGELOG.md",
"is_bot": false,
"headline": "Fix warnings (#171)",
"author_name": "Adam Gayoso",
"author_login": "adamgayoso",
"committed_at": "2024-08-21T21:08:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a04c58f2ca2b1bfd544a503f8987000a739d8612",
"body": "* Fix kmeans test instability\r\n\r\n* Update test_neighbors.py\r\n\r\n* Update test_metrics.py\r\n\r\n* Update CHANGELOG.md",
"is_bot": false,
"headline": "Fix kmeans test instability (#172)",
"author_name": "Adam Gayoso",
"author_login": "adamgayoso",
"committed_at": "2024-08-21T20:57:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7482c062883303c05ebe34f11180f08fafb69ff1",
"body": "* Use new scanpy umap connectivity fn in test\r\n\r\n* Update test_neighbors.py\r\n\r\n* Update CHANGELOG.md",
"is_bot": false,
"headline": "Use new scanpy umap connectivity fn in test (#170)",
"author_name": "Adam Gayoso",
"author_login": "adamgayoso",
"committed_at": "2024-08-21T20:22:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0071da9d2216487727286916aa275b2c6ca844cb",
"body": "updates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.4.10 → v0.5.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.4.10...v0.5.1)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#168)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-07-09T19:07:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "88d0c7a8c1d50dad805b297053f3bf2c203bf83a",
"body": "updates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.4.9 → v0.4.10](https://github.com/astral-sh/ruff-pre-commit/compare/v0.4.9...v0.4.10)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#167)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-06-25T16:38:14Z",
"body_truncated": false,
"is_coding_agent": false
}
],
"releases_count": 29,
"commits_last_year": 54,
"latest_release_at": "2026-07-13T07:05:47Z",
"latest_release_tag": "v0.5.10",
"releases_from_tags": false,
"days_since_last_push": 0,
"active_weeks_last_year": 38,
"days_since_latest_release": 8,
"mean_days_between_releases": 96.7
},
"community": {
"has_readme": true,
"has_license": true,
"has_description": true,
"has_contributing": true,
"health_percentage": 50,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"ecosystem": {
"packages": [
{
"name": "scib-metrics",
"exists": true,
"license": null,
"keywords": [],
"ecosystem": "pypi",
"matches_repo": true,
"registry_url": "https://pypi.org/project/scib-metrics/",
"is_deprecated": false,
"latest_version": "0.5.10",
"repository_url": "https://github.com/yoseflab/scib-metrics",
"versions_count": 28,
"total_downloads": null,
"dependents_count": null,
"deprecation_note": null,
"maintainers_count": null,
"monthly_downloads": null,
"first_published_at": "2022-10-03T19:00:49.142781Z",
"latest_published_at": "2026-07-13T07:06:14.558760Z",
"latest_version_yanked": null,
"days_since_latest_publish": 8
}
]
},
"popularity": {
"forks": 22,
"stars": 96,
"watchers": 6,
"fork_history": {
"days": [
{
"date": "2023-04-14",
"count": 1
},
{
"date": "2023-05-02",
"count": 1
},
{
"date": "2023-06-06",
"count": 1
},
{
"date": "2023-08-23",
"count": 1
},
{
"date": "2023-09-14",
"count": 1
},
{
"date": "2023-09-19",
"count": 1
},
{
"date": "2024-02-22",
"count": 1
},
{
"date": "2024-03-08",
"count": 1
},
{
"date": "2024-04-10",
"count": 1
},
{
"date": "2024-09-03",
"count": 1
},
{
"date": "2024-09-06",
"count": 1
},
{
"date": "2024-12-04",
"count": 1
},
{
"date": "2025-02-04",
"count": 1
},
{
"date": "2025-03-31",
"count": 1
},
{
"date": "2025-04-14",
"count": 1
},
{
"date": "2025-04-21",
"count": 1
},
{
"date": "2025-08-15",
"count": 1
},
{
"date": "2025-10-06",
"count": 1
},
{
"date": "2025-11-04",
"count": 1
},
{
"date": "2025-12-16",
"count": 1
},
{
"date": "2026-04-07",
"count": 1
},
{
"date": "2026-05-16",
"count": 1
}
],
"complete": true,
"collected": 22,
"total_forks": 22
},
"star_history": {
"days": [
{
"date": "2022-10-25",
"count": 1
},
{
"date": "2022-10-26",
"count": 1
},
{
"date": "2022-11-02",
"count": 1
},
{
"date": "2022-11-03",
"count": 1
},
{
"date": "2022-11-14",
"count": 1
},
{
"date": "2023-02-03",
"count": 1
},
{
"date": "2023-02-10",
"count": 1
},
{
"date": "2023-03-08",
"count": 1
},
{
"date": "2023-03-14",
"count": 1
},
{
"date": "2023-04-05",
"count": 1
},
{
"date": "2023-04-26",
"count": 1
},
{
"date": "2023-05-25",
"count": 1
},
{
"date": "2023-06-20",
"count": 1
},
{
"date": "2023-08-02",
"count": 2
},
{
"date": "2023-08-03",
"count": 1
},
{
"date": "2023-08-07",
"count": 1
},
{
"date": "2023-09-19",
"count": 1
},
{
"date": "2023-09-21",
"count": 1
},
{
"date": "2023-09-24",
"count": 1
},
{
"date": "2023-09-25",
"count": 2
},
{
"date": "2023-10-17",
"count": 2
},
{
"date": "2023-12-11",
"count": 1
},
{
"date": "2023-12-12",
"count": 1
},
{
"date": "2023-12-13",
"count": 1
},
{
"date": "2024-01-03",
"count": 1
},
{
"date": "2024-01-04",
"count": 1
},
{
"date": "2024-02-12",
"count": 1
},
{
"date": "2024-02-22",
"count": 2
},
{
"date": "2024-02-27",
"count": 2
},
{
"date": "2024-03-13",
"count": 2
},
{
"date": "2024-03-30",
"count": 1
},
{
"date": "2024-04-10",
"count": 1
},
{
"date": "2024-04-17",
"count": 1
},
{
"date": "2024-05-26",
"count": 1
},
{
"date": "2024-07-11",
"count": 1
},
{
"date": "2024-07-25",
"count": 1
},
{
"date": "2024-08-07",
"count": 1
},
{
"date": "2024-08-17",
"count": 1
},
{
"date": "2024-09-04",
"count": 1
},
{
"date": "2024-10-04",
"count": 1
},
{
"date": "2024-10-17",
"count": 1
},
{
"date": "2024-11-02",
"count": 1
},
{
"date": "2024-11-09",
"count": 1
},
{
"date": "2024-12-04",
"count": 1
},
{
"date": "2024-12-11",
"count": 1
},
{
"date": "2024-12-25",
"count": 1
},
{
"date": "2025-01-07",
"count": 1
},
{
"date": "2025-02-04",
"count": 1
},
{
"date": "2025-03-26",
"count": 1
},
{
"date": "2025-03-27",
"count": 1
},
{
"date": "2025-04-21",
"count": 1
},
{
"date": "2025-04-24",
"count": 1
},
{
"date": "2025-05-27",
"count": 1
},
{
"date": "2025-06-16",
"count": 1
},
{
"date": "2025-07-01",
"count": 2
},
{
"date": "2025-07-30",
"count": 1
},
{
"date": "2025-08-06",
"count": 1
},
{
"date": "2025-08-07",
"count": 1
},
{
"date": "2025-08-11",
"count": 1
},
{
"date": "2025-08-12",
"count": 1
},
{
"date": "2025-08-19",
"count": 1
},
{
"date": "2025-08-24",
"count": 1
},
{
"date": "2025-09-03",
"count": 1
},
{
"date": "2025-09-07",
"count": 1
},
{
"date": "2025-09-10",
"count": 1
},
{
"date": "2025-10-20",
"count": 1
},
{
"date": "2025-10-22",
"count": 1
},
{
"date": "2025-10-29",
"count": 1
},
{
"date": "2025-11-03",
"count": 1
},
{
"date": "2025-11-14",
"count": 1
},
{
"date": "2025-11-22",
"count": 1
},
{
"date": "2025-11-25",
"count": 1
},
{
"date": "2026-01-06",
"count": 1
},
{
"date": "2026-01-13",
"count": 1
},
{
"date": "2026-01-18",
"count": 1
},
{
"date": "2026-01-21",
"count": 1
},
{
"date": "2026-01-27",
"count": 1
},
{
"date": "2026-01-30",
"count": 1
},
{
"date": "2026-02-11",
"count": 1
},
{
"date": "2026-02-27",
"count": 1
},
{
"date": "2026-03-05",
"count": 1
},
{
"date": "2026-03-15",
"count": 1
},
{
"date": "2026-04-03",
"count": 1
},
{
"date": "2026-04-15",
"count": 1
},
{
"date": "2026-05-16",
"count": 1
},
{
"date": "2026-06-18",
"count": 1
},
{
"date": "2026-07-08",
"count": 1
},
{
"date": "2026-07-09",
"count": 1
},
{
"date": "2026-07-21",
"count": 1
}
],
"complete": true,
"collected": 96,
"total_stars": 96
},
"open_issues_and_prs": 12
},
"ai_readiness": {
"has_nix": false,
"example_dirs": [
"notebooks"
],
"has_llms_txt": false,
"has_dockerfile": false,
"has_mcp_signal": false,
"bootstrap_files": [
"docs/Makefile"
],
"api_schema_files": [],
"has_devcontainer": false,
"typecheck_configs": [],
"toolchain_manifests": [],
"largest_source_bytes": 16779,
"source_files_sampled": 40,
"oversized_source_files": 0,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"dependencies": {
"manifests": [
"pyproject.toml",
"setup.py"
],
"advisories": {
"error": "No resolved dependencies carried a version and a supported ecosystem",
"scope": "repository_graph",
"source": null,
"findings": [],
"collected": false,
"malicious": [],
"truncated": false,
"by_severity": {},
"advisory_count": 0,
"affected_count": 0,
"assessed_count": 0,
"malicious_count": 0,
"assessed_package": null,
"unassessed_count": 11,
"direct_affected_count": 0
},
"ecosystems": [
"pypi"
],
"dependencies": [
{
"name": "anndata",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "chex",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "jax",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "jaxlib",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "numpy",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "pandas",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "scipy",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "scikit-learn",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "scanpy",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">=1.9"
},
{
"name": "rich",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "pynndescent",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "igraph",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">0.9.0"
},
{
"name": "matplotlib",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "plottable",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "tqdm",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "umap-learn",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">=0.5.0"
}
],
"all_dependencies": {
"error": null,
"source": "github-sbom",
"packages": [
{
"name": "igraph",
"direct": true,
"version": null,
"ecosystem": "pypi"
},
{
"name": "scanpy",
"direct": true,
"version": null,
"ecosystem": "pypi"
},
{
"name": "umap-learn",
"direct": true,
"version": null,
"ecosystem": "pypi"
},
{
"name": "numba",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "pybtex-docutils",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "scanpydoc",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "scib",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "sphinx",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "sphinx-book-theme",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "sphinxcontrib-bibtex",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "twine",
"direct": false,
"version": null,
"ecosystem": "pypi"
}
],
"collected": true,
"truncated": false,
"total_count": 11,
"direct_count": 3,
"indirect_count": 8
}
},
"maintainership": {
"issues": {
"open_prs": 5,
"merged_prs": 203,
"open_issues": 7,
"closed_ratio": 0.873,
"closed_issues": 48,
"closed_unmerged_prs": 16
},
"bus_factor": 1,
"bot_contributors": 2,
"top_contributors": [
{
"type": "User",
"login": "adamgayoso",
"commits": 95,
"avatar_url": "https://avatars.githubusercontent.com/u/10859440?v=4"
},
{
"type": "User",
"login": "martinkim0",
"commits": 20,
"avatar_url": "https://avatars.githubusercontent.com/u/46072231?v=4"
},
{
"type": "User",
"login": "ori-kron-wis",
"commits": 18,
"avatar_url": "https://avatars.githubusercontent.com/u/175299014?v=4"
},
{
"type": "User",
"login": "scverse-bot",
"commits": 2,
"avatar_url": "https://avatars.githubusercontent.com/u/108668866?v=4"
},
{
"type": "User",
"login": "grst",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/7051479?v=4"
},
{
"type": "User",
"login": "johnarevalo",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/1301626?v=4"
},
{
"type": "User",
"login": "justjhong",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/14086852?v=4"
},
{
"type": "User",
"login": "Zethson",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/21954664?v=4"
},
{
"type": "User",
"login": "prauten",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/38099261?v=4"
}
],
"contributors_sampled": 9,
"top_contributor_share": 0.679
},
"quality_signals": {
"has_ci": true,
"has_tests": true,
"ci_workflows": [
"build.yaml",
"release.yaml",
"test_linux.yaml",
"test_linux_cuda.yaml",
"test_linux_pre.yaml",
"test_macos.yaml",
"test_macos_m1.yaml",
"test_windows.yaml"
],
"has_docs_dir": true,
"linter_configs": [],
"has_editorconfig": true,
"has_linter_config": true,
"has_precommit_config": true
},
"security_signals": {
"lockfiles": [],
"scorecard": {
"checks": [
{
"name": "Binary-Artifacts",
"score": 10,
"reason": "no binaries found in the repo",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
},
{
"name": "Branch-Protection",
"score": 5,
"reason": "branch protection is not maximal on development and all release branches",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
},
{
"name": "CI-Tests",
"score": 10,
"reason": "24 out of 24 merged PRs checked by a CI test -- score normalized to 10",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
},
{
"name": "CII-Best-Practices",
"score": 0,
"reason": "no effort to earn an OpenSSF best practices badge detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
},
{
"name": "Code-Review",
"score": 0,
"reason": "Found 0/9 approved changesets -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
},
{
"name": "Contributors",
"score": 10,
"reason": "project has 5 contributing companies or organizations",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
},
{
"name": "Dangerous-Workflow",
"score": 10,
"reason": "no dangerous workflow patterns detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
},
{
"name": "Dependency-Update-Tool",
"score": 0,
"reason": "no update tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
},
{
"name": "Fuzzing",
"score": 0,
"reason": "project is not fuzzed",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
},
{
"name": "License",
"score": 10,
"reason": "license file detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
},
{
"name": "Maintained",
"score": 10,
"reason": "15 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
},
{
"name": "Packaging",
"score": 10,
"reason": "packaging workflow detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
},
{
"name": "Pinned-Dependencies",
"score": 0,
"reason": "dependency not pinned by hash detected -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
},
{
"name": "SAST",
"score": 0,
"reason": "SAST tool is not run on all commits -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
},
{
"name": "Security-Policy",
"score": 0,
"reason": "security policy file not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
},
{
"name": "Signed-Releases",
"score": null,
"reason": "no releases found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
},
{
"name": "Token-Permissions",
"score": 0,
"reason": "detected GitHub workflow tokens with excessive permissions",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
},
{
"name": "Vulnerabilities",
"score": 10,
"reason": "0 existing vulnerabilities detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
}
],
"commit": "ad2afce6acfc09318f92c516e011e86b851413c3",
"ran_at": "2026-07-22T04:32:10Z",
"aggregate_score": 5,
"scorecard_version": "v5.5.0"
},
"has_codeql_workflow": false,
"has_security_policy": false,
"has_dependabot_config": false
},
"contribution_flow": {
"collected": true,
"ci_last_run_at": "2026-07-21T10:44:54Z",
"oldest_open_prs": [
{
"number": 83,
"created_at": "2023-02-16T17:58:42Z",
"last_comment_at": "2023-02-16T18:03:50Z",
"last_comment_author": "codecov"
},
{
"number": 259,
"created_at": "2026-03-10T16:23:03Z",
"last_comment_at": "2026-03-10T16:47:06Z",
"last_comment_author": "codecov"
},
{
"number": 267,
"created_at": "2026-05-16T21:36:30Z",
"last_comment_at": "2026-05-19T10:30:36Z",
"last_comment_author": "ori-kron-wis"
},
{
"number": 273,
"created_at": "2026-06-18T11:58:51Z",
"last_comment_at": "2026-06-23T08:24:02Z",
"last_comment_author": "codecov"
},
{
"number": 278,
"created_at": "2026-07-17T07:12:04Z",
"last_comment_at": null,
"last_comment_author": null
}
],
"last_merged_pr_at": "2026-07-21T06:42:32Z",
"ci_last_conclusion": null,
"oldest_open_issues": [
{
"number": 12,
"created_at": "2022-10-03T18:34:40Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 32,
"created_at": "2022-10-14T00:58:21Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 51,
"created_at": "2022-11-13T20:43:05Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 58,
"created_at": "2022-11-29T22:18:31Z",
"last_comment_at": "2025-10-08T09:32:27Z",
"last_comment_author": "jkobject"
},
{
"number": 62,
"created_at": "2022-12-09T20:09:00Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 100,
"created_at": "2023-08-10T13:42:43Z",
"last_comment_at": "2023-12-28T17:17:32Z",
"last_comment_author": "adamgayoso"
},
{
"number": 144,
"created_at": "2024-02-23T21:33:38Z",
"last_comment_at": null,
"last_comment_author": null
}
]
}
},
"config": {
"disabled_metrics": [],
"disabled_categories": [],
"disabled_components": {}
},
"source": {
"url": "https://github.com/YosefLab/scib-metrics",
"host": "github.com",
"name": "scib-metrics",
"owner": "YosefLab"
},
"metrics": {
"overall": {
"key": "overall",
"band": "good",
"name": "Overall health",
"note": null,
"notes": [],
"value": 73,
"inputs": {
"security": 50,
"vitality": 90,
"community": 58,
"governance": 68,
"engineering": 92
},
"components": []
},
"categories": [
{
"key": "vitality",
"band": "excellent",
"name": "Vitality",
"value": 90,
"weight": 0.22,
"metrics": [
{
"key": "development_activity",
"band": "excellent",
"name": "Development activity",
"note": null,
"notes": [],
"value": 88,
"inputs": {
"commits_last_year": 54,
"human_commit_share": 0.31,
"days_since_last_push": 0,
"active_weeks_last_year": 38
},
"components": [
{
"key": "push_recency",
"name": "Push recency",
"detail": "last push 0 days ago",
"points": 36,
"status": "met",
"details": [
{
"code": "push_recency",
"params": {
"days": 0
}
}
],
"max_points": 36
},
{
"key": "commit_cadence",
"name": "Commit cadence",
"detail": "38/52 weeks with commits",
"points": 26.3,
"status": "partial",
"details": [
{
"code": "commit_cadence_weeks",
"params": {
"weeks": 38
}
}
],
"max_points": 36
},
{
"key": "commit_volume",
"name": "Commit volume",
"detail": "54 commits in the last year",
"points": 15.6,
"status": "partial",
"details": [
{
"code": "commits_last_year",
"params": {
"count": 54
}
}
],
"max_points": 18
},
{
"key": "openssf_scorecard_maintained",
"name": "OpenSSF Scorecard: Maintained",
"detail": "15 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "release_discipline",
"band": "excellent",
"name": "Release discipline",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 92,
"inputs": {
"releases_count": 29,
"latest_release_tag": "v0.5.10",
"releases_from_tags": false,
"days_since_latest_release": 8,
"mean_days_between_releases": 96.7
},
"components": [
{
"key": "ships_releases",
"name": "Ships releases",
"detail": "29 releases published",
"points": 27,
"status": "met",
"details": [
{
"code": "releases_published",
"params": {
"count": 29
}
}
],
"max_points": 27
},
{
"key": "release_recency",
"name": "Release recency",
"detail": "latest release 8 days ago",
"points": 36,
"status": "met",
"details": [
{
"code": "release_recency",
"params": {
"days": 8
}
}
],
"max_points": 36
},
{
"key": "release_cadence",
"name": "Release cadence",
"detail": "a release every ~96.7 days",
"points": 19.8,
"status": "partial",
"details": [
{
"code": "release_cadence",
"params": {
"gap": 96.7
}
}
],
"max_points": 27
},
{
"key": "openssf_scorecard_signed_releases",
"name": "OpenSSF Scorecard: Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
}
]
},
{
"key": "abandonment",
"band": "excellent",
"name": "Abandonment",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"cap": null,
"state": "maintained",
"guards": [],
"signals": [],
"red_flag": false,
"multiplier_pct": 100,
"declared_reason": null,
"unverified_reason": null,
"unanswered_open_prs": null,
"unanswered_open_issues": null,
"days_since_last_merged_pr": null,
"days_since_last_human_commit": 8,
"days_since_last_human_commit_is_floor": false
},
"components": [
{
"key": "project_is_still_maintained",
"name": "Project is still maintained",
"detail": "last human commit 8 days ago",
"points": 100,
"status": "met",
"details": [
{
"code": "abandonment_maintained",
"params": {
"days": 8
}
}
],
"max_points": 100
}
]
}
],
"description": "Is the project alive — is code being written and are releases shipping?"
},
{
"key": "community",
"band": "moderate",
"name": "Community & Adoption",
"value": 58,
"weight": 0.18,
"metrics": [
{
"key": "popularity",
"band": "at_risk",
"name": "Popularity & adoption",
"note": null,
"notes": [],
"value": 47,
"inputs": {
"forks": 22,
"stars": 96,
"watchers": 6,
"growth_state": "unverified",
"growth_factor_pct": 100,
"growth_unverified_reason": "below_threshold"
},
"components": [
{
"key": "stars",
"name": "Stars",
"detail": "96 stars",
"points": 32.1,
"status": "partial",
"details": [
{
"code": "stars",
"params": {
"count": 96
}
}
],
"max_points": 60
},
{
"key": "forks",
"name": "Forks",
"detail": "22 forks",
"points": 11,
"status": "partial",
"details": [
{
"code": "forks",
"params": {
"count": 22
}
}
],
"max_points": 25
},
{
"key": "watchers",
"name": "Watchers",
"detail": "6 watchers",
"points": 3.9,
"status": "partial",
"details": [
{
"code": "watchers",
"params": {
"count": 6
}
}
],
"max_points": 15
}
]
},
{
"key": "community_health",
"band": "good",
"name": "Community health",
"note": null,
"notes": [],
"value": 70,
"inputs": {
"has_readme": true,
"has_license": true,
"has_contributing": true,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 22.5,
"status": "met",
"details": [],
"max_points": 22.5
},
{
"key": "license",
"name": "License",
"detail": "recognized license (BSD-3-Clause)",
"points": 22.5,
"status": "met",
"details": [
{
"code": "license_standard",
"params": {}
},
{
"code": "license_spdx",
"params": {
"spdx": "BSD-3-Clause"
}
}
],
"max_points": 22.5
},
{
"key": "contributing_guide",
"name": "CONTRIBUTING guide",
"detail": null,
"points": 18,
"status": "met",
"details": [],
"max_points": 18
},
{
"key": "code_of_conduct",
"name": "Code of conduct",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 13.5
},
{
"key": "issue_template",
"name": "Issue template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.2
},
{
"key": "pr_template",
"name": "PR template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.3
}
]
}
],
"description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
},
{
"key": "governance",
"band": "moderate",
"name": "Sustainability & Governance",
"value": 68,
"weight": 0.24,
"metrics": [
{
"key": "maintainer_resilience",
"band": "at_risk",
"name": "Maintainer resilience (bus factor)",
"note": null,
"notes": [],
"value": 38,
"inputs": {
"bus_factor": 1,
"contributors_sampled": 9,
"top_contributor_share": 0.679
},
"components": [
{
"key": "bus_factor",
"name": "Bus factor",
"detail": "1 contributor(s) cover half of all commits",
"points": 9,
"status": "partial",
"details": [
{
"code": "bus_factor",
"params": {
"count": 1
}
}
],
"max_points": 54
},
{
"key": "commit_distribution",
"name": "Commit distribution",
"detail": "top contributor authored 68% of commits",
"points": 7.2,
"status": "partial",
"details": [
{
"code": "top_contributor_share",
"params": {
"share": 68
}
}
],
"max_points": 22.5
},
{
"key": "contributor_breadth",
"name": "Contributor breadth",
"detail": "9 contributors",
"points": 12.2,
"status": "partial",
"details": [
{
"code": "contributors_sampled",
"params": {
"count": 9
}
}
],
"max_points": 13.5
},
{
"key": "openssf_scorecard_contributors",
"name": "OpenSSF Scorecard: Contributors",
"detail": "project has 5 contributing companies or organizations",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "good",
"name": "Issue & PR responsiveness",
"note": null,
"notes": [],
"value": 76,
"inputs": {
"merged_prs": 203,
"open_issues": 7,
"closed_issues": 48,
"issue_closed_ratio": 0.873,
"closed_unmerged_prs": 16
},
"components": [
{
"key": "issue_resolution",
"name": "Issue resolution",
"detail": "87% of issues closed",
"points": 40.8,
"status": "partial",
"details": [
{
"code": "issues_closed_share",
"params": {
"share": 87
}
}
],
"max_points": 46.75
},
{
"key": "pr_acceptance",
"name": "PR acceptance",
"detail": "203/219 decided PRs merged",
"points": 35.5,
"status": "partial",
"details": [
{
"code": "decided_prs_merged",
"params": {
"merged": 203,
"decided": 219
}
}
],
"max_points": 38.25
},
{
"key": "openssf_scorecard_code_review",
"name": "OpenSSF Scorecard: Code-Review",
"detail": "Found 0/9 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
}
]
},
{
"key": "stewardship",
"band": "good",
"name": "Ownership & stewardship",
"note": null,
"notes": [],
"value": 70,
"inputs": {
"followers": 138,
"owner_type": "Organization",
"is_verified": null,
"owner_login": "YosefLab",
"public_repos": 73,
"account_age_days": 3991
},
"components": [
{
"key": "ownership_backing",
"name": "Ownership backing",
"detail": "organization-owned",
"points": 30,
"status": "met",
"details": [
{
"code": "owner_organization",
"params": {}
}
],
"max_points": 30
},
{
"key": "verified_domain",
"name": "Verified domain",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "owner_reach",
"name": "Owner reach",
"detail": "138 followers of YosefLab",
"points": 15.4,
"status": "partial",
"details": [
{
"code": "owner_followers",
"params": {
"count": 138,
"login": "YosefLab"
}
}
],
"max_points": 25
},
{
"key": "track_record",
"name": "Track record",
"detail": "73 public repos, account ~10 yr old",
"points": 25,
"status": "met",
"details": [
{
"code": "public_repos",
"params": {
"count": 73
}
},
{
"code": "account_age_years",
"params": {
"years": 10
}
}
],
"max_points": 25
}
]
},
{
"key": "package_maintenance",
"band": "excellent",
"name": "Package maintenance",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"packages": [
"scib-metrics"
],
"ecosystems": "pypi",
"any_deprecated": false,
"min_days_since_publish": 8
},
"components": [
{
"key": "published_resolvable",
"name": "Published & resolvable",
"detail": "1 package(s) on pypi",
"points": 25,
"status": "met",
"details": [
{
"code": "packages_published",
"params": {
"count": 1,
"ecosystems": "pypi"
}
}
],
"max_points": 25
},
{
"key": "publish_recency",
"name": "Publish recency",
"detail": "latest publish 8 days ago",
"points": 35,
"status": "met",
"details": [
{
"code": "publish_recency",
"params": {
"days": 8
}
}
],
"max_points": 35
},
{
"key": "version_history",
"name": "Version history",
"detail": "28 published versions",
"points": 20,
"status": "met",
"details": [
{
"code": "published_versions",
"params": {
"count": 28
}
}
],
"max_points": 20
},
{
"key": "not_deprecated",
"name": "Not deprecated",
"detail": "active, not deprecated or yanked",
"points": 20,
"status": "met",
"details": [
{
"code": "package_not_deprecated",
"params": {}
}
],
"max_points": 20
}
]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "excellent",
"name": "Engineering Quality",
"value": 92,
"weight": 0.2,
"metrics": [
{
"key": "engineering_practices",
"band": "excellent",
"name": "Engineering practices",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"has_ci": true,
"has_tests": true,
"has_editorconfig": true,
"has_linter_config": true,
"has_precommit_config": true
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": "8 workflow(s)",
"points": 24,
"status": "met",
"details": [
{
"code": "ci_workflows",
"params": {
"count": 8
}
}
],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 24,
"status": "met",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": null,
"points": 16,
"status": "met",
"details": [],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 9.6,
"status": "met",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 6.4,
"status": "met",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "24 out of 24 merged PRs checked by a CI test -- score normalized to 10",
"points": 20,
"status": "met",
"details": [],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "good",
"name": "Documentation",
"note": null,
"notes": [],
"value": 80,
"inputs": {
"topics": [],
"has_wiki": false,
"homepage": "https://scib-metrics.readthedocs.io/",
"has_readme": true,
"has_docs_dir": true,
"has_description": true
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 30,
"status": "met",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 25,
"status": "met",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": "https://scib-metrics.readthedocs.io/",
"points": 15,
"status": "met",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
},
{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "moderate",
"name": "Security",
"value": 50,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "moderate",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 50,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 17,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 1,
"scorecard_aggregate": 5
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "branch protection is not maximal on development and all release branches",
"points": 3.8,
"status": "partial",
"details": [],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "24 out of 24 merged PRs checked by a CI test -- score normalized to 10",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 0/9 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 5 contributing companies or organizations",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no dangerous workflow patterns detected",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "no update tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "15 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow detected",
"points": 5,
"status": "met",
"details": [],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "SAST tool is not run on all commits -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "detected GitHub workflow tokens with excessive permissions",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "0 existing vulnerabilities detected",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "excellent",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"review_only_matches": 0,
"assessed_self_published_locations": 15
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "at_risk",
"name": "AI Readiness",
"value": 47,
"weight": 0,
"metrics": [
{
"key": "ai_agent_context",
"band": "at_risk",
"name": "Agent context & guidance",
"note": null,
"notes": [],
"value": 40,
"inputs": {
"has_llms_txt": false,
"legible_history_share": 0.742,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "legible_commit_history",
"name": "Legible commit history",
"detail": "23 of 31 human commits state their intent (structured subject or explanatory body)",
"points": 39.6,
"status": "partial",
"details": [
{
"code": "legible_history",
"params": {
"legible": 23,
"sampled": 31
}
}
],
"max_points": 40
}
]
},
{
"key": "ai_verify_loop",
"band": "moderate",
"name": "Verify loop (build / test / typecheck)",
"note": null,
"notes": [],
"value": 51,
"inputs": {
"has_nix": false,
"has_tests": true,
"lockfiles": [],
"has_dockerfile": false,
"typed_language": false,
"bootstrap_files": [
"docs/Makefile"
],
"has_devcontainer": false,
"has_linter_config": true,
"typecheck_configs": [],
"agent_commit_share": 0,
"toolchain_manifests": [],
"dependency_bot_commit_share": 0
},
"components": [
{
"key": "one_command_bootstrap",
"name": "One-command bootstrap",
"detail": "docs/Makefile",
"points": 18,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "docs/Makefile"
}
}
],
"max_points": 18
},
{
"key": "automated_tests",
"name": "Automated tests",
"detail": null,
"points": 22,
"status": "met",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": null,
"points": 11,
"status": "met",
"details": [],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "no agent-authored commits among the last 100",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_authored_commits",
"params": {
"sampled": 100
}
}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "no automated dependency updates observed",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_dependency_automation",
"params": {}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "moderate",
"name": "Code legibility for models",
"note": null,
"notes": [],
"value": 55,
"inputs": {
"primary_language": "Python",
"largest_source_bytes": 16779,
"source_files_sampled": 40,
"oversized_source_files": 0
},
"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "Python without a type-check config",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_typecheck_config_language",
"params": {
"language": "Python"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "0/40 source files over 60KB",
"points": 55,
"status": "met",
"details": [
{
"code": "oversized_source_files",
"params": {
"kb": 60,
"sampled": 40,
"oversized": 0
}
}
],
"max_points": 55
}
]
},
{
"key": "ai_interfaces",
"band": "at_risk",
"name": "Machine-readable interfaces",
"note": null,
"notes": [],
"value": 40,
"inputs": {
"example_dirs": [
"notebooks"
],
"has_mcp_signal": false,
"api_schema_files": []
},
"components": [
{
"key": "api_schema_openapi_graphql_proto",
"name": "API schema (OpenAPI/GraphQL/proto)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 40
},
{
"key": "mcp_server",
"name": "MCP server",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "runnable_examples",
"name": "Runnable examples",
"detail": "notebooks",
"points": 40,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "notebooks"
}
}
],
"max_points": 40
}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.13.0"
},
"warnings": [
"deps.dev does not index pypi:scib-metrics@0.5.10; advisories assessed against the repository dependency graph instead",
"No resolved dependencies carried a version and a supported ecosystem"
],
"report_type": "repository",
"generated_at": "2026-07-22T04:32:28.724905Z",
"schema_version": "0.26.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/y/YosefLab/scib-metrics.svg",
"full_name": "YosefLab/scib-metrics",
"license_state": "standard",
"license_spdx": "BSD-3-Clause"
}