#bioinformatics

Mapping sequencing data to De Bruijn graphs, fast

An open-source Python package for accurate and sensitive peptide and protein quantification.

A Go package for engineering organisms.

Keine Repository-Beschreibung veröffentlicht.

The BridgeDb Library source code

Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

NGLess: NGS with less work

Database for storing sample metadata

SortMeRNA: next-generation sequence filtering and alignment tool

A Julia package to read, write and manipulate macromolecular structures

A dash wrapper of the javascript DNA, RNA and protein sequence viewer

The penultimate FastQ processor. Flexible Read Modification.

AI-ready biological data I/O, validation, and tokenization engine

BGZF compression library in Rust

Cancer genomics data from osteosarc.com

Open-source bioinformatics components for Dash

gene tree React component

Keine Repository-Beschreibung veröffentlicht.

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

Quality of life improvements in Rust.

Powerful long read aligner for Ruby

A repository that stores all the MCP servers for creating biological mechanistic models. It includes server for NeKo, MaBoSS, PhysiCell/PhysiBoSS.

alignment to variation graph inducer

A crate for working with the Task Execution Service (TES) specification.

Genomic data analysis suite in python

Yet another version of PDBx/mmCIF Python implementation

a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees