#bioinformatics

Yet another version of PDBx/mmCIF Python implementation

Pure-Rust reader for Thermo Fisher .raw mass-spectrometry files, with Python bindings.

该仓库未发布描述。

The self-evolving agentic framework for bioinformatics

A dash wrapper of the javascript DNA, RNA and protein sequence viewer

Database for storing sample metadata

Open-source bioinformatics components for Dash

An agentic bioinformatics analyst: it runs the analysis on your own compute, self-heals failures, verifies the output, and returns a reproducible result.

A Julia package to read, write and manipulate macromolecular structures

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

Generate restraints to be used in HADDOCK

A Rust library for parsing PDB (Protein Data Bank) files

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

A crate for working with the Task Execution Service (TES) specification.

An agent that takes a dead research repo and turns it into a callable pipeline component.

Identifies relevant ligands in the PDB

A Go package for engineering organisms.

Biobb_common is the base package required to use the biobb packages.

JAX-native differentiable protein folding framework integrating experimental NMR constraints (RDCs) and biophysical "self-correction." Several Jupyter Notebooks visualize the concepts.

High-performance graph database + vector search powered by InterSystems IRIS

a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees

Working with molecular structures in pandas DataFrames

该仓库未发布描述。

Real-time VSCode extension and standalone Python script for validating mmCIF/CIF files against the PDBx/mmCIF dictionary or any CIF dictionary.

AI-ready biological data I/O, validation, and tokenization engine

Software for biomolecular electrostatics and solvation calculations

Generate realistic synthetic 3D Cryo-EM densities from structural models for testing algorithms and training ML models.

A fragment-based molecular assembly toolkit

IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.

MCP interface to BioPython