Public record
Software health reportschema 0.27.0 · metrics 2.3.1 · 2026-07-31 20:25 UTC

broadinstitute / gatk-sv

A structural variation pipeline for short-read sequencing

Python · WDL · RBSD-3-Clause★ 206 stars⑂ 81 forkssince Jun 2020View on GitHub ↗
KindWeb interfacehow this is determined

broadinstitute/gatk-sv holds a health index of 88 out of 100, placing it in the Excellent band. It scores highest on Vitality (86/100) and lowest on AI Readiness (42/100). It was last updated today. 3 contributors account for most of its recent work.

88
overall / 100
Excellent

Software health index

Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean, calibrated against the distribution of the public record so bands carry percentile meaning; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At Risk ceiling of 34.

88
Exceptional93-100The record's top tier (≈ top 5%); essentially all checked criteria met
Excellent80-92Strong across the board; minor gaps
Good65-79Healthy; gaps are limited and manageable
Moderate50-64Acceptable with notable gaps; review recommended
Weak35-49Material weaknesses across several areas
At Risk20-34Significant weaknesses; adoption warrants caution
Critical1-19Severe problems (abandoned, single-maintainer, no hygiene)
VitalityCommunity &AdoptionSustainability &GovernanceEngineeringQualitySecurityAI Readiness

Score profile

Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.

The weighted overall 74 is calibrated to 88 on the published index scale (record calibration 2026-08-02).

Ownership

Broad InstituteOrganization
1,290 followers1,515 public repossince Sep 2010

This repository is backed by an organization — shared, accountable stewardship that can outlive any single maintainer.

Package ecosystems

RegistryPackageVersionDownloads / moVersionsLast publish
PyPIsvtkpoints to another repo — not scored0.2.0-21437 days ago
PyPIsv_utilspoints to another repo — not scored0.6.1-52424 days ago

Metrics by category

Vitality

Is the project alive — is code being written and are releases shipping?

86Excellent · 21% of overall
How it's scored
36/36Push recency — last push 0 days ago
18/36Commit cadence — 26/52 weeks with commits
17.8/18Commit volume — 94 commits in the last year
10/10OpenSSF Scorecard: Maintained — 13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
Inputs used
commits_last_year94
human_commit_share1
days_since_last_push0
active_weeks_last_year26
How it's scored
27/27Ships releases — 79 releases published
36/36Release recency — latest release 17 days ago
19.8/27Release cadence — a release every ~77 days
0/10OpenSSF Scorecard: Signed-Releases — no data
Inputs used
releases_count79
latest_release_tagv1.1.1
releases_from_tagsno
days_since_latest_release17
mean_days_between_releases77
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.

Community & Adoption

Does the project have users, downloads, attention, and a welcoming setup for contributors?

71Good · 17% of overall
How it's scored
37.5/60Stars — 206 stars
15.9/25Forks — 81 forks
5.6/15Watchers — 11 watchers
Inputs used
forks81
stars206
watchers11
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history

Community health

85Excellent
How it's scored
22.5/22.5README
22.5/22.5License — recognized license (BSD-3-Clause)
18/18CONTRIBUTING guide
13.5/13.5Code of conduct
0/7.2Issue template
0/6.3PR template
Inputs used
has_readmeyes
has_licenseyes
readme_badges
has_contributingyes
has_issue_templateno
has_code_of_conductyes
readme_badge_services
has_pull_request_templateno

Sustainability & Governance

Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?

76Good · 23% of overall
How it's scored
36/54Bus factor — 3 contributor(s) cover half of all commits
16.8/22.5Commit distribution — top contributor authored 25% of commits
13.5/13.5Contributor breadth — 20 contributors
10/10OpenSSF Scorecard: Contributors — project has 8 contributing companies or organizations
Inputs used
bus_factor3
contributors_sampled20
top_contributor_share0.254
How it's scored
26.8/42Issue resolution — 64% of issues closed
26.2/30PR acceptance — 560/641 decided PRs merged
0/13Newcomer PR acceptance — no first-time contributor's PR decided in 30d
12/15OpenSSF Scorecard: Code-Review — Found 25/30 approved changesets -- score normalized to 8
Inputs used
merged_prs560
open_issues99
closed_issues174
prs_merged_7d
prs_decided_7d
prs_merged_30d
prs_decided_30d
issue_closed_ratio0.637
closed_unmerged_prs81
first_time_authors_30d
first_time_prs_merged_30d
first_time_prs_decided_30d
Excluded from scoring (no data or not applicable): newcomer_pr_acceptance. Remaining weights renormalized.
How it's scored
30/30Ownership backing — organization-owned
0/20Verified domain
22.4/25Owner reach — 1,290 followers of broadinstitute
25/25Track record — 1,515 public repos, account ~15 yr old
Inputs used
followers1,290
owner_typeOrganization
is_verified
owner_loginbroadinstitute
public_repos1,515
account_age_days5,804

Engineering Quality

Are baseline engineering and documentation practices in place?

76Good · 19% of overall
How it's scored
24/24CI workflows — 5 workflow(s)
24/24Tests present
16/16Linter config — tox.ini
0/9.6Pre-commit hooks
0/6.4.editorconfig
20/20OpenSSF Scorecard: CI-Tests — 25 out of 25 merged PRs checked by a CI test -- score normalized to 10
Inputs used
has_ciyes
has_testsyes
has_editorconfigno
has_linter_configyes
has_precommit_configno
How it's scored
30/30README
0/25Documentation directory
15/15Documentation / homepage site — https://broadinstitute.github.io/gatk-sv/
10/10Repository description
10/10Topics — 4 topics
0/10Wiki
Inputs used
topicsgenomics, structural-variants, structural-variation, bioinformatics
has_wikino
homepagehttps://broadinstitute.github.io/gatk-sv/
has_readmeyes
has_docs_dirno
has_descriptionyes

Security

Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?

65Good · 16% of overall
How it's scored
6.8/7.5Binary-Artifacts — binaries present in source code
0/7.5Branch-Protection — no data
2.5/2.5CI-Tests — 25 out of 25 merged PRs checked by a CI test -- score normalized to 10
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
6/7.5Code-Review — Found 25/30 approved changesets -- score normalized to 8
2.5/2.5Contributors — project has 8 contributing companies or organizations
10/10Dangerous-Workflow — no dangerous workflow patterns detected
0/7.5Dependency-Update-Tool — no update tool detected
0/5Fuzzing — project is not fuzzed
2.5/2.5License — license file detected
7.5/7.5Maintained — 13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
0/5Packaging — no data
0/5Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
2.5/5SAST — SAST tool is not run on all commits -- score normalized to 5
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — no data
0/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
7.5/7.5Vulnerabilities — 0 existing vulnerabilities detected
Inputs used
sourceopenssf_scorecard
checks_evaluated15
scorecard_versionv5.5.0
checks_inconclusive3
scorecard_aggregate5.6
Excluded from scoring (no data or not applicable): branch_protection, packaging, signed_releases. Remaining weights renormalized.

Dependency advisories

100Exceptional
How it's scored
35/35Direct dependencies free of known advisories — no direct dependency carries a known advisory
25/25Indirect dependencies free of known advisories — no indirect dependency carries a known advisory
0/40No advisories left outstanding — no advisory carries a publication date
Inputs used
sourceosv
advisories0
affected_packages0
assessed_packages12
unassessed_packages0
affected_by_severitynone
direct_affected_packages0
Excluded from scoring (no data or not applicable): No advisories left outstanding. Remaining weights renormalized. Matched the pypi:svtk@0.2.0 runtime dependency closure — what installing the published package pulls in — 12 packages. Reachability is not analyzed.

AI Readiness

How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight (4%): agent tooling is a real maintenance signal, but a repository with none can still reach 100/100.

42Weak · 4% of overall
How it's scored
0/45Agent instructions — no CLAUDE.md / AGENTS.md / editor rules
0/15Machine-readable docs (llms.txt)
37.3/40Legible commit history — 70 of 100 human commits state their intent (structured subject or explanatory body)
Inputs used
has_llms_txtno
legible_history_share0.7
agent_instruction_files
agent_instruction_max_bytes
How it's scored
0/18One-command bootstrap
22/22Automated tests
11/11Lint / format config — tox.ini
0/11Static type checking
10/10Reproducible environment — Dockerfile
0/10Demonstrated agent practice — no agent-authored commits among the last 100
0/8Automated maintenance — no automated dependency updates observed
0/10OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
Inputs used
has_nixno
has_testsyes
lockfiles
has_dockerfileyes
typed_languageno
bootstrap_files
has_devcontainerno
has_linter_configyes
typecheck_configs
agent_commit_share0
toolchain_manifests
dependency_bot_commit_share0
How it's scored
0/45Type-checkable code — Python without a type-check config
54.4/55Manageable file sizes — 3/255 source files over 60KB
Inputs used
primary_languagePython
largest_source_bytes120,131
source_files_sampled255
oversized_source_files3
How it's scored
0/40API schema (OpenAPI/GraphQL/proto)
0/20MCP server
40/40Runnable examples — notebooks
Inputs used
example_dirsnotebooks
has_mcp_signalno
api_schema_files

Key facts

206GitHub stars
20contributors
94commits, last 12 months
0days since last push
79releases
3bus factor
99open issues
npmpackage ecosystems

Data collection warnings

  • Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
  • Could not fetch pypi package 'svqc' from its registry
  • pypi package 'svtk' points at a different repository (https://github.com/simleek/displayarray); excluded from ecosystem scoring
  • Could not fetch pypi package 'svtest' from its registry
  • pypi package 'sv_utils' points at a different repository (https://github.com/friend1ws/sv_utils); excluded from ecosystem scoring

More detail

Star and fork history 0 ★ / 81 ⇿
0Stars
81Forks
76Releases

When each star and fork was added, collected from GitHub and bucketed by day. Cumulative growth sits directly above the daily additions it is made of, so the two read against each other: steady organic accretion looks nothing like an abrupt, short-lived burst. Where that difference is measurable, it is reported as growth authenticity.

0204060808032020-072023-072026-07
Major 0Minor 0Patch 5

Each point covers 6 days.

OpenSSF Scorecard 5.6 / 10
5.6aggregate

Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).Scorecard v5.5.0 · 2026-07-31 20:24 UTC

9Binary-Artifactsbinaries present in source code
n/aBranch-Protectioninternal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md
10CI-Tests25 out of 25 merged PRs checked by a CI test -- score normalized to 10
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
8Code-ReviewFound 25/30 approved changesets -- score normalized to 8
10Contributorsproject has 8 contributing companies or organizations
10Dangerous-Workflowno dangerous workflow patterns detected
0Dependency-Update-Toolno update tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
10Maintained13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
n/aPackagingpackaging workflow not detected
0Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 0
5SASTSAST tool is not run on all commits -- score normalized to 5
0Security-Policysecurity policy file not detected
n/aSigned-Releasesno releases found
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
10Vulnerabilities0 existing vulnerabilities detected
Direct dependencies 9
RegistryPackageVersion constraintManifest
npm@docusaurus/core^3.10.1website/package.json
npm@docusaurus/plugin-google-gtag^3.10.1website/package.json
npm@docusaurus/preset-classic^3.10.1website/package.json
npm@docusaurus/theme-mermaid^3.10.1website/package.json
npm@mdx-js/react^3.0.0website/package.json
npmclsx^2.0.0website/package.json
npmprism-react-renderer^2.3.0website/package.json
npmreact^18.0.0website/package.json
npmreact-dom^18.0.0website/package.json
All dependencies 38

Full resolved dependency set from the GitHub dependency graph: 9 direct and 29 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.

RegistryPackageVersionRelation
npm@docusaurus/core^3.10.1direct
npm@docusaurus/plugin-google-gtag^3.10.1direct
npm@docusaurus/preset-classic^3.10.1direct
npm@docusaurus/theme-mermaid^3.10.1direct
npm@mdx-js/react^3.0.0direct
npmclsx^2.0.0direct
npmprism-react-renderer^2.3.0direct
npmreact^18.0.0direct
npmreact-dom^18.0.0direct
npm@docusaurus/module-type-aliases^3.10.1indirect
npm@docusaurus/types^3.10.1indirect
PyPIargparseindirect
PyPIclickindirect
PyPIcythonindirect
PyPIdillindirect
PyPIintervaltreeindirect
PyPIjsonschemaindirect
PyPImatplotlibindirect
PyPImultiprocessing-loggingindirect
PyPInatsortindirect
PyPInoseindirect
PyPInumpyindirect
PyPIopenpyxlindirect
PyPIpandasindirect
PyPIplotlyindirect
PyPIpsutilindirect
PyPIpybedtoolsindirect
PyPIpymplerindirect
PyPIpysamindirect
PyPIrequestsindirect
PyPIscipyindirect
PyPIseabornindirect
PyPIsetuptoolsindirect
PyPIstatsmodelsindirect
PyPItqdmindirect
PyPIurllib3indirect
PyPIwheelindirect
PyPIxlsxwriterindirect
Dependency advisories 0

Installing pypi:svtk@0.2.0 pulls in 12 packages, direct and transitive: 0 carry known advisories, of which 0 are direct dependencies.

No known advisories affect the assessed dependencies.

An advisory means the version recorded in the dependency graph falls inside an advisory’s affected range. Reachability is not analysed, and the graph includes development and test pins — a finding may concern tooling rather than shipped software.

Raw JSON report machine-readable
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          "body": "* Disable sv-shell and scramble dockers.\n\n* Set cran repo for the rBLAST package.\n\n* undo sv-shell and scramble disabling.\n\n* disable SV shell and scramble docker images.",
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        ],
        "description": "Is the project alive — is code being written and are releases shipping?"
      },
      {
        "key": "community",
        "band": "good",
        "name": "Community & Adoption",
        "value": 71,
        "weight": 0.17,
        "metrics": [
          {
            "key": "popularity",
            "band": "moderate",
            "name": "Popularity & adoption",
            "note": null,
            "notes": [],
            "value": 59,
            "inputs": {
              "forks": 81,
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              "growth_factor_pct": 100,
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            "components": [
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                "key": "stars",
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                "points": 37.5,
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                    "code": "stars",
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                "max_points": 60
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              {
                "key": "forks",
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                "detail": "81 forks",
                "points": 15.9,
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                    "code": "forks",
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              {
                "key": "watchers",
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                    "code": "watchers",
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                "max_points": 15
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            ]
          },
          {
            "key": "community_health",
            "band": "excellent",
            "name": "Community health",
            "note": null,
            "notes": [],
            "value": 85,
            "inputs": {
              "has_readme": true,
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              "readme_badges": null,
              "has_contributing": true,
              "has_issue_template": false,
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              "readme_badge_services": [],
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                "key": "readme",
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                "status": "met",
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              {
                "key": "license",
                "name": "License",
                "detail": "recognized license (BSD-3-Clause)",
                "points": 22.5,
                "status": "met",
                "details": [
                  {
                    "code": "license_standard",
                    "params": {}
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                  {
                    "code": "license_spdx",
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                "max_points": 22.5
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              {
                "key": "contributing_guide",
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              {
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              {
                "key": "issue_template",
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              {
                "key": "pr_template",
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        "description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
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      {
        "key": "governance",
        "band": "good",
        "name": "Sustainability & Governance",
        "value": 76,
        "weight": 0.23,
        "metrics": [
          {
            "key": "maintainer_resilience",
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            "name": "Maintainer resilience (bus factor)",
            "note": null,
            "notes": [],
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            "inputs": {
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            "components": [
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                "key": "bus_factor",
                "name": "Bus factor",
                "detail": "3 contributor(s) cover half of all commits",
                "points": 36,
                "status": "partial",
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                    "code": "bus_factor",
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                "max_points": 54
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              {
                "key": "commit_distribution",
                "name": "Commit distribution",
                "detail": "top contributor authored 25% of commits",
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                "status": "partial",
                "details": [
                  {
                    "code": "top_contributor_share",
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                "max_points": 22.5
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              {
                "key": "contributor_breadth",
                "name": "Contributor breadth",
                "detail": "20 contributors",
                "points": 13.5,
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                    "code": "contributors_sampled",
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                "max_points": 13.5
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              {
                "key": "openssf_scorecard_contributors",
                "name": "OpenSSF Scorecard: Contributors",
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                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
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            ]
          },
          {
            "key": "responsiveness",
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            "name": "Issue & PR responsiveness",
            "note": "Excluded from scoring (no data or not applicable): Newcomer PR acceptance. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
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              "merged_prs": 560,
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            "components": [
              {
                "key": "issue_resolution",
                "name": "Issue resolution",
                "detail": "64% of issues closed",
                "points": 26.8,
                "status": "partial",
                "details": [
                  {
                    "code": "issues_closed_share",
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                      "share": 64
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                ],
                "max_points": 42
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              {
                "key": "pr_acceptance",
                "name": "PR acceptance",
                "detail": "560/641 decided PRs merged",
                "points": 26.2,
                "status": "partial",
                "details": [
                  {
                    "code": "decided_prs_merged",
                    "params": {
                      "merged": 560,
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                "max_points": 30
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              {
                "key": "newcomer_pr_acceptance",
                "name": "Newcomer PR acceptance",
                "detail": "no first-time contributor's PR decided in 30d",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_newcomer_prs",
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                ],
                "max_points": 13
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              {
                "key": "openssf_scorecard_code_review",
                "name": "OpenSSF Scorecard: Code-Review",
                "detail": "Found 25/30 approved changesets -- score normalized to 8",
                "points": 12,
                "status": "partial",
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                "max_points": 15
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            ]
          },
          {
            "key": "stewardship",
            "band": "good",
            "name": "Ownership & stewardship",
            "note": null,
            "notes": [],
            "value": 77,
            "inputs": {
              "followers": 1290,
              "owner_type": "Organization",
              "is_verified": null,
              "owner_login": "broadinstitute",
              "public_repos": 1515,
              "account_age_days": 5804
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            "components": [
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                "key": "ownership_backing",
                "name": "Ownership backing",
                "detail": "organization-owned",
                "points": 30,
                "status": "met",
                "details": [
                  {
                    "code": "owner_organization",
                    "params": {}
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                ],
                "max_points": 30
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              {
                "key": "verified_domain",
                "name": "Verified domain",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
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              {
                "key": "owner_reach",
                "name": "Owner reach",
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                "points": 22.4,
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                "details": [
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                    "code": "owner_followers",
                    "params": {
                      "count": 1290,
                      "login": "broadinstitute"
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                ],
                "max_points": 25
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              {
                "key": "track_record",
                "name": "Track record",
                "detail": "1515 public repos, account ~15 yr old",
                "points": 25,
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                "details": [
                  {
                    "code": "public_repos",
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                  {
                    "code": "account_age_years",
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                      "years": 15
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                "max_points": 25
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        ],
        "description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
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      {
        "key": "engineering",
        "band": "good",
        "name": "Engineering Quality",
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        "weight": 0.19,
        "metrics": [
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            "key": "engineering_practices",
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            "note": null,
            "notes": [],
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            "inputs": {
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            "components": [
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                "key": "ci_workflows",
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                "detail": "5 workflow(s)",
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                "status": "met",
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                    "code": "ci_workflows",
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                "max_points": 24
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              {
                "key": "tests_present",
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              {
                "key": "linter_config",
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                "detail": "tox.ini",
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                "max_points": 16
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                "key": "pre_commit_hooks",
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              {
                "key": "editorconfig",
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              {
                "key": "openssf_scorecard_ci_tests",
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          },
          {
            "key": "documentation",
            "band": "good",
            "name": "Documentation",
            "note": null,
            "notes": [],
            "value": 65,
            "inputs": {
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                "structural-variants",
                "structural-variation",
                "bioinformatics"
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              "has_wiki": false,
              "homepage": "https://broadinstitute.github.io/gatk-sv/",
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            "components": [
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                "key": "readme",
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                "key": "documentation_directory",
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              {
                "key": "documentation_homepage_site",
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              {
                "key": "repository_description",
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              {
                "key": "topics",
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            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
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      {
        "key": "security",
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        "name": "Security",
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        "weight": 0.16,
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              },
              {
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            ],
            "value": 56,
            "inputs": {
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                "key": "branch_protection",
                "name": "Branch-Protection",
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                "points": 0,
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              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
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              {
                "key": "code_review",
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                "detail": "Found 25/30 approved changesets -- score normalized to 8",
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              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 8 contributing companies or organizations",
                "points": 2.5,
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                "details": [],
                "max_points": 2.5
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              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no dangerous workflow patterns detected",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "no update tool detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
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              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
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              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
                "points": 7.5,
                "status": "met",
                "details": [],
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              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow not detected",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
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                ],
                "max_points": 5
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              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
                "detail": "SAST tool is not run on all commits -- score normalized to 5",
                "points": 2.5,
                "status": "partial",
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              {
                "key": "security_policy",
                "name": "Security-Policy",
                "detail": "security policy file not detected",
                "points": 0,
                "status": "missed",
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                "max_points": 5
              },
              {
                "key": "signed_releases",
                "name": "Signed-Releases",
                "detail": "no releases found",
                "points": 0,
                "status": "excluded",
                "details": [
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                    "code": "no_data",
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                ],
                "max_points": 7.5
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              {
                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "detected GitHub workflow tokens with excessive permissions",
                "points": 0,
                "status": "missed",
                "details": [],
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              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "0 existing vulnerabilities detected",
                "points": 7.5,
                "status": "met",
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                "max_points": 7.5
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            ]
          },
          {
            "key": "dependency_advisories",
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            "name": "Dependency advisories",
            "note": "Excluded from scoring (no data or not applicable): No advisories left outstanding. Remaining weights renormalized. Matched the pypi:svtk@0.2.0 runtime dependency closure — what installing the published package pulls in — 12 packages. Reachability is not analyzed.",
            "notes": [
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                "code": "excluded_no_data",
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              },
              {
                "code": "weights_renormalized",
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              {
                "code": "advisories_scope_published",
                "params": {
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                  "assessed": 12
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              },
              {
                "code": "advisories_reachability",
                "params": {}
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            ],
            "value": 100,
            "inputs": {
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              "assessed_packages": 12,
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              "affected_by_severity": "none",
              "direct_affected_packages": 0
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            "components": [
              {
                "key": "direct_dependencies_free_of_known_advisories",
                "name": "Direct dependencies free of known advisories",
                "detail": "no direct dependency carries a known advisory",
                "points": 35,
                "status": "met",
                "details": [
                  {
                    "code": "no_direct_advisories",
                    "params": {}
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                ],
                "max_points": 35
              },
              {
                "key": "indirect_dependencies_free_of_known_advisories",
                "name": "Indirect dependencies free of known advisories",
                "detail": "no indirect dependency carries a known advisory",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "no_indirect_advisories",
                    "params": {}
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                ],
                "max_points": 25
              },
              {
                "key": "no_advisories_left_outstanding",
                "name": "No advisories left outstanding",
                "detail": "no advisory carries a publication date",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "advisories_no_publication_date",
                    "params": {}
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                ],
                "max_points": 40
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            ]
          },
          {
            "key": "malicious_dependencies",
            "band": "exceptional",
            "name": "Malicious dependencies",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "source": "osv",
              "meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
              "packages": [],
              "red_flag": false,
              "assessed_packages": 12,
              "malicious_packages": 0,
              "direct_malicious_packages": 0,
              "withdrawn_malicious_packages": 0,
              "installable_malicious_packages": 0
            },
            "components": [
              {
                "key": "no_dependency_reported_as_a_malicious_package",
                "name": "No dependency reported as a malicious package",
                "detail": "no dependency is reported as a malicious package",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "no_malicious_dependencies",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          },
          {
            "key": "high_risk_jurisdiction_exposure",
            "band": "exceptional",
            "name": "High-Risk Jurisdiction Exposure",
            "note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
            "notes": [
              {
                "code": "jurisdiction_evidence_limits",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "meaning": "self-published location evidence; not nationality or citizenship",
              "red_flag": false,
              "exposures": [],
              "policy_countries": [
                "Russia",
                "Iran",
                "North Korea"
              ],
              "commit_weight_rule": {
                "min_commits": 50,
                "min_commit_share": 0.1
              },
              "review_only_matches": 0,
              "below_threshold_exposures": [],
              "assessed_self_published_locations": 6
            },
            "components": [
              {
                "key": "policy_exposure_multiplier",
                "name": "Policy exposure multiplier",
                "detail": "no confirmed policy-scope location match",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "jurisdiction_no_match",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "weak",
        "name": "AI Readiness",
        "value": 42,
        "weight": 0.04,
        "metrics": [
          {
            "key": "ai_agent_context",
            "band": "weak",
            "name": "Agent context & guidance",
            "note": null,
            "notes": [],
            "value": 37,
            "inputs": {
              "has_llms_txt": false,
              "legible_history_share": 0.7,
              "agent_instruction_files": [],
              "agent_instruction_max_bytes": null
            },
            "components": [
              {
                "key": "agent_instructions",
                "name": "Agent instructions",
                "detail": "no CLAUDE.md / AGENTS.md / editor rules",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_instructions",
                    "params": {}
                  }
                ],
                "max_points": 45
              },
              {
                "key": "machine_readable_docs_llms_txt",
                "name": "Machine-readable docs (llms.txt)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "legible_commit_history",
                "name": "Legible commit history",
                "detail": "70 of 100 human commits state their intent (structured subject or explanatory body)",
                "points": 37.3,
                "status": "partial",
                "details": [
                  {
                    "code": "legible_history",
                    "params": {
                      "legible": 70,
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "ai_verify_loop",
            "band": "weak",
            "name": "Verify loop (build / test / typecheck)",
            "note": null,
            "notes": [],
            "value": 43,
            "inputs": {
              "has_nix": false,
              "has_tests": true,
              "lockfiles": [],
              "has_dockerfile": true,
              "typed_language": false,
              "bootstrap_files": [],
              "has_devcontainer": false,
              "has_linter_config": true,
              "typecheck_configs": [],
              "agent_commit_share": 0,
              "toolchain_manifests": [],
              "dependency_bot_commit_share": 0
            },
            "components": [
              {
                "key": "one_command_bootstrap",
                "name": "One-command bootstrap",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 18
              },
              {
                "key": "automated_tests",
                "name": "Automated tests",
                "detail": null,
                "points": 22,
                "status": "met",
                "details": [],
                "max_points": 22
              },
              {
                "key": "lint_format_config",
                "name": "Lint / format config",
                "detail": "tox.ini",
                "points": 11,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "tox.ini"
                    }
                  }
                ],
                "max_points": 11
              },
              {
                "key": "static_type_checking",
                "name": "Static type checking",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
              },
              {
                "key": "reproducible_environment",
                "name": "Reproducible environment",
                "detail": "Dockerfile",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "Dockerfile"
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "demonstrated_agent_practice",
                "name": "Demonstrated agent practice",
                "detail": "no agent-authored commits among the last 100",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_authored_commits",
                    "params": {
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "automated_maintenance",
                "name": "Automated maintenance",
                "detail": "no automated dependency updates observed",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_dependency_automation",
                    "params": {}
                  }
                ],
                "max_points": 8
              },
              {
                "key": "openssf_scorecard_pinned_dependencies",
                "name": "OpenSSF Scorecard: Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "ai_code_legibility",
            "band": "moderate",
            "name": "Code legibility for models",
            "note": null,
            "notes": [],
            "value": 54,
            "inputs": {
              "primary_language": "Python",
              "largest_source_bytes": 120131,
              "source_files_sampled": 255,
              "oversized_source_files": 3
            },
            "components": [
              {
                "key": "type_checkable_code",
                "name": "Type-checkable code",
                "detail": "Python without a type-check config",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_typecheck_config_language",
                    "params": {
                      "language": "Python"
                    }
                  }
                ],
                "max_points": 45
              },
              {
                "key": "manageable_file_sizes",
                "name": "Manageable file sizes",
                "detail": "3/255 source files over 60KB",
                "points": 54.4,
                "status": "partial",
                "details": [
                  {
                    "code": "oversized_source_files",
                    "params": {
                      "kb": 60,
                      "sampled": 255,
                      "oversized": 3
                    }
                  }
                ],
                "max_points": 55
              }
            ]
          },
          {
            "key": "ai_interfaces",
            "band": "weak",
            "name": "Machine-readable interfaces",
            "note": null,
            "notes": [],
            "value": 40,
            "inputs": {
              "example_dirs": [
                "notebooks"
              ],
              "has_mcp_signal": false,
              "api_schema_files": []
            },
            "components": [
              {
                "key": "api_schema_openapi_graphql_proto",
                "name": "API schema (OpenAPI/GraphQL/proto)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 40
              },
              {
                "key": "mcp_server",
                "name": "MCP server",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "runnable_examples",
                "name": "Runnable examples",
                "detail": "notebooks",
                "points": 40,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "notebooks"
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          }
        ],
        "description": "How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight: agent tooling is a real maintenance signal, but its absence must never gate the top of the scale (calibration saturates at raw 91, so 100/100 remains reachable with AI Readiness at zero)."
      }
    ],
    "classification": {
      "labels": [
        "web-ui"
      ],
      "scores": {
        "web-ui": 4
      },
      "primary": "web-ui",
      "evidence": [
        {
          "tier": "dependencies",
          "label": "web-ui",
          "source": "dep:react-dom",
          "weight": 4
        }
      ],
      "artifacts": [],
      "confidence": "low",
      "host_extension": false,
      "runs_as_process": true,
      "consumed_by_code": false
    },
    "metrics_version": "2.3.1"
  },
  "warnings": [
    "Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token",
    "Could not fetch pypi package 'svqc' from its registry",
    "pypi package 'svtk' points at a different repository (https://github.com/simleek/displayarray); excluded from ecosystem scoring",
    "Could not fetch pypi package 'svtest' from its registry",
    "pypi package 'sv_utils' points at a different repository (https://github.com/friend1ws/sv_utils); excluded from ecosystem scoring"
  ],
  "report_type": "repository",
  "generated_at": "2026-07-31T20:25:13.675172Z",
  "schema_version": "0.27.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/b/broadinstitute/gatk-sv.svg",
  "full_name": "broadinstitute/gatk-sv",
  "license_state": "standard",
  "license_spdx": "BSD-3-Clause"
}

Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.

Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v2.3.1, schema v0.27.0 — full methodology · metrics wiki.

How one result sits in the wider record: aggregate statisticsPyPI.