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#bioinformatics

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

100 records
Tagged “bioinformatics”Ranked by health index
PyPI · npm
50Moderatehealth index
N283T/pdb-mine-builder
Build a Mine-schema database from PDB data. Load PDBj structural biology data into PostgreSQL with RDKit chemical search support.
Python★ 0↓ 1,096/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
npm
50Moderatehealth index
labiomics/aramas
Plataforma educacional imersiva e gamificada projetada para o ensino de Linux e Bioinformática.
TypeScript★ 1↓ 87/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
50Moderatehealth index
pdbeurope/investigations
This application is designed to create mmcif files from facilities data.
Python★ 6↓ 1,071/moJul 15, 2026
No licenseJul 15, 2026 · metrics 1.13.0
PyPI
49At riskhealth index
PDBEurope/mmcif-gen
This application is designed to create mmcif files from facilities data.
Python★ 6Jul 17, 2026
No licenseJul 17, 2026 · metrics 1.13.0
crates.io · npm
49At riskhealth index
tkanx/bio-forge
A high-performance, pure Rust toolkit for standardizing and preparing biomolecular systems (proteins & nucleic acids). It heals missing atoms, resolves protonation states, adds solvation, and unifies topologies to forge simulation-ready structures.
Rust · TypeScript★ 141Jul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
48At riskhealth index
AkhilTeja2209/Proteinspy
Python library and a CLI tool to analyze protein sample files
Python★ 0↓ 975/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
Go
48At riskhealth index
TaqsBlaze/FlamingoDB
FlamingoDB is an open source scientific database engine built to empower researchers, scientists, and developers with efficient tools for managing, querying, and analyzing complex scientific datasets.
Go · HTML★ 6Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
npm
48At riskhealth index
juliocesar-io/nano-protein-viewer-react
React component for visualizing protein structures with the Mol* framework.
TypeScript★ 8↓ 710/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
46At riskhealth index
JinyuanSun/PymolFold
Protein folding in Pymol
Python★ 149↓ 455/moJul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
46At riskhealth index
bioexcel/biobb
Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools.
Python★ 67↓ 338/moJul 17, 2026
Apache-2.0Jul 17, 2026 · metrics 1.13.0
PyPI
45At riskhealth index
Ruibin-Liu/pdbx2df
Super lightweight and fast mmCIF/PDB/MOL2 file parser into Pandas DataFrames and backwards writer.
Python★ 11Jul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
45At riskhealth index
bioexcel/biobb_pdb_tools
No repository description published.
Python★ 0Jul 15, 2026
Apache-2.0Jul 15, 2026 · metrics 1.13.0
PyPI
45At riskhealth index
gqy20/protein-mcp
FastMCP-based protein data access tools for bioinformatics research
Python★ 0↓ 682/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
43At riskhealth index
PDBeurope/pdbecif
A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"
Python★ 38↓ 8,169/moJul 17, 2026
Apache-2.0Jul 17, 2026 · metrics 1.13.0
PyPI
43At riskhealth index
a-r-j/cpdb
Cython implementation of PDB -> DataFrame parsing
Cython · Jupyter Notebook · Python★ 34↓ 20.1K/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
crates.io
43At riskhealth index
caltechmsc/dreid-pack
A high-performance, pure Rust library for full-atom protein side-chain packing using the DREIDING force field, Goldstein+Split DEE, and tree-decomposition DP—with native protein–ligand and protein–nucleic acid interface support.
Rust★ 2Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
npm
43At riskhealth index
tianqitang1/enrichr-mcp-server
No repository description published.
TypeScript · JavaScript★ 15↓ 459/moJul 17, 2026
No licenseJul 17, 2026 · metrics 1.13.0
—
43At riskhealth index
uclorengogroup/cath-tools
Protein structure comparison tools such as SSAP and SNAP
C++ · Promela★ 67Jul 15, 2026
GPL-3.0Jul 15, 2026 · metrics 1.13.0
PyPI
42At riskhealth index
laurentrdc/crystals
Data structures, algorithms, and parsing for crystallography
Python★ 56↓ 6,850/moJul 15, 2026
GPL-3.0Jul 15, 2026 · metrics 1.13.0
npm
41At riskhealth index
molbiohive/hatchlings
Svelte 5 molecular biology component library.
Svelte · TypeScript★ 2↓ 324/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
—
40At riskhealth index
CDCgov/label
Lineage and clade classifier for influenza sequences
Perl · Shell★ 4Jul 21, 2026
Apache-2.0Jul 21, 2026 · metrics 1.13.0
PyPI
40At riskhealth index
bioexcel/biobb_md
Biobb_md is the Biobb module collection to perform molecular dynamics simulations.
Python★ 7↓ 417/moJul 17, 2026
Apache-2.0Jul 17, 2026 · metrics 1.13.0
PyPI · npm
40At riskhealth index
smartsbio/smarts-bio-jupyterlab
No repository description published.
TypeScript★ 1Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
39At riskhealth index
mr-eyes/cifi-toolkit
Toolkit for downstream processing of CiFi long reads.
C++ · Python★ 5Jul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
npm
38At riskhealth index
ppillot/biomsalign
JavaScript library for Multiple Sequence Alignment
TypeScript★ 26↓ 23K/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
36At riskhealth index
amorehead/pdb-tools
A dependency-free cross-platform swiss army knife for PDB files.
Python★ 0↓ 995/moJul 15, 2026
Apache-2.0Jul 15, 2026 · metrics 1.13.0
PyPI
36At riskhealth index
brinkmanlab/biopython-convert
Tool to interconvert between various bioinformatics formats that BioPython supports
Roff★ 4↓ 352/moJul 15, 2026
Custom licenseJul 15, 2026 · metrics 1.13.0
PyPI
36At riskhealth index
jpuglia/proteinloc
No repository description published.
Python★ 0Jul 15, 2026
No licenseJul 15, 2026 · metrics 1.13.0
npm
36At riskhealth index
molbiodiv/biojs-io-biom
Parses biom files
JavaScript★ 2↓ 2,898/moJul 17, 2026
MITJul 17, 2026 · metrics 1.13.0