公开记录
软件健康报告模式 0.27.0 · 指标 2.3.1 · 2026-07-24 14:06 UTC

Acellera / moleculekit

MoleculeKit: Your favorite molecule manipulation kit

Python自定义许可证★ 237 星标⑂ 35 复刻始于 2019年3月在 GitHub 上查看 ↗
类型网页界面如何判定

Acellera/moleculekit 的健康指数为 100 分中的 80 分,处于「优秀」区间。 其得分最高的类别是Vitality(89/100),最低的是Community & Adoption(55/100)。 最近一次更新在今天。 近期的大部分工作由 1 位贡献者完成。

80
总分 / 100
优秀

软件健康指数

指标归入加权类别,统一采用 1–100 量表。总体分先取类别加权平均,再依据公开记录的分布进行校准,使各等级具有百分位含义;当公开证据触发高风险司法辖区政策时,评级会按政策调整,并设置 34(存在风险)的上限。

80
卓越93-100公开记录中的最高层级(约前 5%);基本满足所有检验标准
优秀80-92各方面均表现强劲;仅有少量不足
良好65-79健康;不足之处有限且可控
中等50-64可接受,但存在明显不足;建议进行审查
薄弱35-49多个领域存在实质性薄弱环节
存在风险20-34存在重大薄弱环节;采用时应保持审慎
危急1-19问题严重(项目被弃置、仅有单一维护者、缺乏基本工程规范)
活力社区与采用可持续性与治理工程质量安全AI 就绪度

评分画像

每条轴代表一个类别。形状比平均值更重要——健康的对象会填满整个图形,而“一峰一谷”式画像意味着某一维度的优势正掩盖另一维度的风险。

加权总体分 68 经校准后在公布的指数量表上为 80(记录校准 2026-08-02)。

所有权

Acellera组织
67 关注者38 个公开仓库始于 2014年6月

该仓库由组织支持——共同承担、可问责的托管责任,可延续于任何单一维护者之后。

软件包生态系统

注册表软件包版本月下载量版本数最近发布
PyPImoleculekit1.15.714,3412540 天前
PyPImolkitten0.0.79411453 天前

按类别列示的指标

活力

项目是否仍有生命——是否仍在编写代码,是否仍在发布版本?

89优秀 · 占总体的 21%
评分方式
36/36推送新近度 — 最近一次推送于 0 天前
18.7/36提交节奏 — 52 周中有 27 周有提交
18/18提交量 — 最近一年 227 次提交
10/10OpenSSF Scorecard:Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
所用输入
commits_last_year227
human_commit_share0.97
days_since_last_push0
active_weeks_last_year27

发布纪律

98卓越
评分方式
27/27有发布版本 — 已发布 58 个发布版本
36/36发布时效 — 最近一次发布版本于 2 天前
27/27发布节奏 — 约每 3 天发布一次
8/10OpenSSF Scorecard:Signed-Releases — 5 out of the last 5 releases have a total of 5 signed artifacts.
所用输入
releases_count58
latest_release_tagv1.15.6
releases_from_tags
days_since_latest_release2
mean_days_between_releases3

社区与采用

项目是否拥有用户、下载量与关注度,并具备欢迎贡献者参与的配置?

55中等 · 占总体的 17%
评分方式
38.5/60星标 — 237 个星标
12.8/25复刻 — 35 个复刻
5/15关注者 — 9 位关注者
所用输入
forks35
stars237
watchers9
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history

社区健康

44薄弱
评分方式
22.5/22.5README
16.9/22.5许可证 — 存在许可证文件,但不是可识别的许可证
0/18CONTRIBUTING 指南
0/13.5行为准则
0/7.2议题模板
0/6.3PR 模板
所用输入
has_readme
has_license
readme_badges
has_contributing
has_issue_template
has_code_of_conduct
readme_badge_services
has_pull_request_template
评分方式
55.5/80月度下载量 — pypi 合计每月 14,435 次下载
0/20注册表被依赖数 — 该生态系统不报告此项
所用输入
packagesmoleculekit, molkitten
dependents
ecosystemspypi
total_downloads
monthly_downloads14,435
已排除计分(无数据或不适用):注册表被依赖数。 其余权重已重新归一化。

可持续性与治理

项目能否在其成员之外延续——巴士系数、响应能力、由谁支持,以及软件包的维护状况?

63中等 · 占总体的 23%
评分方式
9/54巴士系数 — 1 位贡献者贡献了半数提交
0.5/22.5提交分布 — 头号贡献者编写了 98% 的提交
12.2/13.5贡献者广度 — 9 位贡献者
6/10OpenSSF Scorecard:Contributors — project has 2 contributing companies or organizations -- score normalized to 6
所用输入
bus_factor1
contributors_sampled9
top_contributor_share0.98
评分方式
39.1/42议题解决 — 93% 的议题已关闭
23.9/30PR 接受 — 已裁定的 PR 中 39/49 已合并
0/13Newcomer PR acceptance — 30 天内没有首次贡献者的 PR 得到裁决
0/15OpenSSF Scorecard:Code-Review — Found 0/28 approved changesets -- score normalized to 0
所用输入
merged_prs39
open_issues7
closed_issues96
prs_merged_7d
prs_decided_7d
prs_merged_30d
prs_decided_30d
issue_closed_ratio0.932
closed_unmerged_prs10
first_time_authors_30d
first_time_prs_merged_30d
first_time_prs_decided_30d
已排除计分(无数据或不适用):newcomer_pr_acceptance。 其余权重已重新归一化。
评分方式
30/30所有权背书 — 组织持有
0/20已验证域名
13.2/25所有者影响力 — Acellera 有 67 位关注者
23.6/25既往记录 — 38 个公开仓库,账户约 12 年
所用输入
followers67
owner_typeOrganization
is_verified
owner_loginAcellera
public_repos38
account_age_days4,434
评分方式
25/25已发布且可解析 — pypi 上有 2 个软件包
35/35发布时效 — 最近一次发布于 0 天前
20/20版本历史 — 254 个已发布版本
20/20未被弃用 — 活跃,未被弃用或撤回
所用输入
packagesmoleculekit, molkitten
ecosystemspypi
any_deprecated
min_days_since_publish0

工程质量

基础的工程与文档实践是否到位?

63中等 · 占总体的 19%

工程实践

48薄弱
评分方式
24/24CI 工作流 — 6 个工作流
24/24存在测试
0/16Linter 配置
0/9.6Pre-commit 钩子
0/6.4.editorconfig
0/20OpenSSF Scorecard:CI-Tests — 0 out of 2 merged PRs checked by a CI test -- score normalized to 0
所用输入
has_ci
has_tests
has_editorconfig
has_linter_config
has_precommit_config

文档

85优秀
评分方式
30/30README
25/25文档目录
0/15文档 / 主页站点
10/10仓库描述
10/10主题标签 — 6 个主题标签
10/10Wiki
所用输入
topicsmolecule, machine-learning, proteins, drug-discovery, molecular-modeling, molecular-simulation
has_wiki
homepage
has_readme
has_docs_dir
has_description

安全

可见的安全与供应链实践是否稳固,且不存在未解决的高风险司法辖区暴露?

67良好 · 占总体的 16%

安全态势

59中等
评分方式
7.5/7.5Binary-Artifacts — no binaries found in the repo
0/7.5Branch-Protection — 无数据
0/2.5CI-Tests — 0 out of 2 merged PRs checked by a CI test -- score normalized to 0
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
0/7.5Code-Review — Found 0/28 approved changesets -- score normalized to 0
1.5/2.5Contributors — project has 2 contributing companies or organizations -- score normalized to 6
10/10Dangerous-Workflow — no dangerous workflow patterns detected
7.5/7.5Dependency-Update-Tool — update tool detected
0/5Fuzzing — project is not fuzzed
2.2/2.5许可证 — license file detected
7.5/7.5Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
0/5Packaging — 无数据
0/5Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
5/5SAST — SAST tool is run on all commits
0/5Security-Policy — security policy file not detected
6/7.5Signed-Releases — 5 out of the last 5 releases have a total of 5 signed artifacts.
0/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
7.5/7.5Vulnerabilities — 0 existing vulnerabilities detected
所用输入
sourceopenssf_scorecard
checks_evaluated16
scorecard_versionv5.5.0
checks_inconclusive2
scorecard_aggregate5.9
已排除计分(无数据或不适用):branch_protection, packaging。 其余权重已重新归一化。
评分方式
35/35直接依赖不含已知公告 — 没有直接依赖携带已知公告
0/25间接依赖不含已知公告 — 在此范围内,传递依赖集合无法与开发和测试依赖区分
0/40没有长期未处理的公告 — 没有公告带有发布日期
所用输入
sourceosv
advisories0
affected_packages0
assessed_packages296
unassessed_packages16
affected_by_severitynone
direct_affected_packages0
已排除计分(无数据或不适用):间接依赖不含已知公告, 没有长期未处理的公告。 其余权重已重新归一化。 已将 296 个已解析依赖与 OSV 比对。 有 16 项无法评估——没有已解析的版本、生态系统不受支持,或超出所报告的软件包清单。 该仓库未发布任何索引可解析的软件包,因此改为评估仓库依赖图。该图将开发与测试版本固定同交付的依赖混在一起,因此仅对声明的运行时依赖计分;传递性发现仅作为背景信息列出,不计入评分。 未对可达性进行分析。

AI 就绪度

该仓库在多大程度上具备与 AI 编码代理协同开发与维护的条件?权重刻意设小(4%):代理工具链是一项真实的维护信号,但完全不具备的仓库仍可达到 100/100。

64中等 · 占总体的 4%
评分方式
45/45代理指令 — AGENTS.md
15/15机器可读文档(llms.txt) — 存在 llms.txt
0.5/40可读的提交历史 — 97 次人类提交中有 1 次说明了意图(结构化标题或解释性正文)
所用输入
has_llms_txt
legible_history_share0.01
agent_instruction_filesAGENTS.md
agent_instruction_max_bytes9,201
评分方式
18/18一条命令的引导启动 — Makefile, doc/Makefile
22/22自动化测试
0/11Lint / 格式化配置
11/11静态类型检查 — viewer-frontend/tsconfig.json
10/10可复现环境 — Dockerfile, lockfile
0/10已体现的代理实践 — 最近 100 次提交中没有代理编写的提交
8/8自动化维护 — 最近 100 次提交中有 3 次为自动依赖更新
0/10OpenSSF Scorecard:Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
所用输入
has_nix
has_tests
lockfilespackage-lock.json
has_dockerfile
typed_language
bootstrap_filesMakefile, doc/Makefile
has_devcontainer
has_linter_config
typecheck_configsviewer-frontend/tsconfig.json
agent_commit_share0
toolchain_manifests
dependency_bot_commit_share0.03
评分方式
27/45可类型检查的代码 — Python,已配置类型检查(viewer-frontend/tsconfig.json)
52.5/55可控的文件大小 — 采样的 195 个源文件中有 9 个超过 60KB
所用输入
primary_languagePython
largest_source_bytes3,419,873
source_files_sampled195
oversized_source_files9
评分方式
0/40API 模式(OpenAPI/GraphQL/proto)
0/20MCP 服务器
40/40可运行示例 — examples, notebooks
所用输入
example_dirsexamples, notebooks
has_mcp_signal
api_schema_files

关键数据

237GitHub 星标
9贡献者
227最近 12 个月提交数
0距最近推送天数
58发布版本数
1巴士系数(bus factor)
7开放议题
npm, PyPI软件包生态系统数

数据采集警告

  • Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
  • deps.dev does not index pypi:moleculekit@1.15.7; advisories assessed against the repository dependency graph instead

更多细节

Star 与 Fork 历史 0 ★ / 35 ⇿
0Star
35Fork
10发布

每颗 star 和每个 fork 的添加时间,来自 GitHub 并按天汇总。累计增长位于其构成来源——每日新增——的正上方,二者可相互对照:稳定的自然增长与短暂的突增形态截然不同。当这一差别可被衡量时,它会作为增长真实性予以报告。

01325383412019-052022-062025-07
主版本 0次版本 1修订 9

每个点涵盖 6 天。

OpenSSF Scorecard 5.9 / 10
5.9综合

来自开源项目 OpenSSF Scorecard 的独立、工具无关的安全评估。每项检查奖励的是安全实践本身,而非特定供应商的工具。Scorecard 无法判定的检查项标记为 不适用,并从安全评分中剔除(绝不按零分计)。Scorecard v5.5.0 · 2026-07-24 14:05 UTC

10Binary-Artifactsno binaries found in the repo
不适用Branch-Protectioninternal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md
0CI-Tests0 out of 2 merged PRs checked by a CI test -- score normalized to 0
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
0Code-ReviewFound 0/28 approved changesets -- score normalized to 0
6Contributorsproject has 2 contributing companies or organizations -- score normalized to 6
10Dangerous-Workflowno dangerous workflow patterns detected
10Dependency-Update-Toolupdate tool detected
0Fuzzingproject is not fuzzed
9Licenselicense file detected
10Maintained30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
不适用Packagingpackaging workflow not detected
0Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 0
10SASTSAST tool is run on all commits
0Security-Policysecurity policy file not detected
8Signed-Releases5 out of the last 5 releases have a total of 5 signed artifacts.
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
10Vulnerabilities0 existing vulnerabilities detected
直接依赖 15
注册表软件包版本约束清单文件
PyPInumpy>=1.23.5pyproject.toml
PyPIpandas>=1.1.2pyproject.toml
PyPInetworkxpyproject.toml
PyPItqdmpyproject.toml
PyPImsgpackpyproject.toml
PyPIrequestspyproject.toml
PyPImatplotlibpyproject.toml
PyPIrdkit>=2020.09.5pyproject.toml
PyPImdtrajpyproject.toml
PyPIacellera-propkapyproject.toml
PyPIacellera-pdb2pqr>=3.7.1.post1pyproject.toml
PyPIbiopythonpyproject.toml
npmmolstar^5.7.0viewer-frontend/package.json
npmreact^19.2.4viewer-frontend/package.json
npmreact-dom^19.2.4viewer-frontend/package.json
全部依赖 312

来自 GitHub 依赖图的完整解析依赖集合:8 个直接依赖与 304 个间接(传递)软件包。仓库提交锁文件时,传递闭包才是完整的。

注册表软件包版本关系
npmmolstar5.9.0直接
npmreact19.2.6直接
npmreact-dom19.2.6直接
PyPIacellera-pdb2pqr直接
PyPInetworkx直接
PyPInumpy直接
PyPIpandas直接
PyPIrdkit直接
npm@emnapi/core1.10.0间接
npm@emnapi/runtime1.10.0间接
npm@emnapi/wasi-threads1.2.1间接
npm@jridgewell/sourcemap-codec1.5.5间接
npm@napi-rs/wasm-runtime1.1.5间接
npm@oxc-project/types0.133.0间接
npm@rolldown/binding-android-arm641.0.3间接
npm@rolldown/binding-darwin-arm641.0.3间接
npm@rolldown/binding-darwin-x641.0.3间接
npm@rolldown/binding-freebsd-x641.0.3间接
npm@rolldown/binding-linux-arm-gnueabihf1.0.3间接
npm@rolldown/binding-linux-arm64-gnu1.0.3间接
npm@rolldown/binding-linux-arm64-musl1.0.3间接
npm@rolldown/binding-linux-ppc64-gnu1.0.3间接
npm@rolldown/binding-linux-s390x-gnu1.0.3间接
npm@rolldown/binding-linux-x64-gnu1.0.3间接
npm@rolldown/binding-linux-x64-musl1.0.3间接
npm@rolldown/binding-openharmony-arm641.0.3间接
npm@rolldown/binding-wasm32-wasi1.0.3间接
npm@rolldown/binding-win32-arm64-msvc1.0.3间接
npm@rolldown/binding-win32-x64-msvc1.0.3间接
npm@rolldown/pluginutils1.0.1间接
npm@rollup/rollup-android-arm-eabi4.60.4间接
npm@rollup/rollup-android-arm644.60.4间接
npm@rollup/rollup-darwin-arm644.60.4间接
npm@rollup/rollup-darwin-x644.60.4间接
npm@rollup/rollup-freebsd-arm644.60.4间接
npm@rollup/rollup-freebsd-x644.60.4间接
npm@rollup/rollup-linux-arm-gnueabihf4.60.4间接
npm@rollup/rollup-linux-arm-musleabihf4.60.4间接
npm@rollup/rollup-linux-arm64-gnu4.60.4间接
npm@rollup/rollup-linux-arm64-musl4.60.4间接
npm@rollup/rollup-linux-loong64-gnu4.60.4间接
npm@rollup/rollup-linux-loong64-musl4.60.4间接
npm@rollup/rollup-linux-ppc64-gnu4.60.4间接
npm@rollup/rollup-linux-ppc64-musl4.60.4间接
npm@rollup/rollup-linux-riscv64-gnu4.60.4间接
npm@rollup/rollup-linux-riscv64-musl4.60.4间接
npm@rollup/rollup-linux-s390x-gnu4.60.4间接
npm@rollup/rollup-linux-x64-gnu4.60.4间接
npm@rollup/rollup-linux-x64-musl4.60.4间接
npm@rollup/rollup-openbsd-x644.60.4间接
npm@rollup/rollup-openharmony-arm644.60.4间接
npm@rollup/rollup-win32-arm64-msvc4.60.4间接
npm@rollup/rollup-win32-ia32-msvc4.60.4间接
npm@rollup/rollup-win32-x64-gnu4.60.4间接
npm@rollup/rollup-win32-x64-msvc4.60.4间接
npm@scarf/scarf1.4.0间接
npm@tybys/wasm-util0.10.2间接
npm@types/argparse2.0.17间接
npm@types/benchmark2.1.5间接
npm@types/body-parser1.19.6间接
npm@types/compression1.8.1间接
npm@types/connect3.4.38间接
npm@types/debug4.1.13间接
npm@types/estree1.0.8间接
npm@types/estree1.0.9间接
npm@types/estree-jsx1.0.5间接
npm@types/express5.0.6间接
npm@types/express-serve-static-core5.1.1间接
npm@types/hast3.0.4间接
npm@types/http-errors2.0.5间接
npm@types/mdast4.0.4间接
npm@types/ms2.1.0间接
npm@types/node22.19.19间接
npm@types/node24.12.4间接
npm@types/qs6.15.1间接
npm@types/range-parser1.2.7间接
npm@types/react19.2.15间接
npm@types/react-dom19.2.3间接
npm@types/send1.2.1间接
npm@types/serve-static2.2.0间接
npm@types/swagger-ui-dist3.30.6间接
npm@types/unist2.0.11间接
npm@types/unist3.0.3间接
npm@ungap/structured-clone1.3.1间接
npm@vitejs/plugin-react6.0.2间接
npmaccepts2.0.0间接
npmargparse2.0.1间接
npmarray-find-index1.0.2间接
npmbail2.0.2间接
npmbody-parser2.3.0间接
npmbytes3.1.2间接
npmcall-bind-apply-helpers1.0.2间接
npmcall-bound1.0.4间接
npmccount2.0.1间接
npmcharacter-entities2.0.2间接
npmcharacter-entities-html42.1.0间接
npmcharacter-entities-legacy3.0.0间接
npmcharacter-reference-invalid2.0.1间接
npmcomma-separated-tokens2.0.3间接
npmcommenting1.1.0间接
npmcompressible2.0.18间接
npmcompression1.8.1间接
npmcontent-disposition1.1.0间接
npmcontent-type1.0.5间接
npmcontent-type2.0.0间接
npmcookie0.7.2间接
npmcookie-signature1.2.2间接
npmcors2.8.6间接
npmcsstype3.2.3间接
npmdebug2.6.9间接
npmdebug4.4.3间接
npmdecode-named-character-reference1.3.0间接
npmdepd2.0.0间接
npmdequal2.0.3间接
npmdetect-libc2.1.2间接
npmdevlop1.1.0间接
npmdunder-proto1.0.1间接
npmee-first1.1.1间接
npmencodeurl2.0.0间接
npmes-define-property1.0.1间接
npmes-errors1.3.0间接
npmes-object-atoms1.1.2间接
npmescape-html1.0.3间接
npmescape-string-regexp5.0.0间接
npmestree-util-is-identifier-name3.0.0间接
npmetag1.8.1间接
npmexpress5.2.1间接
npmextend3.0.2间接
npmfdir6.5.0间接
npmfinalhandler2.1.1间接
npmforwarded0.2.0间接
npmfp-ts2.16.11间接
npmfresh2.0.0间接
npmfsevents2.3.3间接
npmfunction-bind1.1.2间接
npmget-intrinsic1.3.0间接
npmget-proto1.0.1间接
npmgopd1.2.0间接
npmh264-mp4-encoder1.0.12间接
npmhas-symbols1.1.0间接
npmhasown2.0.3间接
npmhast-util-to-jsx-runtime2.3.6间接
npmhast-util-whitespace3.0.0间接
npmhtml-url-attributes3.0.1间接
npmhttp-errors2.0.1间接
npmiconv-lite0.7.2间接
npmimmutable5.1.9间接
npminherits2.0.4间接
npminline-style-parser0.2.7间接
npmio-ts2.2.22间接
npmipaddr.js1.9.1间接
npmis-alphabetical2.0.1间接
npmis-alphanumerical2.0.1间接
npmis-decimal2.0.1间接
npmis-hexadecimal2.0.1间接
npmis-plain-obj4.1.0间接
npmis-promise4.0.0间接
npmlightningcss1.32.0间接
npmlightningcss-android-arm641.32.0间接
npmlightningcss-darwin-arm641.32.0间接
npmlightningcss-darwin-x641.32.0间接
npmlightningcss-freebsd-x641.32.0间接
npmlightningcss-linux-arm-gnueabihf1.32.0间接
npmlightningcss-linux-arm64-gnu1.32.0间接
npmlightningcss-linux-arm64-musl1.32.0间接
npmlightningcss-linux-x64-gnu1.32.0间接
npmlightningcss-linux-x64-musl1.32.0间接
npmlightningcss-win32-arm64-msvc1.32.0间接
npmlightningcss-win32-x64-msvc1.32.0间接
npmlodash4.18.1间接
npmlongest-streak3.1.0间接
npmmagic-string0.30.21间接
npmmarkdown-table3.0.4间接
npmmath-intrinsics1.1.0间接
npmmdast-util-find-and-replace3.0.2间接
npmmdast-util-from-markdown2.0.3间接
npmmdast-util-gfm3.1.0间接
npmmdast-util-gfm-autolink-literal2.0.1间接
npmmdast-util-gfm-footnote2.1.0间接
npmmdast-util-gfm-strikethrough2.0.0间接
npmmdast-util-gfm-table2.0.0间接
npmmdast-util-gfm-task-list-item2.0.0间接
npmmdast-util-mdx-expression2.0.1间接
npmmdast-util-mdx-jsx3.2.0间接
npmmdast-util-mdxjs-esm2.0.1间接
npmmdast-util-phrasing4.1.0间接
npmmdast-util-to-hast13.2.1间接
npmmdast-util-to-markdown2.1.2间接
npmmdast-util-to-string4.0.0间接
npmmedia-typer1.1.0间接
npmmerge-descriptors2.0.0间接
npmmicromark4.0.2间接
npmmicromark-core-commonmark2.0.3间接
npmmicromark-extension-gfm3.0.0间接
npmmicromark-extension-gfm-autolink-literal2.1.0间接
npmmicromark-extension-gfm-footnote2.1.0间接
npmmicromark-extension-gfm-strikethrough2.1.0间接
npmmicromark-extension-gfm-table2.1.1间接
npmmicromark-extension-gfm-tagfilter2.0.0间接
npmmicromark-extension-gfm-task-list-item2.1.0间接
npmmicromark-factory-destination2.0.1间接
npmmicromark-factory-label2.0.1间接
npmmicromark-factory-space2.0.1间接
npmmicromark-factory-title2.0.1间接
npmmicromark-factory-whitespace2.0.1间接
npmmicromark-util-character2.1.1间接
npmmicromark-util-chunked2.0.1间接
npmmicromark-util-classify-character2.0.1间接
npmmicromark-util-combine-extensions2.0.1间接
npmmicromark-util-decode-numeric-character-reference2.0.2间接
npmmicromark-util-decode-string2.0.1间接
npmmicromark-util-encode2.0.1间接
npmmicromark-util-html-tag-name2.0.1间接
npmmicromark-util-normalize-identifier2.0.1间接
npmmicromark-util-resolve-all2.0.1间接
npmmicromark-util-sanitize-uri2.0.1间接
npmmicromark-util-subtokenize2.1.0间接
npmmicromark-util-symbol2.0.1间接
npmmicromark-util-types2.0.2间接
npmmime-db1.54.0间接
npmmime-types3.0.2间接
npmmoment2.30.1间接
npmms2.0.0间接
npmms2.1.3间接
npmmutative1.3.0间接
npmnanoid3.3.12间接
npmnegotiator0.6.4间接
npmnegotiator1.0.0间接
npmobject-assign4.1.1间接
npmobject-inspect1.13.4间接
npmon-finished2.4.1间接
npmon-headers1.1.0间接
npmonce1.4.0间接
npmpackage-name-regex2.0.6间接
npmparse-entities4.0.2间接
npmparseurl1.3.3间接
npmpath-to-regexp8.4.2间接
npmpicocolors1.1.1间接
npmpicomatch4.0.4间接
npmpostcss8.5.15间接
npmproperty-information7.1.0间接
npmproxy-addr2.0.7间接
npmqs6.15.2间接
npmrange-parser1.2.1间接
npmraw-body3.0.2间接
npmreact-markdown10.1.0间接
npmremark-gfm4.0.1间接
npmremark-parse11.0.0间接
npmremark-rehype11.1.2间接
npmremark-stringify11.0.0间接
npmrolldown1.0.3间接
npmrollup4.60.4间接
npmrollup-plugin-license3.7.1间接
npmrouter2.2.0间接
npmrxjs7.8.2间接
npmsafe-buffer5.2.1间接
npmsafer-buffer2.1.2间接
npmscheduler0.27.0间接
npmsend1.2.1间接
npmserve-static2.2.1间接
npmsetprototypeof1.2.0间接
npmside-channel1.1.0间接
npmside-channel-list1.0.1间接
npmside-channel-map1.0.1间接
npmside-channel-weakmap1.0.2间接
npmsource-map-js1.2.1间接
npmspace-separated-tokens2.0.2间接
npmspdx-compare1.0.0间接
npmspdx-exceptions2.5.0间接
npmspdx-expression-parse3.0.1间接
npmspdx-expression-validate2.0.0间接
npmspdx-license-ids3.0.23间接
npmspdx-ranges2.1.1间接
npmspdx-satisfies5.0.1间接
npmstatuses2.0.2间接
npmstringify-entities4.0.4间接
npmstyle-to-js1.1.21间接
npmstyle-to-object1.0.14间接
npmswagger-ui-dist5.32.6间接
npmtinyglobby0.2.17间接
npmtoidentifier1.0.1间接
npmtrim-lines3.0.1间接
npmtrough2.2.0间接
npmtslib2.8.1间接
npmtype-is2.1.0间接
npmtypescript5.9.3间接
npmundici-types6.21.0间接
npmundici-types7.16.0间接
npmunified11.0.5间接
npmunist-util-is6.0.1间接
npmunist-util-position5.0.0间接
npmunist-util-stringify-position4.0.0间接
npmunist-util-visit5.1.0间接
npmunist-util-visit-parents6.0.2间接
npmunpipe1.0.0间接
npmvary1.1.2间接
npmvfile6.0.3间接
npmvfile-message4.0.3间接
npmvite8.0.16间接
npmwrappy1.0.2间接
npmzwitch2.0.4间接
PyPIcython间接
PyPIipython间接
PyPInvidia-cuda-cupti-cu12间接
PyPInvidia-cuda-nvcc-cu12间接
PyPInvidia-cuda-nvrtc-cu12间接
PyPInvidia-cuda-runtime-cu12间接
PyPInvidia-nvjitlink-cu12间接
PyPIopenmm间接
PyPIpytest间接
PyPIscipy间接
PyPIsetuptools-scm间接
依赖安全公告 0

该仓库未发布可被索引解析的包,因此评估的是其自身的依赖图——共 296 个包,其中也包含从不交付的开发与测试版本固定:0 个存在已知公告,0 个为直接依赖。 有 16 个无法评估——没有已解析的版本、生态系统不受支持,或不在所列包清单之内。

没有已知公告影响已评估的依赖。

公告表示依赖图中记录的版本落入某条公告的受影响范围。可达性未经分析,且依赖图包含开发与测试的版本固定——某项发现可能只涉及工具链而非交付的软件。

原始 JSON 报告 机器可读
{
  "data": {
    "repo": {
      "topics": [
        "molecule",
        "machine-learning",
        "proteins",
        "drug-discovery",
        "molecular-modeling",
        "molecular-simulation"
      ],
      "is_fork": false,
      "size_kb": 128870,
      "has_wiki": true,
      "homepage": null,
      "languages": {
        "C": 215907,
        "C++": 297159,
        "HTML": 13051,
        "Shell": 5426,
        "Cython": 238149,
        "Python": 2236334,
        "Makefile": 581,
        "Batchfile": 244,
        "Dockerfile": 3836,
        "TypeScript": 35229,
        "Jupyter Notebook": 7248,
        "Rich Text Format": 1489
      },
      "pushed_at": "2026-07-24T13:41:02Z",
      "created_at": "2019-03-28T10:51:36Z",
      "owner_type": "Organization",
      "updated_at": "2026-07-24T13:41:57Z",
      "description": "MoleculeKit: Your favorite molecule manipulation kit",
      "is_archived": false,
      "is_disabled": false,
      "license_spdx": null,
      "default_branch": "main",
      "license_spdx_raw": "NOASSERTION",
      "primary_language": "Python",
      "significant_languages": [
        "Python"
      ]
    },
    "owner": {
      "blog": "https://www.acellera.com",
      "name": "Acellera",
      "type": "Organization",
      "login": "Acellera",
      "company": null,
      "location": "London, Barcelona",
      "followers": 67,
      "avatar_url": "https://avatars.githubusercontent.com/u/7776839?v=4",
      "created_at": "2014-06-03T05:17:26Z",
      "is_verified": null,
      "public_repos": 38,
      "account_age_days": 4434
    },
    "license": {
      "state": "custom",
      "spdx_id": null,
      "raw_spdx": "NOASSERTION",
      "file_present": true,
      "scorecard_found": true,
      "profile_has_license": true
    },
    "activity": {
      "releases": [
        {
          "tag": "v1.15.6",
          "kind": "patch",
          "published_at": "2026-07-22T08:11:41Z"
        },
        {
          "tag": "v1.15.5",
          "kind": "patch",
          "published_at": "2026-07-21T07:32:36Z"
        },
        {
          "tag": "v1.15.4",
          "kind": "patch",
          "published_at": "2026-07-20T11:20:38Z"
        },
        {
          "tag": "v1.15.3",
          "kind": "patch",
          "published_at": "2026-07-16T13:08:31Z"
        },
        {
          "tag": "v1.15.2",
          "kind": "patch",
          "published_at": "2026-07-16T12:14:03Z"
        },
        {
          "tag": "v1.15.1",
          "kind": "patch",
          "published_at": "2026-07-14T14:23:09Z"
        },
        {
          "tag": "v1.15.0",
          "kind": "minor",
          "published_at": "2026-07-02T11:17:54Z"
        },
        {
          "tag": "v1.14.10",
          "kind": "patch",
          "published_at": "2026-07-02T09:45:53Z"
        },
        {
          "tag": "v1.14.9",
          "kind": "patch",
          "published_at": "2026-06-29T11:35:25Z"
        },
        {
          "tag": "v1.14.8",
          "kind": "patch",
          "published_at": "2026-06-25T12:18:44Z"
        },
        {
          "tag": "v1.14.7",
          "kind": "patch",
          "published_at": "2026-06-24T13:57:35Z"
        },
        {
          "tag": "v1.14.6",
          "kind": "patch",
          "published_at": "2026-06-19T14:14:37Z"
        },
        {
          "tag": "v1.14.5",
          "kind": "patch",
          "published_at": "2026-06-16T07:46:04Z"
        },
        {
          "tag": "v1.14.4",
          "kind": "patch",
          "published_at": "2026-06-11T12:18:12Z"
        },
        {
          "tag": "v1.14.3",
          "kind": "patch",
          "published_at": "2026-06-08T12:35:26Z"
        },
        {
          "tag": "v1.14.2",
          "kind": "patch",
          "published_at": "2026-06-06T09:25:55Z"
        },
        {
          "tag": "v1.14.1",
          "kind": "patch",
          "published_at": "2026-06-02T16:54:51Z"
        },
        {
          "tag": "v1.14.0",
          "kind": "minor",
          "published_at": "2026-05-25T18:01:13Z"
        },
        {
          "tag": "v1.13.6",
          "kind": "patch",
          "published_at": "2026-05-22T12:57:38Z"
        },
        {
          "tag": "v1.13.5",
          "kind": "patch",
          "published_at": "2026-05-22T08:26:36Z"
        },
        {
          "tag": "v1.13.4",
          "kind": "patch",
          "published_at": "2026-05-21T14:51:50Z"
        },
        {
          "tag": "v1.13.3",
          "kind": "patch",
          "published_at": "2026-05-21T09:59:46Z"
        },
        {
          "tag": "v1.13.2",
          "kind": "patch",
          "published_at": "2026-05-20T13:05:52Z"
        },
        {
          "tag": "v1.13.1",
          "kind": "patch",
          "published_at": "2026-05-19T12:09:42Z"
        },
        {
          "tag": "v1.13.0",
          "kind": "minor",
          "published_at": "2026-05-18T16:18:17Z"
        },
        {
          "tag": "v1.12.2",
          "kind": "patch",
          "published_at": "2026-05-12T09:59:06Z"
        },
        {
          "tag": "v1.12.1",
          "kind": "patch",
          "published_at": "2026-05-12T07:58:34Z"
        },
        {
          "tag": "v1.12.0",
          "kind": "minor",
          "published_at": "2026-05-04T14:57:20Z"
        },
        {
          "tag": "v1.11.15",
          "kind": "patch",
          "published_at": "2026-04-28T08:23:57Z"
        },
        {
          "tag": "v1.11.14",
          "kind": "patch",
          "published_at": "2026-04-23T08:59:21Z"
        },
        {
          "tag": "v1.11.13",
          "kind": "patch",
          "published_at": "2026-04-08T11:49:02Z"
        },
        {
          "tag": "v1.11.11",
          "kind": "patch",
          "published_at": "2026-04-02T15:17:25Z"
        },
        {
          "tag": "v1.11.10",
          "kind": "patch",
          "published_at": "2026-03-31T14:29:18Z"
        },
        {
          "tag": "v1.11.9",
          "kind": "patch",
          "published_at": "2026-03-30T10:29:20Z"
        },
        {
          "tag": "v1.11.8",
          "kind": "patch",
          "published_at": "2026-03-26T10:28:09Z"
        },
        {
          "tag": "v1.11.7",
          "kind": "patch",
          "published_at": "2026-03-26T09:53:22Z"
        },
        {
          "tag": "v1.11.6",
          "kind": "patch",
          "published_at": "2026-03-24T16:11:53Z"
        },
        {
          "tag": "v1.11.5",
          "kind": "patch",
          "published_at": "2026-03-11T08:37:53Z"
        },
        {
          "tag": "v1.11.1",
          "kind": "patch",
          "published_at": "2025-12-12T10:01:01Z"
        },
        {
          "tag": "v1.11.0",
          "kind": "minor",
          "published_at": "2025-12-04T13:38:53Z"
        },
        {
          "tag": "v1.10.12",
          "kind": "patch",
          "published_at": "2025-11-27T15:08:23Z"
        },
        {
          "tag": "v1.10.10",
          "kind": "patch",
          "published_at": "2025-11-25T12:02:32Z"
        },
        {
          "tag": "v1.10.9",
          "kind": "patch",
          "published_at": "2025-11-20T14:28:05Z"
        },
        {
          "tag": "v1.10.8",
          "kind": "patch",
          "published_at": "2025-11-17T12:35:26Z"
        },
        {
          "tag": "v1.10.7",
          "kind": "patch",
          "published_at": "2025-11-14T16:15:00Z"
        },
        {
          "tag": "v1.10.6",
          "kind": "patch",
          "published_at": "2025-11-13T14:45:53Z"
        },
        {
          "tag": "v1.10.5",
          "kind": "patch",
          "published_at": "2025-10-21T09:35:09Z"
        },
        {
          "tag": "v1.10.4",
          "kind": "patch",
          "published_at": "2025-09-10T10:37:59Z"
        },
        {
          "tag": "v1.10.3",
          "kind": "patch",
          "published_at": "2025-06-24T07:35:19Z"
        },
        {
          "tag": "v1.10.2",
          "kind": "patch",
          "published_at": "2025-06-19T12:14:04Z"
        },
        {
          "tag": "v1.10.1",
          "kind": "patch",
          "published_at": "2025-06-18T11:03:31Z"
        },
        {
          "tag": "v1.10.0",
          "kind": "minor",
          "published_at": "2025-06-18T08:24:22Z"
        },
        {
          "tag": "v1.9.37",
          "kind": "patch",
          "published_at": "2025-06-03T09:32:28Z"
        },
        {
          "tag": "v1.9.36",
          "kind": "patch",
          "published_at": "2025-05-09T08:42:06Z"
        },
        {
          "tag": "v1.9.35",
          "kind": "patch",
          "published_at": "2025-04-03T13:59:02Z"
        },
        {
          "tag": "v1.9.34",
          "kind": "patch",
          "published_at": "2025-04-02T14:49:18Z"
        },
        {
          "tag": "v1.9.33",
          "kind": "patch",
          "published_at": "2025-03-31T13:41:03Z"
        },
        {
          "tag": "v1.9.32",
          "kind": "patch",
          "published_at": "2025-03-21T10:15:43Z"
        }
      ],
      "recent_commits": [
        {
          "oid": "48f1c18e7f745413037db098314de13549b5a02f",
          "body": null,
          "is_bot": false,
          "headline": "preserve lipid bonds in systemPrepare",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-24T13:40:37Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6c93fbe8779545c4da0ea7dc15befe1cf6242356",
          "body": null,
          "is_bot": false,
          "headline": "autosegment now has a lipid bucket",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-24T12:41:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0047290f89d134ec4006bfcc8bae05af15174960",
          "body": null,
          "is_bot": false,
          "headline": "skip lipids in nonstandard detection",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-24T12:16:23Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a0e09818f60c1644053a0db8e6b49e7f0ecbfffa",
          "body": null,
          "is_bot": false,
          "headline": "safety check in stamping",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-24T11:49:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9f7b44a4ca8bb363c06d75a19f13ffd3fd22113b",
          "body": null,
          "is_bot": false,
          "headline": "make systemPrepare not truncate 4-char resnames like POPC etc",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-24T11:40:13Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3106f3985ad6f394cb92c67ab8668536fd1fbfb0",
          "body": null,
          "is_bot": false,
          "headline": "backfilling missing chains from segid",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-24T10:38:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "241c445c1a6004d5ac2db74c3fdb8443dcf0eef4",
          "body": null,
          "is_bot": false,
          "headline": "updated docs",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-22T13:49:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6a661664422f1f82fa04e12c3d1cf5a7df756620",
          "body": null,
          "is_bot": false,
          "headline": "CCD4 cif dialect support",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-22T09:54:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "80bd0a7e7d4e85548a4b52c6883fd8fd7cebeae5",
          "body": null,
          "is_bot": false,
          "headline": "minor check",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-22T07:33:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "715ed8fecf46f2e647714885e0890ffeb57228ac",
          "body": null,
          "is_bot": false,
          "headline": "Merge branch 'main' of github.com:Acellera/moleculekit",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-22T07:14:14Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "966b00b6dafda7ad6c5685123a0a89a8859ddb8f",
          "body": null,
          "is_bot": false,
          "headline": "updated the hydrogen positions in the test files",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-22T07:13:47Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "055607cad9a2cfce6be180f173a3607633bcf054",
          "body": "Bumps [immutable](https://github.com/immutable-js/immutable-js) from 5.1.5 to 5.1.9.\n- [Release notes](https://github.com/immutable-js/immutable-js/releases)\n- [Changelog](https://github.com/immutable-js/immutable-js/blob/main/CHANGELOG.md)\n- [Commits](https://github.com/immutable-js/immutable-js/co\n[…]\nble\n  dependency-version: 5.1.9\n  dependency-type: indirect\n...\n\nSigned-off-by: dependabot[bot] <support@github.com>\nCo-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>",
          "is_bot": true,
          "headline": "Bump immutable from 5.1.5 to 5.1.9 in /viewer-frontend (#153)",
          "author_name": "dependabot[bot]",
          "author_login": "dependabot[bot]",
          "committed_at": "2026-07-22T06:55:45Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "1f8eeaf1584fd77956243bc28d3f39f0b116e877",
          "body": "Bumps [body-parser](https://github.com/expressjs/body-parser) from 2.2.2 to 2.3.0.\n- [Release notes](https://github.com/expressjs/body-parser/releases)\n- [Changelog](https://github.com/expressjs/body-parser/blob/master/HISTORY.md)\n- [Commits](https://github.com/expressjs/body-parser/compare/v2.2.2..\n[…]\nser\n  dependency-version: 2.3.0\n  dependency-type: indirect\n...\n\nSigned-off-by: dependabot[bot] <support@github.com>\nCo-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>",
          "is_bot": true,
          "headline": "Bump body-parser from 2.2.2 to 2.3.0 in /viewer-frontend (#152)",
          "author_name": "dependabot[bot]",
          "author_login": "dependabot[bot]",
          "committed_at": "2026-07-22T06:53:00Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "78fcb97aefab495849e70568e5e47945c5be41d9",
          "body": null,
          "is_bot": false,
          "headline": "better loop splicing",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-21T14:46:05Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ef78fdc67472ad598682be06b321d649b8d2f3d8",
          "body": null,
          "is_bot": false,
          "headline": "preliminary fixes in modelling",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-21T10:30:23Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "26527cae83cac2a29c6fd7e50c17434a1fa01f48",
          "body": "…to account external bonds",
          "is_bot": false,
          "headline": "more correct hydrogen placement when templating residues by taking in…",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-21T10:14:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "746db536f67ca0decd2f83fd6f0e03e2dcbbf085",
          "body": "…rom each flank as well",
          "is_bot": false,
          "headline": "fix backbone carboxylate. improve gap modelling by taking a residue f…",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-21T06:59:08Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c4a01542bc4a1dc5e73e3538b2ecc0b8e5a88c7d",
          "body": null,
          "is_bot": false,
          "headline": "improved loop modelling and titration helpers",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-20T10:31:16Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "bdf1b01c8071b516de69205ccf558ba2a6f7afd5",
          "body": null,
          "is_bot": false,
          "headline": "performance improvement to dihedralToIndexes",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-16T12:43:06Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3e94e1e2b5851fdf4c739dea3be1132f9ac15c9b",
          "body": null,
          "is_bot": false,
          "headline": "don't document hidden args",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-16T12:09:56Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "bcf12a838b34987508360194cff57e8118c69e41",
          "body": null,
          "is_bot": false,
          "headline": "systemPrepare adds correct backbone terminals for non-canonical AAs",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-16T11:44:48Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "10987d58933b86d00a03d8d42d0c3eabdd8649f1",
          "body": null,
          "is_bot": false,
          "headline": "capping of residue SMILES for passing them to pKa predictors like AcePka",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-16T07:41:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ed011b82ee585be23c8c8ff6dce40cebea11767f",
          "body": null,
          "is_bot": false,
          "headline": "fix autosegment's issue with metal ions",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-16T07:40:56Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b8f97c963af58786f414b25dc3ec88ad43baf6ca",
          "body": null,
          "is_bot": false,
          "headline": "helpers for getting residues requiring templating",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-14T13:54:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9f00c56fd764e1f72f64231d31df039463ac0185",
          "body": null,
          "is_bot": false,
          "headline": "don't document hidden args",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-14T10:36:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "592b25e4b4f885e1ac062a1002d6cfe3937652f5",
          "body": null,
          "is_bot": false,
          "headline": "tests for that function",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-14T10:19:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f4428363c6676443adfd04cc0b14601c25ed7e73",
          "body": null,
          "is_bot": false,
          "headline": "function for canonicalizing atom names in residues",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-14T10:19:25Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "eb2057109a301045830ae4f788babcf4a7155ea1",
          "body": null,
          "is_bot": false,
          "headline": "compressed opm_sequences better to reduce package size",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-02T10:50:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5a682ebefcbe03e043e421e28720fe3b871f3f9c",
          "body": null,
          "is_bot": false,
          "headline": "strip debug symbols to reduce package size",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-02T09:56:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ca9c2b46fe335319afeba0676a4956241b78f5f4",
          "body": null,
          "is_bot": false,
          "headline": "correctly protonated phospho residue templates for pH7.4",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-07-02T08:41:12Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f00523adee3dd2e229853b093369cdb964fd292a",
          "body": null,
          "is_bot": false,
          "headline": "consolidated cap residue names",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-29T11:08:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "048961d6d89632e277a11c27dd4b7a2379f86a9e",
          "body": null,
          "is_bot": false,
          "headline": "autosegment add caps to same segment as the protein",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-29T10:23:46Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "96bd86aa3ffb97dc23a4d3503a589c10b95b671a",
          "body": null,
          "is_bot": false,
          "headline": "support for backbone-C acyl donor",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-25T11:47:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3867bd94f75453aa8d2a3ef43a9a7088cb4b0829",
          "body": null,
          "is_bot": false,
          "headline": "acyl-donor amide support",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-25T11:09:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7462cabb8ac40ab1d722aad0e7e439fc31af3422",
          "body": null,
          "is_bot": false,
          "headline": "popular modified AAs",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-25T10:19:00Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3b2148a76bef7cdacfb3e87e4fffa418491a31fa",
          "body": null,
          "is_bot": false,
          "headline": "modified nucleic residue support in systemPrepare",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-25T09:55:45Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b0ceec977336a91b7acefae3943fee4229efbce9",
          "body": null,
          "is_bot": false,
          "headline": "correct handling of cross-linked modified AAs",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-25T07:59:46Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c4b0fe0f44768b5810bc08d59c127ca4a843938e",
          "body": null,
          "is_bot": false,
          "headline": "HYP SMILES",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-25T07:59:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "427b58380a423d7223875cafc40f4f96c8381134",
          "body": null,
          "is_bot": false,
          "headline": "correctly updated test files",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-24T13:32:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1ad8aaba9c51cdbf4884ed83a74e58c46310ab75",
          "body": "… templating",
          "is_bot": false,
          "headline": "systemPrepare now protonates correctly modified AAs without requiring…",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-24T13:16:38Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3c1ff9e6e2bf983dd5ea07a1e4379f2f019c4130",
          "body": null,
          "is_bot": false,
          "headline": "fix pydoclint issue",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-24T09:19:38Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "433aebbdb031d2a89665eb9381327d1a10ed3fc4",
          "body": "…ited bonds",
          "is_bot": false,
          "headline": "better detecting of cross-residue bonds both by distance and by depos…",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-24T08:57:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8493c099811b186b44956a8477a245d415c59ca3",
          "body": null,
          "is_bot": false,
          "headline": "fixes to pdb2pqr and termini detection. using now acellera-pdb2pqr",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-23T13:31:14Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "72a74cf239f76c5108d7f7333381fa951012d643",
          "body": null,
          "is_bot": false,
          "headline": "test for isopeptide terminal marking",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-23T12:10:24Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b58b8e00fe05002de9f655cde28b2a2c1b230028",
          "body": null,
          "is_bot": false,
          "headline": "respect user sel in _get_sequence",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-23T12:09:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9e1ead5837a15d62db348cd270d9e2dbd3c301dc",
          "body": "…s (3-5 atoms)",
          "is_bot": false,
          "headline": "accept in systemPrepare also custom residues with beta/gamma backbone…",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-23T12:08:40Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e98784d0b2e4118cc4ca0d3dbe8534e0a47f43a2",
          "body": "… not just N-C",
          "is_bot": false,
          "headline": "fix in detect so any bond out of N/C makes a residue be non-terminal,…",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-23T12:08:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8f064c2482b4054830e5d618149f2232bd67f813",
          "body": "…an find also interresidue backbone bonds which are not N-C",
          "is_bot": false,
          "headline": "improved autosegment which renumbers ions if a collision exists and c…",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-23T12:07:13Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0ef861c7c373038d5fa8b2d0f09dced1e3da2d29",
          "body": null,
          "is_bot": false,
          "headline": "fetching residue SMILES",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-22T09:42:43Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "243f0b05a55bbcaba9197967682c5c280aaeb214",
          "body": null,
          "is_bot": false,
          "headline": "tests",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-22T08:44:48Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c874244752dc418145a0edef747e4c5b54a6008f",
          "body": "…de-chain atoms",
          "is_bot": false,
          "headline": "normalizing strecthed cyclic closures and better error for missing si…",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-22T08:44:14Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5b851fe295daad873e917576434ccef9b171ba04",
          "body": null,
          "is_bot": false,
          "headline": "supporting backbone N anchors",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-22T08:43:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d3cbea1381f3b4d05bd0275a98395202f78b39a0",
          "body": null,
          "is_bot": false,
          "headline": "cleanup",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-19T13:38:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a4b76064f8512e5588b6d5599e921f1be8720e8b",
          "body": null,
          "is_bot": false,
          "headline": "fix",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-19T13:37:25Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4c0e6cbb3f99b896a198eb6c7258bb19c79afdd7",
          "body": null,
          "is_bot": false,
          "headline": "Merge branch 'main' of github.com:Acellera/moleculekit",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-19T13:36:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "21b128b967265d1661797a075879c22c4d1bf958",
          "body": "…rdination bonds",
          "is_bot": false,
          "headline": "handling of glycine metabolites and fixing the detection of metal coo…",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-19T13:36:23Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ac25280a7d9dcb2df5659199cd7b9de73077e82c",
          "body": "Bumps [vite](https://github.com/vitejs/vite/tree/HEAD/packages/vite) from 8.0.14 to 8.0.16.\n- [Release notes](https://github.com/vitejs/vite/releases)\n- [Changelog](https://github.com/vitejs/vite/blob/main/packages/vite/CHANGELOG.md)\n- [Commits](https://github.com/vitejs/vite/commits/v8.0.16/package\n[…]\ndency-version: 8.0.16\n  dependency-type: direct:development\n...\n\nSigned-off-by: dependabot[bot] <support@github.com>\nCo-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>",
          "is_bot": true,
          "headline": "Bump vite from 8.0.14 to 8.0.16 in /viewer-frontend (#151)",
          "author_name": "dependabot[bot]",
          "author_login": "dependabot[bot]",
          "committed_at": "2026-06-17T05:51:09Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "56636fa8185f07fafee5710513a16947e222a5b1",
          "body": "…er error messages",
          "is_bot": false,
          "headline": "disabling bond-guessing in detection of nonstandard residues and bett…",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-16T07:17:39Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d446fd42e3b06c21ab79f7e1663af815fc72f919",
          "body": null,
          "is_bot": false,
          "headline": "added support for templating a residue through an SDF file",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-11T11:50:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "027d9a8d4106f06a169af579074ebba3f737d198",
          "body": null,
          "is_bot": false,
          "headline": "for conda install propka official",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-08T12:10:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d48cf44857c1370787340bf824a188f22aa80b06",
          "body": null,
          "is_bot": false,
          "headline": "fix docs",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-08T11:52:46Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "52eabc264161cbae2b35c47fbfebb91c20261b3a",
          "body": null,
          "is_bot": false,
          "headline": "added method for templating residues from a Molecule object",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-08T11:39:45Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "bf0a8510d009782df655d56db71330da6e05eea8",
          "body": null,
          "is_bot": false,
          "headline": "skip tests which require molviewspec",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-06T08:59:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e1ff3a57b96ed379837aa46f1f8487f74c1aff45",
          "body": null,
          "is_bot": false,
          "headline": "flake8 settings",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-05T13:20:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7445ef7718c99864c9c50803757f4ae99cac42fc",
          "body": null,
          "is_bot": false,
          "headline": "fix a few types",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-05T13:16:12Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ff38eb64a2c00df79c7e81ddf9f1343e2db0b454",
          "body": null,
          "is_bot": false,
          "headline": "massive update to docstrings and function types",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-05T13:00:03Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e511b160df21f8705b8012e3dfee45aeaba1b028",
          "body": null,
          "is_bot": false,
          "headline": "try to fix the ports issue",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-05T09:29:24Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4f50cf2ab6ac243b0f4b3498dc5ffeb4b5b624b2",
          "body": null,
          "is_bot": false,
          "headline": "fix issue with shutdown of molstar server",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-04T14:09:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cfa630f53baf0d86b81d07d02c14d7d586e3e1cb",
          "body": null,
          "is_bot": false,
          "headline": "added inline jupyter molstar viewer",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-04T13:12:56Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "199e88d87fca5e4ccab418a98cefb1bcc42e4421",
          "body": null,
          "is_bot": false,
          "headline": "updated the test deps",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-04T10:35:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b92a5b5440ebb3e1ed87edf2a4085009b5622454",
          "body": null,
          "is_bot": false,
          "headline": "updated tutorials",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-04T09:42:54Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "90133e358fbea3ec248e503d1562d5a56bce443f",
          "body": null,
          "is_bot": false,
          "headline": "pyodide docker build",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-03T16:44:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0176f82e74b2c5eef6829a27be3d435e6ea77da3",
          "body": null,
          "is_bot": false,
          "headline": "missing file",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-03T16:44:42Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "34c8532e97e95a9d6c33cb2b152dc27fc9374c51",
          "body": null,
          "is_bot": false,
          "headline": "updated docs",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-03T16:28:35Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "37db397c4494fd76eaaa1f290b9a5df0a4132175",
          "body": null,
          "is_bot": false,
          "headline": "added wrapping tutorial",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-02T09:10:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2ccaf1feba35af9fb9c30d60b3e33f71e3b1f083",
          "body": null,
          "is_bot": false,
          "headline": "slightly prettier chain report",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-01T08:46:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "159bd95c1a4323c37aca2b1e89e5971843c92d0d",
          "body": null,
          "is_bot": false,
          "headline": "fixed test function names",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-06-01T06:12:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0fca0a1c954e0cc3fe2ff79ba71ad1495e78716f",
          "body": null,
          "is_bot": false,
          "headline": "updated autosegmentation",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-29T13:11:53Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e78e1aa099b5ef5a40455592c40faadad8aee60a",
          "body": null,
          "is_bot": false,
          "headline": "updated to biopython latest alignment functions",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-29T08:43:23Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "40d637277946a4646cc6fc29757e56551e3eb12b",
          "body": null,
          "is_bot": false,
          "headline": "minor cleanup",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-29T08:11:25Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "77ee27cf0ceb869081573749d835118eb04d0191",
          "body": null,
          "is_bot": false,
          "headline": "minor QOL fixes",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-27T14:04:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "70afff32d7aa9e881fde606893225daf979d38dc",
          "body": null,
          "is_bot": false,
          "headline": "updating the docs",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-27T14:00:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8e8a1a4b1e1a5a50e9dd7985b678f24dd763c0ad",
          "body": null,
          "is_bot": false,
          "headline": "fixed the docs",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-27T13:37:35Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5d05aeddc681f29d09b2ebab7a6e6782a86e8179",
          "body": null,
          "is_bot": false,
          "headline": "use the acellera docs theme",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-26T15:17:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "08117082facb3afa0e72db54810492bc521f59a9",
          "body": null,
          "is_bot": false,
          "headline": "fix overflow on bond guesser",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-26T13:28:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3044a9c831042176e6c571c86f51dcf1e259808d",
          "body": null,
          "is_bot": false,
          "headline": "version bumps",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-26T09:51:42Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ff40f0c7a628b0ba34ca7e5694db2b2d8c26ca4b",
          "body": null,
          "is_bot": false,
          "headline": "version bumps",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-26T09:50:05Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d64eb438fb9df96839736318a574ffaf3389d972",
          "body": null,
          "is_bot": false,
          "headline": "fixed the header",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-26T09:45:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0379a09f7079e24c1eb6508796b8af108d2a22d1",
          "body": null,
          "is_bot": false,
          "headline": "fixed docs a bit more",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-26T09:08:50Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1a4c689a0f282772c3272ab3b5602079f0a57981",
          "body": null,
          "is_bot": false,
          "headline": "publish on workflow trigger",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-26T08:36:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cbe49c56d5ed5beaf2f7c643bc22668015313e63",
          "body": null,
          "is_bot": false,
          "headline": "generate HTML docs directly and push them to the docs bucket with rsync",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-26T08:28:55Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "47e1ec5c7210942e1631975dd82a9fdbc35bc364",
          "body": "…ered in CI\n\nWithout ipykernel, NotebookClient (used by tests/test_tutorials.py and\nby myst-nb at doc-build time) fails with\n\n  jupyter_client.kernelspec.NoSuchKernel: No such kernel named python3\n\non a fresh CI venv. Locally ipykernel happens to be present via some\ntransitive install chain, but no \n[…]\ny, so a clean uv sync misses it.\n\nPutting it in the test group covers both consumers — the test job\nalready installs the test group, and the docs-validate job does\n`uv sync --group docs --group test`.",
          "is_bot": false,
          "headline": "test: add ipykernel to the test group so the python3 kernel is regist…",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-26T06:41:04Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "3ec2ce5d36fcdf6fa53a9e642076df5f0e60b445",
          "body": null,
          "is_bot": false,
          "headline": "updated docs",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-25T17:35:25Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4442b25f1481e126f93d175cba444e3fc68c11f2",
          "body": null,
          "is_bot": false,
          "headline": "gitignore for viewer",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-25T12:44:25Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7cf0a1e0036d6501bf208c75843f692ad5d3361f",
          "body": null,
          "is_bot": false,
          "headline": "moleculekit's own molstar viewer",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-25T12:33:57Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2a742681ecf54dfbbb5796ba7aca343b1849b7f9",
          "body": null,
          "is_bot": false,
          "headline": "more correct message",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-25T08:14:00Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "53212671be447519a07790e9aa9f216aa986b7c1",
          "body": "…onversion",
          "is_bot": false,
          "headline": "allow multi-residue Molecule to rdkit conversion and improve OpenFF c…",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-25T07:46:47Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7d8c6070bf2ec39768bb4870fc84d3ade5a2b4bd",
          "body": null,
          "is_bot": false,
          "headline": "a bit less warning spam from systemPrepare",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-22T12:21:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7f09324a18c64d0c45596b60392ae7a62e8fed2d",
          "body": null,
          "is_bot": false,
          "headline": "added metal coordination bond reading. updated preparation accordingly",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-22T12:03:37Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "770db073456cb0b9727a5197bce6e1fe535fd75d",
          "body": null,
          "is_bot": false,
          "headline": "increase floating point precision of charges in mol2 files",
          "author_name": "Stefan Doerr",
          "author_login": "stefdoerr",
          "committed_at": "2026-05-22T07:48:56Z",
          "body_truncated": false,
          "is_coding_agent": false
        }
      ],
      "releases_count": 58,
      "commits_last_year": 227,
      "latest_release_at": "2026-07-22T08:11:41Z",
      "latest_release_tag": "v1.15.6",
      "releases_from_tags": false,
      "days_since_last_push": 0,
      "active_weeks_last_year": 27,
      "days_since_latest_release": 2,
      "mean_days_between_releases": 3
    },
    "community": {
      "has_readme": true,
      "has_license": true,
      "has_description": true,
      "has_contributing": false,
      "health_percentage": 37,
      "has_issue_template": false,
      "has_code_of_conduct": false,
      "has_pull_request_template": false
    },
    "ecosystem": {
      "packages": [
        {
          "name": "moleculekit",
          "exists": true,
          "license": null,
          "keywords": [
            "Operating System :: POSIX :: Linux",
            "Programming Language :: Python :: 3"
          ],
          "ecosystem": "pypi",
          "matches_repo": true,
          "registry_url": "https://pypi.org/project/moleculekit/",
          "is_deprecated": false,
          "latest_version": "1.15.7",
          "repository_url": "https://github.com/Acellera/moleculekit",
          "versions_count": 254,
          "total_downloads": null,
          "dependents_count": null,
          "deprecation_note": null,
          "maintainers_count": null,
          "monthly_downloads": 14341,
          "first_published_at": "2019-07-19T13:42:53.622264Z",
          "latest_published_at": "2026-07-24T14:05:24.692686Z",
          "latest_version_yanked": null,
          "days_since_latest_publish": 0
        },
        {
          "name": "molkitten",
          "exists": true,
          "license": null,
          "keywords": [
            "Operating System :: POSIX :: Linux",
            "Programming Language :: Python :: 3"
          ],
          "ecosystem": "pypi",
          "matches_repo": true,
          "registry_url": "https://pypi.org/project/molkitten/",
          "is_deprecated": false,
          "latest_version": "0.0.7",
          "repository_url": "https://github.com/acellera/moleculekit/",
          "versions_count": 1,
          "total_downloads": null,
          "dependents_count": null,
          "deprecation_note": null,
          "maintainers_count": null,
          "monthly_downloads": 94,
          "first_published_at": "2022-08-01T10:34:01.353344Z",
          "latest_published_at": "2022-08-01T10:34:01.353344Z",
          "latest_version_yanked": null,
          "days_since_latest_publish": 1453
        }
      ]
    },
    "popularity": {
      "forks": 35,
      "stars": 237,
      "watchers": 9,
      "fork_history": {
        "days": [
          {
            "date": "2019-05-15",
            "count": 1
          },
          {
            "date": "2019-07-09",
            "count": 1
          },
          {
            "date": "2019-08-07",
            "count": 1
          },
          {
            "date": "2019-09-13",
            "count": 1
          },
          {
            "date": "2020-02-27",
            "count": 1
          },
          {
            "date": "2020-04-17",
            "count": 1
          },
          {
            "date": "2020-04-26",
            "count": 1
          },
          {
            "date": "2020-05-05",
            "count": 1
          },
          {
            "date": "2020-05-22",
            "count": 1
          },
          {
            "date": "2020-05-29",
            "count": 1
          },
          {
            "date": "2020-06-07",
            "count": 1
          },
          {
            "date": "2020-07-28",
            "count": 1
          },
          {
            "date": "2020-08-05",
            "count": 1
          },
          {
            "date": "2020-09-23",
            "count": 1
          },
          {
            "date": "2020-10-04",
            "count": 1
          },
          {
            "date": "2020-10-29",
            "count": 1
          },
          {
            "date": "2021-02-15",
            "count": 1
          },
          {
            "date": "2021-08-18",
            "count": 1
          },
          {
            "date": "2022-02-04",
            "count": 1
          },
          {
            "date": "2022-04-19",
            "count": 1
          },
          {
            "date": "2022-06-27",
            "count": 1
          },
          {
            "date": "2022-07-28",
            "count": 1
          },
          {
            "date": "2022-08-11",
            "count": 1
          },
          {
            "date": "2022-10-28",
            "count": 1
          },
          {
            "date": "2022-11-30",
            "count": 1
          },
          {
            "date": "2023-02-06",
            "count": 1
          },
          {
            "date": "2023-04-05",
            "count": 1
          },
          {
            "date": "2023-06-04",
            "count": 1
          },
          {
            "date": "2023-08-16",
            "count": 1
          },
          {
            "date": "2023-08-22",
            "count": 1
          },
          {
            "date": "2024-08-01",
            "count": 1
          },
          {
            "date": "2024-09-08",
            "count": 1
          },
          {
            "date": "2025-01-07",
            "count": 1
          },
          {
            "date": "2025-07-31",
            "count": 1
          }
        ],
        "complete": true,
        "collected": 34,
        "total_forks": 35
      },
      "star_history": null,
      "open_issues_and_prs": 7
    },
    "ai_readiness": {
      "has_nix": false,
      "example_dirs": [
        "examples",
        "notebooks"
      ],
      "has_llms_txt": true,
      "has_dockerfile": true,
      "has_mcp_signal": false,
      "bootstrap_files": [
        "Makefile",
        "doc/Makefile"
      ],
      "api_schema_files": [],
      "has_devcontainer": false,
      "typecheck_configs": [
        "viewer-frontend/tsconfig.json"
      ],
      "toolchain_manifests": [],
      "largest_source_bytes": 3419873,
      "source_files_sampled": 195,
      "oversized_source_files": 9,
      "agent_instruction_files": [
        "AGENTS.md"
      ],
      "agent_instruction_max_bytes": 9201
    },
    "dependencies": {
      "manifests": [
        "molkitten/setup.py",
        "pyproject.toml",
        "setup.py",
        "viewer-frontend/package.json"
      ],
      "advisories": {
        "error": null,
        "scope": "repository_graph",
        "source": "osv",
        "findings": [],
        "collected": true,
        "malicious": [],
        "truncated": false,
        "by_severity": {},
        "advisory_count": 0,
        "affected_count": 0,
        "assessed_count": 296,
        "malicious_count": 0,
        "assessed_package": null,
        "unassessed_count": 16,
        "direct_affected_count": 0
      },
      "ecosystems": [
        "npm",
        "pypi"
      ],
      "dependencies": [
        {
          "name": "numpy",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=1.23.5"
        },
        {
          "name": "pandas",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=1.1.2"
        },
        {
          "name": "networkx",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": null
        },
        {
          "name": "tqdm",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": null
        },
        {
          "name": "msgpack",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": null
        },
        {
          "name": "requests",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": null
        },
        {
          "name": "matplotlib",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": null
        },
        {
          "name": "rdkit",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=2020.09.5"
        },
        {
          "name": "mdtraj",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": null
        },
        {
          "name": "acellera-propka",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": null
        },
        {
          "name": "acellera-pdb2pqr",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=3.7.1.post1"
        },
        {
          "name": "biopython",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": null
        },
        {
          "name": "molstar",
          "manifest": "viewer-frontend/package.json",
          "ecosystem": "npm",
          "version_constraint": "^5.7.0"
        },
        {
          "name": "react",
          "manifest": "viewer-frontend/package.json",
          "ecosystem": "npm",
          "version_constraint": "^19.2.4"
        },
        {
          "name": "react-dom",
          "manifest": "viewer-frontend/package.json",
          "ecosystem": "npm",
          "version_constraint": "^19.2.4"
        }
      ],
      "all_dependencies": {
        "error": null,
        "source": "github-sbom",
        "packages": [
          {
            "name": "molstar",
            "direct": true,
            "version": "5.9.0",
            "ecosystem": "npm"
          },
          {
            "name": "react",
            "direct": true,
            "version": "19.2.6",
            "ecosystem": "npm"
          },
          {
            "name": "react-dom",
            "direct": true,
            "version": "19.2.6",
            "ecosystem": "npm"
          },
          {
            "name": "acellera-pdb2pqr",
            "direct": true,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "networkx",
            "direct": true,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "numpy",
            "direct": true,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pandas",
            "direct": true,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "rdkit",
            "direct": true,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "@emnapi/core",
            "direct": false,
            "version": "1.10.0",
            "ecosystem": "npm"
          },
          {
            "name": "@emnapi/runtime",
            "direct": false,
            "version": "1.10.0",
            "ecosystem": "npm"
          },
          {
            "name": "@emnapi/wasi-threads",
            "direct": false,
            "version": "1.2.1",
            "ecosystem": "npm"
          },
          {
            "name": "@jridgewell/sourcemap-codec",
            "direct": false,
            "version": "1.5.5",
            "ecosystem": "npm"
          },
          {
            "name": "@napi-rs/wasm-runtime",
            "direct": false,
            "version": "1.1.5",
            "ecosystem": "npm"
          },
          {
            "name": "@oxc-project/types",
            "direct": false,
            "version": "0.133.0",
            "ecosystem": "npm"
          },
          {
            "name": "@rolldown/binding-android-arm64",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "@rolldown/binding-darwin-arm64",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "@rolldown/binding-darwin-x64",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "@rolldown/binding-freebsd-x64",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "@rolldown/binding-linux-arm-gnueabihf",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "@rolldown/binding-linux-arm64-gnu",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "@rolldown/binding-linux-arm64-musl",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "@rolldown/binding-linux-ppc64-gnu",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "@rolldown/binding-linux-s390x-gnu",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "@rolldown/binding-linux-x64-gnu",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "@rolldown/binding-linux-x64-musl",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "@rolldown/binding-openharmony-arm64",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "@rolldown/binding-wasm32-wasi",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "@rolldown/binding-win32-arm64-msvc",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "@rolldown/binding-win32-x64-msvc",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "@rolldown/pluginutils",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-android-arm-eabi",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-android-arm64",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-darwin-arm64",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-darwin-x64",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-freebsd-arm64",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-freebsd-x64",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-linux-arm-gnueabihf",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-linux-arm-musleabihf",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-linux-arm64-gnu",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-linux-arm64-musl",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-linux-loong64-gnu",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-linux-loong64-musl",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-linux-ppc64-gnu",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-linux-ppc64-musl",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-linux-riscv64-gnu",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-linux-riscv64-musl",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-linux-s390x-gnu",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-linux-x64-gnu",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-linux-x64-musl",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-openbsd-x64",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-openharmony-arm64",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-win32-arm64-msvc",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-win32-ia32-msvc",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-win32-x64-gnu",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@rollup/rollup-win32-x64-msvc",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "@scarf/scarf",
            "direct": false,
            "version": "1.4.0",
            "ecosystem": "npm"
          },
          {
            "name": "@tybys/wasm-util",
            "direct": false,
            "version": "0.10.2",
            "ecosystem": "npm"
          },
          {
            "name": "@types/argparse",
            "direct": false,
            "version": "2.0.17",
            "ecosystem": "npm"
          },
          {
            "name": "@types/benchmark",
            "direct": false,
            "version": "2.1.5",
            "ecosystem": "npm"
          },
          {
            "name": "@types/body-parser",
            "direct": false,
            "version": "1.19.6",
            "ecosystem": "npm"
          },
          {
            "name": "@types/compression",
            "direct": false,
            "version": "1.8.1",
            "ecosystem": "npm"
          },
          {
            "name": "@types/connect",
            "direct": false,
            "version": "3.4.38",
            "ecosystem": "npm"
          },
          {
            "name": "@types/debug",
            "direct": false,
            "version": "4.1.13",
            "ecosystem": "npm"
          },
          {
            "name": "@types/estree",
            "direct": false,
            "version": "1.0.8",
            "ecosystem": "npm"
          },
          {
            "name": "@types/estree",
            "direct": false,
            "version": "1.0.9",
            "ecosystem": "npm"
          },
          {
            "name": "@types/estree-jsx",
            "direct": false,
            "version": "1.0.5",
            "ecosystem": "npm"
          },
          {
            "name": "@types/express",
            "direct": false,
            "version": "5.0.6",
            "ecosystem": "npm"
          },
          {
            "name": "@types/express-serve-static-core",
            "direct": false,
            "version": "5.1.1",
            "ecosystem": "npm"
          },
          {
            "name": "@types/hast",
            "direct": false,
            "version": "3.0.4",
            "ecosystem": "npm"
          },
          {
            "name": "@types/http-errors",
            "direct": false,
            "version": "2.0.5",
            "ecosystem": "npm"
          },
          {
            "name": "@types/mdast",
            "direct": false,
            "version": "4.0.4",
            "ecosystem": "npm"
          },
          {
            "name": "@types/ms",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "@types/node",
            "direct": false,
            "version": "22.19.19",
            "ecosystem": "npm"
          },
          {
            "name": "@types/node",
            "direct": false,
            "version": "24.12.4",
            "ecosystem": "npm"
          },
          {
            "name": "@types/qs",
            "direct": false,
            "version": "6.15.1",
            "ecosystem": "npm"
          },
          {
            "name": "@types/range-parser",
            "direct": false,
            "version": "1.2.7",
            "ecosystem": "npm"
          },
          {
            "name": "@types/react",
            "direct": false,
            "version": "19.2.15",
            "ecosystem": "npm"
          },
          {
            "name": "@types/react-dom",
            "direct": false,
            "version": "19.2.3",
            "ecosystem": "npm"
          },
          {
            "name": "@types/send",
            "direct": false,
            "version": "1.2.1",
            "ecosystem": "npm"
          },
          {
            "name": "@types/serve-static",
            "direct": false,
            "version": "2.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "@types/swagger-ui-dist",
            "direct": false,
            "version": "3.30.6",
            "ecosystem": "npm"
          },
          {
            "name": "@types/unist",
            "direct": false,
            "version": "2.0.11",
            "ecosystem": "npm"
          },
          {
            "name": "@types/unist",
            "direct": false,
            "version": "3.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "@ungap/structured-clone",
            "direct": false,
            "version": "1.3.1",
            "ecosystem": "npm"
          },
          {
            "name": "@vitejs/plugin-react",
            "direct": false,
            "version": "6.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "accepts",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "argparse",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "array-find-index",
            "direct": false,
            "version": "1.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "bail",
            "direct": false,
            "version": "2.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "body-parser",
            "direct": false,
            "version": "2.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "bytes",
            "direct": false,
            "version": "3.1.2",
            "ecosystem": "npm"
          },
          {
            "name": "call-bind-apply-helpers",
            "direct": false,
            "version": "1.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "call-bound",
            "direct": false,
            "version": "1.0.4",
            "ecosystem": "npm"
          },
          {
            "name": "ccount",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "character-entities",
            "direct": false,
            "version": "2.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "character-entities-html4",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "character-entities-legacy",
            "direct": false,
            "version": "3.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "character-reference-invalid",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "comma-separated-tokens",
            "direct": false,
            "version": "2.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "commenting",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "compressible",
            "direct": false,
            "version": "2.0.18",
            "ecosystem": "npm"
          },
          {
            "name": "compression",
            "direct": false,
            "version": "1.8.1",
            "ecosystem": "npm"
          },
          {
            "name": "content-disposition",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "content-type",
            "direct": false,
            "version": "1.0.5",
            "ecosystem": "npm"
          },
          {
            "name": "content-type",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "cookie",
            "direct": false,
            "version": "0.7.2",
            "ecosystem": "npm"
          },
          {
            "name": "cookie-signature",
            "direct": false,
            "version": "1.2.2",
            "ecosystem": "npm"
          },
          {
            "name": "cors",
            "direct": false,
            "version": "2.8.6",
            "ecosystem": "npm"
          },
          {
            "name": "csstype",
            "direct": false,
            "version": "3.2.3",
            "ecosystem": "npm"
          },
          {
            "name": "debug",
            "direct": false,
            "version": "2.6.9",
            "ecosystem": "npm"
          },
          {
            "name": "debug",
            "direct": false,
            "version": "4.4.3",
            "ecosystem": "npm"
          },
          {
            "name": "decode-named-character-reference",
            "direct": false,
            "version": "1.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "depd",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "dequal",
            "direct": false,
            "version": "2.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "detect-libc",
            "direct": false,
            "version": "2.1.2",
            "ecosystem": "npm"
          },
          {
            "name": "devlop",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "dunder-proto",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "ee-first",
            "direct": false,
            "version": "1.1.1",
            "ecosystem": "npm"
          },
          {
            "name": "encodeurl",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "es-define-property",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "es-errors",
            "direct": false,
            "version": "1.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "es-object-atoms",
            "direct": false,
            "version": "1.1.2",
            "ecosystem": "npm"
          },
          {
            "name": "escape-html",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "escape-string-regexp",
            "direct": false,
            "version": "5.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "estree-util-is-identifier-name",
            "direct": false,
            "version": "3.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "etag",
            "direct": false,
            "version": "1.8.1",
            "ecosystem": "npm"
          },
          {
            "name": "express",
            "direct": false,
            "version": "5.2.1",
            "ecosystem": "npm"
          },
          {
            "name": "extend",
            "direct": false,
            "version": "3.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "fdir",
            "direct": false,
            "version": "6.5.0",
            "ecosystem": "npm"
          },
          {
            "name": "finalhandler",
            "direct": false,
            "version": "2.1.1",
            "ecosystem": "npm"
          },
          {
            "name": "forwarded",
            "direct": false,
            "version": "0.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "fp-ts",
            "direct": false,
            "version": "2.16.11",
            "ecosystem": "npm"
          },
          {
            "name": "fresh",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "fsevents",
            "direct": false,
            "version": "2.3.3",
            "ecosystem": "npm"
          },
          {
            "name": "function-bind",
            "direct": false,
            "version": "1.1.2",
            "ecosystem": "npm"
          },
          {
            "name": "get-intrinsic",
            "direct": false,
            "version": "1.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "get-proto",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "gopd",
            "direct": false,
            "version": "1.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "h264-mp4-encoder",
            "direct": false,
            "version": "1.0.12",
            "ecosystem": "npm"
          },
          {
            "name": "has-symbols",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "hasown",
            "direct": false,
            "version": "2.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "hast-util-to-jsx-runtime",
            "direct": false,
            "version": "2.3.6",
            "ecosystem": "npm"
          },
          {
            "name": "hast-util-whitespace",
            "direct": false,
            "version": "3.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "html-url-attributes",
            "direct": false,
            "version": "3.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "http-errors",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "iconv-lite",
            "direct": false,
            "version": "0.7.2",
            "ecosystem": "npm"
          },
          {
            "name": "immutable",
            "direct": false,
            "version": "5.1.9",
            "ecosystem": "npm"
          },
          {
            "name": "inherits",
            "direct": false,
            "version": "2.0.4",
            "ecosystem": "npm"
          },
          {
            "name": "inline-style-parser",
            "direct": false,
            "version": "0.2.7",
            "ecosystem": "npm"
          },
          {
            "name": "io-ts",
            "direct": false,
            "version": "2.2.22",
            "ecosystem": "npm"
          },
          {
            "name": "ipaddr.js",
            "direct": false,
            "version": "1.9.1",
            "ecosystem": "npm"
          },
          {
            "name": "is-alphabetical",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "is-alphanumerical",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "is-decimal",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "is-hexadecimal",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "is-plain-obj",
            "direct": false,
            "version": "4.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "is-promise",
            "direct": false,
            "version": "4.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "lightningcss",
            "direct": false,
            "version": "1.32.0",
            "ecosystem": "npm"
          },
          {
            "name": "lightningcss-android-arm64",
            "direct": false,
            "version": "1.32.0",
            "ecosystem": "npm"
          },
          {
            "name": "lightningcss-darwin-arm64",
            "direct": false,
            "version": "1.32.0",
            "ecosystem": "npm"
          },
          {
            "name": "lightningcss-darwin-x64",
            "direct": false,
            "version": "1.32.0",
            "ecosystem": "npm"
          },
          {
            "name": "lightningcss-freebsd-x64",
            "direct": false,
            "version": "1.32.0",
            "ecosystem": "npm"
          },
          {
            "name": "lightningcss-linux-arm-gnueabihf",
            "direct": false,
            "version": "1.32.0",
            "ecosystem": "npm"
          },
          {
            "name": "lightningcss-linux-arm64-gnu",
            "direct": false,
            "version": "1.32.0",
            "ecosystem": "npm"
          },
          {
            "name": "lightningcss-linux-arm64-musl",
            "direct": false,
            "version": "1.32.0",
            "ecosystem": "npm"
          },
          {
            "name": "lightningcss-linux-x64-gnu",
            "direct": false,
            "version": "1.32.0",
            "ecosystem": "npm"
          },
          {
            "name": "lightningcss-linux-x64-musl",
            "direct": false,
            "version": "1.32.0",
            "ecosystem": "npm"
          },
          {
            "name": "lightningcss-win32-arm64-msvc",
            "direct": false,
            "version": "1.32.0",
            "ecosystem": "npm"
          },
          {
            "name": "lightningcss-win32-x64-msvc",
            "direct": false,
            "version": "1.32.0",
            "ecosystem": "npm"
          },
          {
            "name": "lodash",
            "direct": false,
            "version": "4.18.1",
            "ecosystem": "npm"
          },
          {
            "name": "longest-streak",
            "direct": false,
            "version": "3.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "magic-string",
            "direct": false,
            "version": "0.30.21",
            "ecosystem": "npm"
          },
          {
            "name": "markdown-table",
            "direct": false,
            "version": "3.0.4",
            "ecosystem": "npm"
          },
          {
            "name": "math-intrinsics",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "mdast-util-find-and-replace",
            "direct": false,
            "version": "3.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "mdast-util-from-markdown",
            "direct": false,
            "version": "2.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "mdast-util-gfm",
            "direct": false,
            "version": "3.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "mdast-util-gfm-autolink-literal",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "mdast-util-gfm-footnote",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "mdast-util-gfm-strikethrough",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "mdast-util-gfm-table",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "mdast-util-gfm-task-list-item",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "mdast-util-mdx-expression",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "mdast-util-mdx-jsx",
            "direct": false,
            "version": "3.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "mdast-util-mdxjs-esm",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "mdast-util-phrasing",
            "direct": false,
            "version": "4.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "mdast-util-to-hast",
            "direct": false,
            "version": "13.2.1",
            "ecosystem": "npm"
          },
          {
            "name": "mdast-util-to-markdown",
            "direct": false,
            "version": "2.1.2",
            "ecosystem": "npm"
          },
          {
            "name": "mdast-util-to-string",
            "direct": false,
            "version": "4.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "media-typer",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "merge-descriptors",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "micromark",
            "direct": false,
            "version": "4.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-core-commonmark",
            "direct": false,
            "version": "2.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-extension-gfm",
            "direct": false,
            "version": "3.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-extension-gfm-autolink-literal",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-extension-gfm-footnote",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-extension-gfm-strikethrough",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-extension-gfm-table",
            "direct": false,
            "version": "2.1.1",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-extension-gfm-tagfilter",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-extension-gfm-task-list-item",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-factory-destination",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-factory-label",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-factory-space",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-factory-title",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-factory-whitespace",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-util-character",
            "direct": false,
            "version": "2.1.1",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-util-chunked",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-util-classify-character",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-util-combine-extensions",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-util-decode-numeric-character-reference",
            "direct": false,
            "version": "2.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-util-decode-string",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-util-encode",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-util-html-tag-name",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-util-normalize-identifier",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-util-resolve-all",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-util-sanitize-uri",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-util-subtokenize",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-util-symbol",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "micromark-util-types",
            "direct": false,
            "version": "2.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "mime-db",
            "direct": false,
            "version": "1.54.0",
            "ecosystem": "npm"
          },
          {
            "name": "mime-types",
            "direct": false,
            "version": "3.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "moment",
            "direct": false,
            "version": "2.30.1",
            "ecosystem": "npm"
          },
          {
            "name": "ms",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "ms",
            "direct": false,
            "version": "2.1.3",
            "ecosystem": "npm"
          },
          {
            "name": "mutative",
            "direct": false,
            "version": "1.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "nanoid",
            "direct": false,
            "version": "3.3.12",
            "ecosystem": "npm"
          },
          {
            "name": "negotiator",
            "direct": false,
            "version": "0.6.4",
            "ecosystem": "npm"
          },
          {
            "name": "negotiator",
            "direct": false,
            "version": "1.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "object-assign",
            "direct": false,
            "version": "4.1.1",
            "ecosystem": "npm"
          },
          {
            "name": "object-inspect",
            "direct": false,
            "version": "1.13.4",
            "ecosystem": "npm"
          },
          {
            "name": "on-finished",
            "direct": false,
            "version": "2.4.1",
            "ecosystem": "npm"
          },
          {
            "name": "on-headers",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "once",
            "direct": false,
            "version": "1.4.0",
            "ecosystem": "npm"
          },
          {
            "name": "package-name-regex",
            "direct": false,
            "version": "2.0.6",
            "ecosystem": "npm"
          },
          {
            "name": "parse-entities",
            "direct": false,
            "version": "4.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "parseurl",
            "direct": false,
            "version": "1.3.3",
            "ecosystem": "npm"
          },
          {
            "name": "path-to-regexp",
            "direct": false,
            "version": "8.4.2",
            "ecosystem": "npm"
          },
          {
            "name": "picocolors",
            "direct": false,
            "version": "1.1.1",
            "ecosystem": "npm"
          },
          {
            "name": "picomatch",
            "direct": false,
            "version": "4.0.4",
            "ecosystem": "npm"
          },
          {
            "name": "postcss",
            "direct": false,
            "version": "8.5.15",
            "ecosystem": "npm"
          },
          {
            "name": "property-information",
            "direct": false,
            "version": "7.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "proxy-addr",
            "direct": false,
            "version": "2.0.7",
            "ecosystem": "npm"
          },
          {
            "name": "qs",
            "direct": false,
            "version": "6.15.2",
            "ecosystem": "npm"
          },
          {
            "name": "range-parser",
            "direct": false,
            "version": "1.2.1",
            "ecosystem": "npm"
          },
          {
            "name": "raw-body",
            "direct": false,
            "version": "3.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "react-markdown",
            "direct": false,
            "version": "10.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "remark-gfm",
            "direct": false,
            "version": "4.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "remark-parse",
            "direct": false,
            "version": "11.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "remark-rehype",
            "direct": false,
            "version": "11.1.2",
            "ecosystem": "npm"
          },
          {
            "name": "remark-stringify",
            "direct": false,
            "version": "11.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "rolldown",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "rollup",
            "direct": false,
            "version": "4.60.4",
            "ecosystem": "npm"
          },
          {
            "name": "rollup-plugin-license",
            "direct": false,
            "version": "3.7.1",
            "ecosystem": "npm"
          },
          {
            "name": "router",
            "direct": false,
            "version": "2.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "rxjs",
            "direct": false,
            "version": "7.8.2",
            "ecosystem": "npm"
          },
          {
            "name": "safe-buffer",
            "direct": false,
            "version": "5.2.1",
            "ecosystem": "npm"
          },
          {
            "name": "safer-buffer",
            "direct": false,
            "version": "2.1.2",
            "ecosystem": "npm"
          },
          {
            "name": "scheduler",
            "direct": false,
            "version": "0.27.0",
            "ecosystem": "npm"
          },
          {
            "name": "send",
            "direct": false,
            "version": "1.2.1",
            "ecosystem": "npm"
          },
          {
            "name": "serve-static",
            "direct": false,
            "version": "2.2.1",
            "ecosystem": "npm"
          },
          {
            "name": "setprototypeof",
            "direct": false,
            "version": "1.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "side-channel",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "side-channel-list",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "side-channel-map",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "side-channel-weakmap",
            "direct": false,
            "version": "1.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "source-map-js",
            "direct": false,
            "version": "1.2.1",
            "ecosystem": "npm"
          },
          {
            "name": "space-separated-tokens",
            "direct": false,
            "version": "2.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "spdx-compare",
            "direct": false,
            "version": "1.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "spdx-exceptions",
            "direct": false,
            "version": "2.5.0",
            "ecosystem": "npm"
          },
          {
            "name": "spdx-expression-parse",
            "direct": false,
            "version": "3.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "spdx-expression-validate",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "spdx-license-ids",
            "direct": false,
            "version": "3.0.23",
            "ecosystem": "npm"
          },
          {
            "name": "spdx-ranges",
            "direct": false,
            "version": "2.1.1",
            "ecosystem": "npm"
          },
          {
            "name": "spdx-satisfies",
            "direct": false,
            "version": "5.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "statuses",
            "direct": false,
            "version": "2.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "stringify-entities",
            "direct": false,
            "version": "4.0.4",
            "ecosystem": "npm"
          },
          {
            "name": "style-to-js",
            "direct": false,
            "version": "1.1.21",
            "ecosystem": "npm"
          },
          {
            "name": "style-to-object",
            "direct": false,
            "version": "1.0.14",
            "ecosystem": "npm"
          },
          {
            "name": "swagger-ui-dist",
            "direct": false,
            "version": "5.32.6",
            "ecosystem": "npm"
          },
          {
            "name": "tinyglobby",
            "direct": false,
            "version": "0.2.17",
            "ecosystem": "npm"
          },
          {
            "name": "toidentifier",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "trim-lines",
            "direct": false,
            "version": "3.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "trough",
            "direct": false,
            "version": "2.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "tslib",
            "direct": false,
            "version": "2.8.1",
            "ecosystem": "npm"
          },
          {
            "name": "type-is",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "typescript",
            "direct": false,
            "version": "5.9.3",
            "ecosystem": "npm"
          },
          {
            "name": "undici-types",
            "direct": false,
            "version": "6.21.0",
            "ecosystem": "npm"
          },
          {
            "name": "undici-types",
            "direct": false,
            "version": "7.16.0",
            "ecosystem": "npm"
          },
          {
            "name": "unified",
            "direct": false,
            "version": "11.0.5",
            "ecosystem": "npm"
          },
          {
            "name": "unist-util-is",
            "direct": false,
            "version": "6.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "unist-util-position",
            "direct": false,
            "version": "5.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "unist-util-stringify-position",
            "direct": false,
            "version": "4.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "unist-util-visit",
            "direct": false,
            "version": "5.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "unist-util-visit-parents",
            "direct": false,
            "version": "6.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "unpipe",
            "direct": false,
            "version": "1.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "vary",
            "direct": false,
            "version": "1.1.2",
            "ecosystem": "npm"
          },
          {
            "name": "vfile",
            "direct": false,
            "version": "6.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "vfile-message",
            "direct": false,
            "version": "4.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "vite",
            "direct": false,
            "version": "8.0.16",
            "ecosystem": "npm"
          },
          {
            "name": "wrappy",
            "direct": false,
            "version": "1.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "zwitch",
            "direct": false,
            "version": "2.0.4",
            "ecosystem": "npm"
          },
          {
            "name": "cython",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "ipython",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-cuda-cupti-cu12",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-cuda-nvcc-cu12",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-cuda-nvrtc-cu12",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-cuda-runtime-cu12",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-nvjitlink-cu12",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "openmm",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pytest",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "scipy",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "setuptools-scm",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          }
        ],
        "collected": true,
        "truncated": false,
        "total_count": 312,
        "direct_count": 8,
        "indirect_count": 304
      }
    },
    "maintainership": {
      "issues": {
        "open_prs": 0,
        "merged_prs": 39,
        "open_issues": 7,
        "closed_ratio": 0.932,
        "closed_issues": 96,
        "closed_unmerged_prs": 10
      },
      "bus_factor": 1,
      "bot_contributors": 1,
      "top_contributors": [
        {
          "type": "User",
          "login": "stefdoerr",
          "commits": 1202,
          "avatar_url": "https://avatars.githubusercontent.com/u/7935362?v=4"
        },
        {
          "type": "User",
          "login": "alejandrovr",
          "commits": 11,
          "avatar_url": "https://avatars.githubusercontent.com/u/16488180?v=4"
        },
        {
          "type": "User",
          "login": "j3mdamas",
          "commits": 5,
          "avatar_url": "https://avatars.githubusercontent.com/u/10810178?v=4"
        },
        {
          "type": "User",
          "login": "giadefa",
          "commits": 3,
          "avatar_url": "https://avatars.githubusercontent.com/u/7776826?v=4"
        },
        {
          "type": "User",
          "login": "SauravMaheshkar",
          "commits": 2,
          "avatar_url": "https://avatars.githubusercontent.com/u/61241031?v=4"
        },
        {
          "type": "User",
          "login": "FrPsc",
          "commits": 1,
          "avatar_url": "https://avatars.githubusercontent.com/u/57720021?v=4"
        },
        {
          "type": "User",
          "login": "RaulPPelaez",
          "commits": 1,
          "avatar_url": "https://avatars.githubusercontent.com/u/13015792?v=4"
        },
        {
          "type": "User",
          "login": "rubbs14",
          "commits": 1,
          "avatar_url": "https://avatars.githubusercontent.com/u/20106786?v=4"
        },
        {
          "type": "User",
          "login": "tonigi",
          "commits": 1,
          "avatar_url": "https://avatars.githubusercontent.com/u/2752011?v=4"
        }
      ],
      "contributors_sampled": 9,
      "top_contributor_share": 0.98
    },
    "quality_signals": {
      "has_ci": true,
      "has_tests": true,
      "ci_workflows": [
        "docs.yml",
        "publish.yml",
        "publish_conda.yml",
        "pyodide_build.yml",
        "test.yml",
        "workflow.yml"
      ],
      "has_docs_dir": true,
      "linter_configs": [],
      "has_editorconfig": false,
      "has_linter_config": false,
      "has_precommit_config": false
    },
    "security_signals": {
      "lockfiles": [
        "package-lock.json"
      ],
      "scorecard": {
        "checks": [
          {
            "name": "Binary-Artifacts",
            "score": 10,
            "reason": "no binaries found in the repo",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
          },
          {
            "name": "Branch-Protection",
            "score": null,
            "reason": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
          },
          {
            "name": "CI-Tests",
            "score": 0,
            "reason": "0 out of 2 merged PRs checked by a CI test -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
          },
          {
            "name": "CII-Best-Practices",
            "score": 0,
            "reason": "no effort to earn an OpenSSF best practices badge detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
          },
          {
            "name": "Code-Review",
            "score": 0,
            "reason": "Found 0/28 approved changesets -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
          },
          {
            "name": "Contributors",
            "score": 6,
            "reason": "project has 2 contributing companies or organizations -- score normalized to 6",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
          },
          {
            "name": "Dangerous-Workflow",
            "score": 10,
            "reason": "no dangerous workflow patterns detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
          },
          {
            "name": "Dependency-Update-Tool",
            "score": 10,
            "reason": "update tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
          },
          {
            "name": "Fuzzing",
            "score": 0,
            "reason": "project is not fuzzed",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
          },
          {
            "name": "License",
            "score": 9,
            "reason": "license file detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
          },
          {
            "name": "Maintained",
            "score": 10,
            "reason": "30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
          },
          {
            "name": "Packaging",
            "score": null,
            "reason": "packaging workflow not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
          },
          {
            "name": "Pinned-Dependencies",
            "score": 0,
            "reason": "dependency not pinned by hash detected -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
          },
          {
            "name": "SAST",
            "score": 10,
            "reason": "SAST tool is run on all commits",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
          },
          {
            "name": "Security-Policy",
            "score": 0,
            "reason": "security policy file not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
          },
          {
            "name": "Signed-Releases",
            "score": 8,
            "reason": "5 out of the last 5 releases have a total of 5 signed artifacts.",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
          },
          {
            "name": "Token-Permissions",
            "score": 0,
            "reason": "detected GitHub workflow tokens with excessive permissions",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
          },
          {
            "name": "Vulnerabilities",
            "score": 10,
            "reason": "0 existing vulnerabilities detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
          }
        ],
        "commit": "48f1c18e7f745413037db098314de13549b5a02f",
        "ran_at": "2026-07-24T14:05:59Z",
        "aggregate_score": 5.9,
        "scorecard_version": "v5.5.0"
      },
      "has_codeql_workflow": false,
      "has_security_policy": false,
      "has_dependabot_config": false
    },
    "contribution_flow": {
      "collected": true,
      "ci_last_run_at": "2026-07-24T14:05:33Z",
      "oldest_open_prs": [],
      "last_merged_pr_at": "2026-07-22T06:55:45Z",
      "ci_last_conclusion": null,
      "oldest_open_issues": [
        {
          "number": 41,
          "created_at": "2019-11-27T01:48:26Z",
          "last_comment_at": "2019-11-27T01:58:50Z",
          "last_comment_author": "stefdoerr"
        },
        {
          "number": 46,
          "created_at": "2020-04-06T16:11:19Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 79,
          "created_at": "2021-10-08T09:34:08Z",
          "last_comment_at": "2021-10-08T12:05:16Z",
          "last_comment_author": "stefdoerr"
        },
        {
          "number": 93,
          "created_at": "2022-01-31T11:43:55Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 122,
          "created_at": "2022-12-23T15:10:29Z",
          "last_comment_at": "2022-12-23T17:12:16Z",
          "last_comment_author": "giadefa"
        },
        {
          "number": 133,
          "created_at": "2023-11-03T13:25:14Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 145,
          "created_at": "2024-12-14T14:06:06Z",
          "last_comment_at": "2024-12-16T09:41:13Z",
          "last_comment_author": "dargen3"
        }
      ]
    }
  },
  "config": {
    "disabled_metrics": [],
    "disabled_categories": [],
    "disabled_components": {}
  },
  "source": {
    "url": "https://github.com/Acellera/moleculekit",
    "host": "github.com",
    "name": "moleculekit",
    "owner": "Acellera"
  },
  "metrics": {
    "overall": {
      "key": "overall",
      "band": "excellent",
      "name": "Overall health",
      "note": "The weighted overall 68 is calibrated to 80 on the published index scale (record calibration 2026-08-02).",
      "notes": [
        {
          "code": "overall_calibration",
          "params": {
            "raw": 68,
            "calibrated": 80,
            "calibration": "2026-08-02"
          }
        }
      ],
      "value": 80,
      "inputs": {
        "security": 67,
        "vitality": 89,
        "community": 55,
        "governance": 63,
        "calibration": "2026-08-02",
        "engineering": 63,
        "ai_readiness": 64,
        "weighted_overall_raw": 68
      },
      "components": []
    },
    "categories": [
      {
        "key": "vitality",
        "band": "excellent",
        "name": "Vitality",
        "value": 89,
        "weight": 0.21,
        "metrics": [
          {
            "key": "development_activity",
            "band": "excellent",
            "name": "Development activity",
            "note": null,
            "notes": [],
            "value": 83,
            "inputs": {
              "commits_last_year": 227,
              "human_commit_share": 0.97,
              "days_since_last_push": 0,
              "active_weeks_last_year": 27
            },
            "components": [
              {
                "key": "push_recency",
                "name": "Push recency",
                "detail": "last push 0 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "push_recency",
                    "params": {
                      "days": 0
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_cadence",
                "name": "Commit cadence",
                "detail": "27/52 weeks with commits",
                "points": 18.7,
                "status": "partial",
                "details": [
                  {
                    "code": "commit_cadence_weeks",
                    "params": {
                      "weeks": 27
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_volume",
                "name": "Commit volume",
                "detail": "227 commits in the last year",
                "points": 18,
                "status": "met",
                "details": [
                  {
                    "code": "commits_last_year",
                    "params": {
                      "count": 227
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "openssf_scorecard_maintained",
                "name": "OpenSSF Scorecard: Maintained",
                "detail": "30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "release_discipline",
            "band": "exceptional",
            "name": "Release discipline",
            "note": null,
            "notes": [],
            "value": 98,
            "inputs": {
              "releases_count": 58,
              "latest_release_tag": "v1.15.6",
              "releases_from_tags": false,
              "days_since_latest_release": 2,
              "mean_days_between_releases": 3
            },
            "components": [
              {
                "key": "ships_releases",
                "name": "Ships releases",
                "detail": "58 releases published",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "releases_published",
                    "params": {
                      "count": 58
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "release_recency",
                "name": "Release recency",
                "detail": "latest release 2 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "release_recency",
                    "params": {
                      "days": 2
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "release_cadence",
                "name": "Release cadence",
                "detail": "a release every ~3 days",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "release_cadence",
                    "params": {
                      "gap": 3
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "openssf_scorecard_signed_releases",
                "name": "OpenSSF Scorecard: Signed-Releases",
                "detail": "5 out of the last 5 releases have a total of 5 signed artifacts.",
                "points": 8,
                "status": "partial",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "abandonment",
            "band": "exceptional",
            "name": "Abandonment",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "cap": null,
              "state": "maintained",
              "guards": [],
              "signals": [],
              "red_flag": false,
              "multiplier_pct": 100,
              "declared_reason": null,
              "unverified_reason": null,
              "unanswered_open_prs": null,
              "unanswered_open_issues": null,
              "days_since_last_merged_pr": null,
              "days_since_last_human_commit": 9,
              "days_since_last_human_commit_is_floor": false
            },
            "components": [
              {
                "key": "project_is_still_maintained",
                "name": "Project is still maintained",
                "detail": "last human commit 9 days ago",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "abandonment_maintained",
                    "params": {
                      "days": 9
                    }
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Is the project alive — is code being written and are releases shipping?"
      },
      {
        "key": "community",
        "band": "moderate",
        "name": "Community & Adoption",
        "value": 55,
        "weight": 0.17,
        "metrics": [
          {
            "key": "popularity",
            "band": "moderate",
            "name": "Popularity & adoption",
            "note": null,
            "notes": [],
            "value": 56,
            "inputs": {
              "forks": 35,
              "stars": 237,
              "watchers": 9,
              "growth_state": "unverified",
              "growth_factor_pct": 100,
              "growth_unverified_reason": "no_history"
            },
            "components": [
              {
                "key": "stars",
                "name": "Stars",
                "detail": "237 stars",
                "points": 38.5,
                "status": "partial",
                "details": [
                  {
                    "code": "stars",
                    "params": {
                      "count": 237
                    }
                  }
                ],
                "max_points": 60
              },
              {
                "key": "forks",
                "name": "Forks",
                "detail": "35 forks",
                "points": 12.8,
                "status": "partial",
                "details": [
                  {
                    "code": "forks",
                    "params": {
                      "count": 35
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "watchers",
                "name": "Watchers",
                "detail": "9 watchers",
                "points": 5,
                "status": "partial",
                "details": [
                  {
                    "code": "watchers",
                    "params": {
                      "count": 9
                    }
                  }
                ],
                "max_points": 15
              }
            ]
          },
          {
            "key": "community_health",
            "band": "weak",
            "name": "Community health",
            "note": null,
            "notes": [],
            "value": 44,
            "inputs": {
              "has_readme": true,
              "has_license": true,
              "readme_badges": null,
              "has_contributing": false,
              "has_issue_template": false,
              "has_code_of_conduct": false,
              "readme_badge_services": [],
              "has_pull_request_template": false
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 22.5,
                "status": "met",
                "details": [],
                "max_points": 22.5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file present, not a recognized license",
                "points": 16.9,
                "status": "partial",
                "details": [
                  {
                    "code": "license_custom",
                    "params": {}
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributing_guide",
                "name": "CONTRIBUTING guide",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 18
              },
              {
                "key": "code_of_conduct",
                "name": "Code of conduct",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 13.5
              },
              {
                "key": "issue_template",
                "name": "Issue template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.2
              },
              {
                "key": "pr_template",
                "name": "PR template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.3
              }
            ]
          },
          {
            "key": "ecosystem_adoption",
            "band": "good",
            "name": "Ecosystem adoption (downloads)",
            "note": "Excluded from scoring (no data or not applicable): Registry dependents. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "registry_dependents"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 69,
            "inputs": {
              "packages": [
                "moleculekit",
                "molkitten"
              ],
              "dependents": null,
              "ecosystems": "pypi",
              "total_downloads": null,
              "monthly_downloads": 14435
            },
            "components": [
              {
                "key": "monthly_downloads",
                "name": "Monthly downloads",
                "detail": "14,435 downloads/month across pypi",
                "points": 55.5,
                "status": "partial",
                "details": [
                  {
                    "code": "downloads_monthly",
                    "params": {
                      "count": 14435,
                      "ecosystems": "pypi"
                    }
                  }
                ],
                "max_points": 80
              },
              {
                "key": "registry_dependents",
                "name": "Registry dependents",
                "detail": "not reported by this ecosystem",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "not_reported_by_this_ecosystem",
                    "params": {}
                  }
                ],
                "max_points": 20
              }
            ]
          }
        ],
        "description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
      },
      {
        "key": "governance",
        "band": "moderate",
        "name": "Sustainability & Governance",
        "value": 63,
        "weight": 0.23,
        "metrics": [
          {
            "key": "maintainer_resilience",
            "band": "at_risk",
            "name": "Maintainer resilience (bus factor)",
            "note": null,
            "notes": [],
            "value": 28,
            "inputs": {
              "bus_factor": 1,
              "contributors_sampled": 9,
              "top_contributor_share": 0.98
            },
            "components": [
              {
                "key": "bus_factor",
                "name": "Bus factor",
                "detail": "1 contributor(s) cover half of all commits",
                "points": 9,
                "status": "partial",
                "details": [
                  {
                    "code": "bus_factor",
                    "params": {
                      "count": 1
                    }
                  }
                ],
                "max_points": 54
              },
              {
                "key": "commit_distribution",
                "name": "Commit distribution",
                "detail": "top contributor authored 98% of commits",
                "points": 0.5,
                "status": "partial",
                "details": [
                  {
                    "code": "top_contributor_share",
                    "params": {
                      "share": 98
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributor_breadth",
                "name": "Contributor breadth",
                "detail": "9 contributors",
                "points": 12.2,
                "status": "partial",
                "details": [
                  {
                    "code": "contributors_sampled",
                    "params": {
                      "count": 9
                    }
                  }
                ],
                "max_points": 13.5
              },
              {
                "key": "openssf_scorecard_contributors",
                "name": "OpenSSF Scorecard: Contributors",
                "detail": "project has 2 contributing companies or organizations -- score normalized to 6",
                "points": 6,
                "status": "partial",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "responsiveness",
            "band": "good",
            "name": "Issue & PR responsiveness",
            "note": "Excluded from scoring (no data or not applicable): Newcomer PR acceptance. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "newcomer_pr_acceptance"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 72,
            "inputs": {
              "merged_prs": 39,
              "open_issues": 7,
              "closed_issues": 96,
              "prs_merged_7d": null,
              "prs_decided_7d": null,
              "prs_merged_30d": null,
              "prs_decided_30d": null,
              "issue_closed_ratio": 0.932,
              "closed_unmerged_prs": 10,
              "first_time_authors_30d": null,
              "first_time_prs_merged_30d": null,
              "first_time_prs_decided_30d": null
            },
            "components": [
              {
                "key": "issue_resolution",
                "name": "Issue resolution",
                "detail": "93% of issues closed",
                "points": 39.1,
                "status": "partial",
                "details": [
                  {
                    "code": "issues_closed_share",
                    "params": {
                      "share": 93
                    }
                  }
                ],
                "max_points": 42
              },
              {
                "key": "pr_acceptance",
                "name": "PR acceptance",
                "detail": "39/49 decided PRs merged",
                "points": 23.9,
                "status": "partial",
                "details": [
                  {
                    "code": "decided_prs_merged",
                    "params": {
                      "merged": 39,
                      "decided": 49
                    }
                  }
                ],
                "max_points": 30
              },
              {
                "key": "newcomer_pr_acceptance",
                "name": "Newcomer PR acceptance",
                "detail": "no first-time contributor's PR decided in 30d",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_newcomer_prs",
                    "params": {
                      "days": 30
                    }
                  }
                ],
                "max_points": 13
              },
              {
                "key": "openssf_scorecard_code_review",
                "name": "OpenSSF Scorecard: Code-Review",
                "detail": "Found 0/28 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              }
            ]
          },
          {
            "key": "stewardship",
            "band": "good",
            "name": "Ownership & stewardship",
            "note": null,
            "notes": [],
            "value": 67,
            "inputs": {
              "followers": 67,
              "owner_type": "Organization",
              "is_verified": null,
              "owner_login": "Acellera",
              "public_repos": 38,
              "account_age_days": 4434
            },
            "components": [
              {
                "key": "ownership_backing",
                "name": "Ownership backing",
                "detail": "organization-owned",
                "points": 30,
                "status": "met",
                "details": [
                  {
                    "code": "owner_organization",
                    "params": {}
                  }
                ],
                "max_points": 30
              },
              {
                "key": "verified_domain",
                "name": "Verified domain",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "owner_reach",
                "name": "Owner reach",
                "detail": "67 followers of Acellera",
                "points": 13.2,
                "status": "partial",
                "details": [
                  {
                    "code": "owner_followers",
                    "params": {
                      "count": 67,
                      "login": "Acellera"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "track_record",
                "name": "Track record",
                "detail": "38 public repos, account ~12 yr old",
                "points": 23.6,
                "status": "partial",
                "details": [
                  {
                    "code": "public_repos",
                    "params": {
                      "count": 38
                    }
                  },
                  {
                    "code": "account_age_years",
                    "params": {
                      "years": 12
                    }
                  }
                ],
                "max_points": 25
              }
            ]
          },
          {
            "key": "package_maintenance",
            "band": "exceptional",
            "name": "Package maintenance",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "packages": [
                "moleculekit",
                "molkitten"
              ],
              "ecosystems": "pypi",
              "any_deprecated": false,
              "min_days_since_publish": 0
            },
            "components": [
              {
                "key": "published_resolvable",
                "name": "Published & resolvable",
                "detail": "2 package(s) on pypi",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "packages_published",
                    "params": {
                      "count": 2,
                      "ecosystems": "pypi"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "publish_recency",
                "name": "Publish recency",
                "detail": "latest publish 0 days ago",
                "points": 35,
                "status": "met",
                "details": [
                  {
                    "code": "publish_recency",
                    "params": {
                      "days": 0
                    }
                  }
                ],
                "max_points": 35
              },
              {
                "key": "version_history",
                "name": "Version history",
                "detail": "254 published versions",
                "points": 20,
                "status": "met",
                "details": [
                  {
                    "code": "published_versions",
                    "params": {
                      "count": 254
                    }
                  }
                ],
                "max_points": 20
              },
              {
                "key": "not_deprecated",
                "name": "Not deprecated",
                "detail": "active, not deprecated or yanked",
                "points": 20,
                "status": "met",
                "details": [
                  {
                    "code": "package_not_deprecated",
                    "params": {}
                  }
                ],
                "max_points": 20
              }
            ]
          }
        ],
        "description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
      },
      {
        "key": "engineering",
        "band": "moderate",
        "name": "Engineering Quality",
        "value": 63,
        "weight": 0.19,
        "metrics": [
          {
            "key": "engineering_practices",
            "band": "weak",
            "name": "Engineering practices",
            "note": null,
            "notes": [],
            "value": 48,
            "inputs": {
              "has_ci": true,
              "has_tests": true,
              "has_editorconfig": false,
              "has_linter_config": false,
              "has_precommit_config": false
            },
            "components": [
              {
                "key": "ci_workflows",
                "name": "CI workflows",
                "detail": "6 workflow(s)",
                "points": 24,
                "status": "met",
                "details": [
                  {
                    "code": "ci_workflows",
                    "params": {
                      "count": 6
                    }
                  }
                ],
                "max_points": 24
              },
              {
                "key": "tests_present",
                "name": "Tests present",
                "detail": null,
                "points": 24,
                "status": "met",
                "details": [],
                "max_points": 24
              },
              {
                "key": "linter_config",
                "name": "Linter config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 16
              },
              {
                "key": "pre_commit_hooks",
                "name": "Pre-commit hooks",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 9.6
              },
              {
                "key": "editorconfig",
                "name": ".editorconfig",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.4
              },
              {
                "key": "openssf_scorecard_ci_tests",
                "name": "OpenSSF Scorecard: CI-Tests",
                "detail": "0 out of 2 merged PRs checked by a CI test -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              }
            ]
          },
          {
            "key": "documentation",
            "band": "excellent",
            "name": "Documentation",
            "note": null,
            "notes": [],
            "value": 85,
            "inputs": {
              "topics": [
                "molecule",
                "machine-learning",
                "proteins",
                "drug-discovery",
                "molecular-modeling",
                "molecular-simulation"
              ],
              "has_wiki": true,
              "homepage": null,
              "has_readme": true,
              "has_docs_dir": true,
              "has_description": true
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 30,
                "status": "met",
                "details": [],
                "max_points": 30
              },
              {
                "key": "documentation_directory",
                "name": "Documentation directory",
                "detail": null,
                "points": 25,
                "status": "met",
                "details": [],
                "max_points": 25
              },
              {
                "key": "documentation_homepage_site",
                "name": "Documentation / homepage site",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "repository_description",
                "name": "Repository description",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "topics",
                "name": "Topics",
                "detail": "6 topics",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "topics_count",
                    "params": {
                      "count": 6
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "wiki",
                "name": "Wiki",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
      },
      {
        "key": "security",
        "band": "good",
        "name": "Security",
        "value": 67,
        "weight": 0.16,
        "metrics": [
          {
            "key": "security_posture",
            "band": "moderate",
            "name": "Security posture",
            "note": "Excluded from scoring (no data or not applicable): Branch-Protection, Packaging. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "branch_protection",
                    "packaging"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 59,
            "inputs": {
              "source": "openssf_scorecard",
              "checks_evaluated": 16,
              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 2,
              "scorecard_aggregate": 5.9
            },
            "components": [
              {
                "key": "binary_artifacts",
                "name": "Binary-Artifacts",
                "detail": "no binaries found in the repo",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "ci_tests",
                "name": "CI-Tests",
                "detail": "0 out of 2 merged PRs checked by a CI test -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "code_review",
                "name": "Code-Review",
                "detail": "Found 0/28 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 2 contributing companies or organizations -- score normalized to 6",
                "points": 1.5,
                "status": "partial",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no dangerous workflow patterns detected",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "update tool detected",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.2,
                "status": "partial",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow not detected",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
                "detail": "SAST tool is run on all commits",
                "points": 5,
                "status": "met",
                "details": [],
                "max_points": 5
              },
              {
                "key": "security_policy",
                "name": "Security-Policy",
                "detail": "security policy file not detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "signed_releases",
                "name": "Signed-Releases",
                "detail": "5 out of the last 5 releases have a total of 5 signed artifacts.",
                "points": 6,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "detected GitHub workflow tokens with excessive permissions",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "0 existing vulnerabilities detected",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              }
            ]
          },
          {
            "key": "dependency_advisories",
            "band": "exceptional",
            "name": "Dependency advisories",
            "note": "Excluded from scoring (no data or not applicable): Indirect dependencies free of known advisories, No advisories left outstanding. Remaining weights renormalized. Matched 296 resolved dependencies against OSV; 16 could not be assessed (no resolved version, an unsupported ecosystem, or beyond the reported package list). This repository publishes no package the index resolves, so the repository dependency graph was assessed instead. That graph mixes development and test pins with shipped dependencies, so only the declared runtime dependencies are scored; transitive findings are reported as context and excluded from the score. Reachability is not analyzed.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "indirect_dependencies_free_of_known_advisories",
                    "no_advisories_left_outstanding"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              },
              {
                "code": "advisories_scope_repository",
                "params": {
                  "assessed": 296
                }
              },
              {
                "code": "advisories_unassessed",
                "params": {
                  "count": 16
                }
              },
              {
                "code": "advisories_repo_graph_caveat",
                "params": {}
              },
              {
                "code": "advisories_reachability",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "source": "osv",
              "advisories": 0,
              "affected_packages": 0,
              "assessed_packages": 296,
              "unassessed_packages": 16,
              "affected_by_severity": "none",
              "direct_affected_packages": 0
            },
            "components": [
              {
                "key": "direct_dependencies_free_of_known_advisories",
                "name": "Direct dependencies free of known advisories",
                "detail": "no direct dependency carries a known advisory",
                "points": 35,
                "status": "met",
                "details": [
                  {
                    "code": "no_direct_advisories",
                    "params": {}
                  }
                ],
                "max_points": 35
              },
              {
                "key": "indirect_dependencies_free_of_known_advisories",
                "name": "Indirect dependencies free of known advisories",
                "detail": "transitive set not separable from development and test dependencies in this scope",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "advisories_scope_not_separable",
                    "params": {}
                  }
                ],
                "max_points": 25
              },
              {
                "key": "no_advisories_left_outstanding",
                "name": "No advisories left outstanding",
                "detail": "no advisory carries a publication date",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "advisories_no_publication_date",
                    "params": {}
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "malicious_dependencies",
            "band": "exceptional",
            "name": "Malicious dependencies",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "source": "osv",
              "meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
              "packages": [],
              "red_flag": false,
              "assessed_packages": 296,
              "malicious_packages": 0,
              "direct_malicious_packages": 0,
              "withdrawn_malicious_packages": 0,
              "installable_malicious_packages": 0
            },
            "components": [
              {
                "key": "no_dependency_reported_as_a_malicious_package",
                "name": "No dependency reported as a malicious package",
                "detail": "no dependency is reported as a malicious package",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "no_malicious_dependencies",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          },
          {
            "key": "high_risk_jurisdiction_exposure",
            "band": "exceptional",
            "name": "High-Risk Jurisdiction Exposure",
            "note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
            "notes": [
              {
                "code": "jurisdiction_evidence_limits",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "meaning": "self-published location evidence; not nationality or citizenship",
              "red_flag": false,
              "exposures": [],
              "policy_countries": [
                "Russia",
                "Iran",
                "North Korea"
              ],
              "commit_weight_rule": {
                "min_commits": 50,
                "min_commit_share": 0.1
              },
              "review_only_matches": 0,
              "below_threshold_exposures": [],
              "assessed_self_published_locations": 8
            },
            "components": [
              {
                "key": "policy_exposure_multiplier",
                "name": "Policy exposure multiplier",
                "detail": "no confirmed policy-scope location match",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "jurisdiction_no_match",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "moderate",
        "name": "AI Readiness",
        "value": 64,
        "weight": 0.04,
        "metrics": [
          {
            "key": "ai_agent_context",
            "band": "moderate",
            "name": "Agent context & guidance",
            "note": null,
            "notes": [],
            "value": 60,
            "inputs": {
              "has_llms_txt": true,
              "legible_history_share": 0.01,
              "agent_instruction_files": [
                "AGENTS.md"
              ],
              "agent_instruction_max_bytes": 9201
            },
            "components": [
              {
                "key": "agent_instructions",
                "name": "Agent instructions",
                "detail": "AGENTS.md",
                "points": 45,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "AGENTS.md"
                    }
                  }
                ],
                "max_points": 45
              },
              {
                "key": "machine_readable_docs_llms_txt",
                "name": "Machine-readable docs (llms.txt)",
                "detail": "llms.txt present",
                "points": 15,
                "status": "met",
                "details": [
                  {
                    "code": "llms_txt_present",
                    "params": {}
                  }
                ],
                "max_points": 15
              },
              {
                "key": "legible_commit_history",
                "name": "Legible commit history",
                "detail": "1 of 97 human commits state their intent (structured subject or explanatory body)",
                "points": 0.5,
                "status": "partial",
                "details": [
                  {
                    "code": "legible_history",
                    "params": {
                      "legible": 1,
                      "sampled": 97
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "ai_verify_loop",
            "band": "good",
            "name": "Verify loop (build / test / typecheck)",
            "note": null,
            "notes": [],
            "value": 69,
            "inputs": {
              "has_nix": false,
              "has_tests": true,
              "lockfiles": [
                "package-lock.json"
              ],
              "has_dockerfile": true,
              "typed_language": false,
              "bootstrap_files": [
                "Makefile",
                "doc/Makefile"
              ],
              "has_devcontainer": false,
              "has_linter_config": false,
              "typecheck_configs": [
                "viewer-frontend/tsconfig.json"
              ],
              "agent_commit_share": 0,
              "toolchain_manifests": [],
              "dependency_bot_commit_share": 0.03
            },
            "components": [
              {
                "key": "one_command_bootstrap",
                "name": "One-command bootstrap",
                "detail": "Makefile, doc/Makefile",
                "points": 18,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "Makefile, doc/Makefile"
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "automated_tests",
                "name": "Automated tests",
                "detail": null,
                "points": 22,
                "status": "met",
                "details": [],
                "max_points": 22
              },
              {
                "key": "lint_format_config",
                "name": "Lint / format config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
              },
              {
                "key": "static_type_checking",
                "name": "Static type checking",
                "detail": "viewer-frontend/tsconfig.json",
                "points": 11,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "viewer-frontend/tsconfig.json"
                    }
                  }
                ],
                "max_points": 11
              },
              {
                "key": "reproducible_environment",
                "name": "Reproducible environment",
                "detail": "Dockerfile, lockfile",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "Dockerfile, lockfile"
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "demonstrated_agent_practice",
                "name": "Demonstrated agent practice",
                "detail": "no agent-authored commits among the last 100",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_authored_commits",
                    "params": {
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "automated_maintenance",
                "name": "Automated maintenance",
                "detail": "3 of the last 100 commits are automated dependency updates",
                "points": 8,
                "status": "met",
                "details": [
                  {
                    "code": "dependency_bot_commits",
                    "params": {
                      "count": 3,
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 8
              },
              {
                "key": "openssf_scorecard_pinned_dependencies",
                "name": "OpenSSF Scorecard: Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "ai_code_legibility",
            "band": "excellent",
            "name": "Code legibility for models",
            "note": null,
            "notes": [],
            "value": 80,
            "inputs": {
              "primary_language": "Python",
              "largest_source_bytes": 3419873,
              "source_files_sampled": 195,
              "oversized_source_files": 9
            },
            "components": [
              {
                "key": "type_checkable_code",
                "name": "Type-checkable code",
                "detail": "Python with type-check config (viewer-frontend/tsconfig.json)",
                "points": 27,
                "status": "partial",
                "details": [
                  {
                    "code": "typecheck_config_language",
                    "params": {
                      "files": "viewer-frontend/tsconfig.json",
                      "language": "Python"
                    }
                  }
                ],
                "max_points": 45
              },
              {
                "key": "manageable_file_sizes",
                "name": "Manageable file sizes",
                "detail": "9/195 source files over 60KB",
                "points": 52.5,
                "status": "partial",
                "details": [
                  {
                    "code": "oversized_source_files",
                    "params": {
                      "kb": 60,
                      "sampled": 195,
                      "oversized": 9
                    }
                  }
                ],
                "max_points": 55
              }
            ]
          },
          {
            "key": "ai_interfaces",
            "band": "weak",
            "name": "Machine-readable interfaces",
            "note": null,
            "notes": [],
            "value": 40,
            "inputs": {
              "example_dirs": [
                "examples",
                "notebooks"
              ],
              "has_mcp_signal": false,
              "api_schema_files": []
            },
            "components": [
              {
                "key": "api_schema_openapi_graphql_proto",
                "name": "API schema (OpenAPI/GraphQL/proto)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 40
              },
              {
                "key": "mcp_server",
                "name": "MCP server",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "runnable_examples",
                "name": "Runnable examples",
                "detail": "examples, notebooks",
                "points": 40,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "examples, notebooks"
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          }
        ],
        "description": "How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight: agent tooling is a real maintenance signal, but its absence must never gate the top of the scale (calibration saturates at raw 91, so 100/100 remains reachable with AI Readiness at zero)."
      }
    ],
    "classification": {
      "labels": [
        "library",
        "web-ui"
      ],
      "scores": {
        "web-ui": 4,
        "library": 6
      },
      "primary": "library",
      "evidence": [
        {
          "tier": "distribution",
          "label": "library",
          "source": "registry:pypi",
          "weight": 6
        },
        {
          "tier": "dependencies",
          "label": "web-ui",
          "source": "dep:react-dom",
          "weight": 4
        }
      ],
      "artifacts": [],
      "confidence": "medium",
      "host_extension": false,
      "runs_as_process": true,
      "consumed_by_code": true
    },
    "metrics_version": "2.3.1"
  },
  "warnings": [
    "Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token",
    "deps.dev does not index pypi:moleculekit@1.15.7; advisories assessed against the repository dependency graph instead"
  ],
  "report_type": "repository",
  "generated_at": "2026-07-24T14:06:27.830803Z",
  "schema_version": "0.27.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/a/Acellera/moleculekit.svg",
  "full_name": "Acellera/moleculekit",
  "license_state": "custom",
  "license_spdx": null
}

评分是信号,而非担保。 评分反映的是 GitHub 上公开可见的实践——不是代码审计,也不是安全保证。

缺失数据将被剔除并重新归一化权重,绝不按零分计。方法论已版本化并公开:指标 v2.3.1、模式 v0.27.0—— 完整方法论 · 指标知识库.

单项结果在整体记录中的位置: 汇总统计PyPI.