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#bioinformatics

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

101 records
Tagged “bioinformatics”Ranked by health index
PyPI
60Moderatehealth index
Electrostatics/mmcif_pdbx
Yet another version of PDBx/mmCIF Python implementation
Python★ 9Jul 15, 2026
CC0-1.0Jul 15, 2026 · metrics 1.13.0
PyPI · crates.io · npm
60Moderatehealth index
Sigilweaver/OpenTFRaw
Pure-Rust reader for Thermo Fisher .raw mass-spectrometry files, with Python bindings.
Rust★ 12↓ 3,365/moJul 15, 2026
Custom licenseJul 15, 2026 · metrics 1.13.0
PyPI · npm · crates.io
60Moderatehealth index
illumination-k/pubmed-client
No repository description published.
Rust★ 1↓ 1,938/moJul 18, 2026
MITJul 18, 2026 · metrics 1.13.0
PyPI · Go
60Moderatehealth index
the-omics-os/lobster
The self-evolving agentic framework for bioinformatics
Python★ 42Jul 15, 2026
Custom licenseJul 15, 2026 · metrics 1.13.0
npm · PyPI
59Moderatehealth index
full-spectrum-analytics/dash-seqviz
A dash wrapper of the javascript DNA, RNA and protein sequence viewer
Python · JavaScript★ 1↓ 317/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
59Moderatehealth index
pepkit/pepdbagent
Database for storing sample metadata
Python★ 2↓ 1,314/moJul 15, 2026
BSD-2-ClauseJul 15, 2026 · metrics 1.13.0
npm · PyPI
59Moderatehealth index
plotly/dash-bio
Open-source bioinformatics components for Dash
Python · CSS · JavaScript★ 573↓ 566/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI · npm
58Moderatehealth index
haqaliz/contig
An agentic bioinformatics analyst: it runs the analysis on your own compute, self-heals failures, verifies the output, and returns a reproducible result.
Python · TypeScript★ 0↓ 0/moJul 14, 2026
Apache-2.0Jul 14, 2026 · metrics 1.13.0
—
57Moderatehealth index
BIoJulia/BIoStructures.jl
A Julia package to read, write and manipulate macromolecular structures
Julia★ 105Jul 17, 2026
Custom licenseJul 17, 2026 · metrics 1.13.0
—
57Moderatehealth index
brentp/somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
Nim · HTML★ 329Jul 21, 2026
MITJul 21, 2026 · metrics 1.13.0
crates.io
57Moderatehealth index
haddocking/haddock-restraints
Generate restraints to be used in HADDOCK
Rust★ 6↓ 54/moJul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI · crates.io
57Moderatehealth index
hfooladi/pdbrust
A Rust library for parsing PDB (Protein Data Bank) files
Rust★ 20↓ 997/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
57Moderatehealth index
igvteam/igv-reports
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
Python · HTML★ 435↓ 1,420/moJul 23, 2026
MITJul 23, 2026 · metrics 1.13.0
crates.io
57Moderatehealth index
stjude-rust-labs/tes
A crate for working with the Task Execution Service (TES) specification.
Rust★ 13↓ 14.7K/moJul 23, 2026
Apache-2.0Jul 23, 2026 · metrics 1.13.0
PyPI
56Moderatehealth index
DoctorDean/lazarus
An agent that takes a dead research repo and turns it into a callable pipeline component.
Python★ 13↓ 375/moJul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
56Moderatehealth index
PDBeurope/rellig
Identifies relevant ligands in the PDB
Python★ 9Jul 15, 2026
Apache-2.0Jul 15, 2026 · metrics 1.13.0
Go
56Moderatehealth index
TimOthYStIles/poly
A Go package for engineering organisms.
Go★ 731Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
56Moderatehealth index
bioexcel/biobb_common
Biobb_common is the base package required to use the biobb packages.
Python★ 0↓ 1,398/moJul 17, 2026
Apache-2.0Jul 17, 2026 · metrics 1.13.0
PyPI
56Moderatehealth index
elkins-lab/resonance-flow
JAX-native differentiable protein folding framework integrating experimental NMR constraints (RDCs) and biophysical "self-correction." Several Jupyter Notebooks visualize the concepts.
Python★ 1Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
56Moderatehealth index
intersystems-community/iris-vector-graph
High-performance graph database + vector search powered by InterSystems IRIS
Python★ 1↓ 2,494/moJul 19, 2026
Custom licenseJul 19, 2026 · metrics 1.13.0
PyPI
56Moderatehealth index
jlsteenwyk/orthosnap
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
Python★ 31↓ 221/moJul 18, 2026
MITJul 18, 2026 · metrics 1.13.0
PyPI
55Moderatehealth index
BioPandas/biopandas
Working with molecular structures in pandas DataFrames
Python★ 756Jul 21, 2026
BSD-3-ClauseJul 21, 2026 · metrics 1.13.0
npm
54Moderatehealth index
biowasm/aioli
Framework for building fast genomics web tools with WebAssembly and WebWorkers
JavaScript★ 118↓ 3,166/moJul 24, 2026
MITJul 24, 2026 · metrics 1.13.0
npm
54Moderatehealth index
gmod/g2p_mapper
No repository description published.
TypeScript★ 0↓ 6,170/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
npm
53Moderatehealth index
PDBeurope/mmcif-validator
Real-time VSCode extension and standalone Python script for validating mmCIF/CIF files against the PDBx/mmCIF dictionary or any CIF dictionary.
Python · TypeScript★ 10Jul 15, 2026
No licenseJul 15, 2026 · metrics 1.13.0
crates.io
53Moderatehealth index
bio-rs/bio-rs
AI-ready biological data I/O, validation, and tokenization engine
Rust · Python★ 3Jul 15, 2026
Custom licenseJul 15, 2026 · metrics 1.13.0
PyPI
53Moderatehealth index
electrostatics/apbs
Software for biomolecular electrostatics and solvation calculations
C · Python · MATLAB★ 134Jul 17, 2026
Custom licenseJul 17, 2026 · metrics 1.13.0
PyPI
52Moderatehealth index
elkins-lab/synth-cryo-em
Generate realistic synthetic 3D Cryo-EM densities from structural models for testing algorithms and training ML models.
Python · Jupyter Notebook★ 2Jul 17, 2026
No licenseJul 17, 2026 · metrics 1.13.0
PyPI
52Moderatehealth index
noahhenrikkleinschmidt/biobuild
A fragment-based molecular assembly toolkit
Python★ 51Jul 17, 2026
AGPL-3.0Jul 17, 2026 · metrics 1.13.0
—
51Moderatehealth index
CDCgov/irma
IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.
Perl · Shell★ 28Jul 21, 2026
Apache-2.0Jul 21, 2026 · metrics 1.13.0