PyPI
PixelgenTechnologies/pixelator
A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) and Proximity Network (PNA) assays.
MITOct 19, 2026 · metrics 2.10.0
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Catalogue tag
#proteomics
Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.
18 records
PyPI
bigbio/qpx
qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment
Apache-2.0Oct 19, 2026 · metrics 2.10.0
PyPI
K-Dense-AI/scientific-agent-skills
Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 190,000+ scientists worldwide. 165 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.
MITSep 16, 2026 · metrics 2.10.0
PyPI
CompOmics/ms2rescore
Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
Apache-2.0Sep 14, 2026 · metrics 2.10.0
PyPI · crates.io · npm
Sigilweaver/OpenTFRaw
Pure-Rust reader for Thermo Fisher .raw mass-spectrometry files, with Python bindings.
Custom licenseSep 8, 2026 · metrics 2.10.0
PyPI
CompOmics/ms2pip
MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
Apache-2.0Sep 14, 2026 · metrics 2.10.0
npm
cyanheads/uniprot-mcp-server
Search UniProtKB by protein function, fetch curated records, map IDs across databases, and pull reference proteomes, taxonomy, and sequences via MCP. STDIO or Streamable HTTP.
Apache-2.0Oct 18, 2026 · metrics 2.10.0
PyPI
MannLabs/alphapeptdeep
Deep learning framework for proteomics
Apache-2.0Sep 19, 2026 · metrics 2.10.0
crates.io
Sigilweaver/OpenMassSpecCore
Shared core types and traits for the OpenProteo proteomics reader family.
Custom licenseOct 13, 2026 · metrics 2.10.0
PyPI
MannLabs/alpharaw
An open-source Python package to unify raw MS data accession and storage.
Apache-2.0Oct 19, 2026 · metrics 2.10.0
PyPI
TimoLassmann/kalign
A fast multiple sequence alignment program.
Apache-2.0Sep 19, 2026 · metrics 2.10.0
PyPI · Go
the-omics-os/lobster
The self-evolving agentic framework for bioinformatics
Custom licenseSep 8, 2026 · metrics 2.10.0
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Vitek-Lab/MSstatsConvert
Converter functions for the MSstats package
Custom licenseSep 12, 2026 · metrics 2.10.0
PyPI · npm
bijux/bijux-proteomics
No repository description published.
Apache-2.0Sep 8, 2026 · metrics 2.10.0
PyPI
MannLabs/alphaquant
An open-source Python package for accurate and sensitive peptide and protein quantification.
Apache-2.0Oct 16, 2026 · metrics 2.10.0
PyPI
bigbio/quantms-rescoring
quantms and ms2rescore helper functions and scripts
Apache-2.0Sep 19, 2026 · metrics 2.10.0
PyPI
Bio2Byte/scop3p-api-client
The official Scop3P REST API Python client for retrieving phospho-sites
Custom licenseSep 8, 2026 · metrics 2.10.0
npm
biojs/generator-biojs-webcomponents
Generate all the boilerplate for your next BioJS tool!
MITSep 9, 2026 · metrics 2.10.0