Öffentliches Register
Software-GesundheitsberichtSchema 0.27.0 · Metriken 2.3.1 · 2026-07-31 20:25 UTC

broadinstitute / gatk-sv

A structural variation pipeline for short-read sequencing

Python · WDL · RBSD-3-Clause★ 206 Sterne⑂ 81 Forksseit Juni 2020Auf GitHub ansehen ↗
ArtWeboberflächewie das ermittelt wird

broadinstitute/gatk-sv erreicht einen Gesundheitsindex von 88 von 100 und liegt damit im Bereich Exzellent. Am stärksten schneidet es bei Vitality (86/100) ab, am schwächsten bei AI Readiness (42/100). Zuletzt heute aktualisiert. 3 Mitwirkende tragen den Großteil der jüngsten Arbeit.

88
gesamt / 100
Exzellent

Software-Gesundheitsindex

Metriken werden auf einer standardisierten Skala von 1–100 in gewichtete Kategorien gruppiert. Der Gesamtwert beginnt als ihr gewichtetes Mittel, kalibriert auf die Verteilung des öffentlichen Registers, sodass die Stufen Perzentilbedeutung tragen; sobald öffentliche Evidenz die Richtlinie für Hochrisikojurisdiktionen auslöst, wird die Bewertung angepasst und erhält die Obergrenze Gefährdet von 34.

88
Außergewöhnlich93-100Die Spitzengruppe des Registers (≈ obere 5 %); erfüllt im Wesentlichen alle geprüften Kriterien
Exzellent80-92Durchgehend stark; geringfügige Lücken
Gut65-79Gesund; Lücken sind begrenzt und beherrschbar
Mittel50-64Akzeptabel mit deutlichen Lücken; Überprüfung empfohlen
Schwach35-49Wesentliche Schwächen in mehreren Bereichen
Gefährdet20-34Erhebliche Schwächen; eine Übernahme erfordert Vorsicht
Kritisch1-19Schwerwiegende Probleme (aufgegeben, nur ein Maintainer, keine Hygiene)
VitalitätCommunity &VerbreitungNachhaltigkeit &GovernanceEngineering-QualitätSicherheitAI Readiness

Bewertungsprofil

Jede Achse ist eine Kategorie. Die Form zählt mehr als der Durchschnitt — ein gesundes Projekt füllt die gesamte Fläche, während ein Profil aus Spitzen und Kratern bedeutet, dass Stärke in einer Dimension Risiken in einer anderen verdeckt.

Der gewichtete Gesamtwert 74 wird auf der veröffentlichten Indexskala auf 88 kalibriert (Register-Kalibrierung 2026-08-02).

Eigentümerschaft

Broad InstituteOrganisation
1.290 Follower1.515 öffentliche Reposseit Sept. 2010

Dieses Repository wird von einer Organisation getragen — geteilte, rechenschaftspflichtige Trägerschaft, die jeden einzelnen Maintainer überdauern kann.

Paket-Ökosysteme

RegistryPaketVersionDownloads / MonatVersionenZuletzt veröffentlicht
PyPIsvtkverweist auf ein anderes Repo — nicht bewertet0.2.0-2vor 1437 Tagen
PyPIsv_utilsverweist auf ein anderes Repo — nicht bewertet0.6.1-5vor 2424 Tagen

Metriken nach Kategorie

Vitalität

Lebt das Projekt — wird Code geschrieben und werden Releases ausgeliefert?

86Exzellent · 21 % des Gesamtindex
Wie die Bewertung erfolgt
36/36Push-Aktualität — letzter Push vor 0 Tagen
18/36Commit-Rhythmus — 26/52 Wochen mit Commits
17.8/18Commit-Volumen — 94 Commits im letzten Jahr
10/10OpenSSF Scorecard: Maintained — 13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
Verwendete Eingangsdaten
commits_last_year94
human_commit_share1
days_since_last_push0
active_weeks_last_year26
Wie die Bewertung erfolgt
27/27Liefert Releases aus — 79 Releases veröffentlicht
36/36Release-Aktualität — letztes Release vor 17 Tagen
19.8/27Release-Rhythmus — ein Release etwa alle 77 Tage
0/10OpenSSF Scorecard: Signed-Releases — keine Daten
Verwendete Eingangsdaten
releases_count79
latest_release_tagv1.1.1
releases_from_tagsnein
days_since_latest_release17
mean_days_between_releases77
Von der Bewertung ausgeschlossen (keine Daten oder nicht anwendbar): OpenSSF Scorecard: Signed-Releases. Die verbleibenden Gewichte wurden renormalisiert.

Community & Verbreitung

Hat das Projekt Nutzer, Downloads, Aufmerksamkeit und ein einladendes Umfeld für Beitragende?

71Gut · 17 % des Gesamtindex
Wie die Bewertung erfolgt
37.5/60Stars — 206 Stars
15.9/25Forks — 81 Forks
5.6/15Watcher — 11 Watcher
Verwendete Eingangsdaten
forks81
stars206
watchers11
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history
Wie die Bewertung erfolgt
22.5/22.5README
22.5/22.5Lizenz — anerkannte Lizenz (BSD-3-Clause)
18/18CONTRIBUTING-Leitfaden
13.5/13.5Verhaltenskodex
0/7.2Issue-Vorlage
0/6.3PR-Vorlage
Verwendete Eingangsdaten
has_readmeja
has_licenseja
readme_badges
has_contributingja
has_issue_templatenein
has_code_of_conductja
readme_badge_services
has_pull_request_templatenein

Nachhaltigkeit & Governance

Überdauert das Projekt die Menschen, die es tragen — Bus-Faktor, Reaktionsfähigkeit, Trägerschaft und Paketpflege?

76Gut · 23 % des Gesamtindex
Wie die Bewertung erfolgt
36/54Bus-Faktor — 3 Beitragende decken die Hälfte aller Commits ab
16.8/22.5Commit-Verteilung — wichtigste beitragende Person verfasste 25 % der Commits
13.5/13.5Breite der Beitragenden — 20 Beitragende
10/10OpenSSF Scorecard: Contributors — project has 8 contributing companies or organizations
Verwendete Eingangsdaten
bus_factor3
contributors_sampled20
top_contributor_share0,254
Wie die Bewertung erfolgt
26.8/42Issue-Lösungsquote — 64 % der Issues geschlossen
26.2/30PR-Annahme — 560/641 entschiedene PRs gemergt
0/13Newcomer PR acceptance — kein PR eines Erstbeitragenden in 30 Tagen entschieden
12/15OpenSSF Scorecard: Code-Review — Found 25/30 approved changesets -- score normalized to 8
Verwendete Eingangsdaten
merged_prs560
open_issues99
closed_issues174
prs_merged_7d
prs_decided_7d
prs_merged_30d
prs_decided_30d
issue_closed_ratio0,637
closed_unmerged_prs81
first_time_authors_30d
first_time_prs_merged_30d
first_time_prs_decided_30d
Von der Bewertung ausgeschlossen (keine Daten oder nicht anwendbar): newcomer_pr_acceptance. Die verbleibenden Gewichte wurden renormalisiert.
Wie die Bewertung erfolgt
30/30Organisatorische Trägerschaft — im Besitz einer Organisation
0/20Verifizierte Domain
22.4/25Reichweite des Inhabers — 1.290 Follower von broadinstitute
25/25Kontohistorie — 1.515 öffentliche Repos, Kontoalter ca. 15 Jahre
Verwendete Eingangsdaten
followers1.290
owner_typeOrganization
is_verified
owner_loginbroadinstitute
public_repos1.515
account_age_days5.804

Engineering-Qualität

Sind grundlegende Engineering- und Dokumentationspraktiken vorhanden?

76Gut · 19 % des Gesamtindex
Wie die Bewertung erfolgt
24/24CI-Workflows — 5 Workflow(s)
24/24Tests vorhanden
16/16Linter-Konfiguration — tox.ini
0/9.6Pre-Commit-Hooks
0/6.4.editorconfig
20/20OpenSSF Scorecard: CI-Tests — 25 out of 25 merged PRs checked by a CI test -- score normalized to 10
Verwendete Eingangsdaten
has_cija
has_testsja
has_editorconfignein
has_linter_configja
has_precommit_confignein
Wie die Bewertung erfolgt
30/30README
0/25Dokumentationsverzeichnis
15/15Dokumentations-/Homepage-Site — https://broadinstitute.github.io/gatk-sv/
10/10Repository-Beschreibung
10/10Topics — 4 Topics
0/10Wiki
Verwendete Eingangsdaten
topicsgenomics, structural-variants, structural-variation, bioinformatics
has_wikinein
homepagehttps://broadinstitute.github.io/gatk-sv/
has_readmeja
has_docs_dirnein
has_descriptionja

Sicherheit

Sind die sichtbaren Sicherheits- und Lieferkettenpraktiken belastbar, ohne ungeklärte Exposition gegenüber Hochrisikojurisdiktionen?

65Gut · 16 % des Gesamtindex
Wie die Bewertung erfolgt
6.8/7.5Binary-Artifacts — binaries present in source code
0/7.5Branch-Protection — keine Daten
2.5/2.5CI-Tests — 25 out of 25 merged PRs checked by a CI test -- score normalized to 10
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
6/7.5Code-Review — Found 25/30 approved changesets -- score normalized to 8
2.5/2.5Contributors — project has 8 contributing companies or organizations
10/10Dangerous-Workflow — no dangerous workflow patterns detected
0/7.5Dependency-Update-Tool — no update tool detected
0/5Fuzzing — project is not fuzzed
2.5/2.5Lizenz — license file detected
7.5/7.5Maintained — 13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
0/5Packaging — keine Daten
0/5Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
2.5/5SAST — SAST tool is not run on all commits -- score normalized to 5
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — keine Daten
0/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
7.5/7.5Vulnerabilities — 0 existing vulnerabilities detected
Verwendete Eingangsdaten
sourceopenssf_scorecard
checks_evaluated15
scorecard_versionv5.5.0
checks_inconclusive3
scorecard_aggregate5,6
Von der Bewertung ausgeschlossen (keine Daten oder nicht anwendbar): branch_protection, packaging, signed_releases. Die verbleibenden Gewichte wurden renormalisiert.

Abhängigkeits-Advisories

100Außergewöhnlich
Wie die Bewertung erfolgt
35/35Direkte Abhängigkeiten ohne bekannte Advisories — keine direkte Abhängigkeit trägt ein bekanntes Advisory
25/25Indirekte Abhängigkeiten ohne bekannte Advisories — keine indirekte Abhängigkeit trägt ein bekanntes Advisory
0/40Keine offenen Advisories — kein Advisory trägt ein Veröffentlichungsdatum
Verwendete Eingangsdaten
sourceosv
advisories0
affected_packages0
assessed_packages12
unassessed_packages0
affected_by_severitynone
direct_affected_packages0
Von der Bewertung ausgeschlossen (keine Daten oder nicht anwendbar): Keine offenen Advisories. Die verbleibenden Gewichte wurden renormalisiert. Abgeglichen wurde die Laufzeit-Abhängigkeitshülle von pypi:svtk@0.2.0 — das, was die Installation des veröffentlichten Pakets nach sich zieht — mit 12 Paketen. Erreichbarkeit wird nicht analysiert.

AI Readiness

Wie gut ist das Repository dafür ausgestattet, mit KI-Coding-Agenten entwickelt und gepflegt zu werden? Trägt ein bewusst kleines Gewicht (4 %): Agenten-Tooling ist ein echtes Pflegesignal, doch ein Repository ohne jedes Signal kann weiterhin 100/100 erreichen.

42Schwach · 4 % des Gesamtindex
Wie die Bewertung erfolgt
0/45Agentenanweisungen — keine CLAUDE.md / AGENTS.md / Editor-Regeln
0/15Maschinenlesbare Doku (llms.txt)
37.3/40Lesbare Commit-Historie — 70 von 100 menschlichen Commits benennen ihre Absicht (strukturierter Betreff oder erläuternder Text)
Verwendete Eingangsdaten
has_llms_txtnein
legible_history_share0,7
agent_instruction_files
agent_instruction_max_bytes
Wie die Bewertung erfolgt
0/18Bootstrap mit einem Befehl
22/22Automatisierte Tests
11/11Lint-/Format-Konfiguration — tox.ini
0/11Statische Typprüfung
10/10Reproduzierbare Umgebung — Dockerfile
0/10Belegte Agentenpraxis — keine von Agenten verfassten Commits unter den letzten 100
0/8Automatisierte Wartung — keine automatisierten Abhängigkeits-Updates beobachtet
0/10OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
Verwendete Eingangsdaten
has_nixnein
has_testsja
lockfiles
has_dockerfileja
typed_languagenein
bootstrap_files
has_devcontainernein
has_linter_configja
typecheck_configs
agent_commit_share0
toolchain_manifests
dependency_bot_commit_share0
Wie die Bewertung erfolgt
0/45Typprüfbarer Code — Python ohne Typprüfungs-Konfiguration
54.4/55Handhabbare Dateigrößen — 3/255 Quelldateien über 60 KB
Verwendete Eingangsdaten
primary_languagePython
largest_source_bytes120.131
source_files_sampled255
oversized_source_files3
Wie die Bewertung erfolgt
0/40API-Schema (OpenAPI/GraphQL/proto)
0/20MCP-Server
40/40Lauffähige Beispiele — notebooks
Verwendete Eingangsdaten
example_dirsnotebooks
has_mcp_signalnein
api_schema_files

Eckdaten

206GitHub-Sterne
20Mitwirkende
94Commits, letzte 12 Monate
0Tage seit letztem Push
79Releases
3Bus-Faktor
99offene Issues
npmPaket-Ökosysteme

Warnungen zur Datenerhebung

  • Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
  • Could not fetch pypi package 'svqc' from its registry
  • pypi package 'svtk' points at a different repository (https://github.com/simleek/displayarray); excluded from ecosystem scoring
  • Could not fetch pypi package 'svtest' from its registry
  • pypi package 'sv_utils' points at a different repository (https://github.com/friend1ws/sv_utils); excluded from ecosystem scoring

Weitere Details

Stern- und Fork-Verlauf 0 ★ / 81 ⇿
0Sterne
81Forks
76Releases

Wann jeder Stern und Fork hinzugefügt wurde, von GitHub erfasst und nach Tagen gruppiert. Das kumulierte Wachstum steht direkt über den täglichen Zugängen, aus denen es besteht, sodass beide gegeneinander lesbar sind: stetiger organischer Zuwachs sieht ganz anders aus als ein abrupter, kurzlebiger Ausschlag. Wo dieser Unterschied messbar ist, wird er als Wachstumsauthentizität ausgewiesen.

0204060808032020-072023-072026-07
Major 0Minor 0Patch 5

Jeder Punkt umfasst 6 Tage.

OpenSSF Scorecard 5.6 / 10
5.6Gesamtwert

Unabhängige, werkzeugneutrale Sicherheitsbewertung durch das quelloffene OpenSSF Scorecard. Jede Prüfung honoriert eine Sicherheits-Praxis, nicht das Werkzeug eines bestimmten Anbieters. Prüfungen, die Scorecard nicht ermitteln konnte, sind mit k. A. markiert und vom Sicherheitswert ausgeschlossen (nie als null gezählt).Scorecard v5.5.0 · 2026-07-31 20:24 UTC

9Binary-Artifactsbinaries present in source code
k. A.Branch-Protectioninternal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md
10CI-Tests25 out of 25 merged PRs checked by a CI test -- score normalized to 10
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
8Code-ReviewFound 25/30 approved changesets -- score normalized to 8
10Contributorsproject has 8 contributing companies or organizations
10Dangerous-Workflowno dangerous workflow patterns detected
0Dependency-Update-Toolno update tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
10Maintained13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
k. A.Packagingpackaging workflow not detected
0Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 0
5SASTSAST tool is not run on all commits -- score normalized to 5
0Security-Policysecurity policy file not detected
k. A.Signed-Releasesno releases found
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
10Vulnerabilities0 existing vulnerabilities detected
Direkte Abhängigkeiten 9
RegistryPaketVersionsvorgabeManifest
npm@docusaurus/core^3.10.1website/package.json
npm@docusaurus/plugin-google-gtag^3.10.1website/package.json
npm@docusaurus/preset-classic^3.10.1website/package.json
npm@docusaurus/theme-mermaid^3.10.1website/package.json
npm@mdx-js/react^3.0.0website/package.json
npmclsx^2.0.0website/package.json
npmprism-react-renderer^2.3.0website/package.json
npmreact^18.0.0website/package.json
npmreact-dom^18.0.0website/package.json
Alle Abhängigkeiten 38

Vollständig aufgelöster Abhängigkeitssatz aus dem GitHub-Abhängigkeitsgraphen: 9 direkte und 29 indirekte (transitive) Pakete. Die transitive Hülle ist vollständig, wenn das Repository eine Lockfile eincheckt.

RegistryPaketVersionBeziehung
npm@docusaurus/core^3.10.1direkt
npm@docusaurus/plugin-google-gtag^3.10.1direkt
npm@docusaurus/preset-classic^3.10.1direkt
npm@docusaurus/theme-mermaid^3.10.1direkt
npm@mdx-js/react^3.0.0direkt
npmclsx^2.0.0direkt
npmprism-react-renderer^2.3.0direkt
npmreact^18.0.0direkt
npmreact-dom^18.0.0direkt
npm@docusaurus/module-type-aliases^3.10.1indirekt
npm@docusaurus/types^3.10.1indirekt
PyPIargparseindirekt
PyPIclickindirekt
PyPIcythonindirekt
PyPIdillindirekt
PyPIintervaltreeindirekt
PyPIjsonschemaindirekt
PyPImatplotlibindirekt
PyPImultiprocessing-loggingindirekt
PyPInatsortindirekt
PyPInoseindirekt
PyPInumpyindirekt
PyPIopenpyxlindirekt
PyPIpandasindirekt
PyPIplotlyindirekt
PyPIpsutilindirekt
PyPIpybedtoolsindirekt
PyPIpymplerindirekt
PyPIpysamindirekt
PyPIrequestsindirekt
PyPIscipyindirekt
PyPIseabornindirekt
PyPIsetuptoolsindirekt
PyPIstatsmodelsindirekt
PyPItqdmindirekt
PyPIurllib3indirekt
PyPIwheelindirekt
PyPIxlsxwriterindirekt
Abhängigkeits-Advisories 0

Die Installation von pypi:svtk@0.2.0 zieht 12 Pakete nach sich, direkt und transitiv: 0 tragen bekannte Advisories, davon 0 direkte Abhängigkeiten.

Keine bekannten Advisories betreffen die bewerteten Abhängigkeiten.

Ein Advisory bedeutet, dass die im Abhängigkeitsgraphen erfasste Version in den betroffenen Bereich eines Advisories fällt. Erreichbarkeit wird nicht analysiert, und der Graph enthält Entwicklungs- und Test-Pins — ein Fund kann das Werkzeug betreffen und nicht die ausgelieferte Software.

JSON-Rohbericht maschinenlesbar
{
  "data": {
    "repo": {
      "topics": [
        "genomics",
        "structural-variants",
        "structural-variation",
        "bioinformatics"
      ],
      "is_fork": false,
      "size_kb": 163376,
      "has_wiki": false,
      "homepage": "https://broadinstitute.github.io/gatk-sv/",
      "languages": {
        "R": 716788,
        "CSS": 4550,
        "WDL": 1282298,
        "Java": 65062,
        "Shell": 632788,
        "Cython": 1238,
        "Python": 1881457,
        "Dockerfile": 60441,
        "JavaScript": 14252,
        "Go Template": 229656,
        "Jupyter Notebook": 199591
      },
      "pushed_at": "2026-07-31T19:28:45Z",
      "created_at": "2020-06-18T20:52:07Z",
      "owner_type": "Organization",
      "updated_at": "2026-07-30T17:08:27Z",
      "description": "A structural variation pipeline for short-read sequencing",
      "is_archived": false,
      "is_disabled": false,
      "license_spdx": "BSD-3-Clause",
      "default_branch": "main",
      "license_spdx_raw": "BSD-3-Clause",
      "primary_language": "Python",
      "significant_languages": [
        "Python",
        "WDL",
        "R",
        "Shell"
      ]
    },
    "owner": {
      "blog": "http://www.broadinstitute.org/",
      "name": "Broad Institute",
      "type": "Organization",
      "login": "broadinstitute",
      "company": null,
      "location": "Cambridge, MA",
      "followers": 1290,
      "avatar_url": "https://avatars.githubusercontent.com/u/393552?v=4",
      "created_at": "2010-09-09T16:37:46Z",
      "is_verified": null,
      "public_repos": 1515,
      "account_age_days": 5804
    },
    "license": {
      "state": "standard",
      "spdx_id": "BSD-3-Clause",
      "raw_spdx": "BSD-3-Clause",
      "file_present": true,
      "scorecard_found": true,
      "profile_has_license": true
    },
    "activity": {
      "releases": [
        {
          "tag": "v1.1.1",
          "kind": "patch",
          "published_at": "2026-07-13T21:54:04Z"
        },
        {
          "tag": "v1.1",
          "kind": "other",
          "published_at": "2025-09-04T15:52:32Z"
        },
        {
          "tag": "v1.0.5",
          "kind": "patch",
          "published_at": "2025-07-01T16:22:51Z"
        },
        {
          "tag": "v1.0.4",
          "kind": "patch",
          "published_at": "2025-05-22T17:40:39Z"
        },
        {
          "tag": "v1.0.3",
          "kind": "patch",
          "published_at": "2025-04-14T19:55:56Z"
        },
        {
          "tag": "v1.0.2-hotfix",
          "kind": "prerelease",
          "published_at": "2025-02-10T17:26:57Z"
        },
        {
          "tag": "v1.0.2",
          "kind": "patch",
          "published_at": "2025-02-06T16:40:19Z"
        },
        {
          "tag": "v1.0.1",
          "kind": "patch",
          "published_at": "2024-11-21T20:45:06Z"
        },
        {
          "tag": "v1.0",
          "kind": "other",
          "published_at": "2024-10-31T15:59:49Z"
        },
        {
          "tag": "v0.29-beta",
          "kind": "other",
          "published_at": "2024-08-19T16:57:14Z"
        },
        {
          "tag": "v0.28.5-beta",
          "kind": "prerelease",
          "published_at": "2024-05-02T19:31:09Z"
        },
        {
          "tag": "v0.28.4-beta",
          "kind": "prerelease",
          "published_at": "2023-10-23T19:28:00Z"
        },
        {
          "tag": "v0.28.3-beta",
          "kind": "prerelease",
          "published_at": "2023-08-21T19:15:38Z"
        },
        {
          "tag": "v0.28.2-beta",
          "kind": "prerelease",
          "published_at": "2023-08-08T17:50:53Z"
        },
        {
          "tag": "v0.28.1-beta",
          "kind": "prerelease",
          "published_at": "2023-06-28T17:03:53Z"
        },
        {
          "tag": "v0.28-beta",
          "kind": "other",
          "published_at": "2023-06-27T16:20:27Z"
        },
        {
          "tag": "v0.27.3-beta",
          "kind": "prerelease",
          "published_at": "2023-05-08T18:29:50Z"
        },
        {
          "tag": "v0.27.2-beta",
          "kind": "prerelease",
          "published_at": "2023-05-01T18:25:12Z"
        },
        {
          "tag": "v0.27.1-beta",
          "kind": "prerelease",
          "published_at": "2023-03-16T17:06:29Z"
        },
        {
          "tag": "v0.27-beta",
          "kind": "other",
          "published_at": "2023-03-15T17:38:48Z"
        },
        {
          "tag": "v0.26.10-beta",
          "kind": "prerelease",
          "published_at": "2023-03-02T02:53:33Z"
        },
        {
          "tag": "v0.26.9-beta",
          "kind": "prerelease",
          "published_at": "2023-02-02T20:33:54Z"
        },
        {
          "tag": "v0.26.8-beta",
          "kind": "prerelease",
          "published_at": "2023-01-05T16:00:58Z"
        },
        {
          "tag": "v0.26.7-beta",
          "kind": "prerelease",
          "published_at": "2022-12-19T15:55:09Z"
        },
        {
          "tag": "v0.26.6-beta",
          "kind": "prerelease",
          "published_at": "2022-12-15T17:44:15Z"
        },
        {
          "tag": "v0.26.5-beta",
          "kind": "prerelease",
          "published_at": "2022-11-30T20:30:33Z"
        },
        {
          "tag": "v0.26.4-beta",
          "kind": "prerelease",
          "published_at": "2022-10-12T15:45:53Z"
        },
        {
          "tag": "v0.26.3-beta",
          "kind": "prerelease",
          "published_at": "2022-09-27T23:09:01Z"
        },
        {
          "tag": "v0.26.2-beta",
          "kind": "prerelease",
          "published_at": "2022-09-22T16:59:17Z"
        },
        {
          "tag": "v0.26.1-beta",
          "kind": "prerelease",
          "published_at": "2022-09-19T17:07:22Z"
        },
        {
          "tag": "v0.26-beta",
          "kind": "other",
          "published_at": "2022-09-16T14:40:01Z"
        },
        {
          "tag": "v0.25.1-beta",
          "kind": "prerelease",
          "published_at": "2022-09-08T16:11:41Z"
        },
        {
          "tag": "v0.25-beta",
          "kind": "other",
          "published_at": "2022-08-26T19:07:00Z"
        },
        {
          "tag": "v0.24.3-beta",
          "kind": "prerelease",
          "published_at": "2022-08-22T19:41:11Z"
        },
        {
          "tag": "v0.24.2-beta",
          "kind": "prerelease",
          "published_at": "2022-08-18T18:48:26Z"
        },
        {
          "tag": "v0.24.1-beta",
          "kind": "prerelease",
          "published_at": "2022-08-10T16:50:05Z"
        },
        {
          "tag": "v0.24-beta",
          "kind": "other",
          "published_at": "2022-07-28T15:49:27Z"
        },
        {
          "tag": "v0.23-beta",
          "kind": "other",
          "published_at": "2022-05-04T19:30:12Z"
        },
        {
          "tag": "v0.22-beta",
          "kind": "other",
          "published_at": "2022-04-29T20:37:23Z"
        },
        {
          "tag": "v0.9.1-beta-hotfix2",
          "kind": "prerelease",
          "published_at": "2022-04-14T18:48:44Z"
        },
        {
          "tag": "v0.21-beta",
          "kind": "other",
          "published_at": "2022-04-13T18:38:42Z"
        },
        {
          "tag": "v0.20.2-beta",
          "kind": "prerelease",
          "published_at": "2022-02-11T16:49:38Z"
        },
        {
          "tag": "v0.20.1-beta",
          "kind": "prerelease",
          "published_at": "2022-02-03T19:40:21Z"
        },
        {
          "tag": "v0.20-beta",
          "kind": "other",
          "published_at": "2022-02-03T19:38:09Z"
        },
        {
          "tag": "v0.19.4-beta",
          "kind": "prerelease",
          "published_at": "2022-01-14T18:04:18Z"
        },
        {
          "tag": "v0.19.3-beta",
          "kind": "prerelease",
          "published_at": "2021-12-21T20:17:01Z"
        },
        {
          "tag": "v0.19.2-beta",
          "kind": "prerelease",
          "published_at": "2021-11-29T22:28:17Z"
        },
        {
          "tag": "v0.19.1-beta",
          "kind": "prerelease",
          "published_at": "2021-11-15T23:02:01Z"
        },
        {
          "tag": "v0.19-beta",
          "kind": "other",
          "published_at": "2021-11-15T22:15:32Z"
        },
        {
          "tag": "v0.18.5-beta",
          "kind": "prerelease",
          "published_at": "2021-10-29T17:00:51Z"
        },
        {
          "tag": "v0.18.4-beta",
          "kind": "prerelease",
          "published_at": "2021-10-19T22:57:18Z"
        },
        {
          "tag": "v0.18.3-beta",
          "kind": "prerelease",
          "published_at": "2021-10-18T21:01:00Z"
        },
        {
          "tag": "v0.18.2-beta",
          "kind": "prerelease",
          "published_at": "2021-09-28T15:35:05Z"
        },
        {
          "tag": "v0.18.1-beta",
          "kind": "prerelease",
          "published_at": "2021-09-17T16:33:25Z"
        },
        {
          "tag": "v0.18-beta",
          "kind": "other",
          "published_at": "2021-09-14T20:52:14Z"
        },
        {
          "tag": "v0.17.4-beta",
          "kind": "prerelease",
          "published_at": "2021-09-03T22:08:59Z"
        },
        {
          "tag": "v0.17.3-beta",
          "kind": "prerelease",
          "published_at": "2021-09-03T18:48:02Z"
        },
        {
          "tag": "v0.17.2-beta",
          "kind": "prerelease",
          "published_at": "2021-08-30T19:21:44Z"
        },
        {
          "tag": "v0.17.1-beta",
          "kind": "prerelease",
          "published_at": "2021-08-16T20:28:27Z"
        },
        {
          "tag": "v0.17-beta",
          "kind": "other",
          "published_at": "2021-08-16T19:34:23Z"
        },
        {
          "tag": "v0.16-beta",
          "kind": "other",
          "published_at": "2021-07-27T05:53:10Z"
        },
        {
          "tag": "v0.15.1-beta",
          "kind": "prerelease",
          "published_at": "2021-06-28T14:31:19Z"
        },
        {
          "tag": "v0.15-beta-hotfix",
          "kind": "other",
          "published_at": "2021-06-15T21:42:06Z"
        },
        {
          "tag": "v0.15-beta",
          "kind": "other",
          "published_at": "2021-06-15T18:42:49Z"
        },
        {
          "tag": "v0.14.3-beta",
          "kind": "prerelease",
          "published_at": "2021-05-18T16:36:48Z"
        },
        {
          "tag": "v0.14.2-beta",
          "kind": "prerelease",
          "published_at": "2021-05-14T16:58:52Z"
        },
        {
          "tag": "v0.14.1-beta",
          "kind": "prerelease",
          "published_at": "2021-05-07T20:03:17Z"
        },
        {
          "tag": "v0.14-beta",
          "kind": "other",
          "published_at": "2021-04-20T17:19:14Z"
        },
        {
          "tag": "v0.13.1-beta",
          "kind": "prerelease",
          "published_at": "2021-03-18T21:06:41Z"
        },
        {
          "tag": "v0.13-beta",
          "kind": "other",
          "published_at": "2021-03-02T21:48:10Z"
        },
        {
          "tag": "v0.12-beta",
          "kind": "other",
          "published_at": "2021-02-02T19:40:26Z"
        },
        {
          "tag": "v0.11-beta",
          "kind": "other",
          "published_at": "2020-11-20T21:07:04Z"
        },
        {
          "tag": "v0.9.1-beta-hotfix",
          "kind": "prerelease",
          "published_at": "2020-10-16T15:52:53Z"
        },
        {
          "tag": "v0.10-beta",
          "kind": "other",
          "published_at": "2020-10-16T13:08:43Z"
        },
        {
          "tag": "v0.9.1-beta",
          "kind": "prerelease",
          "published_at": "2020-10-07T19:07:05Z"
        },
        {
          "tag": "v0.9-beta",
          "kind": "other",
          "published_at": "2020-09-14T19:40:00Z"
        },
        {
          "tag": "v0.8.3-beta",
          "kind": "prerelease",
          "published_at": "2020-07-10T15:42:42Z"
        },
        {
          "tag": "v0.8.2-beta",
          "kind": "prerelease",
          "published_at": "2020-07-01T19:03:54Z"
        },
        {
          "tag": "v0.8.1-beta",
          "kind": "prerelease",
          "published_at": "2020-06-30T15:02:32Z"
        }
      ],
      "recent_commits": [
        {
          "oid": "0ccbe08ec7f90cdc8ff5bc81749ec7245c48bf8b",
          "body": null,
          "is_bot": false,
          "headline": "Add SV-Shell docs. (#951)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-07-30T17:05:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c67283d4039f23d496901fe7de0cd027e1102a9b",
          "body": null,
          "is_bot": false,
          "headline": "update license with current year (#944)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2026-07-07T17:40:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "84573c4fe99565e63fefa603c4b5715ea6ce26ca",
          "body": null,
          "is_bot": false,
          "headline": "Add DRAGEN SVs to SV-Shell  (#939)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-06-10T19:52:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0fa5f602339ffe12dadf0495ebdd2700df1fa819",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 24f0fd08",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2026-06-02T16:49:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "24f0fd08a57521c1412cc631fb1fb41903cb46a6",
          "body": null,
          "is_bot": false,
          "headline": "Add STRipy to joint calling (#938)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2026-06-02T16:40:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b61d309109b1b8ce428019db64a9c7443e04064c",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 0639be96",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2026-05-30T13:56:22Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0639be96051665eb059e12a3ad7729396a70a548",
          "body": null,
          "is_bot": false,
          "headline": "Fix stale docker builds (#940)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2026-05-30T11:23:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "51e1cd231ebcbfaebbf8d35e0ae040fee8f555a4",
          "body": null,
          "is_bot": false,
          "headline": "Update python version in pytest action (#929)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-05-19T15:04:30Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2d44e3775026fd608f0d9628f34a468d1b7dbb88",
          "body": null,
          "is_bot": false,
          "headline": "Update Docusarus version & dependencies (#941)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-05-18T22:18:15Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a992b6e5832dafa9cbc723b1196bc5f367a19b38",
          "body": "… (#859)",
          "is_bot": false,
          "headline": "Remove outdated code and documentation related to evidence assessment…",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2026-05-15T19:08:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b44a111f0a1e5b09e08a14e297546ea93bcddc06",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 3be4e152",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2026-05-15T18:20:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "74cb7f14da2e32eebb0bb4130990cf2affd4271b",
          "body": null,
          "is_bot": false,
          "headline": "SV-Shell WDL  (#933)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-05-14T15:31:23Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3be4e15227b1bb450db9038189808382cfebe250",
          "body": null,
          "is_bot": false,
          "headline": "Fix Stripy VCF sample ID (#937)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2026-05-13T22:22:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7eb2af1feea9f81a390caff211f6832c6e7f7ac5",
          "body": null,
          "is_bot": false,
          "headline": "input template updates to accommodate scoregenotypes (#930)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2026-04-01T18:38:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "767780624ac0f97224b959f45b42ebcf53b95ece",
          "body": null,
          "is_bot": false,
          "headline": "Ensure logging to both stdout & stderr in sv-shell (#932)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-03-27T14:59:06Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a12d65c43ea8c2463aa02daa95f340eb01901fe6",
          "body": null,
          "is_bot": false,
          "headline": "Remove working directories after task completion  (#926)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-03-11T18:51:16Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "64798a758fa5d17266c99cdb95c55dadeb973bb6",
          "body": null,
          "is_bot": false,
          "headline": "Run cnmops on chromosome arms separately  (#925)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-03-11T16:14:42Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "689eb83ed1e2877cd152be613c2e7b5cb280f2f3",
          "body": null,
          "is_bot": false,
          "headline": "Update sv-shell docker. (#923)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-27T17:02:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "256a1c70682a1715a0175a9b47558113c0c8da18",
          "body": null,
          "is_bot": false,
          "headline": "Add a GitHub action to enforce readonly files (#922)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-25T15:12:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5c020b4d9cba01ccc12f9d6acfbe17eea4798aae",
          "body": null,
          "is_bot": false,
          "headline": "Add single-sample pipeline to sv-shell (#887)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-19T20:39:16Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a0cec9288c4992d6a1785f988520709cf4ab5052",
          "body": "…es (#921)",
          "is_bot": false,
          "headline": "Sync sv-shell implementation of `MakeCohortVcf` with recent WDL updat…",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-11T17:04:43Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0c82b2820229069e7aa05c9d6e44bf09e8756b3e",
          "body": null,
          "is_bot": false,
          "headline": "Implement the `GenotypeSVs` task in sv-shell (#920)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-11T17:04:14Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4e0d854c8c527cb5ec8041034c5258ebb136c663",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 797b7604",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2026-02-06T23:27:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "797b760468d9dba80610c51aeaa9b71506363ab6",
          "body": null,
          "is_bot": false,
          "headline": "Migrate genotyping to GATK (#917)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2026-02-06T23:19:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b9b982261ca473a840295173db8851779d9c79c3",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 629c81be",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2026-02-06T21:12:40Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "629c81be2e015be687868e8f8651a0815041c905",
          "body": null,
          "is_bot": false,
          "headline": "Implements the `MakeCohortVcf` workflow in sv-shell (#907)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-06T20:56:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2008dd47bff454152e56148f0f0a58eea683aba0",
          "body": null,
          "is_bot": false,
          "headline": "Update sv_pipeline_docker.yml (#916)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-04T19:20:40Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "82a75e4333e4dc5007ae7c81587ea05f09812d56",
          "body": null,
          "is_bot": false,
          "headline": "Delete inputs/values/dockers_azure.json (#914)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-03T23:50:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "10d2d8113616fcb691081d2c61dd22cb1e260586",
          "body": null,
          "is_bot": false,
          "headline": "Migrate CleanVcf into GATK (#912)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2026-02-03T21:44:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3c3e7e622d045502c4eec412061f88ebda4011c8",
          "body": null,
          "is_bot": false,
          "headline": "fix file path for binned CN plots in accordance with #858 (#905)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2026-01-29T22:00:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a1be457d487a8720c13dfad68edcf5d802a77b5a",
          "body": null,
          "is_bot": false,
          "headline": "Replace root with an env variable in sv-shell scripts (#911)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-01-29T18:20:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f793bf81f56d5979f9933eb2d9df556b11a5d5a4",
          "body": "…904)\n\n* Hardcode `noAddress: true` in GatherSampleEvidence & in the workflows it calls.\n\n* Enable noAddress in remaining gse tasks.\n\n* Enable noAddress in exec path of TrainGCNV\n\n* Enable noAddress in exec path of genotype batch\n\n* Revert \"Enable noAddress in exec path of genotype batch\"\n\nThis reverts commit dbdc91fb68c300984f55bda7356b782345baeff5.\n\n* Enable noAddress in exec path of the gather batch evidence workflow.\n\n* test\n\n* undo test\n\n* add noaddress to gcnv case\n\n* test\n\n* undo test",
          "is_bot": false,
          "headline": "Disable using external IP address in workflows with wide scatters  (#…",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-01-29T18:17:50Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "41507c7932e0325abfd28780a531cf0e6c4b7671",
          "body": "Co-authored-by: VJalili <VJalili@users.noreply.github.com>",
          "is_bot": false,
          "headline": "Scaling updates for GatherSampleEvidence (#906)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2026-01-28T21:41:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f601620151930d2bcad3c278add440c52ebf32ec",
          "body": null,
          "is_bot": false,
          "headline": "Add stripy to sv-shell (#909)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-01-28T16:24:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b042fba2bb5a01c586f8ae05f57aaa2963101594",
          "body": null,
          "is_bot": false,
          "headline": "Add the sv-shell equivalent of the single-sample-metrics workflow (#908)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-01-22T18:15:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3e01e2445643665e0a8f41d58967dcca1cae64a3",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 5b84101e",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-12-18T20:58:39Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5b84101e9c6ad21ec03dade149e83dcb07de4e96",
          "body": null,
          "is_bot": false,
          "headline": "Implement the refine complex variants workflow in sv-shell (#900)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-12-18T20:22:27Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9d805bcc528194927745fb81333e73c6bad287d9",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by a06f272a",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-12-18T19:38:38Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a06f272aea282608d2e5337856f029175e9fb67b",
          "body": null,
          "is_bot": false,
          "headline": "Trivial change to trigger docker build (#902)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-12-18T19:19:57Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cc7e9115a61786e525cb4751f3e5a6f942e672c1",
          "body": null,
          "is_bot": false,
          "headline": "Revert dockstore and docker configs (#901)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-12-18T17:54:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2d5d8a44802548a184d7e57bcc967d2e611e8349",
          "body": null,
          "is_bot": false,
          "headline": "New GenerateBatchMetrics workflow (#894)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-12-18T16:23:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e6d0be7f2576a9a0c8f5220baa391d8aeea41a2d",
          "body": null,
          "is_bot": false,
          "headline": "Implement genotype complex variants module for sv-shell  (#899)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-12-18T16:21:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "74e180c736ad625609499238ad97b5e49f75ea04",
          "body": null,
          "is_bot": false,
          "headline": "Add the Resolve Complex Variants workflow to SV-Shell (#897)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-12-11T18:02:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b167c03d96cf4538c1ba9bbcee0f23c66968114e",
          "body": null,
          "is_bot": false,
          "headline": "Implement gCNV case mode in sv-shell (#895)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-12-10T17:32:25Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ddba7112c75a0980ca3c88f803710fd03dd78981",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 76795a82",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-11-19T20:39:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "76795a826422293c30bbc265ddbc202802d19777",
          "body": null,
          "is_bot": false,
          "headline": "Implement the ScoreGenotypes workflow in sv-shell",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-19T20:14:46Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "dc8d35ab5833a75b6f0589ffd4baa106ebd463ac",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by fbe6e8b2",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-11-18T17:33:57Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "fbe6e8b2b3e4d429e2147737ee9bea85b54c8b8a",
          "body": "* draft gatk installation in sv-shell docker.\n\n* Enable sv-shell in build_docker.py",
          "is_bot": false,
          "headline": "Update and enable sv-shell Docker image in Docker automation  (#892)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-18T17:08:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "eab3f4de84c1ba7e3a0171bb518895d1137e6898",
          "body": "* Implement the filter genotypes module in sv-shell.\n\n* syntax bug fix.",
          "is_bot": false,
          "headline": "Implement the `FilterGenotypes` module in sv-shell (#891)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-17T19:00:29Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f4bd1f47e228f52354dbc09471130f213313900f",
          "body": "* Fix mermaid diagram & all link to SL description.\n\n* simplify linking to sl description.",
          "is_bot": false,
          "headline": "Fix mermaid diagram & all link to SL description. (#890)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-17T16:02:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b6b7a5d090b063daa07b13fb7fa0c6db69e48ba5",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 99ad3600",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-11-15T19:07:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "99ad3600f8f2b33bca04b5ea28cd93eea666b760",
          "body": null,
          "is_bot": false,
          "headline": "Implement the SV Annotate module in sv-shell  (#886)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-15T18:57:23Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "798fa19b8abd777557983b1ded984586c73290be",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 7b56c3ac",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-11-14T21:32:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7b56c3ac8f67dfab0291545af10679795781d872",
          "body": null,
          "is_bot": false,
          "headline": "Add STRipy to single-sample workflow (#889)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-11-14T21:19:22Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ad280f6e54f224a82cc8ab7e2a1410ecf95e82a5",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 3ce0ddd4",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-11-14T19:55:53Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3ce0ddd4367f4c26d6d33c0f668739b443922109",
          "body": null,
          "is_bot": false,
          "headline": "Modify genotype filtering to ingest cutoffs from a table  (#864)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-11-14T19:22:08Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8d48278c7b8ab01a7e6d7f6464dd87595860832d",
          "body": null,
          "is_bot": false,
          "headline": "Implement sv concordance tool in sv-shell (#885)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-14T17:01:51Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ecdda8a71f2eefbf6f6d683853675f39696a6e30",
          "body": null,
          "is_bot": false,
          "headline": "Add the JoinRawCalls workflow to sv-shell (#884)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-14T17:00:57Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cb89c92a386f9b657ccaac052d33c02ace7a965d",
          "body": "… (#878)\n\n* Make all wd & output dirs created at the root.\n\n* Make all wd & output dirs created at the root.\n\n* Update gather sample evidence interface.\n\n* Make script paths abs.\n\n* Cleanup.",
          "is_bot": false,
          "headline": "Update sv-shell implementation of the Gather Sample Evidence workflow…",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-14T16:59:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ad4144ed197b2f4a7d3d75b26403a02f1482899f",
          "body": null,
          "is_bot": false,
          "headline": "Enable DRAGEN SV in single sample mode (#875)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-11-14T16:45:06Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "bd8d273b9108d461b59f22634da79dd646ccdb91",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 2a5a9471",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-11-14T16:30:10Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2a5a9471187d3e297c772331ea3460ed70751021",
          "body": null,
          "is_bot": false,
          "headline": "Annotate retrotransposon deletions with a filter tag (#862)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-11-14T16:21:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f4dc9099e1f1c269fa9e67c9d89fa513c673c3d7",
          "body": null,
          "is_bot": false,
          "headline": "Update evidence qc (#888)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-14T15:40:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ecc525989e071a29334d252714d292ce5a558fd7",
          "body": null,
          "is_bot": false,
          "headline": "Remove/update references to MELT (#857)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2025-11-05T20:09:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5a0cd76c4b0228dfde6a1f4c34d3b83335c7bbe5",
          "body": null,
          "is_bot": false,
          "headline": "Add combine batches. (#879)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-04T20:47:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e3cda0b49feae28caddde239218e89a910be9705",
          "body": "…858)",
          "is_bot": false,
          "headline": "analysis vs filtered histograms; put ploidy data in EvQc directory (#…",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2025-11-04T20:10:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "de3cd3c7a1b6bfdb8d66c73e5754f1b5fea68af9",
          "body": "* Draft cluster batch\n\n* Draft cluster PESR\n\n* read contigs.\n\n* Add SV cluster.\n\n* check in\n\n* bug fix\n\n* Add concat vcfs task.\n\n* checkin\n\n* checkin\n\n* checkin\n\n* checkin clustering\n\n* Add exclude interval by interval overlap task.\n\n* Add GatkToSvtkVcf.\n\n* Implement concat vcfs & output section in cluster depth.\n\n* draft cluster batch\n\n* Update cluster batch.",
          "is_bot": false,
          "headline": "Implement cluster batch in sv-shell  (#872)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-04T18:59:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d0d347d3934a323239ea5f4b39cbedabc46be9ce",
          "body": null,
          "is_bot": false,
          "headline": "DeWDLize modules under GatherBatchEvidence (#830)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-04T18:21:25Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f0e2da1bc5ac7848afdf3f32a1d61fce9b48c7c8",
          "body": "…877)",
          "is_bot": false,
          "headline": "add gnomad v4 benchmarking set to resources json and input configs (#…",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2025-11-04T18:12:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7ad73f9f66f5f758ff69462a75fa6d865d3d40a6",
          "body": null,
          "is_bot": false,
          "headline": "Update README.md (#871)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-10-23T18:12:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1991c2cdd81274005fabbb60fafb50097d36081c",
          "body": null,
          "is_bot": false,
          "headline": "Add Google analytics (#876)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-10-22T15:41:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ffad8f67ff75a2e071eaeb4b2f4f31f6cec1c9d7",
          "body": null,
          "is_bot": false,
          "headline": "Fix single-sample stratification config in Cromwell test json (#874)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-10-16T18:56:51Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b5d5049c1327464056e27123442e44c2948c8bda",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 483973d6",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-10-02T20:12:39Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "483973d6db3a8a9ba8fa72c5756a8ab53e7877f4",
          "body": "This PR includes code to refactor VCFs passed through GATK-SV to align it to Pysam's upgraded versions, which do not allow variants to have an END position that is less than its start position. As it stands, VCFs in GATK-SV only use the correct END format starting from the outputs of 13-ResolveCompl\n[…]\n position on the second chromosome, whereas the END field is set to pos. All downstream scripts that consume such VCFs are made to interpret BNDs with appropriate logic based on this updated END2 tag.",
          "is_bot": false,
          "headline": "Update representation of BNDs to be Pysam compatible (#835)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-10-02T19:23:53Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "5af2592e20a8fdcc7fe39d1bea4770b533fdc6b0",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 631368eb",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-09-04T15:43:39Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4fdac8f1da961efc14afee5d028f9ed9788c1fef",
          "body": null,
          "is_bot": false,
          "headline": "Handle zero-length arrays in JoinRawCalls (#865)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2025-09-04T15:15:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e2e78dfb1fb7b436fa4652346ade6e5a5fac2b70",
          "body": "* Update gatk commit.\n\n* Temp test gatk in docker.\n\n* Undo temp test gatk in docker.\n\n* Implement make_bincov_matrix.sh.\n\n* Improve & cleanup make_bincov_matrix.sh.\n\n* Add a sample input JSON for make_bincov_matrix.sh.\n\n* Write outputs to a json file.\n\n* Add an option to make_bincov_matrix to take a\n[…]\nmove blank space\n\n* Clean up & bugfix.\n\n* Clean up.\n\n* Remove inputs not currently needed.\n\n* We discussed to keep detailed logging & not include this option for simplicity.\n\n* Remove unused variable.",
          "is_bot": false,
          "headline": "Implement a bash version of the Evidence QC workflow (#855)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-09-03T19:01:13Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "77e84b755f2845026aa1dfb366454c997015a137",
          "body": null,
          "is_bot": false,
          "headline": "Undo dockstore sync of GenotypeComplexVariants",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-09-03T18:27:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "631368ebc9ce2b55bda12c5aa22fa3e8da90ab31",
          "body": "…ersed deletions (#850)\n\nThis PR is intended to enable passing in a custom breakpoint cutoff for dispersed duplication detection for complex events in GATK-SV. It sets this cutoff as 5000 by default, as opposed to 1000000 in the existing implementation.",
          "is_bot": false,
          "headline": "Enable passing a threshold to govern the window for detection of disp…",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-09-03T01:55:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "074f24b7591ba97982a60eea9a89984d163f92a4",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by f091af0b",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-09-02T19:55:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f091af0be6836446a9118f5db7cc3de9bde44fa6",
          "body": "* Bug fix median coverage\n\n* temp add branch for dockstore synch.\n\n* Remove branch from dockstore sync",
          "is_bot": false,
          "headline": "Bug fix missing sample ID in median coverage (#863)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-09-02T19:25:17Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f8939d8c280d8b17189102ea14e709735c595227",
          "body": null,
          "is_bot": false,
          "headline": "Plot SV counts for all VCFs in FilterBatchSites (#860)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2025-09-02T18:08:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6328e8628be9f1812b5074c1980e41cb709eacc9",
          "body": null,
          "is_bot": false,
          "headline": "Fix code path in EvidenceQc when run_ploidy is false (#854)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-09-02T14:13:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4063060f795e69c1660d9eec713528cd54fac95b",
          "body": "* Disable sv-shell and scramble dockers.\n\n* Set cran repo for the rBLAST package.\n\n* undo sv-shell and scramble disabling.\n\n* disable SV shell and scramble docker images.",
          "is_bot": false,
          "headline": "Disable sv-shell and scramble dockers. (#861)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-08-29T19:24:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d7a0c36ad9c57c844e41d8ddefbd0ebd7d7d57cc",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 697baf80",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-08-15T15:19:30Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2e312b085a4bbfb514ba1aad4dde02c6b1a6d5b7",
          "body": "* Add the de novo pipeline to Dockstore.\n\n* Log stdout and stderr to separate files for each task & record their ET.\n\n* Bug fix input arg assignment.\n\n* Improve logging and recording stderr.\n\n* skip scramble if manta was skipped.\n\n* Bug fix incorrect use of backticks.\n\n* Improve argset portability.\n\n* log xtrace in terminal & stdout logs file.",
          "is_bot": false,
          "headline": "Log stdout and stderr of tasks in `sv_shell` (#843)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-08-15T15:01:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "697baf809a2b7008f84f21d490b31ddf2f5017ad",
          "body": null,
          "is_bot": false,
          "headline": "Update reference genome in depth plots",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-08-15T14:41:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d6ab6e618a9c0a6666affc9e8873dfa4b444fa96",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 2cee07b8",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-08-14T16:37:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2cee07b89b53530c3c35780671ffe608eb12593c",
          "body": null,
          "is_bot": false,
          "headline": "Refactor manta-vcf arg to input-vcf to match recent refactors. (#853)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-08-14T16:05:49Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "25d8034f099c2bccea85e5c09f9331618a80e377",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by c4f44ead",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-08-11T15:10:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c4f44eadf7991dbed4a10e08cd449410dd0a10b3",
          "body": "* Initial commit\n\n* Modified dockstore sync to use correct branch name\n\n* Added dragen-sv params to cohort mode json templates\n\n* Resolved linting errors\n\n* Modified name of json param to pass womtool evaluation test\n\n* Removed dragen-cnv standardizer\n\n* Initial set of responses to PR comments\n\n* Re\n[…]\n\n* Modified argument to use -h rather than -z, which had conflict\n\n* Changed argument name for incorrect input\n\n* Updated param to -q\n\n---------\n\nCo-authored-by: Mark Walker <markw@broadinstitute.org>",
          "is_bot": false,
          "headline": "Enable DRAGEN-SV as a caller in cohort mode (#803)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-08-11T14:36:44Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "e0f0ce96342649386ca9a5b66cce2d6b1b4f3c1e",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 23d17304",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-08-04T16:21:50Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "23d17304dc6d6f01c7780e8efdc024ad67ef4ebd",
          "body": null,
          "is_bot": false,
          "headline": "Single-sample pipeline update (#842)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-08-04T15:54:08Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "93ae61349b4ee6690ff204b458c45778f30cce91",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 9e614379",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-08-01T14:50:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9e614379fe356fa4ada128bd851dc60f9231d23a",
          "body": "…nceQc outputs (#814)\n\n* Integrated CN denoising script\n\n* Added variant counts by chr/svtype to evidenceqc table\n\n* Added EvidenceQC changes to dockstore\n\n* Reorganized qc table script for logical comprehension\n\n* Resolved flake8 linting issues\n\n* Updated to remove duplicates for pivot operation\n\n*\n[…]\ns to QC notebook\n\n* Reduced image dimensions by ~25% and resolution by ~50% - should result in ~35% of original file size\n\n* Use original image size but just reduce resolution\n\n* Remove dockstore sync",
          "is_bot": false,
          "headline": "Add denoised copy number plots and stratified variant counts to Evide…",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-07-31T22:34:02Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "f1f2fccd4d26c9c6ace4a5bc47778d26ab531ad5",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 9d3e7872",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-07-30T18:24:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9d3e787223d8d58a1e8fbdfcabf446c390ccd76f",
          "body": "* Add the de novo pipeline to Dockstore.\n\n* Enable collect PE/SR by default.",
          "is_bot": false,
          "headline": "Enable collect PE/SR by default on sv-shell (#846)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-07-30T18:03:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9483326cdf09ca98cd7e8bfa6401fb6c399f83de",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by f71901e9",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-07-28T16:04:56Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f71901e983e72ef91b063186dfd7807bb1dd961c",
          "body": "* Initial commit - excluded from gCNV training\n\n* corrected syntactical errors\n\n* Created test changes to RD R script\n\n* Satisfied WDL syntax constraints\n\n* Rolled back changes to use filtered_vcfs array\n\n* Removed runtime attribute\n\n* Integrated changes to FilterBatchSites\n\n* Resolve python linting\n[…]\ndate website/docs/modules/generate_batch_metrics.md\n\nCo-authored-by: Mark Walker <markw@broadinstitute.org>\n\n* Removed dockstore sync\n\n---------\n\nCo-authored-by: Mark Walker <markw@broadinstitute.org>",
          "is_bot": false,
          "headline": "Filter outlier samples in TrainGCNV and GenerateBatchMetrics (#717)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-07-28T15:32:39Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "7ae35b417968a982f503f061f922575fdb5ec03e",
          "body": "* Initial commit\n\n* Updated WDL to reflect tool version in latest GATK docker version\n\n* Updated comment regarding clustering params\n\n* Initial commit\n\n* Updated to use more interpretable commands\n\n* Renamed param - was using mark's naming originally\n\n* Resolved syntax errors\n\n* Remove dockstore sync",
          "is_bot": false,
          "headline": "Update SVConcordance.wdl to enable stratified matching (#844)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-07-25T21:17:42Z",
          "body_truncated": false,
          "is_coding_agent": false
        }
      ],
      "releases_count": 79,
      "commits_last_year": 94,
      "latest_release_at": "2026-07-13T21:54:04Z",
      "latest_release_tag": "v1.1.1",
      "releases_from_tags": false,
      "days_since_last_push": 0,
      "active_weeks_last_year": 26,
      "days_since_latest_release": 17,
      "mean_days_between_releases": 77
    },
    "community": {
      "has_readme": true,
      "has_license": true,
      "has_description": true,
      "has_contributing": true,
      "health_percentage": 75,
      "has_issue_template": false,
      "has_code_of_conduct": true,
      "has_pull_request_template": false
    },
    "ecosystem": {
      "packages": [
        {
          "name": "svtk",
          "exists": true,
          "license": "MIT",
          "keywords": [],
          "ecosystem": "pypi",
          "matches_repo": false,
          "registry_url": "https://pypi.org/project/svtk/",
          "is_deprecated": false,
          "latest_version": "0.2.0",
          "repository_url": "https://github.com/simleek/displayarray",
          "versions_count": 2,
          "total_downloads": null,
          "dependents_count": null,
          "deprecation_note": null,
          "maintainers_count": null,
          "monthly_downloads": null,
          "first_published_at": "2019-09-09T01:39:33.450926Z",
          "latest_published_at": "2022-08-23T22:35:36.032196Z",
          "latest_version_yanked": null,
          "days_since_latest_publish": 1437
        },
        {
          "name": "sv_utils",
          "exists": true,
          "license": "GPLv3",
          "keywords": [
            "Development Status :: 4 - Beta",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
            "Operating System :: Unix",
            "Programming Language :: Python :: 2.7",
            "Programming Language :: Python :: 3.6",
            "Programming Language :: Python :: 3.7",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
          ],
          "ecosystem": "pypi",
          "matches_repo": false,
          "registry_url": "https://pypi.org/project/sv_utils/",
          "is_deprecated": false,
          "latest_version": "0.6.1",
          "repository_url": "https://github.com/friend1ws/sv_utils",
          "versions_count": 5,
          "total_downloads": null,
          "dependents_count": null,
          "deprecation_note": null,
          "maintainers_count": null,
          "monthly_downloads": null,
          "first_published_at": "2018-01-11T14:36:46.114770Z",
          "latest_published_at": "2019-12-11T05:51:44.247273Z",
          "latest_version_yanked": null,
          "days_since_latest_publish": 2424
        }
      ]
    },
    "popularity": {
      "forks": 81,
      "stars": 206,
      "watchers": 11,
      "fork_history": {
        "days": [
          {
            "date": "2020-07-03",
            "count": 1
          },
          {
            "date": "2020-07-13",
            "count": 1
          },
          {
            "date": "2020-09-07",
            "count": 1
          },
          {
            "date": "2020-09-22",
            "count": 1
          },
          {
            "date": "2020-10-08",
            "count": 1
          },
          {
            "date": "2020-11-18",
            "count": 1
          },
          {
            "date": "2020-12-17",
            "count": 1
          },
          {
            "date": "2020-12-21",
            "count": 1
          },
          {
            "date": "2021-01-18",
            "count": 1
          },
          {
            "date": "2021-02-15",
            "count": 1
          },
          {
            "date": "2021-02-16",
            "count": 1
          },
          {
            "date": "2021-04-20",
            "count": 1
          },
          {
            "date": "2021-04-22",
            "count": 1
          },
          {
            "date": "2021-04-24",
            "count": 1
          },
          {
            "date": "2021-04-26",
            "count": 1
          },
          {
            "date": "2021-05-25",
            "count": 1
          },
          {
            "date": "2021-06-10",
            "count": 1
          },
          {
            "date": "2021-07-07",
            "count": 1
          },
          {
            "date": "2021-07-09",
            "count": 1
          },
          {
            "date": "2021-08-07",
            "count": 1
          },
          {
            "date": "2021-09-10",
            "count": 1
          },
          {
            "date": "2021-10-08",
            "count": 1
          },
          {
            "date": "2021-10-14",
            "count": 1
          },
          {
            "date": "2021-11-10",
            "count": 1
          },
          {
            "date": "2021-11-15",
            "count": 1
          },
          {
            "date": "2021-12-01",
            "count": 1
          },
          {
            "date": "2021-12-29",
            "count": 1
          },
          {
            "date": "2022-01-02",
            "count": 1
          },
          {
            "date": "2022-01-05",
            "count": 2
          },
          {
            "date": "2022-01-07",
            "count": 1
          },
          {
            "date": "2022-01-10",
            "count": 1
          },
          {
            "date": "2022-02-09",
            "count": 1
          },
          {
            "date": "2022-03-01",
            "count": 1
          },
          {
            "date": "2022-03-03",
            "count": 1
          },
          {
            "date": "2022-04-14",
            "count": 1
          },
          {
            "date": "2022-04-25",
            "count": 2
          },
          {
            "date": "2022-04-30",
            "count": 1
          },
          {
            "date": "2022-05-18",
            "count": 1
          },
          {
            "date": "2022-05-19",
            "count": 1
          },
          {
            "date": "2022-05-25",
            "count": 1
          },
          {
            "date": "2022-07-19",
            "count": 1
          },
          {
            "date": "2022-08-17",
            "count": 1
          },
          {
            "date": "2022-09-30",
            "count": 1
          },
          {
            "date": "2022-11-02",
            "count": 2
          },
          {
            "date": "2022-11-21",
            "count": 1
          },
          {
            "date": "2022-11-22",
            "count": 1
          },
          {
            "date": "2023-01-03",
            "count": 1
          },
          {
            "date": "2023-03-02",
            "count": 1
          },
          {
            "date": "2023-04-18",
            "count": 1
          },
          {
            "date": "2023-04-24",
            "count": 1
          },
          {
            "date": "2023-05-30",
            "count": 1
          },
          {
            "date": "2023-09-06",
            "count": 1
          },
          {
            "date": "2023-10-10",
            "count": 1
          },
          {
            "date": "2023-10-22",
            "count": 1
          },
          {
            "date": "2023-11-09",
            "count": 1
          },
          {
            "date": "2023-12-12",
            "count": 1
          },
          {
            "date": "2023-12-13",
            "count": 1
          },
          {
            "date": "2024-01-08",
            "count": 1
          },
          {
            "date": "2024-02-12",
            "count": 1
          },
          {
            "date": "2024-02-17",
            "count": 1
          },
          {
            "date": "2024-05-28",
            "count": 1
          },
          {
            "date": "2024-12-09",
            "count": 1
          },
          {
            "date": "2025-01-11",
            "count": 1
          },
          {
            "date": "2025-02-11",
            "count": 1
          },
          {
            "date": "2025-02-26",
            "count": 1
          },
          {
            "date": "2025-02-27",
            "count": 1
          },
          {
            "date": "2025-05-20",
            "count": 2
          },
          {
            "date": "2025-08-05",
            "count": 1
          },
          {
            "date": "2025-08-22",
            "count": 1
          },
          {
            "date": "2025-12-22",
            "count": 1
          },
          {
            "date": "2026-04-09",
            "count": 1
          },
          {
            "date": "2026-06-09",
            "count": 1
          },
          {
            "date": "2026-06-14",
            "count": 1
          },
          {
            "date": "2026-06-29",
            "count": 1
          },
          {
            "date": "2026-07-01",
            "count": 1
          },
          {
            "date": "2026-07-07",
            "count": 1
          }
        ],
        "complete": true,
        "collected": 80,
        "total_forks": 81
      },
      "star_history": null,
      "open_issues_and_prs": 131
    },
    "ai_readiness": {
      "has_nix": false,
      "example_dirs": [
        "notebooks"
      ],
      "has_llms_txt": false,
      "has_dockerfile": true,
      "has_mcp_signal": false,
      "bootstrap_files": [],
      "api_schema_files": [],
      "has_devcontainer": false,
      "typecheck_configs": [],
      "toolchain_manifests": [],
      "largest_source_bytes": 120131,
      "source_files_sampled": 255,
      "oversized_source_files": 3,
      "agent_instruction_files": [],
      "agent_instruction_max_bytes": null
    },
    "dependencies": {
      "manifests": [
        "website/package.json"
      ],
      "advisories": {
        "error": null,
        "scope": "published_package",
        "source": "osv",
        "findings": [],
        "collected": true,
        "malicious": [],
        "truncated": false,
        "by_severity": {},
        "advisory_count": 0,
        "affected_count": 0,
        "assessed_count": 12,
        "malicious_count": 0,
        "assessed_package": "pypi:svtk@0.2.0",
        "unassessed_count": 0,
        "direct_affected_count": 0
      },
      "ecosystems": [
        "npm"
      ],
      "dependencies": [
        {
          "name": "@docusaurus/core",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^3.10.1"
        },
        {
          "name": "@docusaurus/plugin-google-gtag",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^3.10.1"
        },
        {
          "name": "@docusaurus/preset-classic",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^3.10.1"
        },
        {
          "name": "@docusaurus/theme-mermaid",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^3.10.1"
        },
        {
          "name": "@mdx-js/react",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^3.0.0"
        },
        {
          "name": "clsx",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^2.0.0"
        },
        {
          "name": "prism-react-renderer",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^2.3.0"
        },
        {
          "name": "react",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^18.0.0"
        },
        {
          "name": "react-dom",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^18.0.0"
        }
      ],
      "all_dependencies": {
        "error": null,
        "source": "github-sbom",
        "packages": [
          {
            "name": "@docusaurus/core",
            "direct": true,
            "version": "^3.10.1",
            "ecosystem": "npm"
          },
          {
            "name": "@docusaurus/plugin-google-gtag",
            "direct": true,
            "version": "^3.10.1",
            "ecosystem": "npm"
          },
          {
            "name": "@docusaurus/preset-classic",
            "direct": true,
            "version": "^3.10.1",
            "ecosystem": "npm"
          },
          {
            "name": "@docusaurus/theme-mermaid",
            "direct": true,
            "version": "^3.10.1",
            "ecosystem": "npm"
          },
          {
            "name": "@mdx-js/react",
            "direct": true,
            "version": "^3.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "clsx",
            "direct": true,
            "version": "^2.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "prism-react-renderer",
            "direct": true,
            "version": "^2.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "react",
            "direct": true,
            "version": "^18.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "react-dom",
            "direct": true,
            "version": "^18.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "@docusaurus/module-type-aliases",
            "direct": false,
            "version": "^3.10.1",
            "ecosystem": "npm"
          },
          {
            "name": "@docusaurus/types",
            "direct": false,
            "version": "^3.10.1",
            "ecosystem": "npm"
          },
          {
            "name": "argparse",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "click",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "cython",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "dill",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "intervaltree",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "jsonschema",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "matplotlib",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "multiprocessing-logging",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "natsort",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "nose",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "numpy",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "openpyxl",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pandas",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "plotly",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "psutil",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pybedtools",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pympler",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pysam",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "requests",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "scipy",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "seaborn",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "setuptools",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "statsmodels",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "tqdm",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "urllib3",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "wheel",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "xlsxwriter",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          }
        ],
        "collected": true,
        "truncated": false,
        "total_count": 38,
        "direct_count": 9,
        "indirect_count": 29
      }
    },
    "maintainership": {
      "issues": {
        "open_prs": 32,
        "merged_prs": 560,
        "open_issues": 99,
        "closed_ratio": 0.637,
        "closed_issues": 174,
        "closed_unmerged_prs": 81
      },
      "bus_factor": 3,
      "bot_contributors": 0,
      "top_contributors": [
        {
          "type": "User",
          "login": "VJalili",
          "commits": 170,
          "avatar_url": "https://avatars.githubusercontent.com/u/9027482?v=4"
        },
        {
          "type": "User",
          "login": "epiercehoffman",
          "commits": 133,
          "avatar_url": "https://avatars.githubusercontent.com/u/13224570?v=4"
        },
        {
          "type": "User",
          "login": "gatk-sv-bot",
          "commits": 109,
          "avatar_url": "https://avatars.githubusercontent.com/u/101641599?v=4"
        },
        {
          "type": "User",
          "login": "mwalker174",
          "commits": 107,
          "avatar_url": "https://avatars.githubusercontent.com/u/5686877?v=4"
        },
        {
          "type": "User",
          "login": "kjaisingh",
          "commits": 36,
          "avatar_url": "https://avatars.githubusercontent.com/u/31686667?v=4"
        },
        {
          "type": "User",
          "login": "cwhelan",
          "commits": 33,
          "avatar_url": "https://avatars.githubusercontent.com/u/709477?v=4"
        },
        {
          "type": "User",
          "login": "TedBrookings",
          "commits": 18,
          "avatar_url": "https://avatars.githubusercontent.com/u/6463752?v=4"
        },
        {
          "type": "User",
          "login": "kirtanav98",
          "commits": 13,
          "avatar_url": "https://avatars.githubusercontent.com/u/123595850?v=4"
        },
        {
          "type": "User",
          "login": "tedsharpe",
          "commits": 10,
          "avatar_url": "https://avatars.githubusercontent.com/u/9284156?v=4"
        },
        {
          "type": "User",
          "login": "RCollins13",
          "commits": 10,
          "avatar_url": "https://avatars.githubusercontent.com/u/7913924?v=4"
        }
      ],
      "contributors_sampled": 20,
      "top_contributor_share": 0.254
    },
    "quality_signals": {
      "has_ci": true,
      "has_tests": true,
      "ci_workflows": [
        "docs.yml",
        "pytest.yaml",
        "readonly_check.yaml",
        "sv_pipeline_docker.yml",
        "testwdls.yaml"
      ],
      "has_docs_dir": false,
      "linter_configs": [
        "tox.ini"
      ],
      "has_editorconfig": false,
      "has_linter_config": true,
      "has_precommit_config": false
    },
    "security_signals": {
      "lockfiles": [],
      "scorecard": {
        "checks": [
          {
            "name": "Binary-Artifacts",
            "score": 9,
            "reason": "binaries present in source code",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
          },
          {
            "name": "Branch-Protection",
            "score": null,
            "reason": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
          },
          {
            "name": "CI-Tests",
            "score": 10,
            "reason": "25 out of 25 merged PRs checked by a CI test -- score normalized to 10",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
          },
          {
            "name": "CII-Best-Practices",
            "score": 0,
            "reason": "no effort to earn an OpenSSF best practices badge detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
          },
          {
            "name": "Code-Review",
            "score": 8,
            "reason": "Found 25/30 approved changesets -- score normalized to 8",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
          },
          {
            "name": "Contributors",
            "score": 10,
            "reason": "project has 8 contributing companies or organizations",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
          },
          {
            "name": "Dangerous-Workflow",
            "score": 10,
            "reason": "no dangerous workflow patterns detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
          },
          {
            "name": "Dependency-Update-Tool",
            "score": 0,
            "reason": "no update tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
          },
          {
            "name": "Fuzzing",
            "score": 0,
            "reason": "project is not fuzzed",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
          },
          {
            "name": "License",
            "score": 10,
            "reason": "license file detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
          },
          {
            "name": "Maintained",
            "score": 10,
            "reason": "13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
          },
          {
            "name": "Packaging",
            "score": null,
            "reason": "packaging workflow not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
          },
          {
            "name": "Pinned-Dependencies",
            "score": 0,
            "reason": "dependency not pinned by hash detected -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
          },
          {
            "name": "SAST",
            "score": 5,
            "reason": "SAST tool is not run on all commits -- score normalized to 5",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
          },
          {
            "name": "Security-Policy",
            "score": 0,
            "reason": "security policy file not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
          },
          {
            "name": "Signed-Releases",
            "score": null,
            "reason": "no releases found",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
          },
          {
            "name": "Token-Permissions",
            "score": 0,
            "reason": "detected GitHub workflow tokens with excessive permissions",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
          },
          {
            "name": "Vulnerabilities",
            "score": 10,
            "reason": "0 existing vulnerabilities detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
          }
        ],
        "commit": "0ccbe08ec7f90cdc8ff5bc81749ec7245c48bf8b",
        "ran_at": "2026-07-31T20:24:47Z",
        "aggregate_score": 5.6,
        "scorecard_version": "v5.5.0"
      },
      "has_codeql_workflow": false,
      "has_security_policy": false,
      "has_dependabot_config": false
    },
    "contribution_flow": {
      "collected": true,
      "ci_last_run_at": "2026-07-30T17:05:46Z",
      "oldest_open_prs": [
        {
          "number": 364,
          "created_at": "2022-06-29T16:00:17Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 416,
          "created_at": "2022-09-23T00:34:32Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 435,
          "created_at": "2022-10-05T16:37:34Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 446,
          "created_at": "2022-10-12T15:35:51Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 496,
          "created_at": "2023-02-11T13:20:02Z",
          "last_comment_at": "2023-02-16T19:26:20Z",
          "last_comment_author": "VJalili"
        },
        {
          "number": 533,
          "created_at": "2023-05-11T20:30:50Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 617,
          "created_at": "2023-11-09T20:13:22Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 633,
          "created_at": "2024-01-31T15:26:13Z",
          "last_comment_at": "2024-04-29T15:16:41Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 644,
          "created_at": "2024-02-12T21:07:27Z",
          "last_comment_at": "2024-02-14T16:52:32Z",
          "last_comment_author": "VJalili"
        },
        {
          "number": 653,
          "created_at": "2024-03-08T18:54:28Z",
          "last_comment_at": "2024-04-29T16:46:02Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 654,
          "created_at": "2024-03-11T18:16:53Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 662,
          "created_at": "2024-04-02T17:12:00Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 668,
          "created_at": "2024-04-25T19:55:57Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 675,
          "created_at": "2024-05-13T16:43:25Z",
          "last_comment_at": "2024-09-11T16:55:41Z",
          "last_comment_author": "VJalili"
        },
        {
          "number": 765,
          "created_at": "2025-01-06T19:03:21Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 804,
          "created_at": "2025-04-25T20:23:39Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 806,
          "created_at": "2025-05-01T16:15:37Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 810,
          "created_at": "2025-05-09T17:22:34Z",
          "last_comment_at": "2025-05-27T15:41:11Z",
          "last_comment_author": "epiercehoffman"
        },
        {
          "number": 816,
          "created_at": "2025-05-27T15:36:16Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 821,
          "created_at": "2025-06-09T05:52:24Z",
          "last_comment_at": "2025-06-10T20:31:52Z",
          "last_comment_author": "epiercehoffman"
        }
      ],
      "last_merged_pr_at": "2026-07-30T17:05:08Z",
      "ci_last_conclusion": "SUCCESS",
      "oldest_open_issues": [
        {
          "number": 16,
          "created_at": "2020-07-01T16:44:42Z",
          "last_comment_at": "2022-05-13T17:52:35Z",
          "last_comment_author": "ekarlins"
        },
        {
          "number": 49,
          "created_at": "2020-09-10T14:24:14Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 52,
          "created_at": "2020-09-10T15:58:09Z",
          "last_comment_at": "2021-11-16T21:45:14Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 81,
          "created_at": "2020-11-16T17:53:18Z",
          "last_comment_at": "2021-11-16T21:21:00Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 103,
          "created_at": "2021-01-28T18:43:25Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 161,
          "created_at": "2021-05-06T13:34:24Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 166,
          "created_at": "2021-05-12T19:06:36Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 181,
          "created_at": "2021-06-10T15:45:41Z",
          "last_comment_at": "2021-11-16T21:27:01Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 201,
          "created_at": "2021-07-20T23:51:32Z",
          "last_comment_at": "2025-07-26T19:06:34Z",
          "last_comment_author": "kjaisingh"
        },
        {
          "number": 223,
          "created_at": "2021-09-03T16:15:41Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 234,
          "created_at": "2021-09-17T18:02:51Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 265,
          "created_at": "2021-11-22T15:56:36Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 269,
          "created_at": "2021-12-01T17:34:49Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 277,
          "created_at": "2022-01-04T21:05:39Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 310,
          "created_at": "2022-03-14T16:35:53Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 327,
          "created_at": "2022-04-01T14:59:28Z",
          "last_comment_at": "2024-06-12T16:40:32Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 336,
          "created_at": "2022-04-25T16:41:35Z",
          "last_comment_at": "2022-08-26T14:53:58Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 355,
          "created_at": "2022-06-10T13:21:15Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 360,
          "created_at": "2022-06-21T16:03:29Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 363,
          "created_at": "2022-06-29T15:03:35Z",
          "last_comment_at": "2023-04-27T15:45:14Z",
          "last_comment_author": "alsanju"
        }
      ]
    }
  },
  "config": {
    "disabled_metrics": [],
    "disabled_categories": [],
    "disabled_components": {}
  },
  "source": {
    "url": "https://github.com/broadinstitute/gatk-sv",
    "host": "github.com",
    "name": "gatk-sv",
    "owner": "broadinstitute"
  },
  "metrics": {
    "overall": {
      "key": "overall",
      "band": "excellent",
      "name": "Overall health",
      "note": "The weighted overall 74 is calibrated to 88 on the published index scale (record calibration 2026-08-02).",
      "notes": [
        {
          "code": "overall_calibration",
          "params": {
            "raw": 74,
            "calibrated": 88,
            "calibration": "2026-08-02"
          }
        }
      ],
      "value": 88,
      "inputs": {
        "security": 65,
        "vitality": 86,
        "community": 71,
        "governance": 76,
        "calibration": "2026-08-02",
        "engineering": 76,
        "ai_readiness": 42,
        "weighted_overall_raw": 74
      },
      "components": []
    },
    "categories": [
      {
        "key": "vitality",
        "band": "excellent",
        "name": "Vitality",
        "value": 86,
        "weight": 0.21,
        "metrics": [
          {
            "key": "development_activity",
            "band": "excellent",
            "name": "Development activity",
            "note": null,
            "notes": [],
            "value": 82,
            "inputs": {
              "commits_last_year": 94,
              "human_commit_share": 1,
              "days_since_last_push": 0,
              "active_weeks_last_year": 26
            },
            "components": [
              {
                "key": "push_recency",
                "name": "Push recency",
                "detail": "last push 0 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "push_recency",
                    "params": {
                      "days": 0
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_cadence",
                "name": "Commit cadence",
                "detail": "26/52 weeks with commits",
                "points": 18,
                "status": "partial",
                "details": [
                  {
                    "code": "commit_cadence_weeks",
                    "params": {
                      "weeks": 26
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_volume",
                "name": "Commit volume",
                "detail": "94 commits in the last year",
                "points": 17.8,
                "status": "partial",
                "details": [
                  {
                    "code": "commits_last_year",
                    "params": {
                      "count": 94
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "openssf_scorecard_maintained",
                "name": "OpenSSF Scorecard: Maintained",
                "detail": "13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "release_discipline",
            "band": "excellent",
            "name": "Release discipline",
            "note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "openssf_scorecard_signed_releases"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 92,
            "inputs": {
              "releases_count": 79,
              "latest_release_tag": "v1.1.1",
              "releases_from_tags": false,
              "days_since_latest_release": 17,
              "mean_days_between_releases": 77
            },
            "components": [
              {
                "key": "ships_releases",
                "name": "Ships releases",
                "detail": "79 releases published",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "releases_published",
                    "params": {
                      "count": 79
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "release_recency",
                "name": "Release recency",
                "detail": "latest release 17 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "release_recency",
                    "params": {
                      "days": 17
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "release_cadence",
                "name": "Release cadence",
                "detail": "a release every ~77 days",
                "points": 19.8,
                "status": "partial",
                "details": [
                  {
                    "code": "release_cadence",
                    "params": {
                      "gap": 77
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "openssf_scorecard_signed_releases",
                "name": "OpenSSF Scorecard: Signed-Releases",
                "detail": "no releases found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 10
              }
            ]
          },
          {
            "key": "abandonment",
            "band": "exceptional",
            "name": "Abandonment",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "cap": null,
              "state": "maintained",
              "guards": [],
              "signals": [],
              "red_flag": false,
              "multiplier_pct": 100,
              "declared_reason": null,
              "unverified_reason": null,
              "unanswered_open_prs": null,
              "unanswered_open_issues": null,
              "days_since_last_merged_pr": null,
              "days_since_last_human_commit": 3,
              "days_since_last_human_commit_is_floor": false
            },
            "components": [
              {
                "key": "project_is_still_maintained",
                "name": "Project is still maintained",
                "detail": "last human commit 3 days ago",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "abandonment_maintained",
                    "params": {
                      "days": 3
                    }
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Is the project alive — is code being written and are releases shipping?"
      },
      {
        "key": "community",
        "band": "good",
        "name": "Community & Adoption",
        "value": 71,
        "weight": 0.17,
        "metrics": [
          {
            "key": "popularity",
            "band": "moderate",
            "name": "Popularity & adoption",
            "note": null,
            "notes": [],
            "value": 59,
            "inputs": {
              "forks": 81,
              "stars": 206,
              "watchers": 11,
              "growth_state": "unverified",
              "growth_factor_pct": 100,
              "growth_unverified_reason": "no_history"
            },
            "components": [
              {
                "key": "stars",
                "name": "Stars",
                "detail": "206 stars",
                "points": 37.5,
                "status": "partial",
                "details": [
                  {
                    "code": "stars",
                    "params": {
                      "count": 206
                    }
                  }
                ],
                "max_points": 60
              },
              {
                "key": "forks",
                "name": "Forks",
                "detail": "81 forks",
                "points": 15.9,
                "status": "partial",
                "details": [
                  {
                    "code": "forks",
                    "params": {
                      "count": 81
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "watchers",
                "name": "Watchers",
                "detail": "11 watchers",
                "points": 5.6,
                "status": "partial",
                "details": [
                  {
                    "code": "watchers",
                    "params": {
                      "count": 11
                    }
                  }
                ],
                "max_points": 15
              }
            ]
          },
          {
            "key": "community_health",
            "band": "excellent",
            "name": "Community health",
            "note": null,
            "notes": [],
            "value": 85,
            "inputs": {
              "has_readme": true,
              "has_license": true,
              "readme_badges": null,
              "has_contributing": true,
              "has_issue_template": false,
              "has_code_of_conduct": true,
              "readme_badge_services": [],
              "has_pull_request_template": false
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 22.5,
                "status": "met",
                "details": [],
                "max_points": 22.5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "recognized license (BSD-3-Clause)",
                "points": 22.5,
                "status": "met",
                "details": [
                  {
                    "code": "license_standard",
                    "params": {}
                  },
                  {
                    "code": "license_spdx",
                    "params": {
                      "spdx": "BSD-3-Clause"
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributing_guide",
                "name": "CONTRIBUTING guide",
                "detail": null,
                "points": 18,
                "status": "met",
                "details": [],
                "max_points": 18
              },
              {
                "key": "code_of_conduct",
                "name": "Code of conduct",
                "detail": null,
                "points": 13.5,
                "status": "met",
                "details": [],
                "max_points": 13.5
              },
              {
                "key": "issue_template",
                "name": "Issue template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.2
              },
              {
                "key": "pr_template",
                "name": "PR template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.3
              }
            ]
          }
        ],
        "description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
      },
      {
        "key": "governance",
        "band": "good",
        "name": "Sustainability & Governance",
        "value": 76,
        "weight": 0.23,
        "metrics": [
          {
            "key": "maintainer_resilience",
            "band": "good",
            "name": "Maintainer resilience (bus factor)",
            "note": null,
            "notes": [],
            "value": 76,
            "inputs": {
              "bus_factor": 3,
              "contributors_sampled": 20,
              "top_contributor_share": 0.254
            },
            "components": [
              {
                "key": "bus_factor",
                "name": "Bus factor",
                "detail": "3 contributor(s) cover half of all commits",
                "points": 36,
                "status": "partial",
                "details": [
                  {
                    "code": "bus_factor",
                    "params": {
                      "count": 3
                    }
                  }
                ],
                "max_points": 54
              },
              {
                "key": "commit_distribution",
                "name": "Commit distribution",
                "detail": "top contributor authored 25% of commits",
                "points": 16.8,
                "status": "partial",
                "details": [
                  {
                    "code": "top_contributor_share",
                    "params": {
                      "share": 25
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributor_breadth",
                "name": "Contributor breadth",
                "detail": "20 contributors",
                "points": 13.5,
                "status": "met",
                "details": [
                  {
                    "code": "contributors_sampled",
                    "params": {
                      "count": 20
                    }
                  }
                ],
                "max_points": 13.5
              },
              {
                "key": "openssf_scorecard_contributors",
                "name": "OpenSSF Scorecard: Contributors",
                "detail": "project has 8 contributing companies or organizations",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "responsiveness",
            "band": "good",
            "name": "Issue & PR responsiveness",
            "note": "Excluded from scoring (no data or not applicable): Newcomer PR acceptance. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "newcomer_pr_acceptance"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 75,
            "inputs": {
              "merged_prs": 560,
              "open_issues": 99,
              "closed_issues": 174,
              "prs_merged_7d": null,
              "prs_decided_7d": null,
              "prs_merged_30d": null,
              "prs_decided_30d": null,
              "issue_closed_ratio": 0.637,
              "closed_unmerged_prs": 81,
              "first_time_authors_30d": null,
              "first_time_prs_merged_30d": null,
              "first_time_prs_decided_30d": null
            },
            "components": [
              {
                "key": "issue_resolution",
                "name": "Issue resolution",
                "detail": "64% of issues closed",
                "points": 26.8,
                "status": "partial",
                "details": [
                  {
                    "code": "issues_closed_share",
                    "params": {
                      "share": 64
                    }
                  }
                ],
                "max_points": 42
              },
              {
                "key": "pr_acceptance",
                "name": "PR acceptance",
                "detail": "560/641 decided PRs merged",
                "points": 26.2,
                "status": "partial",
                "details": [
                  {
                    "code": "decided_prs_merged",
                    "params": {
                      "merged": 560,
                      "decided": 641
                    }
                  }
                ],
                "max_points": 30
              },
              {
                "key": "newcomer_pr_acceptance",
                "name": "Newcomer PR acceptance",
                "detail": "no first-time contributor's PR decided in 30d",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_newcomer_prs",
                    "params": {
                      "days": 30
                    }
                  }
                ],
                "max_points": 13
              },
              {
                "key": "openssf_scorecard_code_review",
                "name": "OpenSSF Scorecard: Code-Review",
                "detail": "Found 25/30 approved changesets -- score normalized to 8",
                "points": 12,
                "status": "partial",
                "details": [],
                "max_points": 15
              }
            ]
          },
          {
            "key": "stewardship",
            "band": "good",
            "name": "Ownership & stewardship",
            "note": null,
            "notes": [],
            "value": 77,
            "inputs": {
              "followers": 1290,
              "owner_type": "Organization",
              "is_verified": null,
              "owner_login": "broadinstitute",
              "public_repos": 1515,
              "account_age_days": 5804
            },
            "components": [
              {
                "key": "ownership_backing",
                "name": "Ownership backing",
                "detail": "organization-owned",
                "points": 30,
                "status": "met",
                "details": [
                  {
                    "code": "owner_organization",
                    "params": {}
                  }
                ],
                "max_points": 30
              },
              {
                "key": "verified_domain",
                "name": "Verified domain",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "owner_reach",
                "name": "Owner reach",
                "detail": "1,290 followers of broadinstitute",
                "points": 22.4,
                "status": "partial",
                "details": [
                  {
                    "code": "owner_followers",
                    "params": {
                      "count": 1290,
                      "login": "broadinstitute"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "track_record",
                "name": "Track record",
                "detail": "1515 public repos, account ~15 yr old",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "public_repos",
                    "params": {
                      "count": 1515
                    }
                  },
                  {
                    "code": "account_age_years",
                    "params": {
                      "years": 15
                    }
                  }
                ],
                "max_points": 25
              }
            ]
          }
        ],
        "description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
      },
      {
        "key": "engineering",
        "band": "good",
        "name": "Engineering Quality",
        "value": 76,
        "weight": 0.19,
        "metrics": [
          {
            "key": "engineering_practices",
            "band": "excellent",
            "name": "Engineering practices",
            "note": null,
            "notes": [],
            "value": 84,
            "inputs": {
              "has_ci": true,
              "has_tests": true,
              "has_editorconfig": false,
              "has_linter_config": true,
              "has_precommit_config": false
            },
            "components": [
              {
                "key": "ci_workflows",
                "name": "CI workflows",
                "detail": "5 workflow(s)",
                "points": 24,
                "status": "met",
                "details": [
                  {
                    "code": "ci_workflows",
                    "params": {
                      "count": 5
                    }
                  }
                ],
                "max_points": 24
              },
              {
                "key": "tests_present",
                "name": "Tests present",
                "detail": null,
                "points": 24,
                "status": "met",
                "details": [],
                "max_points": 24
              },
              {
                "key": "linter_config",
                "name": "Linter config",
                "detail": "tox.ini",
                "points": 16,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "tox.ini"
                    }
                  }
                ],
                "max_points": 16
              },
              {
                "key": "pre_commit_hooks",
                "name": "Pre-commit hooks",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 9.6
              },
              {
                "key": "editorconfig",
                "name": ".editorconfig",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.4
              },
              {
                "key": "openssf_scorecard_ci_tests",
                "name": "OpenSSF Scorecard: CI-Tests",
                "detail": "25 out of 25 merged PRs checked by a CI test -- score normalized to 10",
                "points": 20,
                "status": "met",
                "details": [],
                "max_points": 20
              }
            ]
          },
          {
            "key": "documentation",
            "band": "good",
            "name": "Documentation",
            "note": null,
            "notes": [],
            "value": 65,
            "inputs": {
              "topics": [
                "genomics",
                "structural-variants",
                "structural-variation",
                "bioinformatics"
              ],
              "has_wiki": false,
              "homepage": "https://broadinstitute.github.io/gatk-sv/",
              "has_readme": true,
              "has_docs_dir": false,
              "has_description": true
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 30,
                "status": "met",
                "details": [],
                "max_points": 30
              },
              {
                "key": "documentation_directory",
                "name": "Documentation directory",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 25
              },
              {
                "key": "documentation_homepage_site",
                "name": "Documentation / homepage site",
                "detail": "https://broadinstitute.github.io/gatk-sv/",
                "points": 15,
                "status": "met",
                "details": [],
                "max_points": 15
              },
              {
                "key": "repository_description",
                "name": "Repository description",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "topics",
                "name": "Topics",
                "detail": "4 topics",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "topics_count",
                    "params": {
                      "count": 4
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "wiki",
                "name": "Wiki",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
      },
      {
        "key": "security",
        "band": "good",
        "name": "Security",
        "value": 65,
        "weight": 0.16,
        "metrics": [
          {
            "key": "security_posture",
            "band": "moderate",
            "name": "Security posture",
            "note": "Excluded from scoring (no data or not applicable): Branch-Protection, Packaging, Signed-Releases. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "branch_protection",
                    "packaging",
                    "signed_releases"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 56,
            "inputs": {
              "source": "openssf_scorecard",
              "checks_evaluated": 15,
              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 3,
              "scorecard_aggregate": 5.6
            },
            "components": [
              {
                "key": "binary_artifacts",
                "name": "Binary-Artifacts",
                "detail": "binaries present in source code",
                "points": 6.8,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "ci_tests",
                "name": "CI-Tests",
                "detail": "25 out of 25 merged PRs checked by a CI test -- score normalized to 10",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "code_review",
                "name": "Code-Review",
                "detail": "Found 25/30 approved changesets -- score normalized to 8",
                "points": 6,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 8 contributing companies or organizations",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no dangerous workflow patterns detected",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "no update tool detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow not detected",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
                "detail": "SAST tool is not run on all commits -- score normalized to 5",
                "points": 2.5,
                "status": "partial",
                "details": [],
                "max_points": 5
              },
              {
                "key": "security_policy",
                "name": "Security-Policy",
                "detail": "security policy file not detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "signed_releases",
                "name": "Signed-Releases",
                "detail": "no releases found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "detected GitHub workflow tokens with excessive permissions",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "0 existing vulnerabilities detected",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              }
            ]
          },
          {
            "key": "dependency_advisories",
            "band": "exceptional",
            "name": "Dependency advisories",
            "note": "Excluded from scoring (no data or not applicable): No advisories left outstanding. Remaining weights renormalized. Matched the pypi:svtk@0.2.0 runtime dependency closure — what installing the published package pulls in — 12 packages. Reachability is not analyzed.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "no_advisories_left_outstanding"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              },
              {
                "code": "advisories_scope_published",
                "params": {
                  "package": "pypi:svtk@0.2.0",
                  "assessed": 12
                }
              },
              {
                "code": "advisories_reachability",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "source": "osv",
              "advisories": 0,
              "affected_packages": 0,
              "assessed_packages": 12,
              "unassessed_packages": 0,
              "affected_by_severity": "none",
              "direct_affected_packages": 0
            },
            "components": [
              {
                "key": "direct_dependencies_free_of_known_advisories",
                "name": "Direct dependencies free of known advisories",
                "detail": "no direct dependency carries a known advisory",
                "points": 35,
                "status": "met",
                "details": [
                  {
                    "code": "no_direct_advisories",
                    "params": {}
                  }
                ],
                "max_points": 35
              },
              {
                "key": "indirect_dependencies_free_of_known_advisories",
                "name": "Indirect dependencies free of known advisories",
                "detail": "no indirect dependency carries a known advisory",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "no_indirect_advisories",
                    "params": {}
                  }
                ],
                "max_points": 25
              },
              {
                "key": "no_advisories_left_outstanding",
                "name": "No advisories left outstanding",
                "detail": "no advisory carries a publication date",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "advisories_no_publication_date",
                    "params": {}
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "malicious_dependencies",
            "band": "exceptional",
            "name": "Malicious dependencies",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "source": "osv",
              "meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
              "packages": [],
              "red_flag": false,
              "assessed_packages": 12,
              "malicious_packages": 0,
              "direct_malicious_packages": 0,
              "withdrawn_malicious_packages": 0,
              "installable_malicious_packages": 0
            },
            "components": [
              {
                "key": "no_dependency_reported_as_a_malicious_package",
                "name": "No dependency reported as a malicious package",
                "detail": "no dependency is reported as a malicious package",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "no_malicious_dependencies",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          },
          {
            "key": "high_risk_jurisdiction_exposure",
            "band": "exceptional",
            "name": "High-Risk Jurisdiction Exposure",
            "note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
            "notes": [
              {
                "code": "jurisdiction_evidence_limits",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "meaning": "self-published location evidence; not nationality or citizenship",
              "red_flag": false,
              "exposures": [],
              "policy_countries": [
                "Russia",
                "Iran",
                "North Korea"
              ],
              "commit_weight_rule": {
                "min_commits": 50,
                "min_commit_share": 0.1
              },
              "review_only_matches": 0,
              "below_threshold_exposures": [],
              "assessed_self_published_locations": 6
            },
            "components": [
              {
                "key": "policy_exposure_multiplier",
                "name": "Policy exposure multiplier",
                "detail": "no confirmed policy-scope location match",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "jurisdiction_no_match",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "weak",
        "name": "AI Readiness",
        "value": 42,
        "weight": 0.04,
        "metrics": [
          {
            "key": "ai_agent_context",
            "band": "weak",
            "name": "Agent context & guidance",
            "note": null,
            "notes": [],
            "value": 37,
            "inputs": {
              "has_llms_txt": false,
              "legible_history_share": 0.7,
              "agent_instruction_files": [],
              "agent_instruction_max_bytes": null
            },
            "components": [
              {
                "key": "agent_instructions",
                "name": "Agent instructions",
                "detail": "no CLAUDE.md / AGENTS.md / editor rules",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_instructions",
                    "params": {}
                  }
                ],
                "max_points": 45
              },
              {
                "key": "machine_readable_docs_llms_txt",
                "name": "Machine-readable docs (llms.txt)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "legible_commit_history",
                "name": "Legible commit history",
                "detail": "70 of 100 human commits state their intent (structured subject or explanatory body)",
                "points": 37.3,
                "status": "partial",
                "details": [
                  {
                    "code": "legible_history",
                    "params": {
                      "legible": 70,
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "ai_verify_loop",
            "band": "weak",
            "name": "Verify loop (build / test / typecheck)",
            "note": null,
            "notes": [],
            "value": 43,
            "inputs": {
              "has_nix": false,
              "has_tests": true,
              "lockfiles": [],
              "has_dockerfile": true,
              "typed_language": false,
              "bootstrap_files": [],
              "has_devcontainer": false,
              "has_linter_config": true,
              "typecheck_configs": [],
              "agent_commit_share": 0,
              "toolchain_manifests": [],
              "dependency_bot_commit_share": 0
            },
            "components": [
              {
                "key": "one_command_bootstrap",
                "name": "One-command bootstrap",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 18
              },
              {
                "key": "automated_tests",
                "name": "Automated tests",
                "detail": null,
                "points": 22,
                "status": "met",
                "details": [],
                "max_points": 22
              },
              {
                "key": "lint_format_config",
                "name": "Lint / format config",
                "detail": "tox.ini",
                "points": 11,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "tox.ini"
                    }
                  }
                ],
                "max_points": 11
              },
              {
                "key": "static_type_checking",
                "name": "Static type checking",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
              },
              {
                "key": "reproducible_environment",
                "name": "Reproducible environment",
                "detail": "Dockerfile",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "Dockerfile"
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "demonstrated_agent_practice",
                "name": "Demonstrated agent practice",
                "detail": "no agent-authored commits among the last 100",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_authored_commits",
                    "params": {
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "automated_maintenance",
                "name": "Automated maintenance",
                "detail": "no automated dependency updates observed",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_dependency_automation",
                    "params": {}
                  }
                ],
                "max_points": 8
              },
              {
                "key": "openssf_scorecard_pinned_dependencies",
                "name": "OpenSSF Scorecard: Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "ai_code_legibility",
            "band": "moderate",
            "name": "Code legibility for models",
            "note": null,
            "notes": [],
            "value": 54,
            "inputs": {
              "primary_language": "Python",
              "largest_source_bytes": 120131,
              "source_files_sampled": 255,
              "oversized_source_files": 3
            },
            "components": [
              {
                "key": "type_checkable_code",
                "name": "Type-checkable code",
                "detail": "Python without a type-check config",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_typecheck_config_language",
                    "params": {
                      "language": "Python"
                    }
                  }
                ],
                "max_points": 45
              },
              {
                "key": "manageable_file_sizes",
                "name": "Manageable file sizes",
                "detail": "3/255 source files over 60KB",
                "points": 54.4,
                "status": "partial",
                "details": [
                  {
                    "code": "oversized_source_files",
                    "params": {
                      "kb": 60,
                      "sampled": 255,
                      "oversized": 3
                    }
                  }
                ],
                "max_points": 55
              }
            ]
          },
          {
            "key": "ai_interfaces",
            "band": "weak",
            "name": "Machine-readable interfaces",
            "note": null,
            "notes": [],
            "value": 40,
            "inputs": {
              "example_dirs": [
                "notebooks"
              ],
              "has_mcp_signal": false,
              "api_schema_files": []
            },
            "components": [
              {
                "key": "api_schema_openapi_graphql_proto",
                "name": "API schema (OpenAPI/GraphQL/proto)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 40
              },
              {
                "key": "mcp_server",
                "name": "MCP server",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "runnable_examples",
                "name": "Runnable examples",
                "detail": "notebooks",
                "points": 40,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "notebooks"
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          }
        ],
        "description": "How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight: agent tooling is a real maintenance signal, but its absence must never gate the top of the scale (calibration saturates at raw 91, so 100/100 remains reachable with AI Readiness at zero)."
      }
    ],
    "classification": {
      "labels": [
        "web-ui"
      ],
      "scores": {
        "web-ui": 4
      },
      "primary": "web-ui",
      "evidence": [
        {
          "tier": "dependencies",
          "label": "web-ui",
          "source": "dep:react-dom",
          "weight": 4
        }
      ],
      "artifacts": [],
      "confidence": "low",
      "host_extension": false,
      "runs_as_process": true,
      "consumed_by_code": false
    },
    "metrics_version": "2.3.1"
  },
  "warnings": [
    "Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token",
    "Could not fetch pypi package 'svqc' from its registry",
    "pypi package 'svtk' points at a different repository (https://github.com/simleek/displayarray); excluded from ecosystem scoring",
    "Could not fetch pypi package 'svtest' from its registry",
    "pypi package 'sv_utils' points at a different repository (https://github.com/friend1ws/sv_utils); excluded from ecosystem scoring"
  ],
  "report_type": "repository",
  "generated_at": "2026-07-31T20:25:13.675172Z",
  "schema_version": "0.27.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/b/broadinstitute/gatk-sv.svg",
  "full_name": "broadinstitute/gatk-sv",
  "license_state": "standard",
  "license_spdx": "BSD-3-Clause"
}

Bewertungen sind Signale, keine Garantien. Sie spiegeln öffentlich sichtbare Praxis auf GitHub wider — kein Code-Audit und keine Sicherheitsgarantie.

Fehlende Daten werden ausgeschlossen und die Gewichte neu normiert, nie als null bewertet. Die Methodik ist versioniert und offen: Metriken v2.3.1, Schema v0.27.0 — vollständige Methodik · Metriken-Wiki.

Wie ein einzelnes Ergebnis im Gesamtregister steht: aggregierte StatistikenPyPI.