公开记录
软件健康报告模式 0.26.0 · 指标 1.13.0 · 2026-07-22 15:26 UTC

evolbioinfo / gotree

Gotree: a set of command line tools and an API to manipulate phylogenetic trees.

Go · ShellGPL-2.0★ 150 星标⑂ 19 复刻始于 2016年7月在 GitHub 上查看 ↗

evolbioinfo/gotree 的健康指数为 100 分中的 61 分,处于「中等」区间。 其得分最高的类别是Engineering Quality(81/100),最低的是Security(37/100)。 最近一次更新在 7 天前。 近期的大部分工作由 1 位贡献者完成。

61
总分 / 100
中等

软件健康指数

指标归入加权类别,统一采用 1–100 量表。总体分先取类别加权平均;当公开证据触发高风险司法辖区政策时,评级会按政策调整,并设置 49(有风险)的上限。AI 就绪度不计入总体分。

61
优秀85-100堪称典范;基本满足所有检验标准
良好70-84健康;仅有轻微不足
中等50-69可接受,但存在明显不足;建议进行审查
存在风险30-49存在重大薄弱环节;采用时应保持审慎
危急1-29问题严重(项目被弃置、仅有单一维护者、缺乏基本工程规范)
活力社区与采用可持续性与治理工程质量安全AI 就绪度

评分画像

每条轴代表一个类别。形状比平均值更重要——健康的对象会填满整个图形,而“一峰一谷”式画像意味着某一维度的优势正掩盖另一维度的风险。

所有权

50 关注者30 个公开仓库始于 2017年2月

该仓库由组织支持——共同承担、可问责的托管责任,可延续于任何单一维护者之后。

软件包生态系统

注册表软件包版本月下载量版本数最近发布
Gogithub.com/evolbioinfo/gotreev0.5.2-4022 天前

按类别列示的指标

活力

项目是否仍有生命——是否仍在编写代码,是否仍在发布版本?

68中等 · 占总体的 22%
评分方式
36/36推送新近度 — 最近一次推送于 7 天前
6.9/36提交节奏 — 52 周中有 10 周有提交
14.1/18提交量 — 最近一年 36 次提交
5/10OpenSSF Scorecard:Maintained — 6 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 5
所用输入
commits_last_year36
human_commit_share0.95
days_since_last_push7
active_weeks_last_year10

发布纪律

76良好
评分方式
27/27有发布版本 — 已发布 53 个发布版本
36/36发布时效 — 最近一次发布版本于 6 天前
12.6/27发布节奏 — 约每 217 天发布一次
0/10OpenSSF Scorecard:Signed-Releases — Project has not signed or included provenance with any releases.
所用输入
releases_count53
latest_release_tagv0.5.2
releases_from_tags
days_since_latest_release6
mean_days_between_releases217

社区与采用

项目是否拥有用户、下载量与关注度,并具备欢迎贡献者参与的配置?

51中等 · 占总体的 18%
评分方式
35.3/60星标 — 150 个星标
10.5/25复刻 — 19 个复刻
5.6/15关注者 — 11 位关注者
所用输入
forks19
stars150
watchers11
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history

社区健康

50中等
评分方式
22.5/22.5README
22.5/22.5许可证 — 可识别的许可证(GPL-2.0)
0/18CONTRIBUTING 指南
0/13.5行为准则
0/7.2议题模板
0/6.3PR 模板
所用输入
has_readme
has_license
has_contributing
has_issue_template
has_code_of_conduct
has_pull_request_template

可持续性与治理

项目能否在其成员之外延续——巴士系数、响应能力、由谁支持,以及软件包的维护状况?

63中等 · 占总体的 24%
评分方式
9/54巴士系数 — 1 位贡献者贡献了半数提交
0.3/22.5提交分布 — 头号贡献者编写了 99% 的提交
6.8/13.5贡献者广度 — 5 位贡献者
6/10OpenSSF Scorecard:Contributors — project has 2 contributing companies or organizations -- score normalized to 6
所用输入
bus_factor1
contributors_sampled5
top_contributor_share0.986
评分方式
42.3/46.8议题解决 — 90% 的议题已关闭
38.2/38.3PR 接受 — 已裁定的 PR 中 9/9 已合并
0/15OpenSSF Scorecard:Code-Review — Found 1/19 approved changesets -- score normalized to 0
所用输入
merged_prs9
open_issues2
closed_issues19
issue_closed_ratio0.905
closed_unmerged_prs0
评分方式
30/30所有权背书 — 组织持有
0/20已验证域名
12.3/25所有者影响力 — evolbioinfo 有 50 位关注者
22.9/25既往记录 — 30 个公开仓库,账户约 9 年
所用输入
followers50
owner_typeOrganization
is_verified
owner_loginevolbioinfo
public_repos30
account_age_days3,437
评分方式
25/25已发布且可解析 — go 上有 1 个软件包
35/35发布时效 — 最近一次发布于 22 天前
20/20版本历史 — 40 个已发布版本
20/20未被弃用 — 活跃,未被弃用或撤回
所用输入
packagesgithub.com/evolbioinfo/gotree
ecosystemsgo
any_deprecated
min_days_since_publish22

工程质量

基础的工程与文档实践是否到位?

81良好 · 占总体的 20%

工程实践

68中等
评分方式
24/24CI 工作流 — 1 个工作流
24/24存在测试
0/16Linter 配置
0/9.6Pre-commit 钩子
0/6.4.editorconfig
20/20OpenSSF Scorecard:CI-Tests — 3 out of 3 merged PRs checked by a CI test -- score normalized to 10
所用输入
has_ci
has_tests
has_editorconfig
has_linter_config
has_precommit_config

文档

100优秀
评分方式
30/30README
25/25文档目录
15/15文档 / 主页站点 — https://research.pasteur.fr/en/software/goalign-gotree/
10/10仓库描述
10/10主题标签 — 7 个主题标签
10/10Wiki
所用输入
topicsphylogeny, newick, tree, tree-structure, itol, gotree, nexus
has_wiki
homepagehttps://research.pasteur.fr/en/software/goalign-gotree/
has_readme
has_docs_dir
has_description

安全

可见的安全与供应链实践是否稳固,且不存在未解决的高风险司法辖区暴露?

37存在风险 · 占总体的 16%

安全态势

30存在风险
评分方式
7.5/7.5Binary-Artifacts — no binaries found in the repo
0/7.5Branch-Protection — 无数据
2.5/2.5CI-Tests — 3 out of 3 merged PRs checked by a CI test -- score normalized to 10
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
0/7.5Code-Review — Found 1/19 approved changesets -- score normalized to 0
1.5/2.5Contributors — project has 2 contributing companies or organizations -- score normalized to 6
10/10Dangerous-Workflow — no dangerous workflow patterns detected
0/7.5Dependency-Update-Tool — no update tool detected
0/5Fuzzing — project is not fuzzed
2.5/2.5许可证 — license file detected
3.8/7.5Maintained — 6 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 5
0/5Packaging — 无数据
0/5Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
0/5SAST — SAST tool is not run on all commits -- score normalized to 0
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — Project has not signed or included provenance with any releases.
0/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
0/7.5Vulnerabilities — 12 existing vulnerabilities detected
所用输入
sourceopenssf_scorecard
checks_evaluated16
scorecard_versionv5.5.0
checks_inconclusive2
scorecard_aggregate3
已排除计分(无数据或不适用):branch_protection, packaging。 其余权重已重新归一化。
评分方式
14/35直接依赖不含已知公告 — 1 个受影响:golang.org/x/image v0.11.0 (high 7.5)
0/25间接依赖不含已知公告 — 在此范围内,传递依赖集合无法与开发和测试依赖区分
33.7/40没有长期未处理的公告 — 1 个携带公告的软件包超过 90 天未处理;最早一条发布于 756 天前
所用输入
sourceosv
advisories16
affected_packages4
assessed_packages39
unassessed_packages0
affected_by_severityhigh 1, moderate 1, unknown 2
direct_affected_packages1
已排除计分(无数据或不适用):间接依赖不含已知公告。 其余权重已重新归一化。 已将 39 个已解析依赖与 OSV 比对。 该仓库未发布任何索引可解析的软件包,因此改为评估仓库依赖图。该图将开发与测试版本固定同交付的依赖混在一起,因此仅对声明的运行时依赖计分;传递性发现仅作为背景信息列出,不计入评分。 未对可达性进行分析。

AI 就绪度

该仓库在多大程度上具备与 AI 编码代理协同开发与维护的条件?这是一枚独立的实验性徽章——权重为 0.0,因此单独呈现,不影响总体健康评分。

48存在风险 · 占总体的 0%
评分方式
0/45代理指令 — 没有 CLAUDE.md / AGENTS.md / 编辑器规则
0/15机器可读文档(llms.txt)
5.6/40可读的提交历史 — 95 次人类提交中有 10 次说明了意图(结构化标题或解释性正文)
所用输入
has_llms_txt
legible_history_share0.105
agent_instruction_files
agent_instruction_max_bytes
评分方式
18/18一条命令的引导启动 — Makefile
22/22自动化测试
0/11Lint / 格式化配置
11/11静态类型检查 — Go(静态类型)
10/10可复现环境 — lockfile
0/10已体现的代理实践 — 最近 100 次提交中没有代理编写的提交
0/8自动化维护 — 未观察到自动依赖更新
0/10OpenSSF Scorecard:Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
所用输入
has_nix
has_tests
lockfilesgo.sum
has_dockerfile
typed_language
bootstrap_filesMakefile
has_devcontainer
has_linter_config
typecheck_configs
agent_commit_share0
toolchain_manifestsgo.mod
dependency_bot_commit_share0
评分方式
45/45可类型检查的代码 — Go(静态类型)
54.7/55可控的文件大小 — 采样的 180 个源文件中有 1 个超过 60KB
所用输入
primary_languageGo
largest_source_bytes61,630
source_files_sampled180
oversized_source_files1

关键数据

150GitHub 星标
5贡献者
36最近 12 个月提交数
7距最近推送天数
53发布版本数
1巴士系数(bus factor)
2开放议题
Go软件包生态系统数

数据采集警告

  • Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token

更多细节

Star 与 Fork 历史 0 ★ / 19 ⇿
0Star
19Fork
17发布

每颗 star 和每个 fork 的添加时间,来自 GitHub 并按天汇总。累计增长位于其构成来源——每日新增——的正上方,二者可相互对照:稳定的自然增长与短暂的突增形态截然不同。当这一差别可被衡量时,它会作为增长真实性予以报告。

0481216201922018-122022-092026-06
主版本 0次版本 3修订 7

每个点涵盖 7 天。

OpenSSF Scorecard 3.0 / 10
3.0综合

来自开源项目 OpenSSF Scorecard 的独立、工具无关的安全评估。每项检查奖励的是安全实践本身,而非特定供应商的工具。Scorecard 无法判定的检查项标记为 不适用,并从安全评分中剔除(绝不按零分计)。Scorecard v5.5.0 · 2026-07-22 15:26 UTC

10Binary-Artifactsno binaries found in the repo
不适用Branch-Protectioninternal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md
10CI-Tests3 out of 3 merged PRs checked by a CI test -- score normalized to 10
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
0Code-ReviewFound 1/19 approved changesets -- score normalized to 0
6Contributorsproject has 2 contributing companies or organizations -- score normalized to 6
10Dangerous-Workflowno dangerous workflow patterns detected
0Dependency-Update-Toolno update tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
5Maintained6 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 5
不适用Packagingpackaging workflow not detected
0Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 0
0SASTSAST tool is not run on all commits -- score normalized to 0
0Security-Policysecurity policy file not detected
0Signed-ReleasesProject has not signed or included provenance with any releases.
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
0Vulnerabilities12 existing vulnerabilities detected
直接依赖 11
注册表软件包版本约束清单文件
Gogithub.com/ajstarks/svgov0.0.0-20211024235047-1546f124cd8bgo.mod
Gogithub.com/evolbioinfo/goalignv0.3.7-0.20230906113011-fcecb09f9d43go.mod
Gogithub.com/fredericlemoine/bitsetv1.2.0go.mod
Gogithub.com/fredericlemoine/cobrashellv0.0.0-20180921081141-49c72f93426cgo.mod
Gogithub.com/fredericlemoine/gostatsv0.2.0go.mod
Gogithub.com/golang/freetypev0.0.0-20170609003504-e2365dfdc4a0go.mod
Gogithub.com/jlaffaye/ftpv0.0.0-20210307004419-5d4190119067go.mod
Gogithub.com/llgcode/draw2dv0.0.0-20210313082411-577c1ead272ago.mod
Gogithub.com/spf13/cobrav1.5.0go.mod
Gogolang.org/x/imagev0.11.0go.mod
Gogonum.org/v1/plotv0.14.0go.mod
全部依赖 39

来自 GitHub 依赖图的完整解析依赖集合:11 个直接依赖与 28 个间接(传递)软件包。仓库提交锁文件时,传递闭包才是完整的。

注册表软件包版本关系
Gogithub.com/ajstarks/svgov0.0.0-20211024235047-1546f124cd8b直接
Gogithub.com/evolbioinfo/goalignv0.3.7-0.20230906113011-fcecb09f9d43直接
Gogithub.com/fredericlemoine/bitsetv1.2.0直接
Gogithub.com/fredericlemoine/cobrashellv0.0.0-20180921081141-49c72f93426c直接
Gogithub.com/fredericlemoine/gostatsv0.2.0直接
Gogithub.com/golang/freetypev0.0.0-20170609003504-e2365dfdc4a0直接
Gogithub.com/jlaffaye/ftpv0.0.0-20210307004419-5d4190119067直接
Gogithub.com/llgcode/draw2dv0.0.0-20210313082411-577c1ead272a直接
Gogithub.com/spf13/cobrav1.5.0直接
Gogolang.org/x/imagev0.11.0直接
Gogonum.org/v1/plotv0.14.0直接
Gogioui.orgv0.2.0间接
Gogioui.org/cpuv0.0.0-20220412190645-f1e9e8c3b1f7间接
Gogioui.org/shaderv1.0.6间接
Gogioui.org/xv0.2.0间接
Gogit.sr.ht/~sbinet/ggv0.5.0间接
Gogithub.com/abiosoft/ishellv2.0.0+incompatible间接
Gogithub.com/abiosoft/readlinev0.0.0-20180607040430-155bce2042db间接
Gogithub.com/andybalholm/strokev0.0.0-20221221101821-bd29b49d73f0间接
Gogithub.com/armon/go-radixv1.0.0间接
Gogithub.com/campoy/embedmdv1.0.0间接
Gogithub.com/fatih/colorv1.10.0间接
Gogithub.com/flynn-archive/go-shlexv0.0.0-20150515145356-3f9db97f8568间接
Gogithub.com/go-fonts/liberationv0.3.1间接
Gogithub.com/go-latex/latexv0.0.0-20230307184459-12ec69307ad9间接
Gogithub.com/go-pdf/fpdfv0.8.0间接
Gogithub.com/go-text/typesettingv0.0.0-20230803102845-24e03d8b5372间接
Gogithub.com/inconshreveable/mousetrapv1.0.1间接
Gogithub.com/mattn/go-colorablev0.1.8间接
Gogithub.com/mattn/go-isattyv0.0.12间接
Gogithub.com/pmezard/go-difflibv1.0.0间接
Gogithub.com/spf13/pflagv1.0.5间接
Gogithub.com/ulikunitz/xzv0.5.10间接
Gogolang.org/x/expv0.0.0-20230801115018-d63ba01acd4b间接
Gogolang.org/x/exp/shinyv0.0.0-20230801115018-d63ba01acd4b间接
Gogolang.org/x/sysv0.11.0间接
Gogolang.org/x/textv0.12.0间接
Gogonum.org/v1/gonumv0.14.0间接
Gorsc.io/pdfv0.1.1间接
依赖安全公告 4

该仓库未发布可被索引解析的包,因此评估的是其自身的依赖图——共 39 个包,其中也包含从不交付的开发与测试版本固定:4 个存在已知公告,1 个为直接依赖。

软件包版本关系严重程度公告数修复版本
golang.org/x/imagev0.11.0直接120.43.0
github.com/ulikunitz/xzv0.5.10间接20.5.15
golang.org/x/sysv0.11.0间接未知10.44.0
golang.org/x/textv0.12.0间接未知10.39.0

公告表示依赖图中记录的版本落入某条公告的受影响范围。可达性未经分析,且依赖图包含开发与测试的版本固定——某项发现可能只涉及工具链而非交付的软件。

原始 JSON 报告 机器可读
{
  "data": {
    "repo": {
      "topics": [
        "phylogeny",
        "newick",
        "tree",
        "tree-structure",
        "itol",
        "gotree",
        "nexus"
      ],
      "is_fork": false,
      "size_kb": 2145,
      "has_wiki": true,
      "homepage": "https://research.pasteur.fr/en/software/goalign-gotree/",
      "languages": {
        "Go": 659007,
        "Shell": 80334,
        "Makefile": 1853
      },
      "pushed_at": "2026-07-15T15:22:55Z",
      "created_at": "2016-07-27T15:39:01Z",
      "owner_type": "Organization",
      "updated_at": "2026-07-15T15:41:21Z",
      "description": "Gotree: a set of command line tools and an API to manipulate phylogenetic trees.",
      "is_archived": false,
      "is_disabled": false,
      "license_spdx": "GPL-2.0",
      "default_branch": "master",
      "license_spdx_raw": "GPL-2.0",
      "primary_language": "Go",
      "significant_languages": [
        "Go",
        "Shell"
      ]
    },
    "owner": {
      "blog": null,
      "name": "Evolutionary Bioinformatics",
      "type": "Organization",
      "login": "evolbioinfo",
      "company": null,
      "location": "Paris, France",
      "followers": 50,
      "avatar_url": "https://avatars.githubusercontent.com/u/25950370?v=4",
      "created_at": "2017-02-22T08:56:58Z",
      "is_verified": null,
      "public_repos": 30,
      "account_age_days": 3437
    },
    "license": {
      "state": "standard",
      "spdx_id": "GPL-2.0",
      "raw_spdx": "GPL-2.0",
      "file_present": true,
      "scorecard_found": true,
      "profile_has_license": true
    },
    "activity": {
      "releases": [
        {
          "tag": "v0.5.2",
          "kind": "patch",
          "published_at": "2026-07-15T15:30:34Z"
        },
        {
          "tag": "v0.5.1",
          "kind": "patch",
          "published_at": "2025-12-15T14:44:16Z"
        },
        {
          "tag": "v0.5.0",
          "kind": "minor",
          "published_at": "2025-07-09T15:38:33Z"
        },
        {
          "tag": "v0.4.5",
          "kind": "patch",
          "published_at": "2023-11-28T16:29:51Z"
        },
        {
          "tag": "v0.4.4",
          "kind": "patch",
          "published_at": "2022-12-09T11:24:19Z"
        },
        {
          "tag": "v0.4.4a",
          "kind": "other",
          "published_at": "2022-06-29T09:33:36Z"
        },
        {
          "tag": "v0.4.3",
          "kind": "patch",
          "published_at": "2022-04-14T08:03:45Z"
        },
        {
          "tag": "v0.4.3a",
          "kind": "other",
          "published_at": "2021-11-26T15:27:29Z"
        },
        {
          "tag": "v0.4.2",
          "kind": "patch",
          "published_at": "2021-09-07T09:11:03Z"
        },
        {
          "tag": "v0.4.1",
          "kind": "patch",
          "published_at": "2021-03-10T15:59:18Z"
        },
        {
          "tag": "v0.4.1c",
          "kind": "other",
          "published_at": "2021-01-15T14:15:41Z"
        },
        {
          "tag": "v0.4.1b",
          "kind": "other",
          "published_at": "2021-01-06T22:28:22Z"
        },
        {
          "tag": "v0.4.1a",
          "kind": "other",
          "published_at": "2020-08-24T14:02:02Z"
        },
        {
          "tag": "v0.4.0",
          "kind": "minor",
          "published_at": "2020-03-10T13:23:51Z"
        },
        {
          "tag": "v0.4.0a",
          "kind": "other",
          "published_at": "2020-02-05T21:22:20Z"
        },
        {
          "tag": "v0.3.1",
          "kind": "patch",
          "published_at": "2019-10-02T15:24:10Z"
        },
        {
          "tag": "v0.3.1a",
          "kind": "other",
          "published_at": "2019-06-17T12:37:46Z"
        },
        {
          "tag": "v0.3.0",
          "kind": "minor",
          "published_at": "2019-04-29T09:20:27Z"
        },
        {
          "tag": "v0.3.0a",
          "kind": "other",
          "published_at": "2018-09-21T14:24:41Z"
        },
        {
          "tag": "v0.2.11",
          "kind": "patch",
          "published_at": "2018-08-02T14:16:16Z"
        },
        {
          "tag": "v0.2.11a",
          "kind": "other",
          "published_at": "2018-05-07T14:33:56Z"
        },
        {
          "tag": "v0.2.10",
          "kind": "patch",
          "published_at": "2018-04-10T12:47:52Z"
        },
        {
          "tag": "v0.2.10c",
          "kind": "other",
          "published_at": "2018-03-26T09:56:51Z"
        },
        {
          "tag": "v0.2.10b",
          "kind": "other",
          "published_at": "2018-03-14T10:50:16Z"
        },
        {
          "tag": "v0.2.10a",
          "kind": "other",
          "published_at": "2018-03-12T09:24:06Z"
        },
        {
          "tag": "v0.2.9",
          "kind": "patch",
          "published_at": "2018-03-08T13:01:39Z"
        },
        {
          "tag": "v0.2.8b",
          "kind": "other",
          "published_at": "2018-03-02T13:30:00Z"
        },
        {
          "tag": "v0.2.7",
          "kind": "patch",
          "published_at": "2018-02-02T09:15:01Z"
        },
        {
          "tag": "v0.2.7b",
          "kind": "other",
          "published_at": "2018-01-23T13:53:49Z"
        },
        {
          "tag": "v0.2.6",
          "kind": "patch",
          "published_at": "2018-01-09T13:07:53Z"
        },
        {
          "tag": "v0.2.5",
          "kind": "patch",
          "published_at": "2018-01-08T17:11:36Z"
        },
        {
          "tag": "v0.2.4",
          "kind": "patch",
          "published_at": "2017-11-06T10:30:31Z"
        },
        {
          "tag": "v0.2.3",
          "kind": "patch",
          "published_at": "2017-09-06T07:26:33Z"
        },
        {
          "tag": "v0.2.2",
          "kind": "patch",
          "published_at": "2017-07-03T12:08:40Z"
        },
        {
          "tag": "v0.2.1",
          "kind": "patch",
          "published_at": "2017-06-09T13:11:02Z"
        },
        {
          "tag": "v0.2.0",
          "kind": "minor",
          "published_at": "2017-04-25T12:25:55Z"
        },
        {
          "tag": "v0.1.14-b",
          "kind": "prerelease",
          "published_at": "2017-04-04T09:34:03Z"
        },
        {
          "tag": "v0.1.14-a",
          "kind": "prerelease",
          "published_at": "2017-03-31T12:59:26Z"
        },
        {
          "tag": "v0.1.13",
          "kind": "patch",
          "published_at": "2017-03-10T15:41:05Z"
        },
        {
          "tag": "v0.1.12",
          "kind": "patch",
          "published_at": "2017-03-01T08:51:39Z"
        },
        {
          "tag": "v0.1.11",
          "kind": "patch",
          "published_at": "2017-02-22T11:12:47Z"
        },
        {
          "tag": "v0.1.10",
          "kind": "patch",
          "published_at": "2017-02-17T13:48:35Z"
        },
        {
          "tag": "v0.1.10-alpha",
          "kind": "prerelease",
          "published_at": "2017-02-16T15:56:25Z"
        },
        {
          "tag": "v0.1.9",
          "kind": "patch",
          "published_at": "2017-02-13T12:04:11Z"
        },
        {
          "tag": "v0.1.8",
          "kind": "patch",
          "published_at": "2017-01-30T16:01:54Z"
        },
        {
          "tag": "v0.1.7",
          "kind": "patch",
          "published_at": "2017-01-13T15:47:27Z"
        },
        {
          "tag": "v0.1.6",
          "kind": "patch",
          "published_at": "2016-12-12T09:15:16Z"
        },
        {
          "tag": "v0.1.5",
          "kind": "patch",
          "published_at": "2016-12-08T17:00:40Z"
        },
        {
          "tag": "v0.1.4",
          "kind": "patch",
          "published_at": "2016-11-29T14:47:58Z"
        },
        {
          "tag": "v0.1.3",
          "kind": "patch",
          "published_at": "2016-11-09T12:45:46Z"
        },
        {
          "tag": "v0.1.2",
          "kind": "patch",
          "published_at": "2016-10-31T10:02:23Z"
        },
        {
          "tag": "v0.1.1",
          "kind": "patch",
          "published_at": "2016-10-05T13:14:53Z"
        },
        {
          "tag": "v0.1.0",
          "kind": "minor",
          "published_at": "2016-10-05T12:08:53Z"
        }
      ],
      "recent_commits": [
        {
          "oid": "8ce3ce6eb5b14261b0be7ed2b1b02bcf22dfc305",
          "body": "…pecial character #29",
          "is_bot": false,
          "headline": "Updated newick Parser to support quoted tip names containing newick s…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-06-30T07:47:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d066f5cdf0b8e29358cced433ccc0717387adb7d",
          "body": null,
          "is_bot": false,
          "headline": "Merge branch 'master' into dev",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-06-30T07:24:12Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7e072fdb388fa41565d355507e804a016f1a2f08",
          "body": "fix: correct Unkown->Unknown typo in error messages",
          "is_bot": false,
          "headline": "Merge pull request #31 from Jah-yee/master",
          "author_name": "fredericlemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-06-30T07:23:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "847f5273122605c56adf48e134416ac2aed1b439",
          "body": null,
          "is_bot": false,
          "headline": "fix: correct Unkown->Unknown typo in error messages",
          "author_name": "Jah-yee",
          "author_login": "Jah-yee",
          "committed_at": "2026-06-30T05:52:48Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e0a02020f1e53a1ca2492ea093c2ed09ad52cd9b",
          "body": "…n --outtipfile",
          "is_bot": false,
          "headline": "Added information on pruned tips as output of gotree prune with optio…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-06-11T12:07:40Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "01ea5a156df826751597bbe82a914875103b8665",
          "body": "… change",
          "is_bot": false,
          "headline": "Added option --tip to brlen set: to select a unique extrnal branch to…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-06-10T10:55:06Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d7c541e5dd0d3adf98fe25bf958fa5047245a9ca",
          "body": null,
          "is_bot": false,
          "headline": "Merge branch 'master' into tipneigbor",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-04-02T14:30:39Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "83cca67fdcf64af47f6f3318d3eebdcb417d45a4",
          "body": null,
          "is_bot": false,
          "headline": "Corrected part of a bug in radial tree drawing #25",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-04-02T14:25:12Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "da6636167067bcfed93bd8814a2f6cf45b1890ea",
          "body": null,
          "is_bot": false,
          "headline": "Merged master",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-03-27T13:27:55Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "752734de4534beca5a96146a90383a5b6649408e",
          "body": null,
          "is_bot": false,
          "headline": "Added option --tip to gotree compare neighborhood",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-03-26T16:00:17Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ce5c3df83e07a220b4597ea4a97ee4bb226f456a",
          "body": null,
          "is_bot": false,
          "headline": "Moved sort.go to sliceutils package",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-03-26T14:04:30Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9752a3d8f17096a7b0a44f765ed4070272738422",
          "body": null,
          "is_bot": false,
          "headline": "Added test for gotree compare neighborhood",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-03-26T14:03:13Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8ab52855d08ba1567e62534a45be036da9eb32e0",
          "body": null,
          "is_bot": false,
          "headline": "Added -m metric option to gotree compare neighborhood + documentation",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-03-26T08:40:42Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b4ef53cb666bf1bde0371104117f8318309d8d3c",
          "body": null,
          "is_bot": false,
          "headline": "Add some tips functions",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-03-25T10:33:05Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4e3bb123d481138c061fdfe9497c1b2a69d98a0d",
          "body": "…-functionalities\n\nUpdate README.md to reflect current functionalities",
          "is_bot": false,
          "headline": "Merge pull request #28 from evolbioinfo/copilot/update-readme-reflect…",
          "author_name": "fredericlemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-03-13T16:38:00Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6382c3b3990d59978ea4b9d48d7d2ce6f557697d",
          "body": null,
          "is_bot": false,
          "headline": "Update README.md",
          "author_name": "fredericlemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-03-13T16:35:50Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "747998d197cdcd39b5d407838fac250029bf7668",
          "body": null,
          "is_bot": false,
          "headline": "Update README.md",
          "author_name": "fredericlemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-03-13T16:35:43Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "50c8109c0117a8656303bcb4a7508ef9773ba0c4",
          "body": null,
          "is_bot": false,
          "headline": "Update README.md",
          "author_name": "fredericlemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-03-13T16:35:35Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "49dc32de471437be4d60e89701745823bfc6ab6b",
          "body": "Co-authored-by: fredericlemoine <16349382+fredericlemoine@users.noreply.github.com>",
          "is_bot": true,
          "headline": "Update README.md to reflect current functionalities",
          "author_name": "copilot-swe-agent[bot]",
          "author_login": "Copilot",
          "committed_at": "2026-03-13T16:18:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "83349089033077482e4a04fdbec89679f19235e2",
          "body": null,
          "is_bot": true,
          "headline": "Initial plan",
          "author_name": "copilot-swe-agent[bot]",
          "author_login": "Copilot",
          "committed_at": "2026-03-13T16:12:55Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "13dffc07e076d1c71cac53bdb5c8f8ad59bfb4b2",
          "body": "…rsity-option\n\ndocs: add `--diversity` flag to `gotree prune` docs and generate example SVGs",
          "is_bot": false,
          "headline": "Merge pull request #27 from evolbioinfo/copilot/add-gotree-prune-dive…",
          "author_name": "fredericlemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-03-13T16:08:14Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f2ee59d52e976a9e49d84f272d29f68e79a41db0",
          "body": "Co-authored-by: fredericlemoine <16349382+fredericlemoine@users.noreply.github.com>",
          "is_bot": true,
          "headline": "docs: generate prune_8.svg and prune_9.svg for diversity example",
          "author_name": "copilot-swe-agent[bot]",
          "author_login": "Copilot",
          "committed_at": "2026-03-13T12:44:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c16fc05255ee267ced154bb482d62a272bed3c35",
          "body": "Co-authored-by: fredericlemoine <16349382+fredericlemoine@users.noreply.github.com>",
          "is_bot": true,
          "headline": "docs: add --diversity option to gotree prune documentation",
          "author_name": "copilot-swe-agent[bot]",
          "author_login": "Copilot",
          "committed_at": "2026-03-13T12:36:00Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cda92134c89bd5ac99aaca97de66839d1cffd00d",
          "body": null,
          "is_bot": true,
          "headline": "Initial plan",
          "author_name": "copilot-swe-agent[bot]",
          "author_login": "Copilot",
          "committed_at": "2026-03-13T12:33:05Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1f633c37a2d5db24161837e511669a74a03fb0b8",
          "body": "…roach",
          "is_bot": false,
          "headline": "Upudated random number generator with seed: using the recommended app…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2026-01-09T17:42:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e576594639bbc5b8b161e090b84ae3a1b0170804",
          "body": null,
          "is_bot": false,
          "headline": "Temporary setting to revert to old random seed handling",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-11T20:32:00Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "47f9aaefbb75438ba53186af838505706e13e9ed",
          "body": null,
          "is_bot": false,
          "headline": "Updated to go 1.24.11",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-11T15:00:27Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0209ac631ce1999733abc0288ed7a130c0253b85",
          "body": null,
          "is_bot": false,
          "headline": "Updated README",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-11T10:02:25Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9dd0d07b2f3bae130850715de7f55d04b960e3e4",
          "body": null,
          "is_bot": false,
          "headline": "Updated README",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-11T10:01:51Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3e6b5c9f7fd289e2f93d10a08f2d970f835ab3a3",
          "body": null,
          "is_bot": false,
          "headline": "Corrected conda badge",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-11T10:00:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a7fc2be39a5710c2c51a3e06edff88332971d3ff",
          "body": null,
          "is_bot": false,
          "headline": "Updated conda badge",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-11T09:58:53Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "879a68baaf1808e63e0ada54831fba6131ac7bfe",
          "body": null,
          "is_bot": false,
          "headline": "Parse confidence value from nextstrain tree",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-12-06T22:14:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "40ae0312eb25c9467def7b852ce459715d71411a",
          "body": null,
          "is_bot": false,
          "headline": "Optimized update of the closest tip pairs in prune --diversity --random",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-10-22T17:29:05Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ad827fed30ab316d8fe6acb3d2843b98f69abc8c",
          "body": "…rsity",
          "is_bot": false,
          "headline": "Added tree pruning keeping diversity gotree prune --random <x> --dive…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-10-22T15:53:00Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "42685fa03b646356cfe6d743ad34b6c32ff9c6df",
          "body": "…nodes",
          "is_bot": false,
          "headline": "Added Closest Tips information (from each node+tips) in gotree stats …",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-10-22T11:57:24Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "fe655a1d10e4984290a8d9d392a1203a277db740",
          "body": null,
          "is_bot": false,
          "headline": "Updated logo",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-10-09T08:05:51Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "774366bd09c82c9497b7e35c952ee2eadce85703",
          "body": null,
          "is_bot": false,
          "headline": "Added option --rooted to gotree resolve",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-07-09T15:18:55Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ad36c89db283c22e57fa08028a8ba9073b409ca1",
          "body": null,
          "is_bot": false,
          "headline": "Added lines for rates in gotree rtt",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-07-09T13:11:45Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "344555820752eb3a589a66ebc41db08fa8332be5",
          "body": null,
          "is_bot": false,
          "headline": "Updated rtt to plot internal nodes and tips with different colors",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-07-09T10:50:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0a833f3b6c63ad1e025ed97db6571564e02fec3e",
          "body": "- updated the date parsing function to work with yyy-mm-dd dates",
          "is_bot": false,
          "headline": "- Added option to gotree rtt for selecting tips only",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-07-08T17:05:43Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a9b778702cbc3b08a4eae01cfc149e33e5bf446d",
          "body": null,
          "is_bot": false,
          "headline": "Added rtt command",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-07-03T08:51:56Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "fd00168e4a39916375acaa40f684108509ec5ab8",
          "body": null,
          "is_bot": false,
          "headline": "Updated date parsing",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-06-25T16:04:00Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e2bf76bc7820ebda891d4508a2058e798e08cf8e",
          "body": "…d postOrderRecur",
          "is_bot": false,
          "headline": "Added option --subtrees to gotree annotate + updated preOrderRecur an…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-06-05T12:08:56Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a0ef8849bde0449763d552d5406f58e1bf1f7477",
          "body": null,
          "is_bot": false,
          "headline": "Corrected reroot outgroup with a 0 length branch",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2025-05-09T16:29:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a631422dbed3e92c91a1b27c2f8e3a24dfbc63f7",
          "body": null,
          "is_bot": false,
          "headline": "Added doc + test",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-09-26T19:44:29Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "bdbd8f1fb4f01a6dbef13a2a97530f95011bd1ba",
          "body": null,
          "is_bot": false,
          "headline": "Renamed gotree prune date to cut date",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-09-26T19:17:43Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "de3a2f0cba1706eb75d6e620a35224fc729be183",
          "body": null,
          "is_bot": false,
          "headline": "Added max-date to gotree prune date",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-09-26T19:11:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "69fcc189c6eba071f6e2e255f49befe6f596f903",
          "body": null,
          "is_bot": false,
          "headline": "Added cut min date command (gotree prune date --min-date)",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-09-26T17:38:24Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1b3333276c155191877693d4e5501f4d7783d5b2",
          "body": null,
          "is_bot": false,
          "headline": "Moved dates functions",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-09-26T15:10:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7dfcea6fb113c06ead381e17532225d3318f55e3",
          "body": null,
          "is_bot": false,
          "headline": "Merge branch 'master' of github.com:fredericlemoine/gotree",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-07-04T11:59:47Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "56d00aab23f035142481446c97b1b5fa00e65910",
          "body": "Use a shebang to enforce running test.sh in bash",
          "is_bot": false,
          "headline": "Merge pull request #24 from krtab/shebang",
          "author_name": "fredericlemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-04-29T11:48:17Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f44057354b2cc75e3e569244ff2920203eb51acf",
          "body": "Commit b959a7f3eccdebda804206232a37f1d651f5dd5c was made because\n`test.sh` cannot run on systems where the default shell is not bash\ncompatible (e.g. zsh). (cf https://github.com/evolbioinfo/gotree/pull/23)\n\nA [shebang](https://en.wikipedia.org/wiki/Shebang_(Unix)) allows to\nforce the use of bash to interpret the shell script. This version\nusing `/usr/bin/env` should be the most portable.",
          "is_bot": false,
          "headline": "Use a shebang to enforce running test.sh in bash",
          "author_name": "Arthur Carcano",
          "author_login": "krtab",
          "committed_at": "2024-04-29T08:06:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c8ec0e01417400a2d1a0ec8abcb064693a8a7450",
          "body": "Fixing newick parsing",
          "is_bot": false,
          "headline": "Merge pull request #23 from lucblassel/trailing_whitespace",
          "author_name": "fredericlemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-04-29T07:13:46Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b959a7f3eccdebda804206232a37f1d651f5dd5c",
          "body": null,
          "is_bot": false,
          "headline": "Specifying bash as test.sh language",
          "author_name": "Luc Blassel",
          "author_login": "lucblassel",
          "committed_at": "2024-04-28T09:40:24Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9f0bbccb9b4cd4693e1c70e3a4ae90fc222ce863",
          "body": null,
          "is_bot": false,
          "headline": "Fixing newick parsing to accepts trailing whitespace after semicolon",
          "author_name": "Luc Blassel",
          "author_login": "lucblassel",
          "committed_at": "2024-04-28T09:37:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b324e738b1ac3e3bb1945f50fb40132a9fbc2b5b",
          "body": null,
          "is_bot": false,
          "headline": "Added options min-len and max-len to gotree brlen setrand",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-02-26T22:28:08Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "df34e913b4917e0a41a02bb491d8d66de32df979",
          "body": null,
          "is_bot": false,
          "headline": "Corrected equal min dist branches in transfer index",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-02-08T16:14:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d6c626874c559d93c306d5456aee1a01c6b740a8",
          "body": null,
          "is_bot": false,
          "headline": "Added --terminal option to comment comment clear",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-02-08T13:49:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8907260e4c8dcd1d05837bed784ea03552ebcd33",
          "body": null,
          "is_bot": false,
          "headline": "Updated README",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-01-23T13:34:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4ded0776cdcec88cd534111963802c54a780b161",
          "body": null,
          "is_bot": false,
          "headline": "Updated go to 1.21.6",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-01-18T15:24:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6b21f2da063df024311a5e6b0122e4d24c837a27",
          "body": null,
          "is_bot": false,
          "headline": "Added missing file for option --eems",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-01-16T09:24:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b1a0a7146c8de242a3471fd8ccb47e5e0b9c3608",
          "body": null,
          "is_bot": false,
          "headline": "Corrected output of compute mutations --eem",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-01-15T22:57:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "72dcae63e87b12dcd94391f03d8bc218b8afd102",
          "body": null,
          "is_bot": false,
          "headline": "Added option --eems to goalign compute mutations",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2024-01-15T22:53:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7794869d6c5b00429ed52320f0d554f535f88915",
          "body": null,
          "is_bot": false,
          "headline": "Added option --avg to gotree matrix",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-12-19T15:48:15Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8ba91256ec5a2f98fd2f8cc80904f4df998a2761",
          "body": "…tations",
          "is_bot": false,
          "headline": "gotree ltt takes node dates from the tree if present, otherwise in mu…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-30T15:21:00Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6e5bc94a1f907cc9a7fce43b03cae1f9b4caac51",
          "body": null,
          "is_bot": false,
          "headline": "Remove debug",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-30T15:19:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "dcc8ecad99d2a2310ee9f2e25593ad7f55e96887",
          "body": null,
          "is_bot": false,
          "headline": "Corrected gotree brlen add parameter name",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-29T15:28:16Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "48b98ab9ce78ca304df84c6a94cc5fa51ef950c3",
          "body": null,
          "is_bot": false,
          "headline": "Added gotree brlen add command",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-29T15:27:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e903d370c0dfd5c72fc454c388e6ba73fc8d88b0",
          "body": null,
          "is_bot": false,
          "headline": "Added ltt test",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-28T16:05:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4b435e03559aa29c3d3d8bb1b97d0a098ee9e780",
          "body": null,
          "is_bot": false,
          "headline": "Updated README",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-28T15:57:35Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6d8d3780462087df625c6c89091d0aa91549b333",
          "body": null,
          "is_bot": false,
          "headline": "Updated doc for gotree ltt",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-28T15:31:48Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8024b9625cd90d43bda1d9cadb38e62933472039",
          "body": null,
          "is_bot": false,
          "headline": "Corrected ltt plot",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-28T15:31:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4eb6d87fe3536ba6af54986d5507445cb1d9c9b0",
          "body": "…plot",
          "is_bot": false,
          "headline": "Added command gotree ltt : write lineage through time data, and draw …",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-28T14:56:25Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "37b384c43c9caa9041c008d0656717859307fef6",
          "body": null,
          "is_bot": false,
          "headline": "Deduplicated same x lab points in gotree ltt",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-21T11:15:17Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "52f0d9fe9007f7227a3d3fb50009de8039a475fc",
          "body": null,
          "is_bot": false,
          "headline": "Added ltt command",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-21T10:49:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9216c7b59efcaea45f9fc84f04810298e8930312",
          "body": null,
          "is_bot": false,
          "headline": "Updated gotree collapse name doc",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-13T10:39:58Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "de95a71314a6806abec6644a64861971a52b6c52",
          "body": null,
          "is_bot": false,
          "headline": "Merge branch 'master' into dev",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-12T15:28:22Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0b9f8fa0a45d2498011ff47afd0801802bee401e",
          "body": null,
          "is_bot": false,
          "headline": "Added command : gotree collapse name",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-11-12T15:27:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "753a65f4fd977d03e6f777a818983d172328b98c",
          "body": "… tip names #9",
          "is_bot": false,
          "headline": "Reverted support for quotes in comments, because of pb with quotes in…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-10-04T15:40:15Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c7e2aa160735f39e290450cf11f4ee0a415159d5",
          "body": null,
          "is_bot": false,
          "headline": "Updated newick parser to allow ';' in comments",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-09-14T12:38:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b7837b643e8136617289f863710fcf756890b7a1",
          "body": "…uotes",
          "is_bot": false,
          "headline": "Updated parser to take into account comments enclosed within single q…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-09-13T09:35:13Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "76f7e3981d033877e71a4ee2683b00951d703bfe",
          "body": null,
          "is_bot": false,
          "headline": "Added command : gotree extract mutations",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-09-06T14:21:03Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "46057ab0dfaabce8217e0dc8f80fa5c30297963e",
          "body": null,
          "is_bot": false,
          "headline": "Updated doc",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-05-31T15:03:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "55e4727dd1beba20b3c9a543c1306707f89b982c",
          "body": null,
          "is_bot": false,
          "headline": "Updated +golang.org/x/sys",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-05-31T14:52:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ac4c61dc7ff0afbb694ab4cf4ee03062733ce8a9",
          "body": null,
          "is_bot": false,
          "headline": "Updated +golang.org/x/image",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-05-31T14:49:57Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a61803bb4eecd504ec35f1594fa44253be79bbb2",
          "body": "…i has been modified: Tree functions have been updated",
          "is_bot": false,
          "headline": "Added options --internal / --external to gotree brlen subcommands. ap…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-05-31T14:43:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a77e6775ba1f61d8c951072e32712eac6f6df76c",
          "body": null,
          "is_bot": false,
          "headline": "Added the test described in #20 (by @lucblassel )",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-05-24T21:19:13Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9404121b428bf7987ae8fe75020319bb99f0a2c2",
          "body": "Adding branch length aware metrics to `gotree compare trees`",
          "is_bot": false,
          "headline": "Merge pull request #20 from lucblassel/master",
          "author_name": "fredericlemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-05-24T21:10:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "17b4a0c49078318c04229e0ab577a9b244732070",
          "body": null,
          "is_bot": false,
          "headline": "Adding weighted to compare trees command doc",
          "author_name": "Luc Blassel",
          "author_login": "lucblassel",
          "committed_at": "2023-05-24T18:18:56Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "16bb1aed47fd01b45169bc67bb42e28371a44349",
          "body": "… trees`",
          "is_bot": false,
          "headline": "Adding branch-length aware tree comparison metrics to `gotree compare…",
          "author_name": "Luc Blassel",
          "author_login": "lucblassel",
          "committed_at": "2023-05-24T18:11:23Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "287cf3370bc133bef16cf1383ecb5c3a96450a68",
          "body": "…umeric order)",
          "is_bot": false,
          "headline": "gotree matrix now outputs matrices with always the same order (alphan…",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-05-24T14:23:29Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1b5691f7885e94f4a7226d32eabf663c59124833",
          "body": null,
          "is_bot": false,
          "headline": "Updated gotree matrix --metric boot to consider tip branches",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-04-13T16:33:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "26ea287f5520a622168c4d469a9dc325b01ad530",
          "body": null,
          "is_bot": false,
          "headline": "Added option --metric to 'gotree matrix' command",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-04-13T12:44:43Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4fb145be26f38ec0c79188dda9316fedff9c4f5e",
          "body": null,
          "is_bot": false,
          "headline": "Corrected tindex computation for very distant bootstrap trees",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-02-14T15:04:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "65824c184df7d62a3210335aa9ae5a259ea18278",
          "body": null,
          "is_bot": false,
          "headline": "removed test temp file",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-01-12T10:11:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "26c8903c0d97e5f96d7c63dfc9e564fe7a66de24",
          "body": null,
          "is_bot": false,
          "headline": "Removed cpuprof file",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-01-12T10:10:47Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2a6c6e350b3565dafc639f367c67f4b62904a69f",
          "body": null,
          "is_bot": false,
          "headline": "Merge Makefile",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-01-12T10:05:00Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3d3716b2a7bc1d7396460159499aac43d9d2f3e4",
          "body": null,
          "is_bot": false,
          "headline": "Modified bin names in deploy",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-01-12T09:58:12Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e71b949028e0444a064b34f5786316d675166c8f",
          "body": null,
          "is_bot": false,
          "headline": "Updated Makefile",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2023-01-02T12:22:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8eed8eb08920fd9574ee37886083a38a7620d842",
          "body": null,
          "is_bot": false,
          "headline": "Updated Makefile",
          "author_name": "Frederic Lemoine",
          "author_login": "fredericlemoine",
          "committed_at": "2022-12-09T11:17:06Z",
          "body_truncated": false,
          "is_coding_agent": false
        }
      ],
      "releases_count": 53,
      "commits_last_year": 36,
      "latest_release_at": "2026-07-15T15:30:34Z",
      "latest_release_tag": "v0.5.2",
      "releases_from_tags": false,
      "days_since_last_push": 7,
      "active_weeks_last_year": 10,
      "days_since_latest_release": 6,
      "mean_days_between_releases": 217
    },
    "community": {
      "has_readme": true,
      "has_license": true,
      "has_description": true,
      "has_contributing": false,
      "health_percentage": 37,
      "has_issue_template": false,
      "has_code_of_conduct": false,
      "has_pull_request_template": false
    },
    "ecosystem": {
      "packages": [
        {
          "name": "github.com/evolbioinfo/gotree",
          "exists": true,
          "license": null,
          "keywords": [],
          "ecosystem": "go",
          "matches_repo": true,
          "registry_url": "https://pkg.go.dev/github.com/evolbioinfo/gotree",
          "is_deprecated": false,
          "latest_version": "v0.5.2",
          "repository_url": "https://github.com/evolbioinfo/gotree",
          "versions_count": 40,
          "total_downloads": null,
          "dependents_count": null,
          "deprecation_note": null,
          "maintainers_count": null,
          "monthly_downloads": null,
          "first_published_at": null,
          "latest_published_at": "2026-06-30T07:47:09Z",
          "latest_version_yanked": null,
          "days_since_latest_publish": 22
        }
      ]
    },
    "popularity": {
      "forks": 19,
      "stars": 150,
      "watchers": 11,
      "fork_history": {
        "days": [
          {
            "date": "2018-12-10",
            "count": 1
          },
          {
            "date": "2018-12-16",
            "count": 1
          },
          {
            "date": "2019-04-04",
            "count": 1
          },
          {
            "date": "2020-04-07",
            "count": 1
          },
          {
            "date": "2021-01-27",
            "count": 2
          },
          {
            "date": "2021-03-08",
            "count": 1
          },
          {
            "date": "2021-10-28",
            "count": 1
          },
          {
            "date": "2021-12-03",
            "count": 1
          },
          {
            "date": "2022-04-28",
            "count": 1
          },
          {
            "date": "2022-05-24",
            "count": 1
          },
          {
            "date": "2022-05-26",
            "count": 1
          },
          {
            "date": "2022-12-05",
            "count": 1
          },
          {
            "date": "2023-09-26",
            "count": 1
          },
          {
            "date": "2024-04-29",
            "count": 1
          },
          {
            "date": "2024-11-05",
            "count": 1
          },
          {
            "date": "2026-04-14",
            "count": 1
          },
          {
            "date": "2026-04-22",
            "count": 1
          },
          {
            "date": "2026-06-30",
            "count": 1
          }
        ],
        "complete": true,
        "collected": 19,
        "total_forks": 19
      },
      "star_history": null,
      "open_issues_and_prs": 2
    },
    "ai_readiness": {
      "has_nix": false,
      "example_dirs": [],
      "has_llms_txt": false,
      "has_dockerfile": false,
      "has_mcp_signal": false,
      "bootstrap_files": [
        "Makefile"
      ],
      "api_schema_files": [],
      "has_devcontainer": false,
      "typecheck_configs": [],
      "toolchain_manifests": [
        "go.mod"
      ],
      "largest_source_bytes": 61630,
      "source_files_sampled": 180,
      "oversized_source_files": 1,
      "agent_instruction_files": [],
      "agent_instruction_max_bytes": null
    },
    "dependencies": {
      "manifests": [
        "go.mod"
      ],
      "advisories": {
        "error": null,
        "scope": "repository_graph",
        "source": "osv",
        "findings": [
          {
            "name": "golang.org/x/image",
            "direct": true,
            "version": "v0.11.0",
            "severity": "high",
            "ecosystem": "go",
            "cvss_score": 7.5,
            "advisory_ids": [
              "GHSA-44p7-9xx4-hf2g",
              "GHSA-9phm-fm57-rhg8",
              "GHSA-q675-qj96-32m9",
              "GO-2024-2937",
              "GO-2026-4815",
              "GO-2026-4961",
              "GO-2026-4962",
              "GO-2026-5031",
              "GO-2026-5032",
              "GO-2026-5061"
            ],
            "fixed_version": "0.43.0",
            "advisory_count": 12,
            "oldest_advisory_days": 756
          },
          {
            "name": "github.com/ulikunitz/xz",
            "direct": false,
            "version": "v0.5.10",
            "severity": "moderate",
            "ecosystem": "go",
            "cvss_score": 5.3,
            "advisory_ids": [
              "GHSA-jc7w-c686-c4v9",
              "GO-2025-3922"
            ],
            "fixed_version": "0.5.15",
            "advisory_count": 2,
            "oldest_advisory_days": 327
          },
          {
            "name": "golang.org/x/sys",
            "direct": false,
            "version": "v0.11.0",
            "severity": "unknown",
            "ecosystem": "go",
            "cvss_score": null,
            "advisory_ids": [
              "GO-2026-5024"
            ],
            "fixed_version": "0.44.0",
            "advisory_count": 1,
            "oldest_advisory_days": 60
          },
          {
            "name": "golang.org/x/text",
            "direct": false,
            "version": "v0.12.0",
            "severity": "unknown",
            "ecosystem": "go",
            "cvss_score": null,
            "advisory_ids": [
              "GO-2026-5970"
            ],
            "fixed_version": "0.39.0",
            "advisory_count": 1,
            "oldest_advisory_days": 7
          }
        ],
        "collected": true,
        "malicious": [],
        "truncated": false,
        "by_severity": {
          "high": 1,
          "unknown": 2,
          "moderate": 1
        },
        "advisory_count": 16,
        "affected_count": 4,
        "assessed_count": 39,
        "malicious_count": 0,
        "assessed_package": null,
        "unassessed_count": 0,
        "direct_affected_count": 1
      },
      "ecosystems": [
        "go"
      ],
      "dependencies": [
        {
          "name": "github.com/ajstarks/svgo",
          "manifest": "go.mod",
          "ecosystem": "go",
          "version_constraint": "v0.0.0-20211024235047-1546f124cd8b"
        },
        {
          "name": "github.com/evolbioinfo/goalign",
          "manifest": "go.mod",
          "ecosystem": "go",
          "version_constraint": "v0.3.7-0.20230906113011-fcecb09f9d43"
        },
        {
          "name": "github.com/fredericlemoine/bitset",
          "manifest": "go.mod",
          "ecosystem": "go",
          "version_constraint": "v1.2.0"
        },
        {
          "name": "github.com/fredericlemoine/cobrashell",
          "manifest": "go.mod",
          "ecosystem": "go",
          "version_constraint": "v0.0.0-20180921081141-49c72f93426c"
        },
        {
          "name": "github.com/fredericlemoine/gostats",
          "manifest": "go.mod",
          "ecosystem": "go",
          "version_constraint": "v0.2.0"
        },
        {
          "name": "github.com/golang/freetype",
          "manifest": "go.mod",
          "ecosystem": "go",
          "version_constraint": "v0.0.0-20170609003504-e2365dfdc4a0"
        },
        {
          "name": "github.com/jlaffaye/ftp",
          "manifest": "go.mod",
          "ecosystem": "go",
          "version_constraint": "v0.0.0-20210307004419-5d4190119067"
        },
        {
          "name": "github.com/llgcode/draw2d",
          "manifest": "go.mod",
          "ecosystem": "go",
          "version_constraint": "v0.0.0-20210313082411-577c1ead272a"
        },
        {
          "name": "github.com/spf13/cobra",
          "manifest": "go.mod",
          "ecosystem": "go",
          "version_constraint": "v1.5.0"
        },
        {
          "name": "golang.org/x/image",
          "manifest": "go.mod",
          "ecosystem": "go",
          "version_constraint": "v0.11.0"
        },
        {
          "name": "gonum.org/v1/plot",
          "manifest": "go.mod",
          "ecosystem": "go",
          "version_constraint": "v0.14.0"
        }
      ],
      "all_dependencies": {
        "error": null,
        "source": "github-sbom",
        "packages": [
          {
            "name": "github.com/ajstarks/svgo",
            "direct": true,
            "version": "v0.0.0-20211024235047-1546f124cd8b",
            "ecosystem": "go"
          },
          {
            "name": "github.com/evolbioinfo/goalign",
            "direct": true,
            "version": "v0.3.7-0.20230906113011-fcecb09f9d43",
            "ecosystem": "go"
          },
          {
            "name": "github.com/fredericlemoine/bitset",
            "direct": true,
            "version": "v1.2.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/fredericlemoine/cobrashell",
            "direct": true,
            "version": "v0.0.0-20180921081141-49c72f93426c",
            "ecosystem": "go"
          },
          {
            "name": "github.com/fredericlemoine/gostats",
            "direct": true,
            "version": "v0.2.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/golang/freetype",
            "direct": true,
            "version": "v0.0.0-20170609003504-e2365dfdc4a0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/jlaffaye/ftp",
            "direct": true,
            "version": "v0.0.0-20210307004419-5d4190119067",
            "ecosystem": "go"
          },
          {
            "name": "github.com/llgcode/draw2d",
            "direct": true,
            "version": "v0.0.0-20210313082411-577c1ead272a",
            "ecosystem": "go"
          },
          {
            "name": "github.com/spf13/cobra",
            "direct": true,
            "version": "v1.5.0",
            "ecosystem": "go"
          },
          {
            "name": "golang.org/x/image",
            "direct": true,
            "version": "v0.11.0",
            "ecosystem": "go"
          },
          {
            "name": "gonum.org/v1/plot",
            "direct": true,
            "version": "v0.14.0",
            "ecosystem": "go"
          },
          {
            "name": "gioui.org",
            "direct": false,
            "version": "v0.2.0",
            "ecosystem": "go"
          },
          {
            "name": "gioui.org/cpu",
            "direct": false,
            "version": "v0.0.0-20220412190645-f1e9e8c3b1f7",
            "ecosystem": "go"
          },
          {
            "name": "gioui.org/shader",
            "direct": false,
            "version": "v1.0.6",
            "ecosystem": "go"
          },
          {
            "name": "gioui.org/x",
            "direct": false,
            "version": "v0.2.0",
            "ecosystem": "go"
          },
          {
            "name": "git.sr.ht/~sbinet/gg",
            "direct": false,
            "version": "v0.5.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/abiosoft/ishell",
            "direct": false,
            "version": "v2.0.0+incompatible",
            "ecosystem": "go"
          },
          {
            "name": "github.com/abiosoft/readline",
            "direct": false,
            "version": "v0.0.0-20180607040430-155bce2042db",
            "ecosystem": "go"
          },
          {
            "name": "github.com/andybalholm/stroke",
            "direct": false,
            "version": "v0.0.0-20221221101821-bd29b49d73f0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/armon/go-radix",
            "direct": false,
            "version": "v1.0.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/campoy/embedmd",
            "direct": false,
            "version": "v1.0.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/fatih/color",
            "direct": false,
            "version": "v1.10.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/flynn-archive/go-shlex",
            "direct": false,
            "version": "v0.0.0-20150515145356-3f9db97f8568",
            "ecosystem": "go"
          },
          {
            "name": "github.com/go-fonts/liberation",
            "direct": false,
            "version": "v0.3.1",
            "ecosystem": "go"
          },
          {
            "name": "github.com/go-latex/latex",
            "direct": false,
            "version": "v0.0.0-20230307184459-12ec69307ad9",
            "ecosystem": "go"
          },
          {
            "name": "github.com/go-pdf/fpdf",
            "direct": false,
            "version": "v0.8.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/go-text/typesetting",
            "direct": false,
            "version": "v0.0.0-20230803102845-24e03d8b5372",
            "ecosystem": "go"
          },
          {
            "name": "github.com/inconshreveable/mousetrap",
            "direct": false,
            "version": "v1.0.1",
            "ecosystem": "go"
          },
          {
            "name": "github.com/mattn/go-colorable",
            "direct": false,
            "version": "v0.1.8",
            "ecosystem": "go"
          },
          {
            "name": "github.com/mattn/go-isatty",
            "direct": false,
            "version": "v0.0.12",
            "ecosystem": "go"
          },
          {
            "name": "github.com/pmezard/go-difflib",
            "direct": false,
            "version": "v1.0.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/spf13/pflag",
            "direct": false,
            "version": "v1.0.5",
            "ecosystem": "go"
          },
          {
            "name": "github.com/ulikunitz/xz",
            "direct": false,
            "version": "v0.5.10",
            "ecosystem": "go"
          },
          {
            "name": "golang.org/x/exp",
            "direct": false,
            "version": "v0.0.0-20230801115018-d63ba01acd4b",
            "ecosystem": "go"
          },
          {
            "name": "golang.org/x/exp/shiny",
            "direct": false,
            "version": "v0.0.0-20230801115018-d63ba01acd4b",
            "ecosystem": "go"
          },
          {
            "name": "golang.org/x/sys",
            "direct": false,
            "version": "v0.11.0",
            "ecosystem": "go"
          },
          {
            "name": "golang.org/x/text",
            "direct": false,
            "version": "v0.12.0",
            "ecosystem": "go"
          },
          {
            "name": "gonum.org/v1/gonum",
            "direct": false,
            "version": "v0.14.0",
            "ecosystem": "go"
          },
          {
            "name": "rsc.io/pdf",
            "direct": false,
            "version": "v0.1.1",
            "ecosystem": "go"
          }
        ],
        "collected": true,
        "truncated": false,
        "total_count": 39,
        "direct_count": 11,
        "indirect_count": 28
      }
    },
    "maintainership": {
      "issues": {
        "open_prs": 0,
        "merged_prs": 9,
        "open_issues": 2,
        "closed_ratio": 0.905,
        "closed_issues": 19,
        "closed_unmerged_prs": 0
      },
      "bus_factor": 1,
      "bot_contributors": 1,
      "top_contributors": [
        {
          "type": "User",
          "login": "fredericlemoine",
          "commits": 818,
          "avatar_url": "https://avatars.githubusercontent.com/u/16349382?v=4"
        },
        {
          "type": "User",
          "login": "lucblassel",
          "commits": 9,
          "avatar_url": "https://avatars.githubusercontent.com/u/30524113?v=4"
        },
        {
          "type": "User",
          "login": "albertyw",
          "commits": 1,
          "avatar_url": "https://avatars.githubusercontent.com/u/3151040?v=4"
        },
        {
          "type": "User",
          "login": "krtab",
          "commits": 1,
          "avatar_url": "https://avatars.githubusercontent.com/u/53921575?v=4"
        },
        {
          "type": "User",
          "login": "Jah-yee",
          "commits": 1,
          "avatar_url": "https://avatars.githubusercontent.com/u/166608075?v=4"
        }
      ],
      "contributors_sampled": 5,
      "top_contributor_share": 0.986
    },
    "quality_signals": {
      "has_ci": true,
      "has_tests": true,
      "ci_workflows": [
        "go.yml"
      ],
      "has_docs_dir": true,
      "linter_configs": [],
      "has_editorconfig": false,
      "has_linter_config": false,
      "has_precommit_config": false
    },
    "security_signals": {
      "lockfiles": [
        "go.sum"
      ],
      "scorecard": {
        "checks": [
          {
            "name": "Binary-Artifacts",
            "score": 10,
            "reason": "no binaries found in the repo",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
          },
          {
            "name": "Branch-Protection",
            "score": null,
            "reason": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
          },
          {
            "name": "CI-Tests",
            "score": 10,
            "reason": "3 out of 3 merged PRs checked by a CI test -- score normalized to 10",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
          },
          {
            "name": "CII-Best-Practices",
            "score": 0,
            "reason": "no effort to earn an OpenSSF best practices badge detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
          },
          {
            "name": "Code-Review",
            "score": 0,
            "reason": "Found 1/19 approved changesets -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
          },
          {
            "name": "Contributors",
            "score": 6,
            "reason": "project has 2 contributing companies or organizations -- score normalized to 6",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
          },
          {
            "name": "Dangerous-Workflow",
            "score": 10,
            "reason": "no dangerous workflow patterns detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
          },
          {
            "name": "Dependency-Update-Tool",
            "score": 0,
            "reason": "no update tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
          },
          {
            "name": "Fuzzing",
            "score": 0,
            "reason": "project is not fuzzed",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
          },
          {
            "name": "License",
            "score": 10,
            "reason": "license file detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
          },
          {
            "name": "Maintained",
            "score": 5,
            "reason": "6 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 5",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
          },
          {
            "name": "Packaging",
            "score": null,
            "reason": "packaging workflow not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
          },
          {
            "name": "Pinned-Dependencies",
            "score": 0,
            "reason": "dependency not pinned by hash detected -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
          },
          {
            "name": "SAST",
            "score": 0,
            "reason": "SAST tool is not run on all commits -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
          },
          {
            "name": "Security-Policy",
            "score": 0,
            "reason": "security policy file not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
          },
          {
            "name": "Signed-Releases",
            "score": 0,
            "reason": "Project has not signed or included provenance with any releases.",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
          },
          {
            "name": "Token-Permissions",
            "score": 0,
            "reason": "detected GitHub workflow tokens with excessive permissions",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
          },
          {
            "name": "Vulnerabilities",
            "score": 0,
            "reason": "12 existing vulnerabilities detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
          }
        ],
        "commit": "8ce3ce6eb5b14261b0be7ed2b1b02bcf22dfc305",
        "ran_at": "2026-07-22T15:26:42Z",
        "aggregate_score": 3,
        "scorecard_version": "v5.5.0"
      },
      "has_codeql_workflow": false,
      "has_security_policy": false,
      "has_dependabot_config": false
    },
    "contribution_flow": {
      "collected": true,
      "ci_last_run_at": "2026-07-03T15:23:46Z",
      "oldest_open_prs": [],
      "last_merged_pr_at": "2026-06-30T07:23:04Z",
      "ci_last_conclusion": "SUCCESS",
      "oldest_open_issues": [
        {
          "number": 18,
          "created_at": "2022-03-14T03:00:34Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 25,
          "created_at": "2024-05-30T13:12:15Z",
          "last_comment_at": null,
          "last_comment_author": null
        }
      ]
    }
  },
  "config": {
    "disabled_metrics": [],
    "disabled_categories": [],
    "disabled_components": {}
  },
  "source": {
    "url": "https://github.com/evolbioinfo/gotree",
    "host": "github.com",
    "name": "gotree",
    "owner": "evolbioinfo"
  },
  "metrics": {
    "overall": {
      "key": "overall",
      "band": "moderate",
      "name": "Overall health",
      "note": null,
      "notes": [],
      "value": 61,
      "inputs": {
        "security": 37,
        "vitality": 68,
        "community": 51,
        "governance": 63,
        "engineering": 81
      },
      "components": []
    },
    "categories": [
      {
        "key": "vitality",
        "band": "moderate",
        "name": "Vitality",
        "value": 68,
        "weight": 0.22,
        "metrics": [
          {
            "key": "development_activity",
            "band": "moderate",
            "name": "Development activity",
            "note": null,
            "notes": [],
            "value": 62,
            "inputs": {
              "commits_last_year": 36,
              "human_commit_share": 0.95,
              "days_since_last_push": 7,
              "active_weeks_last_year": 10
            },
            "components": [
              {
                "key": "push_recency",
                "name": "Push recency",
                "detail": "last push 7 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "push_recency",
                    "params": {
                      "days": 7
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_cadence",
                "name": "Commit cadence",
                "detail": "10/52 weeks with commits",
                "points": 6.9,
                "status": "partial",
                "details": [
                  {
                    "code": "commit_cadence_weeks",
                    "params": {
                      "weeks": 10
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_volume",
                "name": "Commit volume",
                "detail": "36 commits in the last year",
                "points": 14.1,
                "status": "partial",
                "details": [
                  {
                    "code": "commits_last_year",
                    "params": {
                      "count": 36
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "openssf_scorecard_maintained",
                "name": "OpenSSF Scorecard: Maintained",
                "detail": "6 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 5",
                "points": 5,
                "status": "partial",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "release_discipline",
            "band": "good",
            "name": "Release discipline",
            "note": null,
            "notes": [],
            "value": 76,
            "inputs": {
              "releases_count": 53,
              "latest_release_tag": "v0.5.2",
              "releases_from_tags": false,
              "days_since_latest_release": 6,
              "mean_days_between_releases": 217
            },
            "components": [
              {
                "key": "ships_releases",
                "name": "Ships releases",
                "detail": "53 releases published",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "releases_published",
                    "params": {
                      "count": 53
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "release_recency",
                "name": "Release recency",
                "detail": "latest release 6 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "release_recency",
                    "params": {
                      "days": 6
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "release_cadence",
                "name": "Release cadence",
                "detail": "a release every ~217 days",
                "points": 12.6,
                "status": "partial",
                "details": [
                  {
                    "code": "release_cadence",
                    "params": {
                      "gap": 217
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "openssf_scorecard_signed_releases",
                "name": "OpenSSF Scorecard: Signed-Releases",
                "detail": "Project has not signed or included provenance with any releases.",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "abandonment",
            "band": "excellent",
            "name": "Abandonment",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "cap": null,
              "state": "maintained",
              "guards": [],
              "signals": [],
              "red_flag": false,
              "multiplier_pct": 100,
              "declared_reason": null,
              "unverified_reason": null,
              "unanswered_open_prs": null,
              "unanswered_open_issues": null,
              "days_since_last_merged_pr": null,
              "days_since_last_human_commit": 22,
              "days_since_last_human_commit_is_floor": false
            },
            "components": [
              {
                "key": "project_is_still_maintained",
                "name": "Project is still maintained",
                "detail": "last human commit 22 days ago",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "abandonment_maintained",
                    "params": {
                      "days": 22
                    }
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Is the project alive — is code being written and are releases shipping?"
      },
      {
        "key": "community",
        "band": "moderate",
        "name": "Community & Adoption",
        "value": 51,
        "weight": 0.18,
        "metrics": [
          {
            "key": "popularity",
            "band": "moderate",
            "name": "Popularity & adoption",
            "note": null,
            "notes": [],
            "value": 51,
            "inputs": {
              "forks": 19,
              "stars": 150,
              "watchers": 11,
              "growth_state": "unverified",
              "growth_factor_pct": 100,
              "growth_unverified_reason": "no_history"
            },
            "components": [
              {
                "key": "stars",
                "name": "Stars",
                "detail": "150 stars",
                "points": 35.3,
                "status": "partial",
                "details": [
                  {
                    "code": "stars",
                    "params": {
                      "count": 150
                    }
                  }
                ],
                "max_points": 60
              },
              {
                "key": "forks",
                "name": "Forks",
                "detail": "19 forks",
                "points": 10.5,
                "status": "partial",
                "details": [
                  {
                    "code": "forks",
                    "params": {
                      "count": 19
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "watchers",
                "name": "Watchers",
                "detail": "11 watchers",
                "points": 5.6,
                "status": "partial",
                "details": [
                  {
                    "code": "watchers",
                    "params": {
                      "count": 11
                    }
                  }
                ],
                "max_points": 15
              }
            ]
          },
          {
            "key": "community_health",
            "band": "moderate",
            "name": "Community health",
            "note": null,
            "notes": [],
            "value": 50,
            "inputs": {
              "has_readme": true,
              "has_license": true,
              "has_contributing": false,
              "has_issue_template": false,
              "has_code_of_conduct": false,
              "has_pull_request_template": false
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 22.5,
                "status": "met",
                "details": [],
                "max_points": 22.5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "recognized license (GPL-2.0)",
                "points": 22.5,
                "status": "met",
                "details": [
                  {
                    "code": "license_standard",
                    "params": {}
                  },
                  {
                    "code": "license_spdx",
                    "params": {
                      "spdx": "GPL-2.0"
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributing_guide",
                "name": "CONTRIBUTING guide",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 18
              },
              {
                "key": "code_of_conduct",
                "name": "Code of conduct",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 13.5
              },
              {
                "key": "issue_template",
                "name": "Issue template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.2
              },
              {
                "key": "pr_template",
                "name": "PR template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.3
              }
            ]
          }
        ],
        "description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
      },
      {
        "key": "governance",
        "band": "moderate",
        "name": "Sustainability & Governance",
        "value": 63,
        "weight": 0.24,
        "metrics": [
          {
            "key": "maintainer_resilience",
            "band": "critical",
            "name": "Maintainer resilience (bus factor)",
            "note": null,
            "notes": [],
            "value": 22,
            "inputs": {
              "bus_factor": 1,
              "contributors_sampled": 5,
              "top_contributor_share": 0.986
            },
            "components": [
              {
                "key": "bus_factor",
                "name": "Bus factor",
                "detail": "1 contributor(s) cover half of all commits",
                "points": 9,
                "status": "partial",
                "details": [
                  {
                    "code": "bus_factor",
                    "params": {
                      "count": 1
                    }
                  }
                ],
                "max_points": 54
              },
              {
                "key": "commit_distribution",
                "name": "Commit distribution",
                "detail": "top contributor authored 99% of commits",
                "points": 0.3,
                "status": "partial",
                "details": [
                  {
                    "code": "top_contributor_share",
                    "params": {
                      "share": 99
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributor_breadth",
                "name": "Contributor breadth",
                "detail": "5 contributors",
                "points": 6.8,
                "status": "partial",
                "details": [
                  {
                    "code": "contributors_sampled",
                    "params": {
                      "count": 5
                    }
                  }
                ],
                "max_points": 13.5
              },
              {
                "key": "openssf_scorecard_contributors",
                "name": "OpenSSF Scorecard: Contributors",
                "detail": "project has 2 contributing companies or organizations -- score normalized to 6",
                "points": 6,
                "status": "partial",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "responsiveness",
            "band": "good",
            "name": "Issue & PR responsiveness",
            "note": null,
            "notes": [],
            "value": 80,
            "inputs": {
              "merged_prs": 9,
              "open_issues": 2,
              "closed_issues": 19,
              "issue_closed_ratio": 0.905,
              "closed_unmerged_prs": 0
            },
            "components": [
              {
                "key": "issue_resolution",
                "name": "Issue resolution",
                "detail": "90% of issues closed",
                "points": 42.3,
                "status": "partial",
                "details": [
                  {
                    "code": "issues_closed_share",
                    "params": {
                      "share": 90
                    }
                  }
                ],
                "max_points": 46.75
              },
              {
                "key": "pr_acceptance",
                "name": "PR acceptance",
                "detail": "9/9 decided PRs merged",
                "points": 38.2,
                "status": "met",
                "details": [
                  {
                    "code": "decided_prs_merged",
                    "params": {
                      "merged": 9,
                      "decided": 9
                    }
                  }
                ],
                "max_points": 38.25
              },
              {
                "key": "openssf_scorecard_code_review",
                "name": "OpenSSF Scorecard: Code-Review",
                "detail": "Found 1/19 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              }
            ]
          },
          {
            "key": "stewardship",
            "band": "moderate",
            "name": "Ownership & stewardship",
            "note": null,
            "notes": [],
            "value": 65,
            "inputs": {
              "followers": 50,
              "owner_type": "Organization",
              "is_verified": null,
              "owner_login": "evolbioinfo",
              "public_repos": 30,
              "account_age_days": 3437
            },
            "components": [
              {
                "key": "ownership_backing",
                "name": "Ownership backing",
                "detail": "organization-owned",
                "points": 30,
                "status": "met",
                "details": [
                  {
                    "code": "owner_organization",
                    "params": {}
                  }
                ],
                "max_points": 30
              },
              {
                "key": "verified_domain",
                "name": "Verified domain",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "owner_reach",
                "name": "Owner reach",
                "detail": "50 followers of evolbioinfo",
                "points": 12.3,
                "status": "partial",
                "details": [
                  {
                    "code": "owner_followers",
                    "params": {
                      "count": 50,
                      "login": "evolbioinfo"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "track_record",
                "name": "Track record",
                "detail": "30 public repos, account ~9 yr old",
                "points": 22.9,
                "status": "partial",
                "details": [
                  {
                    "code": "public_repos",
                    "params": {
                      "count": 30
                    }
                  },
                  {
                    "code": "account_age_years",
                    "params": {
                      "years": 9
                    }
                  }
                ],
                "max_points": 25
              }
            ]
          },
          {
            "key": "package_maintenance",
            "band": "excellent",
            "name": "Package maintenance",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "packages": [
                "github.com/evolbioinfo/gotree"
              ],
              "ecosystems": "go",
              "any_deprecated": false,
              "min_days_since_publish": 22
            },
            "components": [
              {
                "key": "published_resolvable",
                "name": "Published & resolvable",
                "detail": "1 package(s) on go",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "packages_published",
                    "params": {
                      "count": 1,
                      "ecosystems": "go"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "publish_recency",
                "name": "Publish recency",
                "detail": "latest publish 22 days ago",
                "points": 35,
                "status": "met",
                "details": [
                  {
                    "code": "publish_recency",
                    "params": {
                      "days": 22
                    }
                  }
                ],
                "max_points": 35
              },
              {
                "key": "version_history",
                "name": "Version history",
                "detail": "40 published versions",
                "points": 20,
                "status": "met",
                "details": [
                  {
                    "code": "published_versions",
                    "params": {
                      "count": 40
                    }
                  }
                ],
                "max_points": 20
              },
              {
                "key": "not_deprecated",
                "name": "Not deprecated",
                "detail": "active, not deprecated or yanked",
                "points": 20,
                "status": "met",
                "details": [
                  {
                    "code": "package_not_deprecated",
                    "params": {}
                  }
                ],
                "max_points": 20
              }
            ]
          }
        ],
        "description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
      },
      {
        "key": "engineering",
        "band": "good",
        "name": "Engineering Quality",
        "value": 81,
        "weight": 0.2,
        "metrics": [
          {
            "key": "engineering_practices",
            "band": "moderate",
            "name": "Engineering practices",
            "note": null,
            "notes": [],
            "value": 68,
            "inputs": {
              "has_ci": true,
              "has_tests": true,
              "has_editorconfig": false,
              "has_linter_config": false,
              "has_precommit_config": false
            },
            "components": [
              {
                "key": "ci_workflows",
                "name": "CI workflows",
                "detail": "1 workflow(s)",
                "points": 24,
                "status": "met",
                "details": [
                  {
                    "code": "ci_workflows",
                    "params": {
                      "count": 1
                    }
                  }
                ],
                "max_points": 24
              },
              {
                "key": "tests_present",
                "name": "Tests present",
                "detail": null,
                "points": 24,
                "status": "met",
                "details": [],
                "max_points": 24
              },
              {
                "key": "linter_config",
                "name": "Linter config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 16
              },
              {
                "key": "pre_commit_hooks",
                "name": "Pre-commit hooks",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 9.6
              },
              {
                "key": "editorconfig",
                "name": ".editorconfig",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.4
              },
              {
                "key": "openssf_scorecard_ci_tests",
                "name": "OpenSSF Scorecard: CI-Tests",
                "detail": "3 out of 3 merged PRs checked by a CI test -- score normalized to 10",
                "points": 20,
                "status": "met",
                "details": [],
                "max_points": 20
              }
            ]
          },
          {
            "key": "documentation",
            "band": "excellent",
            "name": "Documentation",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "topics": [
                "phylogeny",
                "newick",
                "tree",
                "tree-structure",
                "itol",
                "gotree",
                "nexus"
              ],
              "has_wiki": true,
              "homepage": "https://research.pasteur.fr/en/software/goalign-gotree/",
              "has_readme": true,
              "has_docs_dir": true,
              "has_description": true
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 30,
                "status": "met",
                "details": [],
                "max_points": 30
              },
              {
                "key": "documentation_directory",
                "name": "Documentation directory",
                "detail": null,
                "points": 25,
                "status": "met",
                "details": [],
                "max_points": 25
              },
              {
                "key": "documentation_homepage_site",
                "name": "Documentation / homepage site",
                "detail": "https://research.pasteur.fr/en/software/goalign-gotree/",
                "points": 15,
                "status": "met",
                "details": [],
                "max_points": 15
              },
              {
                "key": "repository_description",
                "name": "Repository description",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "topics",
                "name": "Topics",
                "detail": "7 topics",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "topics_count",
                    "params": {
                      "count": 7
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "wiki",
                "name": "Wiki",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
      },
      {
        "key": "security",
        "band": "at_risk",
        "name": "Security",
        "value": 37,
        "weight": 0.16,
        "metrics": [
          {
            "key": "security_posture",
            "band": "at_risk",
            "name": "Security posture",
            "note": "Excluded from scoring (no data or not applicable): Branch-Protection, Packaging. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "branch_protection",
                    "packaging"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 30,
            "inputs": {
              "source": "openssf_scorecard",
              "checks_evaluated": 16,
              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 2,
              "scorecard_aggregate": 3
            },
            "components": [
              {
                "key": "binary_artifacts",
                "name": "Binary-Artifacts",
                "detail": "no binaries found in the repo",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "ci_tests",
                "name": "CI-Tests",
                "detail": "3 out of 3 merged PRs checked by a CI test -- score normalized to 10",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "code_review",
                "name": "Code-Review",
                "detail": "Found 1/19 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 2 contributing companies or organizations -- score normalized to 6",
                "points": 1.5,
                "status": "partial",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no dangerous workflow patterns detected",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "no update tool detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "6 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 5",
                "points": 3.8,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow not detected",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
                "detail": "SAST tool is not run on all commits -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "security_policy",
                "name": "Security-Policy",
                "detail": "security policy file not detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "signed_releases",
                "name": "Signed-Releases",
                "detail": "Project has not signed or included provenance with any releases.",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "detected GitHub workflow tokens with excessive permissions",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "12 existing vulnerabilities detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              }
            ]
          },
          {
            "key": "dependency_advisories",
            "band": "moderate",
            "name": "Dependency advisories",
            "note": "Excluded from scoring (no data or not applicable): Indirect dependencies free of known advisories. Remaining weights renormalized. Matched 39 resolved dependencies against OSV. This repository publishes no package the index resolves, so the repository dependency graph was assessed instead. That graph mixes development and test pins with shipped dependencies, so only the declared runtime dependencies are scored; transitive findings are reported as context and excluded from the score. Reachability is not analyzed.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "indirect_dependencies_free_of_known_advisories"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              },
              {
                "code": "advisories_scope_repository",
                "params": {
                  "assessed": 39
                }
              },
              {
                "code": "advisories_repo_graph_caveat",
                "params": {}
              },
              {
                "code": "advisories_reachability",
                "params": {}
              }
            ],
            "value": 64,
            "inputs": {
              "source": "osv",
              "advisories": 16,
              "affected_packages": 4,
              "assessed_packages": 39,
              "unassessed_packages": 0,
              "affected_by_severity": "high 1, moderate 1, unknown 2",
              "direct_affected_packages": 1
            },
            "components": [
              {
                "key": "direct_dependencies_free_of_known_advisories",
                "name": "Direct dependencies free of known advisories",
                "detail": "1 affected: golang.org/x/image v0.11.0 (high 7.5)",
                "points": 14,
                "status": "partial",
                "details": [
                  {
                    "code": "advisories_affected",
                    "params": {
                      "count": 1,
                      "packages": "golang.org/x/image v0.11.0 (high 7.5)"
                    }
                  }
                ],
                "max_points": 35
              },
              {
                "key": "indirect_dependencies_free_of_known_advisories",
                "name": "Indirect dependencies free of known advisories",
                "detail": "transitive set not separable from development and test dependencies in this scope",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "advisories_scope_not_separable",
                    "params": {}
                  }
                ],
                "max_points": 25
              },
              {
                "key": "no_advisories_left_outstanding",
                "name": "No advisories left outstanding",
                "detail": "1 advisory-carrying package(s) unaddressed past 90 days; oldest published 756 days ago",
                "points": 33.7,
                "status": "partial",
                "details": [
                  {
                    "code": "advisories_stale",
                    "params": {
                      "days": 90,
                      "count": 1,
                      "oldest": 756
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "malicious_dependencies",
            "band": "excellent",
            "name": "Malicious dependencies",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "source": "osv",
              "meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
              "packages": [],
              "red_flag": false,
              "assessed_packages": 39,
              "malicious_packages": 0,
              "direct_malicious_packages": 0,
              "withdrawn_malicious_packages": 0,
              "installable_malicious_packages": 0
            },
            "components": [
              {
                "key": "no_dependency_reported_as_a_malicious_package",
                "name": "No dependency reported as a malicious package",
                "detail": "no dependency is reported as a malicious package",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "no_malicious_dependencies",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          },
          {
            "key": "high_risk_jurisdiction_exposure",
            "band": "excellent",
            "name": "High-Risk Jurisdiction Exposure",
            "note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
            "notes": [
              {
                "code": "jurisdiction_evidence_limits",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "meaning": "self-published location evidence; not nationality or citizenship",
              "red_flag": false,
              "exposures": [],
              "policy_countries": [
                "Russia",
                "Iran",
                "North Korea"
              ],
              "review_only_matches": 0,
              "assessed_self_published_locations": 17
            },
            "components": [
              {
                "key": "policy_exposure_multiplier",
                "name": "Policy exposure multiplier",
                "detail": "no confirmed policy-scope location match",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "jurisdiction_no_match",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "at_risk",
        "name": "AI Readiness",
        "value": 48,
        "weight": 0,
        "metrics": [
          {
            "key": "ai_agent_context",
            "band": "critical",
            "name": "Agent context & guidance",
            "note": null,
            "notes": [],
            "value": 6,
            "inputs": {
              "has_llms_txt": false,
              "legible_history_share": 0.105,
              "agent_instruction_files": [],
              "agent_instruction_max_bytes": null
            },
            "components": [
              {
                "key": "agent_instructions",
                "name": "Agent instructions",
                "detail": "no CLAUDE.md / AGENTS.md / editor rules",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_instructions",
                    "params": {}
                  }
                ],
                "max_points": 45
              },
              {
                "key": "machine_readable_docs_llms_txt",
                "name": "Machine-readable docs (llms.txt)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "legible_commit_history",
                "name": "Legible commit history",
                "detail": "10 of 95 human commits state their intent (structured subject or explanatory body)",
                "points": 5.6,
                "status": "partial",
                "details": [
                  {
                    "code": "legible_history",
                    "params": {
                      "legible": 10,
                      "sampled": 95
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "ai_verify_loop",
            "band": "moderate",
            "name": "Verify loop (build / test / typecheck)",
            "note": null,
            "notes": [],
            "value": 61,
            "inputs": {
              "has_nix": false,
              "has_tests": true,
              "lockfiles": [
                "go.sum"
              ],
              "has_dockerfile": false,
              "typed_language": true,
              "bootstrap_files": [
                "Makefile"
              ],
              "has_devcontainer": false,
              "has_linter_config": false,
              "typecheck_configs": [],
              "agent_commit_share": 0,
              "toolchain_manifests": [
                "go.mod"
              ],
              "dependency_bot_commit_share": 0
            },
            "components": [
              {
                "key": "one_command_bootstrap",
                "name": "One-command bootstrap",
                "detail": "Makefile",
                "points": 18,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "Makefile"
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "automated_tests",
                "name": "Automated tests",
                "detail": null,
                "points": 22,
                "status": "met",
                "details": [],
                "max_points": 22
              },
              {
                "key": "lint_format_config",
                "name": "Lint / format config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
              },
              {
                "key": "static_type_checking",
                "name": "Static type checking",
                "detail": "Go (statically typed)",
                "points": 11,
                "status": "met",
                "details": [
                  {
                    "code": "statically_typed_language",
                    "params": {
                      "language": "Go"
                    }
                  }
                ],
                "max_points": 11
              },
              {
                "key": "reproducible_environment",
                "name": "Reproducible environment",
                "detail": "lockfile",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "lockfile"
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "demonstrated_agent_practice",
                "name": "Demonstrated agent practice",
                "detail": "no agent-authored commits among the last 100",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_authored_commits",
                    "params": {
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "automated_maintenance",
                "name": "Automated maintenance",
                "detail": "no automated dependency updates observed",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_dependency_automation",
                    "params": {}
                  }
                ],
                "max_points": 8
              },
              {
                "key": "openssf_scorecard_pinned_dependencies",
                "name": "OpenSSF Scorecard: Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "ai_code_legibility",
            "band": "excellent",
            "name": "Code legibility for models",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "primary_language": "Go",
              "largest_source_bytes": 61630,
              "source_files_sampled": 180,
              "oversized_source_files": 1
            },
            "components": [
              {
                "key": "type_checkable_code",
                "name": "Type-checkable code",
                "detail": "Go (statically typed)",
                "points": 45,
                "status": "met",
                "details": [
                  {
                    "code": "statically_typed_language",
                    "params": {
                      "language": "Go"
                    }
                  }
                ],
                "max_points": 45
              },
              {
                "key": "manageable_file_sizes",
                "name": "Manageable file sizes",
                "detail": "1/180 source files over 60KB",
                "points": 54.7,
                "status": "partial",
                "details": [
                  {
                    "code": "oversized_source_files",
                    "params": {
                      "kb": 60,
                      "sampled": 180,
                      "oversized": 1
                    }
                  }
                ],
                "max_points": 55
              }
            ]
          }
        ],
        "description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
      }
    ],
    "metrics_version": "1.13.0"
  },
  "warnings": [
    "Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token"
  ],
  "report_type": "repository",
  "generated_at": "2026-07-22T15:26:54.842317Z",
  "schema_version": "0.26.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/e/evolbioinfo/gotree.svg",
  "full_name": "evolbioinfo/gotree",
  "license_state": "standard",
  "license_spdx": "GPL-2.0"
}

评分是信号,而非担保。 评分反映的是 GitHub 上公开可见的实践——不是代码审计,也不是安全保证。

缺失数据将被剔除并重新归一化权重,绝不按零分计。方法论已版本化并公开:指标 v1.13.0、模式 v0.26.0—— 完整方法论 · 指标知识库.

单项结果在整体记录中的位置: 汇总统计Go.