Registro público
Informe de salud del softwareesquema 0.27.0 · métricas 2.3.1 · 2026-07-31 20:25 UTC

broadinstitute / gatk-sv

A structural variation pipeline for short-read sequencing

Python · WDL · RBSD-3-Clause★ 206 estrellas⑂ 81 forksdesde jun 2020Ver en GitHub ↗
TipoInterfaz webcómo se determina

broadinstitute/gatk-sv tiene un índice de salud de 88 sobre 100, lo que lo sitúa en la banda Excelente. Su puntuación más alta es Vitality (86/100) y la más baja, AI Readiness (42/100). Se actualizó por última vez hoy. 3 personas concentran la mayor parte del trabajo reciente.

88
global / 100
Excelente

Índice de salud del software

Las métricas se agrupan en categorías ponderadas sobre una escala estandarizada de 1 a 100. El resultado global parte de su media ponderada, calibrada contra la distribución del registro público para que las bandas tengan significado percentil; cuando la evidencia pública activa la Política de Jurisdicciones de Alto Riesgo, la calificación se ajusta y recibe un límite «En riesgo» de 34.

88
Excepcional93-100El nivel más alto del registro (≈ el 5% superior); cumple prácticamente todos los criterios evaluados
Excelente80-92Sólido en todos los frentes; carencias menores
Bueno65-79Saludable; carencias limitadas y manejables
Moderado50-64Aceptable con carencias notables; se recomienda revisión
Débil35-49Debilidades sustanciales en varias áreas
En riesgo20-34Debilidades significativas; su adopción exige cautela
Crítico1-19Problemas graves (proyecto abandonado, un solo mantenedor, sin higiene)
VitalidadComunidad yAdopciónSostenibilidady GobernanzaCalidad deIngenieríaSeguridadPreparaciónpara IA

Perfil de puntuación

Cada eje es una categoría. La forma importa más que la media: un proyecto sano llena toda la figura, mientras que un perfil de picos y cráteres indica que la fortaleza en una dimensión enmascara el riesgo en otra.

El resultado global ponderado 74 se calibra a 88 en la escala publicada del índice (calibración del registro 2026-08-02).

Titularidad

Broad InstituteOrganización
1290 seguidores1515 repositorios públicosdesde sept 2010

Este repositorio está respaldado por una organización: una custodia compartida y responsable que puede sobrevivir a cualquier mantenedor individual.

Ecosistemas de paquetes

RegistroPaqueteVersiónDescargas / mesVersionesÚltima publicación
PyPIsvtkapunta a otro repositorio; no se puntúa0.2.0-2hace 1437 días
PyPIsv_utilsapunta a otro repositorio; no se puntúa0.6.1-5hace 2424 días

Métricas por categoría

Vitalidad

¿Está vivo el proyecto: se escribe código y se publican versiones?

86Excelente · 21% del índice global
Cómo se puntúa
36/36Recencia de push — último push hace 0 días
18/36Cadencia de commits — 26/52 semanas con commits
17.8/18Volumen de commits — 94 commits en el último año
10/10OpenSSF Scorecard: Maintained — 13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
Datos de entrada utilizados
commits_last_year94
human_commit_share1
days_since_last_push0
active_weeks_last_year26
Cómo se puntúa
27/27Publica versiones — 79 versiones publicadas
36/36Recencia de las versiones — última versión hace 17 días
19.8/27Cadencia de publicación — una versión cada ~77 días
0/10OpenSSF Scorecard: Signed-Releases — sin datos
Datos de entrada utilizados
releases_count79
latest_release_tagv1.1.1
releases_from_tagsno
days_since_latest_release17
mean_days_between_releases77
Excluidos de la puntuación (sin datos o no aplicable): OpenSSF Scorecard: Signed-Releases. Los pesos restantes se han renormalizado.

Comunidad y Adopción

¿Tiene el proyecto usuarios, descargas, atención y unas condiciones acogedoras para quienes contribuyen?

71Bueno · 17% del índice global
Cómo se puntúa
37.5/60Estrellas — 206 estrellas
15.9/25Forks — 81 forks
5.6/15Observadores — 11 observadores
Datos de entrada utilizados
forks81
stars206
watchers11
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history
Cómo se puntúa
22.5/22.5README
22.5/22.5Licencia — licencia reconocida (BSD-3-Clause)
18/18Guía CONTRIBUTING
13.5/13.5Código de conducta
0/7.2Plantilla de issues
0/6.3Plantilla de PR
Datos de entrada utilizados
has_readme
has_license
readme_badges
has_contributing
has_issue_templateno
has_code_of_conduct
readme_badge_services
has_pull_request_templateno

Sostenibilidad y Gobernanza

¿Sobrevivirá el proyecto a sus personas: factor bus, capacidad de respuesta, quién lo respalda y mantenimiento del paquete?

76Bueno · 23% del índice global
Cómo se puntúa
36/54Factor bus — la mitad de los commits recae en 3 contribuyente(s)
16.8/22.5Distribución de commits — el principal contribuyente firma el 25% de los commits
13.5/13.5Amplitud de contribuyentes — 20 contribuyentes
10/10OpenSSF Scorecard: Contributors — project has 8 contributing companies or organizations
Datos de entrada utilizados
bus_factor3
contributors_sampled20
top_contributor_share0,254
Cómo se puntúa
26.8/42Resolución de issues — 64% de issues cerradas
26.2/30Aceptación de PR — 560/641 PR decididos fusionados
0/13Newcomer PR acceptance — ningún PR de un contribuyente primerizo decidido en 30 d
12/15OpenSSF Scorecard: Code-Review — Found 25/30 approved changesets -- score normalized to 8
Datos de entrada utilizados
merged_prs560
open_issues99
closed_issues174
prs_merged_7d
prs_decided_7d
prs_merged_30d
prs_decided_30d
issue_closed_ratio0,637
closed_unmerged_prs81
first_time_authors_30d
first_time_prs_merged_30d
first_time_prs_decided_30d
Excluidos de la puntuación (sin datos o no aplicable): newcomer_pr_acceptance. Los pesos restantes se han renormalizado.
Cómo se puntúa
30/30Respaldo de la propiedad — propiedad de una organización
0/20Dominio verificado
22.4/25Alcance del propietario — 1290 seguidores de broadinstitute
25/25Trayectoria — 1515 repos públicos, cuenta de ~15 años
Datos de entrada utilizados
followers1290
owner_typeOrganization
is_verified
owner_loginbroadinstitute
public_repos1515
account_age_days5804

Calidad de Ingeniería

¿Existen unas prácticas mínimas de ingeniería y documentación?

76Bueno · 19% del índice global
Cómo se puntúa
24/24Flujos de trabajo de CI — 5 flujo(s) de trabajo
24/24Pruebas presentes
16/16Configuración de linter — tox.ini
0/9.6Hooks de pre-commit
0/6.4.editorconfig
20/20OpenSSF Scorecard: CI-Tests — 25 out of 25 merged PRs checked by a CI test -- score normalized to 10
Datos de entrada utilizados
has_ci
has_tests
has_editorconfigno
has_linter_config
has_precommit_configno
Cómo se puntúa
30/30README
0/25Directorio de documentación
15/15Sitio de documentación / página del proyecto — https://broadinstitute.github.io/gatk-sv/
10/10Descripción del repositorio
10/10Topics — 4 topics
0/10Wiki
Datos de entrada utilizados
topicsgenomics, structural-variants, structural-variation, bioinformatics
has_wikino
homepagehttps://broadinstitute.github.io/gatk-sv/
has_readme
has_docs_dirno
has_description

Seguridad

¿Son sólidas las prácticas visibles de seguridad y de cadena de suministro, sin exposición jurisdiccional de alto riesgo sin resolver?

65Bueno · 16% del índice global
Cómo se puntúa
6.8/7.5Binary-Artifacts — binaries present in source code
0/7.5Branch-Protection — sin datos
2.5/2.5CI-Tests — 25 out of 25 merged PRs checked by a CI test -- score normalized to 10
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
6/7.5Code-Review — Found 25/30 approved changesets -- score normalized to 8
2.5/2.5Contributors — project has 8 contributing companies or organizations
10/10Dangerous-Workflow — no dangerous workflow patterns detected
0/7.5Dependency-Update-Tool — no update tool detected
0/5Fuzzing — project is not fuzzed
2.5/2.5Licencia — license file detected
7.5/7.5Maintained — 13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
0/5Packaging — sin datos
0/5Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
2.5/5SAST — SAST tool is not run on all commits -- score normalized to 5
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — sin datos
0/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
7.5/7.5Vulnerabilities — 0 existing vulnerabilities detected
Datos de entrada utilizados
sourceopenssf_scorecard
checks_evaluated15
scorecard_versionv5.5.0
checks_inconclusive3
scorecard_aggregate5,6
Excluidos de la puntuación (sin datos o no aplicable): branch_protection, packaging, signed_releases. Los pesos restantes se han renormalizado.
Cómo se puntúa
35/35Dependencias directas libres de avisos conocidos — ninguna dependencia directa tiene un aviso conocido
25/25Dependencias indirectas libres de avisos conocidos — ninguna dependencia indirecta tiene un aviso conocido
0/40Sin avisos pendientes — ningún aviso tiene fecha de publicación
Datos de entrada utilizados
sourceosv
advisories0
affected_packages0
assessed_packages12
unassessed_packages0
affected_by_severitynone
direct_affected_packages0
Excluidos de la puntuación (sin datos o no aplicable): Sin avisos pendientes. Los pesos restantes se han renormalizado. Se cotejó el cierre de dependencias en tiempo de ejecución de pypi:svtk@0.2.0 —lo que arrastra la instalación del paquete publicado—: 12 paquetes. No se analiza la alcanzabilidad.

Preparación para IA

¿Hasta qué punto está el repositorio preparado para desarrollarse y mantenerse con agentes de codificación de IA? Tiene un peso deliberadamente pequeño (4%): las herramientas para agentes son una señal real de mantenimiento, pero un repositorio sin ninguna puede alcanzar igualmente 100/100.

42Débil · 4% del índice global
Cómo se puntúa
0/45Instrucciones para agentes — sin CLAUDE.md / AGENTS.md / reglas de editor
0/15Documentación legible por máquinas (llms.txt)
37.3/40Historial de commits legible — 70 de 100 commits humanos declaran su intención (asunto estructurado o cuerpo explicativo)
Datos de entrada utilizados
has_llms_txtno
legible_history_share0,7
agent_instruction_files
agent_instruction_max_bytes
Cómo se puntúa
0/18Arranque con un solo comando
22/22Pruebas automatizadas
11/11Configuración de lint / formato — tox.ini
0/11Verificación estática de tipos
10/10Entorno reproducible — Dockerfile
0/10Práctica demostrada con agentes — ningún commit con autoría de agente entre los últimos 100
0/8Mantenimiento automatizado — no se observan actualizaciones automáticas de dependencias
0/10OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
Datos de entrada utilizados
has_nixno
has_tests
lockfiles
has_dockerfile
typed_languageno
bootstrap_files
has_devcontainerno
has_linter_config
typecheck_configs
agent_commit_share0
toolchain_manifests
dependency_bot_commit_share0
Cómo se puntúa
0/45Código verificable por tipos — Python sin configuración de verificación de tipos
54.4/55Tamaños de archivo manejables — 3/255 archivos fuente de más de 60 KB
Datos de entrada utilizados
primary_languagePython
largest_source_bytes120.131
source_files_sampled255
oversized_source_files3
Cómo se puntúa
0/40Esquema de API (OpenAPI/GraphQL/proto)
0/20Servidor MCP
40/40Ejemplos ejecutables — notebooks
Datos de entrada utilizados
example_dirsnotebooks
has_mcp_signalno
api_schema_files

Datos clave

206estrellas de GitHub
20contribuidores
94commits en los últimos 12 meses
0días desde el último push
79versiones publicadas
3factor bus
99issues abiertas
npmecosistemas de paquetes

Advertencias de recopilación de datos

  • Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
  • Could not fetch pypi package 'svqc' from its registry
  • pypi package 'svtk' points at a different repository (https://github.com/simleek/displayarray); excluded from ecosystem scoring
  • Could not fetch pypi package 'svtest' from its registry
  • pypi package 'sv_utils' points at a different repository (https://github.com/friend1ws/sv_utils); excluded from ecosystem scoring

Más detalle

Historial de estrellas y forks 0 ★ / 81 ⇿
0Estrellas
81Forks
76Versiones

Cuándo se añadió cada estrella y fork, recopilado de GitHub y agrupado por día. El crecimiento acumulado se sitúa justo encima de las adiciones diarias que lo componen, de modo que ambos se leen en conjunto: la acumulación orgánica sostenida no se parece en nada a un pico abrupto y efímero. Cuando esa diferencia es medible, se informa como autenticidad del crecimiento.

0204060808032020-072023-072026-07
Mayor 0Menor 0Parche 5

Cada punto abarca 6 días.

OpenSSF Scorecard 5.6 / 10
5.6agregado

Evaluación de seguridad independiente y agnóstica en cuanto a herramientas, procedente del proyecto de código abierto OpenSSF Scorecard. Cada comprobación premia una práctica de seguridad, no la herramienta de un proveedor concreto. Las comprobaciones que Scorecard no pudo determinar se marcan como n/d y se excluyen de la puntuación de seguridad (nunca se cuentan como cero).Scorecard v5.5.0 · 2026-07-31 20:24 UTC

9Binary-Artifactsbinaries present in source code
n/dBranch-Protectioninternal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md
10CI-Tests25 out of 25 merged PRs checked by a CI test -- score normalized to 10
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
8Code-ReviewFound 25/30 approved changesets -- score normalized to 8
10Contributorsproject has 8 contributing companies or organizations
10Dangerous-Workflowno dangerous workflow patterns detected
0Dependency-Update-Toolno update tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
10Maintained13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
n/dPackagingpackaging workflow not detected
0Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 0
5SASTSAST tool is not run on all commits -- score normalized to 5
0Security-Policysecurity policy file not detected
n/dSigned-Releasesno releases found
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
10Vulnerabilities0 existing vulnerabilities detected
Dependencias directas 9
RegistroPaqueteRestricción de versiónManifiesto
npm@docusaurus/core^3.10.1website/package.json
npm@docusaurus/plugin-google-gtag^3.10.1website/package.json
npm@docusaurus/preset-classic^3.10.1website/package.json
npm@docusaurus/theme-mermaid^3.10.1website/package.json
npm@mdx-js/react^3.0.0website/package.json
npmclsx^2.0.0website/package.json
npmprism-react-renderer^2.3.0website/package.json
npmreact^18.0.0website/package.json
npmreact-dom^18.0.0website/package.json
Todas las dependencias 38

Conjunto completo de dependencias resueltas según el grafo de dependencias de GitHub: 9 paquetes directos y 29 indirectos (transitivos). El cierre transitivo es completo cuando el repositorio incluye un lockfile.

RegistroPaqueteVersiónRelación
npm@docusaurus/core^3.10.1directa
npm@docusaurus/plugin-google-gtag^3.10.1directa
npm@docusaurus/preset-classic^3.10.1directa
npm@docusaurus/theme-mermaid^3.10.1directa
npm@mdx-js/react^3.0.0directa
npmclsx^2.0.0directa
npmprism-react-renderer^2.3.0directa
npmreact^18.0.0directa
npmreact-dom^18.0.0directa
npm@docusaurus/module-type-aliases^3.10.1indirecta
npm@docusaurus/types^3.10.1indirecta
PyPIargparseindirecta
PyPIclickindirecta
PyPIcythonindirecta
PyPIdillindirecta
PyPIintervaltreeindirecta
PyPIjsonschemaindirecta
PyPImatplotlibindirecta
PyPImultiprocessing-loggingindirecta
PyPInatsortindirecta
PyPInoseindirecta
PyPInumpyindirecta
PyPIopenpyxlindirecta
PyPIpandasindirecta
PyPIplotlyindirecta
PyPIpsutilindirecta
PyPIpybedtoolsindirecta
PyPIpymplerindirecta
PyPIpysamindirecta
PyPIrequestsindirecta
PyPIscipyindirecta
PyPIseabornindirecta
PyPIsetuptoolsindirecta
PyPIstatsmodelsindirecta
PyPItqdmindirecta
PyPIurllib3indirecta
PyPIwheelindirecta
PyPIxlsxwriterindirecta
Avisos de dependencias 0

Instalar pypi:svtk@0.2.0 arrastra 12 paquetes, directos y transitivos: 0 tienen avisos conocidos, de los cuales 0 son dependencias directas.

Ningún aviso conocido afecta a las dependencias evaluadas.

Un aviso significa que la versión registrada en el grafo de dependencias cae dentro del rango afectado de un aviso. No se analiza la alcanzabilidad, y el grafo incluye fijaciones de desarrollo y prueba: un hallazgo puede referirse al utillaje y no al software distribuido.

Informe JSON sin procesar legible por máquina
{
  "data": {
    "repo": {
      "topics": [
        "genomics",
        "structural-variants",
        "structural-variation",
        "bioinformatics"
      ],
      "is_fork": false,
      "size_kb": 163376,
      "has_wiki": false,
      "homepage": "https://broadinstitute.github.io/gatk-sv/",
      "languages": {
        "R": 716788,
        "CSS": 4550,
        "WDL": 1282298,
        "Java": 65062,
        "Shell": 632788,
        "Cython": 1238,
        "Python": 1881457,
        "Dockerfile": 60441,
        "JavaScript": 14252,
        "Go Template": 229656,
        "Jupyter Notebook": 199591
      },
      "pushed_at": "2026-07-31T19:28:45Z",
      "created_at": "2020-06-18T20:52:07Z",
      "owner_type": "Organization",
      "updated_at": "2026-07-30T17:08:27Z",
      "description": "A structural variation pipeline for short-read sequencing",
      "is_archived": false,
      "is_disabled": false,
      "license_spdx": "BSD-3-Clause",
      "default_branch": "main",
      "license_spdx_raw": "BSD-3-Clause",
      "primary_language": "Python",
      "significant_languages": [
        "Python",
        "WDL",
        "R",
        "Shell"
      ]
    },
    "owner": {
      "blog": "http://www.broadinstitute.org/",
      "name": "Broad Institute",
      "type": "Organization",
      "login": "broadinstitute",
      "company": null,
      "location": "Cambridge, MA",
      "followers": 1290,
      "avatar_url": "https://avatars.githubusercontent.com/u/393552?v=4",
      "created_at": "2010-09-09T16:37:46Z",
      "is_verified": null,
      "public_repos": 1515,
      "account_age_days": 5804
    },
    "license": {
      "state": "standard",
      "spdx_id": "BSD-3-Clause",
      "raw_spdx": "BSD-3-Clause",
      "file_present": true,
      "scorecard_found": true,
      "profile_has_license": true
    },
    "activity": {
      "releases": [
        {
          "tag": "v1.1.1",
          "kind": "patch",
          "published_at": "2026-07-13T21:54:04Z"
        },
        {
          "tag": "v1.1",
          "kind": "other",
          "published_at": "2025-09-04T15:52:32Z"
        },
        {
          "tag": "v1.0.5",
          "kind": "patch",
          "published_at": "2025-07-01T16:22:51Z"
        },
        {
          "tag": "v1.0.4",
          "kind": "patch",
          "published_at": "2025-05-22T17:40:39Z"
        },
        {
          "tag": "v1.0.3",
          "kind": "patch",
          "published_at": "2025-04-14T19:55:56Z"
        },
        {
          "tag": "v1.0.2-hotfix",
          "kind": "prerelease",
          "published_at": "2025-02-10T17:26:57Z"
        },
        {
          "tag": "v1.0.2",
          "kind": "patch",
          "published_at": "2025-02-06T16:40:19Z"
        },
        {
          "tag": "v1.0.1",
          "kind": "patch",
          "published_at": "2024-11-21T20:45:06Z"
        },
        {
          "tag": "v1.0",
          "kind": "other",
          "published_at": "2024-10-31T15:59:49Z"
        },
        {
          "tag": "v0.29-beta",
          "kind": "other",
          "published_at": "2024-08-19T16:57:14Z"
        },
        {
          "tag": "v0.28.5-beta",
          "kind": "prerelease",
          "published_at": "2024-05-02T19:31:09Z"
        },
        {
          "tag": "v0.28.4-beta",
          "kind": "prerelease",
          "published_at": "2023-10-23T19:28:00Z"
        },
        {
          "tag": "v0.28.3-beta",
          "kind": "prerelease",
          "published_at": "2023-08-21T19:15:38Z"
        },
        {
          "tag": "v0.28.2-beta",
          "kind": "prerelease",
          "published_at": "2023-08-08T17:50:53Z"
        },
        {
          "tag": "v0.28.1-beta",
          "kind": "prerelease",
          "published_at": "2023-06-28T17:03:53Z"
        },
        {
          "tag": "v0.28-beta",
          "kind": "other",
          "published_at": "2023-06-27T16:20:27Z"
        },
        {
          "tag": "v0.27.3-beta",
          "kind": "prerelease",
          "published_at": "2023-05-08T18:29:50Z"
        },
        {
          "tag": "v0.27.2-beta",
          "kind": "prerelease",
          "published_at": "2023-05-01T18:25:12Z"
        },
        {
          "tag": "v0.27.1-beta",
          "kind": "prerelease",
          "published_at": "2023-03-16T17:06:29Z"
        },
        {
          "tag": "v0.27-beta",
          "kind": "other",
          "published_at": "2023-03-15T17:38:48Z"
        },
        {
          "tag": "v0.26.10-beta",
          "kind": "prerelease",
          "published_at": "2023-03-02T02:53:33Z"
        },
        {
          "tag": "v0.26.9-beta",
          "kind": "prerelease",
          "published_at": "2023-02-02T20:33:54Z"
        },
        {
          "tag": "v0.26.8-beta",
          "kind": "prerelease",
          "published_at": "2023-01-05T16:00:58Z"
        },
        {
          "tag": "v0.26.7-beta",
          "kind": "prerelease",
          "published_at": "2022-12-19T15:55:09Z"
        },
        {
          "tag": "v0.26.6-beta",
          "kind": "prerelease",
          "published_at": "2022-12-15T17:44:15Z"
        },
        {
          "tag": "v0.26.5-beta",
          "kind": "prerelease",
          "published_at": "2022-11-30T20:30:33Z"
        },
        {
          "tag": "v0.26.4-beta",
          "kind": "prerelease",
          "published_at": "2022-10-12T15:45:53Z"
        },
        {
          "tag": "v0.26.3-beta",
          "kind": "prerelease",
          "published_at": "2022-09-27T23:09:01Z"
        },
        {
          "tag": "v0.26.2-beta",
          "kind": "prerelease",
          "published_at": "2022-09-22T16:59:17Z"
        },
        {
          "tag": "v0.26.1-beta",
          "kind": "prerelease",
          "published_at": "2022-09-19T17:07:22Z"
        },
        {
          "tag": "v0.26-beta",
          "kind": "other",
          "published_at": "2022-09-16T14:40:01Z"
        },
        {
          "tag": "v0.25.1-beta",
          "kind": "prerelease",
          "published_at": "2022-09-08T16:11:41Z"
        },
        {
          "tag": "v0.25-beta",
          "kind": "other",
          "published_at": "2022-08-26T19:07:00Z"
        },
        {
          "tag": "v0.24.3-beta",
          "kind": "prerelease",
          "published_at": "2022-08-22T19:41:11Z"
        },
        {
          "tag": "v0.24.2-beta",
          "kind": "prerelease",
          "published_at": "2022-08-18T18:48:26Z"
        },
        {
          "tag": "v0.24.1-beta",
          "kind": "prerelease",
          "published_at": "2022-08-10T16:50:05Z"
        },
        {
          "tag": "v0.24-beta",
          "kind": "other",
          "published_at": "2022-07-28T15:49:27Z"
        },
        {
          "tag": "v0.23-beta",
          "kind": "other",
          "published_at": "2022-05-04T19:30:12Z"
        },
        {
          "tag": "v0.22-beta",
          "kind": "other",
          "published_at": "2022-04-29T20:37:23Z"
        },
        {
          "tag": "v0.9.1-beta-hotfix2",
          "kind": "prerelease",
          "published_at": "2022-04-14T18:48:44Z"
        },
        {
          "tag": "v0.21-beta",
          "kind": "other",
          "published_at": "2022-04-13T18:38:42Z"
        },
        {
          "tag": "v0.20.2-beta",
          "kind": "prerelease",
          "published_at": "2022-02-11T16:49:38Z"
        },
        {
          "tag": "v0.20.1-beta",
          "kind": "prerelease",
          "published_at": "2022-02-03T19:40:21Z"
        },
        {
          "tag": "v0.20-beta",
          "kind": "other",
          "published_at": "2022-02-03T19:38:09Z"
        },
        {
          "tag": "v0.19.4-beta",
          "kind": "prerelease",
          "published_at": "2022-01-14T18:04:18Z"
        },
        {
          "tag": "v0.19.3-beta",
          "kind": "prerelease",
          "published_at": "2021-12-21T20:17:01Z"
        },
        {
          "tag": "v0.19.2-beta",
          "kind": "prerelease",
          "published_at": "2021-11-29T22:28:17Z"
        },
        {
          "tag": "v0.19.1-beta",
          "kind": "prerelease",
          "published_at": "2021-11-15T23:02:01Z"
        },
        {
          "tag": "v0.19-beta",
          "kind": "other",
          "published_at": "2021-11-15T22:15:32Z"
        },
        {
          "tag": "v0.18.5-beta",
          "kind": "prerelease",
          "published_at": "2021-10-29T17:00:51Z"
        },
        {
          "tag": "v0.18.4-beta",
          "kind": "prerelease",
          "published_at": "2021-10-19T22:57:18Z"
        },
        {
          "tag": "v0.18.3-beta",
          "kind": "prerelease",
          "published_at": "2021-10-18T21:01:00Z"
        },
        {
          "tag": "v0.18.2-beta",
          "kind": "prerelease",
          "published_at": "2021-09-28T15:35:05Z"
        },
        {
          "tag": "v0.18.1-beta",
          "kind": "prerelease",
          "published_at": "2021-09-17T16:33:25Z"
        },
        {
          "tag": "v0.18-beta",
          "kind": "other",
          "published_at": "2021-09-14T20:52:14Z"
        },
        {
          "tag": "v0.17.4-beta",
          "kind": "prerelease",
          "published_at": "2021-09-03T22:08:59Z"
        },
        {
          "tag": "v0.17.3-beta",
          "kind": "prerelease",
          "published_at": "2021-09-03T18:48:02Z"
        },
        {
          "tag": "v0.17.2-beta",
          "kind": "prerelease",
          "published_at": "2021-08-30T19:21:44Z"
        },
        {
          "tag": "v0.17.1-beta",
          "kind": "prerelease",
          "published_at": "2021-08-16T20:28:27Z"
        },
        {
          "tag": "v0.17-beta",
          "kind": "other",
          "published_at": "2021-08-16T19:34:23Z"
        },
        {
          "tag": "v0.16-beta",
          "kind": "other",
          "published_at": "2021-07-27T05:53:10Z"
        },
        {
          "tag": "v0.15.1-beta",
          "kind": "prerelease",
          "published_at": "2021-06-28T14:31:19Z"
        },
        {
          "tag": "v0.15-beta-hotfix",
          "kind": "other",
          "published_at": "2021-06-15T21:42:06Z"
        },
        {
          "tag": "v0.15-beta",
          "kind": "other",
          "published_at": "2021-06-15T18:42:49Z"
        },
        {
          "tag": "v0.14.3-beta",
          "kind": "prerelease",
          "published_at": "2021-05-18T16:36:48Z"
        },
        {
          "tag": "v0.14.2-beta",
          "kind": "prerelease",
          "published_at": "2021-05-14T16:58:52Z"
        },
        {
          "tag": "v0.14.1-beta",
          "kind": "prerelease",
          "published_at": "2021-05-07T20:03:17Z"
        },
        {
          "tag": "v0.14-beta",
          "kind": "other",
          "published_at": "2021-04-20T17:19:14Z"
        },
        {
          "tag": "v0.13.1-beta",
          "kind": "prerelease",
          "published_at": "2021-03-18T21:06:41Z"
        },
        {
          "tag": "v0.13-beta",
          "kind": "other",
          "published_at": "2021-03-02T21:48:10Z"
        },
        {
          "tag": "v0.12-beta",
          "kind": "other",
          "published_at": "2021-02-02T19:40:26Z"
        },
        {
          "tag": "v0.11-beta",
          "kind": "other",
          "published_at": "2020-11-20T21:07:04Z"
        },
        {
          "tag": "v0.9.1-beta-hotfix",
          "kind": "prerelease",
          "published_at": "2020-10-16T15:52:53Z"
        },
        {
          "tag": "v0.10-beta",
          "kind": "other",
          "published_at": "2020-10-16T13:08:43Z"
        },
        {
          "tag": "v0.9.1-beta",
          "kind": "prerelease",
          "published_at": "2020-10-07T19:07:05Z"
        },
        {
          "tag": "v0.9-beta",
          "kind": "other",
          "published_at": "2020-09-14T19:40:00Z"
        },
        {
          "tag": "v0.8.3-beta",
          "kind": "prerelease",
          "published_at": "2020-07-10T15:42:42Z"
        },
        {
          "tag": "v0.8.2-beta",
          "kind": "prerelease",
          "published_at": "2020-07-01T19:03:54Z"
        },
        {
          "tag": "v0.8.1-beta",
          "kind": "prerelease",
          "published_at": "2020-06-30T15:02:32Z"
        }
      ],
      "recent_commits": [
        {
          "oid": "0ccbe08ec7f90cdc8ff5bc81749ec7245c48bf8b",
          "body": null,
          "is_bot": false,
          "headline": "Add SV-Shell docs. (#951)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-07-30T17:05:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c67283d4039f23d496901fe7de0cd027e1102a9b",
          "body": null,
          "is_bot": false,
          "headline": "update license with current year (#944)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2026-07-07T17:40:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "84573c4fe99565e63fefa603c4b5715ea6ce26ca",
          "body": null,
          "is_bot": false,
          "headline": "Add DRAGEN SVs to SV-Shell  (#939)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-06-10T19:52:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0fa5f602339ffe12dadf0495ebdd2700df1fa819",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 24f0fd08",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2026-06-02T16:49:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "24f0fd08a57521c1412cc631fb1fb41903cb46a6",
          "body": null,
          "is_bot": false,
          "headline": "Add STRipy to joint calling (#938)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2026-06-02T16:40:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b61d309109b1b8ce428019db64a9c7443e04064c",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 0639be96",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2026-05-30T13:56:22Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0639be96051665eb059e12a3ad7729396a70a548",
          "body": null,
          "is_bot": false,
          "headline": "Fix stale docker builds (#940)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2026-05-30T11:23:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "51e1cd231ebcbfaebbf8d35e0ae040fee8f555a4",
          "body": null,
          "is_bot": false,
          "headline": "Update python version in pytest action (#929)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-05-19T15:04:30Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2d44e3775026fd608f0d9628f34a468d1b7dbb88",
          "body": null,
          "is_bot": false,
          "headline": "Update Docusarus version & dependencies (#941)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-05-18T22:18:15Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a992b6e5832dafa9cbc723b1196bc5f367a19b38",
          "body": "… (#859)",
          "is_bot": false,
          "headline": "Remove outdated code and documentation related to evidence assessment…",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2026-05-15T19:08:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b44a111f0a1e5b09e08a14e297546ea93bcddc06",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 3be4e152",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2026-05-15T18:20:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "74cb7f14da2e32eebb0bb4130990cf2affd4271b",
          "body": null,
          "is_bot": false,
          "headline": "SV-Shell WDL  (#933)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-05-14T15:31:23Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3be4e15227b1bb450db9038189808382cfebe250",
          "body": null,
          "is_bot": false,
          "headline": "Fix Stripy VCF sample ID (#937)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2026-05-13T22:22:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7eb2af1feea9f81a390caff211f6832c6e7f7ac5",
          "body": null,
          "is_bot": false,
          "headline": "input template updates to accommodate scoregenotypes (#930)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2026-04-01T18:38:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "767780624ac0f97224b959f45b42ebcf53b95ece",
          "body": null,
          "is_bot": false,
          "headline": "Ensure logging to both stdout & stderr in sv-shell (#932)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-03-27T14:59:06Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a12d65c43ea8c2463aa02daa95f340eb01901fe6",
          "body": null,
          "is_bot": false,
          "headline": "Remove working directories after task completion  (#926)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-03-11T18:51:16Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "64798a758fa5d17266c99cdb95c55dadeb973bb6",
          "body": null,
          "is_bot": false,
          "headline": "Run cnmops on chromosome arms separately  (#925)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-03-11T16:14:42Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "689eb83ed1e2877cd152be613c2e7b5cb280f2f3",
          "body": null,
          "is_bot": false,
          "headline": "Update sv-shell docker. (#923)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-27T17:02:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "256a1c70682a1715a0175a9b47558113c0c8da18",
          "body": null,
          "is_bot": false,
          "headline": "Add a GitHub action to enforce readonly files (#922)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-25T15:12:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5c020b4d9cba01ccc12f9d6acfbe17eea4798aae",
          "body": null,
          "is_bot": false,
          "headline": "Add single-sample pipeline to sv-shell (#887)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-19T20:39:16Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a0cec9288c4992d6a1785f988520709cf4ab5052",
          "body": "…es (#921)",
          "is_bot": false,
          "headline": "Sync sv-shell implementation of `MakeCohortVcf` with recent WDL updat…",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-11T17:04:43Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0c82b2820229069e7aa05c9d6e44bf09e8756b3e",
          "body": null,
          "is_bot": false,
          "headline": "Implement the `GenotypeSVs` task in sv-shell (#920)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-11T17:04:14Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4e0d854c8c527cb5ec8041034c5258ebb136c663",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 797b7604",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2026-02-06T23:27:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "797b760468d9dba80610c51aeaa9b71506363ab6",
          "body": null,
          "is_bot": false,
          "headline": "Migrate genotyping to GATK (#917)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2026-02-06T23:19:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b9b982261ca473a840295173db8851779d9c79c3",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 629c81be",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2026-02-06T21:12:40Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "629c81be2e015be687868e8f8651a0815041c905",
          "body": null,
          "is_bot": false,
          "headline": "Implements the `MakeCohortVcf` workflow in sv-shell (#907)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-06T20:56:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2008dd47bff454152e56148f0f0a58eea683aba0",
          "body": null,
          "is_bot": false,
          "headline": "Update sv_pipeline_docker.yml (#916)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-04T19:20:40Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "82a75e4333e4dc5007ae7c81587ea05f09812d56",
          "body": null,
          "is_bot": false,
          "headline": "Delete inputs/values/dockers_azure.json (#914)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-03T23:50:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "10d2d8113616fcb691081d2c61dd22cb1e260586",
          "body": null,
          "is_bot": false,
          "headline": "Migrate CleanVcf into GATK (#912)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2026-02-03T21:44:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3c3e7e622d045502c4eec412061f88ebda4011c8",
          "body": null,
          "is_bot": false,
          "headline": "fix file path for binned CN plots in accordance with #858 (#905)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2026-01-29T22:00:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a1be457d487a8720c13dfad68edcf5d802a77b5a",
          "body": null,
          "is_bot": false,
          "headline": "Replace root with an env variable in sv-shell scripts (#911)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-01-29T18:20:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f793bf81f56d5979f9933eb2d9df556b11a5d5a4",
          "body": "…904)\n\n* Hardcode `noAddress: true` in GatherSampleEvidence & in the workflows it calls.\n\n* Enable noAddress in remaining gse tasks.\n\n* Enable noAddress in exec path of TrainGCNV\n\n* Enable noAddress in exec path of genotype batch\n\n* Revert \"Enable noAddress in exec path of genotype batch\"\n\nThis reverts commit dbdc91fb68c300984f55bda7356b782345baeff5.\n\n* Enable noAddress in exec path of the gather batch evidence workflow.\n\n* test\n\n* undo test\n\n* add noaddress to gcnv case\n\n* test\n\n* undo test",
          "is_bot": false,
          "headline": "Disable using external IP address in workflows with wide scatters  (#…",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-01-29T18:17:50Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "41507c7932e0325abfd28780a531cf0e6c4b7671",
          "body": "Co-authored-by: VJalili <VJalili@users.noreply.github.com>",
          "is_bot": false,
          "headline": "Scaling updates for GatherSampleEvidence (#906)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2026-01-28T21:41:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f601620151930d2bcad3c278add440c52ebf32ec",
          "body": null,
          "is_bot": false,
          "headline": "Add stripy to sv-shell (#909)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-01-28T16:24:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b042fba2bb5a01c586f8ae05f57aaa2963101594",
          "body": null,
          "is_bot": false,
          "headline": "Add the sv-shell equivalent of the single-sample-metrics workflow (#908)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-01-22T18:15:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3e01e2445643665e0a8f41d58967dcca1cae64a3",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 5b84101e",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-12-18T20:58:39Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5b84101e9c6ad21ec03dade149e83dcb07de4e96",
          "body": null,
          "is_bot": false,
          "headline": "Implement the refine complex variants workflow in sv-shell (#900)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-12-18T20:22:27Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9d805bcc528194927745fb81333e73c6bad287d9",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by a06f272a",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-12-18T19:38:38Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a06f272aea282608d2e5337856f029175e9fb67b",
          "body": null,
          "is_bot": false,
          "headline": "Trivial change to trigger docker build (#902)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-12-18T19:19:57Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cc7e9115a61786e525cb4751f3e5a6f942e672c1",
          "body": null,
          "is_bot": false,
          "headline": "Revert dockstore and docker configs (#901)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-12-18T17:54:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2d5d8a44802548a184d7e57bcc967d2e611e8349",
          "body": null,
          "is_bot": false,
          "headline": "New GenerateBatchMetrics workflow (#894)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-12-18T16:23:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e6d0be7f2576a9a0c8f5220baa391d8aeea41a2d",
          "body": null,
          "is_bot": false,
          "headline": "Implement genotype complex variants module for sv-shell  (#899)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-12-18T16:21:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "74e180c736ad625609499238ad97b5e49f75ea04",
          "body": null,
          "is_bot": false,
          "headline": "Add the Resolve Complex Variants workflow to SV-Shell (#897)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-12-11T18:02:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b167c03d96cf4538c1ba9bbcee0f23c66968114e",
          "body": null,
          "is_bot": false,
          "headline": "Implement gCNV case mode in sv-shell (#895)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-12-10T17:32:25Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ddba7112c75a0980ca3c88f803710fd03dd78981",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 76795a82",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-11-19T20:39:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "76795a826422293c30bbc265ddbc202802d19777",
          "body": null,
          "is_bot": false,
          "headline": "Implement the ScoreGenotypes workflow in sv-shell",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-19T20:14:46Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "dc8d35ab5833a75b6f0589ffd4baa106ebd463ac",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by fbe6e8b2",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-11-18T17:33:57Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "fbe6e8b2b3e4d429e2147737ee9bea85b54c8b8a",
          "body": "* draft gatk installation in sv-shell docker.\n\n* Enable sv-shell in build_docker.py",
          "is_bot": false,
          "headline": "Update and enable sv-shell Docker image in Docker automation  (#892)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-18T17:08:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "eab3f4de84c1ba7e3a0171bb518895d1137e6898",
          "body": "* Implement the filter genotypes module in sv-shell.\n\n* syntax bug fix.",
          "is_bot": false,
          "headline": "Implement the `FilterGenotypes` module in sv-shell (#891)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-17T19:00:29Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f4bd1f47e228f52354dbc09471130f213313900f",
          "body": "* Fix mermaid diagram & all link to SL description.\n\n* simplify linking to sl description.",
          "is_bot": false,
          "headline": "Fix mermaid diagram & all link to SL description. (#890)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-17T16:02:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b6b7a5d090b063daa07b13fb7fa0c6db69e48ba5",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 99ad3600",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-11-15T19:07:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "99ad3600f8f2b33bca04b5ea28cd93eea666b760",
          "body": null,
          "is_bot": false,
          "headline": "Implement the SV Annotate module in sv-shell  (#886)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-15T18:57:23Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "798fa19b8abd777557983b1ded984586c73290be",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 7b56c3ac",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-11-14T21:32:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7b56c3ac8f67dfab0291545af10679795781d872",
          "body": null,
          "is_bot": false,
          "headline": "Add STRipy to single-sample workflow (#889)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-11-14T21:19:22Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ad280f6e54f224a82cc8ab7e2a1410ecf95e82a5",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 3ce0ddd4",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-11-14T19:55:53Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3ce0ddd4367f4c26d6d33c0f668739b443922109",
          "body": null,
          "is_bot": false,
          "headline": "Modify genotype filtering to ingest cutoffs from a table  (#864)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-11-14T19:22:08Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8d48278c7b8ab01a7e6d7f6464dd87595860832d",
          "body": null,
          "is_bot": false,
          "headline": "Implement sv concordance tool in sv-shell (#885)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-14T17:01:51Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ecdda8a71f2eefbf6f6d683853675f39696a6e30",
          "body": null,
          "is_bot": false,
          "headline": "Add the JoinRawCalls workflow to sv-shell (#884)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-14T17:00:57Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cb89c92a386f9b657ccaac052d33c02ace7a965d",
          "body": "… (#878)\n\n* Make all wd & output dirs created at the root.\n\n* Make all wd & output dirs created at the root.\n\n* Update gather sample evidence interface.\n\n* Make script paths abs.\n\n* Cleanup.",
          "is_bot": false,
          "headline": "Update sv-shell implementation of the Gather Sample Evidence workflow…",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-14T16:59:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ad4144ed197b2f4a7d3d75b26403a02f1482899f",
          "body": null,
          "is_bot": false,
          "headline": "Enable DRAGEN SV in single sample mode (#875)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-11-14T16:45:06Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "bd8d273b9108d461b59f22634da79dd646ccdb91",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 2a5a9471",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-11-14T16:30:10Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2a5a9471187d3e297c772331ea3460ed70751021",
          "body": null,
          "is_bot": false,
          "headline": "Annotate retrotransposon deletions with a filter tag (#862)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-11-14T16:21:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f4dc9099e1f1c269fa9e67c9d89fa513c673c3d7",
          "body": null,
          "is_bot": false,
          "headline": "Update evidence qc (#888)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-14T15:40:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ecc525989e071a29334d252714d292ce5a558fd7",
          "body": null,
          "is_bot": false,
          "headline": "Remove/update references to MELT (#857)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2025-11-05T20:09:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5a0cd76c4b0228dfde6a1f4c34d3b83335c7bbe5",
          "body": null,
          "is_bot": false,
          "headline": "Add combine batches. (#879)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-04T20:47:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e3cda0b49feae28caddde239218e89a910be9705",
          "body": "…858)",
          "is_bot": false,
          "headline": "analysis vs filtered histograms; put ploidy data in EvQc directory (#…",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2025-11-04T20:10:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "de3cd3c7a1b6bfdb8d66c73e5754f1b5fea68af9",
          "body": "* Draft cluster batch\n\n* Draft cluster PESR\n\n* read contigs.\n\n* Add SV cluster.\n\n* check in\n\n* bug fix\n\n* Add concat vcfs task.\n\n* checkin\n\n* checkin\n\n* checkin\n\n* checkin clustering\n\n* Add exclude interval by interval overlap task.\n\n* Add GatkToSvtkVcf.\n\n* Implement concat vcfs & output section in cluster depth.\n\n* draft cluster batch\n\n* Update cluster batch.",
          "is_bot": false,
          "headline": "Implement cluster batch in sv-shell  (#872)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-04T18:59:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d0d347d3934a323239ea5f4b39cbedabc46be9ce",
          "body": null,
          "is_bot": false,
          "headline": "DeWDLize modules under GatherBatchEvidence (#830)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-04T18:21:25Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f0e2da1bc5ac7848afdf3f32a1d61fce9b48c7c8",
          "body": "…877)",
          "is_bot": false,
          "headline": "add gnomad v4 benchmarking set to resources json and input configs (#…",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2025-11-04T18:12:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7ad73f9f66f5f758ff69462a75fa6d865d3d40a6",
          "body": null,
          "is_bot": false,
          "headline": "Update README.md (#871)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-10-23T18:12:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1991c2cdd81274005fabbb60fafb50097d36081c",
          "body": null,
          "is_bot": false,
          "headline": "Add Google analytics (#876)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-10-22T15:41:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ffad8f67ff75a2e071eaeb4b2f4f31f6cec1c9d7",
          "body": null,
          "is_bot": false,
          "headline": "Fix single-sample stratification config in Cromwell test json (#874)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-10-16T18:56:51Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b5d5049c1327464056e27123442e44c2948c8bda",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 483973d6",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-10-02T20:12:39Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "483973d6db3a8a9ba8fa72c5756a8ab53e7877f4",
          "body": "This PR includes code to refactor VCFs passed through GATK-SV to align it to Pysam's upgraded versions, which do not allow variants to have an END position that is less than its start position. As it stands, VCFs in GATK-SV only use the correct END format starting from the outputs of 13-ResolveCompl\n[…]\n position on the second chromosome, whereas the END field is set to pos. All downstream scripts that consume such VCFs are made to interpret BNDs with appropriate logic based on this updated END2 tag.",
          "is_bot": false,
          "headline": "Update representation of BNDs to be Pysam compatible (#835)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-10-02T19:23:53Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "5af2592e20a8fdcc7fe39d1bea4770b533fdc6b0",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 631368eb",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-09-04T15:43:39Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4fdac8f1da961efc14afee5d028f9ed9788c1fef",
          "body": null,
          "is_bot": false,
          "headline": "Handle zero-length arrays in JoinRawCalls (#865)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2025-09-04T15:15:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e2e78dfb1fb7b436fa4652346ade6e5a5fac2b70",
          "body": "* Update gatk commit.\n\n* Temp test gatk in docker.\n\n* Undo temp test gatk in docker.\n\n* Implement make_bincov_matrix.sh.\n\n* Improve & cleanup make_bincov_matrix.sh.\n\n* Add a sample input JSON for make_bincov_matrix.sh.\n\n* Write outputs to a json file.\n\n* Add an option to make_bincov_matrix to take a\n[…]\nmove blank space\n\n* Clean up & bugfix.\n\n* Clean up.\n\n* Remove inputs not currently needed.\n\n* We discussed to keep detailed logging & not include this option for simplicity.\n\n* Remove unused variable.",
          "is_bot": false,
          "headline": "Implement a bash version of the Evidence QC workflow (#855)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-09-03T19:01:13Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "77e84b755f2845026aa1dfb366454c997015a137",
          "body": null,
          "is_bot": false,
          "headline": "Undo dockstore sync of GenotypeComplexVariants",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-09-03T18:27:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "631368ebc9ce2b55bda12c5aa22fa3e8da90ab31",
          "body": "…ersed deletions (#850)\n\nThis PR is intended to enable passing in a custom breakpoint cutoff for dispersed duplication detection for complex events in GATK-SV. It sets this cutoff as 5000 by default, as opposed to 1000000 in the existing implementation.",
          "is_bot": false,
          "headline": "Enable passing a threshold to govern the window for detection of disp…",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-09-03T01:55:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "074f24b7591ba97982a60eea9a89984d163f92a4",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by f091af0b",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-09-02T19:55:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f091af0be6836446a9118f5db7cc3de9bde44fa6",
          "body": "* Bug fix median coverage\n\n* temp add branch for dockstore synch.\n\n* Remove branch from dockstore sync",
          "is_bot": false,
          "headline": "Bug fix missing sample ID in median coverage (#863)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-09-02T19:25:17Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f8939d8c280d8b17189102ea14e709735c595227",
          "body": null,
          "is_bot": false,
          "headline": "Plot SV counts for all VCFs in FilterBatchSites (#860)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2025-09-02T18:08:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6328e8628be9f1812b5074c1980e41cb709eacc9",
          "body": null,
          "is_bot": false,
          "headline": "Fix code path in EvidenceQc when run_ploidy is false (#854)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-09-02T14:13:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4063060f795e69c1660d9eec713528cd54fac95b",
          "body": "* Disable sv-shell and scramble dockers.\n\n* Set cran repo for the rBLAST package.\n\n* undo sv-shell and scramble disabling.\n\n* disable SV shell and scramble docker images.",
          "is_bot": false,
          "headline": "Disable sv-shell and scramble dockers. (#861)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-08-29T19:24:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d7a0c36ad9c57c844e41d8ddefbd0ebd7d7d57cc",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 697baf80",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-08-15T15:19:30Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2e312b085a4bbfb514ba1aad4dde02c6b1a6d5b7",
          "body": "* Add the de novo pipeline to Dockstore.\n\n* Log stdout and stderr to separate files for each task & record their ET.\n\n* Bug fix input arg assignment.\n\n* Improve logging and recording stderr.\n\n* skip scramble if manta was skipped.\n\n* Bug fix incorrect use of backticks.\n\n* Improve argset portability.\n\n* log xtrace in terminal & stdout logs file.",
          "is_bot": false,
          "headline": "Log stdout and stderr of tasks in `sv_shell` (#843)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-08-15T15:01:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "697baf809a2b7008f84f21d490b31ddf2f5017ad",
          "body": null,
          "is_bot": false,
          "headline": "Update reference genome in depth plots",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-08-15T14:41:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d6ab6e618a9c0a6666affc9e8873dfa4b444fa96",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 2cee07b8",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-08-14T16:37:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2cee07b89b53530c3c35780671ffe608eb12593c",
          "body": null,
          "is_bot": false,
          "headline": "Refactor manta-vcf arg to input-vcf to match recent refactors. (#853)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-08-14T16:05:49Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "25d8034f099c2bccea85e5c09f9331618a80e377",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by c4f44ead",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-08-11T15:10:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c4f44eadf7991dbed4a10e08cd449410dd0a10b3",
          "body": "* Initial commit\n\n* Modified dockstore sync to use correct branch name\n\n* Added dragen-sv params to cohort mode json templates\n\n* Resolved linting errors\n\n* Modified name of json param to pass womtool evaluation test\n\n* Removed dragen-cnv standardizer\n\n* Initial set of responses to PR comments\n\n* Re\n[…]\n\n* Modified argument to use -h rather than -z, which had conflict\n\n* Changed argument name for incorrect input\n\n* Updated param to -q\n\n---------\n\nCo-authored-by: Mark Walker <markw@broadinstitute.org>",
          "is_bot": false,
          "headline": "Enable DRAGEN-SV as a caller in cohort mode (#803)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-08-11T14:36:44Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "e0f0ce96342649386ca9a5b66cce2d6b1b4f3c1e",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 23d17304",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-08-04T16:21:50Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "23d17304dc6d6f01c7780e8efdc024ad67ef4ebd",
          "body": null,
          "is_bot": false,
          "headline": "Single-sample pipeline update (#842)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-08-04T15:54:08Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "93ae61349b4ee6690ff204b458c45778f30cce91",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 9e614379",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-08-01T14:50:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9e614379fe356fa4ada128bd851dc60f9231d23a",
          "body": "…nceQc outputs (#814)\n\n* Integrated CN denoising script\n\n* Added variant counts by chr/svtype to evidenceqc table\n\n* Added EvidenceQC changes to dockstore\n\n* Reorganized qc table script for logical comprehension\n\n* Resolved flake8 linting issues\n\n* Updated to remove duplicates for pivot operation\n\n*\n[…]\ns to QC notebook\n\n* Reduced image dimensions by ~25% and resolution by ~50% - should result in ~35% of original file size\n\n* Use original image size but just reduce resolution\n\n* Remove dockstore sync",
          "is_bot": false,
          "headline": "Add denoised copy number plots and stratified variant counts to Evide…",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-07-31T22:34:02Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "f1f2fccd4d26c9c6ace4a5bc47778d26ab531ad5",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 9d3e7872",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-07-30T18:24:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9d3e787223d8d58a1e8fbdfcabf446c390ccd76f",
          "body": "* Add the de novo pipeline to Dockstore.\n\n* Enable collect PE/SR by default.",
          "is_bot": false,
          "headline": "Enable collect PE/SR by default on sv-shell (#846)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-07-30T18:03:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9483326cdf09ca98cd7e8bfa6401fb6c399f83de",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by f71901e9",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-07-28T16:04:56Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f71901e983e72ef91b063186dfd7807bb1dd961c",
          "body": "* Initial commit - excluded from gCNV training\n\n* corrected syntactical errors\n\n* Created test changes to RD R script\n\n* Satisfied WDL syntax constraints\n\n* Rolled back changes to use filtered_vcfs array\n\n* Removed runtime attribute\n\n* Integrated changes to FilterBatchSites\n\n* Resolve python linting\n[…]\ndate website/docs/modules/generate_batch_metrics.md\n\nCo-authored-by: Mark Walker <markw@broadinstitute.org>\n\n* Removed dockstore sync\n\n---------\n\nCo-authored-by: Mark Walker <markw@broadinstitute.org>",
          "is_bot": false,
          "headline": "Filter outlier samples in TrainGCNV and GenerateBatchMetrics (#717)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-07-28T15:32:39Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "7ae35b417968a982f503f061f922575fdb5ec03e",
          "body": "* Initial commit\n\n* Updated WDL to reflect tool version in latest GATK docker version\n\n* Updated comment regarding clustering params\n\n* Initial commit\n\n* Updated to use more interpretable commands\n\n* Renamed param - was using mark's naming originally\n\n* Resolved syntax errors\n\n* Remove dockstore sync",
          "is_bot": false,
          "headline": "Update SVConcordance.wdl to enable stratified matching (#844)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-07-25T21:17:42Z",
          "body_truncated": false,
          "is_coding_agent": false
        }
      ],
      "releases_count": 79,
      "commits_last_year": 94,
      "latest_release_at": "2026-07-13T21:54:04Z",
      "latest_release_tag": "v1.1.1",
      "releases_from_tags": false,
      "days_since_last_push": 0,
      "active_weeks_last_year": 26,
      "days_since_latest_release": 17,
      "mean_days_between_releases": 77
    },
    "community": {
      "has_readme": true,
      "has_license": true,
      "has_description": true,
      "has_contributing": true,
      "health_percentage": 75,
      "has_issue_template": false,
      "has_code_of_conduct": true,
      "has_pull_request_template": false
    },
    "ecosystem": {
      "packages": [
        {
          "name": "svtk",
          "exists": true,
          "license": "MIT",
          "keywords": [],
          "ecosystem": "pypi",
          "matches_repo": false,
          "registry_url": "https://pypi.org/project/svtk/",
          "is_deprecated": false,
          "latest_version": "0.2.0",
          "repository_url": "https://github.com/simleek/displayarray",
          "versions_count": 2,
          "total_downloads": null,
          "dependents_count": null,
          "deprecation_note": null,
          "maintainers_count": null,
          "monthly_downloads": null,
          "first_published_at": "2019-09-09T01:39:33.450926Z",
          "latest_published_at": "2022-08-23T22:35:36.032196Z",
          "latest_version_yanked": null,
          "days_since_latest_publish": 1437
        },
        {
          "name": "sv_utils",
          "exists": true,
          "license": "GPLv3",
          "keywords": [
            "Development Status :: 4 - Beta",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
            "Operating System :: Unix",
            "Programming Language :: Python :: 2.7",
            "Programming Language :: Python :: 3.6",
            "Programming Language :: Python :: 3.7",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
          ],
          "ecosystem": "pypi",
          "matches_repo": false,
          "registry_url": "https://pypi.org/project/sv_utils/",
          "is_deprecated": false,
          "latest_version": "0.6.1",
          "repository_url": "https://github.com/friend1ws/sv_utils",
          "versions_count": 5,
          "total_downloads": null,
          "dependents_count": null,
          "deprecation_note": null,
          "maintainers_count": null,
          "monthly_downloads": null,
          "first_published_at": "2018-01-11T14:36:46.114770Z",
          "latest_published_at": "2019-12-11T05:51:44.247273Z",
          "latest_version_yanked": null,
          "days_since_latest_publish": 2424
        }
      ]
    },
    "popularity": {
      "forks": 81,
      "stars": 206,
      "watchers": 11,
      "fork_history": {
        "days": [
          {
            "date": "2020-07-03",
            "count": 1
          },
          {
            "date": "2020-07-13",
            "count": 1
          },
          {
            "date": "2020-09-07",
            "count": 1
          },
          {
            "date": "2020-09-22",
            "count": 1
          },
          {
            "date": "2020-10-08",
            "count": 1
          },
          {
            "date": "2020-11-18",
            "count": 1
          },
          {
            "date": "2020-12-17",
            "count": 1
          },
          {
            "date": "2020-12-21",
            "count": 1
          },
          {
            "date": "2021-01-18",
            "count": 1
          },
          {
            "date": "2021-02-15",
            "count": 1
          },
          {
            "date": "2021-02-16",
            "count": 1
          },
          {
            "date": "2021-04-20",
            "count": 1
          },
          {
            "date": "2021-04-22",
            "count": 1
          },
          {
            "date": "2021-04-24",
            "count": 1
          },
          {
            "date": "2021-04-26",
            "count": 1
          },
          {
            "date": "2021-05-25",
            "count": 1
          },
          {
            "date": "2021-06-10",
            "count": 1
          },
          {
            "date": "2021-07-07",
            "count": 1
          },
          {
            "date": "2021-07-09",
            "count": 1
          },
          {
            "date": "2021-08-07",
            "count": 1
          },
          {
            "date": "2021-09-10",
            "count": 1
          },
          {
            "date": "2021-10-08",
            "count": 1
          },
          {
            "date": "2021-10-14",
            "count": 1
          },
          {
            "date": "2021-11-10",
            "count": 1
          },
          {
            "date": "2021-11-15",
            "count": 1
          },
          {
            "date": "2021-12-01",
            "count": 1
          },
          {
            "date": "2021-12-29",
            "count": 1
          },
          {
            "date": "2022-01-02",
            "count": 1
          },
          {
            "date": "2022-01-05",
            "count": 2
          },
          {
            "date": "2022-01-07",
            "count": 1
          },
          {
            "date": "2022-01-10",
            "count": 1
          },
          {
            "date": "2022-02-09",
            "count": 1
          },
          {
            "date": "2022-03-01",
            "count": 1
          },
          {
            "date": "2022-03-03",
            "count": 1
          },
          {
            "date": "2022-04-14",
            "count": 1
          },
          {
            "date": "2022-04-25",
            "count": 2
          },
          {
            "date": "2022-04-30",
            "count": 1
          },
          {
            "date": "2022-05-18",
            "count": 1
          },
          {
            "date": "2022-05-19",
            "count": 1
          },
          {
            "date": "2022-05-25",
            "count": 1
          },
          {
            "date": "2022-07-19",
            "count": 1
          },
          {
            "date": "2022-08-17",
            "count": 1
          },
          {
            "date": "2022-09-30",
            "count": 1
          },
          {
            "date": "2022-11-02",
            "count": 2
          },
          {
            "date": "2022-11-21",
            "count": 1
          },
          {
            "date": "2022-11-22",
            "count": 1
          },
          {
            "date": "2023-01-03",
            "count": 1
          },
          {
            "date": "2023-03-02",
            "count": 1
          },
          {
            "date": "2023-04-18",
            "count": 1
          },
          {
            "date": "2023-04-24",
            "count": 1
          },
          {
            "date": "2023-05-30",
            "count": 1
          },
          {
            "date": "2023-09-06",
            "count": 1
          },
          {
            "date": "2023-10-10",
            "count": 1
          },
          {
            "date": "2023-10-22",
            "count": 1
          },
          {
            "date": "2023-11-09",
            "count": 1
          },
          {
            "date": "2023-12-12",
            "count": 1
          },
          {
            "date": "2023-12-13",
            "count": 1
          },
          {
            "date": "2024-01-08",
            "count": 1
          },
          {
            "date": "2024-02-12",
            "count": 1
          },
          {
            "date": "2024-02-17",
            "count": 1
          },
          {
            "date": "2024-05-28",
            "count": 1
          },
          {
            "date": "2024-12-09",
            "count": 1
          },
          {
            "date": "2025-01-11",
            "count": 1
          },
          {
            "date": "2025-02-11",
            "count": 1
          },
          {
            "date": "2025-02-26",
            "count": 1
          },
          {
            "date": "2025-02-27",
            "count": 1
          },
          {
            "date": "2025-05-20",
            "count": 2
          },
          {
            "date": "2025-08-05",
            "count": 1
          },
          {
            "date": "2025-08-22",
            "count": 1
          },
          {
            "date": "2025-12-22",
            "count": 1
          },
          {
            "date": "2026-04-09",
            "count": 1
          },
          {
            "date": "2026-06-09",
            "count": 1
          },
          {
            "date": "2026-06-14",
            "count": 1
          },
          {
            "date": "2026-06-29",
            "count": 1
          },
          {
            "date": "2026-07-01",
            "count": 1
          },
          {
            "date": "2026-07-07",
            "count": 1
          }
        ],
        "complete": true,
        "collected": 80,
        "total_forks": 81
      },
      "star_history": null,
      "open_issues_and_prs": 131
    },
    "ai_readiness": {
      "has_nix": false,
      "example_dirs": [
        "notebooks"
      ],
      "has_llms_txt": false,
      "has_dockerfile": true,
      "has_mcp_signal": false,
      "bootstrap_files": [],
      "api_schema_files": [],
      "has_devcontainer": false,
      "typecheck_configs": [],
      "toolchain_manifests": [],
      "largest_source_bytes": 120131,
      "source_files_sampled": 255,
      "oversized_source_files": 3,
      "agent_instruction_files": [],
      "agent_instruction_max_bytes": null
    },
    "dependencies": {
      "manifests": [
        "website/package.json"
      ],
      "advisories": {
        "error": null,
        "scope": "published_package",
        "source": "osv",
        "findings": [],
        "collected": true,
        "malicious": [],
        "truncated": false,
        "by_severity": {},
        "advisory_count": 0,
        "affected_count": 0,
        "assessed_count": 12,
        "malicious_count": 0,
        "assessed_package": "pypi:svtk@0.2.0",
        "unassessed_count": 0,
        "direct_affected_count": 0
      },
      "ecosystems": [
        "npm"
      ],
      "dependencies": [
        {
          "name": "@docusaurus/core",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^3.10.1"
        },
        {
          "name": "@docusaurus/plugin-google-gtag",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^3.10.1"
        },
        {
          "name": "@docusaurus/preset-classic",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^3.10.1"
        },
        {
          "name": "@docusaurus/theme-mermaid",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^3.10.1"
        },
        {
          "name": "@mdx-js/react",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^3.0.0"
        },
        {
          "name": "clsx",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^2.0.0"
        },
        {
          "name": "prism-react-renderer",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^2.3.0"
        },
        {
          "name": "react",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^18.0.0"
        },
        {
          "name": "react-dom",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^18.0.0"
        }
      ],
      "all_dependencies": {
        "error": null,
        "source": "github-sbom",
        "packages": [
          {
            "name": "@docusaurus/core",
            "direct": true,
            "version": "^3.10.1",
            "ecosystem": "npm"
          },
          {
            "name": "@docusaurus/plugin-google-gtag",
            "direct": true,
            "version": "^3.10.1",
            "ecosystem": "npm"
          },
          {
            "name": "@docusaurus/preset-classic",
            "direct": true,
            "version": "^3.10.1",
            "ecosystem": "npm"
          },
          {
            "name": "@docusaurus/theme-mermaid",
            "direct": true,
            "version": "^3.10.1",
            "ecosystem": "npm"
          },
          {
            "name": "@mdx-js/react",
            "direct": true,
            "version": "^3.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "clsx",
            "direct": true,
            "version": "^2.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "prism-react-renderer",
            "direct": true,
            "version": "^2.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "react",
            "direct": true,
            "version": "^18.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "react-dom",
            "direct": true,
            "version": "^18.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "@docusaurus/module-type-aliases",
            "direct": false,
            "version": "^3.10.1",
            "ecosystem": "npm"
          },
          {
            "name": "@docusaurus/types",
            "direct": false,
            "version": "^3.10.1",
            "ecosystem": "npm"
          },
          {
            "name": "argparse",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "click",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "cython",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "dill",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "intervaltree",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "jsonschema",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "matplotlib",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "multiprocessing-logging",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "natsort",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "nose",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "numpy",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "openpyxl",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pandas",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "plotly",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "psutil",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pybedtools",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pympler",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pysam",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "requests",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "scipy",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "seaborn",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "setuptools",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "statsmodels",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "tqdm",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "urllib3",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "wheel",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "xlsxwriter",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          }
        ],
        "collected": true,
        "truncated": false,
        "total_count": 38,
        "direct_count": 9,
        "indirect_count": 29
      }
    },
    "maintainership": {
      "issues": {
        "open_prs": 32,
        "merged_prs": 560,
        "open_issues": 99,
        "closed_ratio": 0.637,
        "closed_issues": 174,
        "closed_unmerged_prs": 81
      },
      "bus_factor": 3,
      "bot_contributors": 0,
      "top_contributors": [
        {
          "type": "User",
          "login": "VJalili",
          "commits": 170,
          "avatar_url": "https://avatars.githubusercontent.com/u/9027482?v=4"
        },
        {
          "type": "User",
          "login": "epiercehoffman",
          "commits": 133,
          "avatar_url": "https://avatars.githubusercontent.com/u/13224570?v=4"
        },
        {
          "type": "User",
          "login": "gatk-sv-bot",
          "commits": 109,
          "avatar_url": "https://avatars.githubusercontent.com/u/101641599?v=4"
        },
        {
          "type": "User",
          "login": "mwalker174",
          "commits": 107,
          "avatar_url": "https://avatars.githubusercontent.com/u/5686877?v=4"
        },
        {
          "type": "User",
          "login": "kjaisingh",
          "commits": 36,
          "avatar_url": "https://avatars.githubusercontent.com/u/31686667?v=4"
        },
        {
          "type": "User",
          "login": "cwhelan",
          "commits": 33,
          "avatar_url": "https://avatars.githubusercontent.com/u/709477?v=4"
        },
        {
          "type": "User",
          "login": "TedBrookings",
          "commits": 18,
          "avatar_url": "https://avatars.githubusercontent.com/u/6463752?v=4"
        },
        {
          "type": "User",
          "login": "kirtanav98",
          "commits": 13,
          "avatar_url": "https://avatars.githubusercontent.com/u/123595850?v=4"
        },
        {
          "type": "User",
          "login": "tedsharpe",
          "commits": 10,
          "avatar_url": "https://avatars.githubusercontent.com/u/9284156?v=4"
        },
        {
          "type": "User",
          "login": "RCollins13",
          "commits": 10,
          "avatar_url": "https://avatars.githubusercontent.com/u/7913924?v=4"
        }
      ],
      "contributors_sampled": 20,
      "top_contributor_share": 0.254
    },
    "quality_signals": {
      "has_ci": true,
      "has_tests": true,
      "ci_workflows": [
        "docs.yml",
        "pytest.yaml",
        "readonly_check.yaml",
        "sv_pipeline_docker.yml",
        "testwdls.yaml"
      ],
      "has_docs_dir": false,
      "linter_configs": [
        "tox.ini"
      ],
      "has_editorconfig": false,
      "has_linter_config": true,
      "has_precommit_config": false
    },
    "security_signals": {
      "lockfiles": [],
      "scorecard": {
        "checks": [
          {
            "name": "Binary-Artifacts",
            "score": 9,
            "reason": "binaries present in source code",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
          },
          {
            "name": "Branch-Protection",
            "score": null,
            "reason": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
          },
          {
            "name": "CI-Tests",
            "score": 10,
            "reason": "25 out of 25 merged PRs checked by a CI test -- score normalized to 10",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
          },
          {
            "name": "CII-Best-Practices",
            "score": 0,
            "reason": "no effort to earn an OpenSSF best practices badge detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
          },
          {
            "name": "Code-Review",
            "score": 8,
            "reason": "Found 25/30 approved changesets -- score normalized to 8",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
          },
          {
            "name": "Contributors",
            "score": 10,
            "reason": "project has 8 contributing companies or organizations",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
          },
          {
            "name": "Dangerous-Workflow",
            "score": 10,
            "reason": "no dangerous workflow patterns detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
          },
          {
            "name": "Dependency-Update-Tool",
            "score": 0,
            "reason": "no update tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
          },
          {
            "name": "Fuzzing",
            "score": 0,
            "reason": "project is not fuzzed",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
          },
          {
            "name": "License",
            "score": 10,
            "reason": "license file detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
          },
          {
            "name": "Maintained",
            "score": 10,
            "reason": "13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
          },
          {
            "name": "Packaging",
            "score": null,
            "reason": "packaging workflow not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
          },
          {
            "name": "Pinned-Dependencies",
            "score": 0,
            "reason": "dependency not pinned by hash detected -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
          },
          {
            "name": "SAST",
            "score": 5,
            "reason": "SAST tool is not run on all commits -- score normalized to 5",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
          },
          {
            "name": "Security-Policy",
            "score": 0,
            "reason": "security policy file not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
          },
          {
            "name": "Signed-Releases",
            "score": null,
            "reason": "no releases found",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
          },
          {
            "name": "Token-Permissions",
            "score": 0,
            "reason": "detected GitHub workflow tokens with excessive permissions",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
          },
          {
            "name": "Vulnerabilities",
            "score": 10,
            "reason": "0 existing vulnerabilities detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
          }
        ],
        "commit": "0ccbe08ec7f90cdc8ff5bc81749ec7245c48bf8b",
        "ran_at": "2026-07-31T20:24:47Z",
        "aggregate_score": 5.6,
        "scorecard_version": "v5.5.0"
      },
      "has_codeql_workflow": false,
      "has_security_policy": false,
      "has_dependabot_config": false
    },
    "contribution_flow": {
      "collected": true,
      "ci_last_run_at": "2026-07-30T17:05:46Z",
      "oldest_open_prs": [
        {
          "number": 364,
          "created_at": "2022-06-29T16:00:17Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 416,
          "created_at": "2022-09-23T00:34:32Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 435,
          "created_at": "2022-10-05T16:37:34Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 446,
          "created_at": "2022-10-12T15:35:51Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 496,
          "created_at": "2023-02-11T13:20:02Z",
          "last_comment_at": "2023-02-16T19:26:20Z",
          "last_comment_author": "VJalili"
        },
        {
          "number": 533,
          "created_at": "2023-05-11T20:30:50Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 617,
          "created_at": "2023-11-09T20:13:22Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 633,
          "created_at": "2024-01-31T15:26:13Z",
          "last_comment_at": "2024-04-29T15:16:41Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 644,
          "created_at": "2024-02-12T21:07:27Z",
          "last_comment_at": "2024-02-14T16:52:32Z",
          "last_comment_author": "VJalili"
        },
        {
          "number": 653,
          "created_at": "2024-03-08T18:54:28Z",
          "last_comment_at": "2024-04-29T16:46:02Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 654,
          "created_at": "2024-03-11T18:16:53Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 662,
          "created_at": "2024-04-02T17:12:00Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 668,
          "created_at": "2024-04-25T19:55:57Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 675,
          "created_at": "2024-05-13T16:43:25Z",
          "last_comment_at": "2024-09-11T16:55:41Z",
          "last_comment_author": "VJalili"
        },
        {
          "number": 765,
          "created_at": "2025-01-06T19:03:21Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 804,
          "created_at": "2025-04-25T20:23:39Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 806,
          "created_at": "2025-05-01T16:15:37Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 810,
          "created_at": "2025-05-09T17:22:34Z",
          "last_comment_at": "2025-05-27T15:41:11Z",
          "last_comment_author": "epiercehoffman"
        },
        {
          "number": 816,
          "created_at": "2025-05-27T15:36:16Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 821,
          "created_at": "2025-06-09T05:52:24Z",
          "last_comment_at": "2025-06-10T20:31:52Z",
          "last_comment_author": "epiercehoffman"
        }
      ],
      "last_merged_pr_at": "2026-07-30T17:05:08Z",
      "ci_last_conclusion": "SUCCESS",
      "oldest_open_issues": [
        {
          "number": 16,
          "created_at": "2020-07-01T16:44:42Z",
          "last_comment_at": "2022-05-13T17:52:35Z",
          "last_comment_author": "ekarlins"
        },
        {
          "number": 49,
          "created_at": "2020-09-10T14:24:14Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 52,
          "created_at": "2020-09-10T15:58:09Z",
          "last_comment_at": "2021-11-16T21:45:14Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 81,
          "created_at": "2020-11-16T17:53:18Z",
          "last_comment_at": "2021-11-16T21:21:00Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 103,
          "created_at": "2021-01-28T18:43:25Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 161,
          "created_at": "2021-05-06T13:34:24Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 166,
          "created_at": "2021-05-12T19:06:36Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 181,
          "created_at": "2021-06-10T15:45:41Z",
          "last_comment_at": "2021-11-16T21:27:01Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 201,
          "created_at": "2021-07-20T23:51:32Z",
          "last_comment_at": "2025-07-26T19:06:34Z",
          "last_comment_author": "kjaisingh"
        },
        {
          "number": 223,
          "created_at": "2021-09-03T16:15:41Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 234,
          "created_at": "2021-09-17T18:02:51Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 265,
          "created_at": "2021-11-22T15:56:36Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 269,
          "created_at": "2021-12-01T17:34:49Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 277,
          "created_at": "2022-01-04T21:05:39Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 310,
          "created_at": "2022-03-14T16:35:53Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 327,
          "created_at": "2022-04-01T14:59:28Z",
          "last_comment_at": "2024-06-12T16:40:32Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 336,
          "created_at": "2022-04-25T16:41:35Z",
          "last_comment_at": "2022-08-26T14:53:58Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 355,
          "created_at": "2022-06-10T13:21:15Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 360,
          "created_at": "2022-06-21T16:03:29Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 363,
          "created_at": "2022-06-29T15:03:35Z",
          "last_comment_at": "2023-04-27T15:45:14Z",
          "last_comment_author": "alsanju"
        }
      ]
    }
  },
  "config": {
    "disabled_metrics": [],
    "disabled_categories": [],
    "disabled_components": {}
  },
  "source": {
    "url": "https://github.com/broadinstitute/gatk-sv",
    "host": "github.com",
    "name": "gatk-sv",
    "owner": "broadinstitute"
  },
  "metrics": {
    "overall": {
      "key": "overall",
      "band": "excellent",
      "name": "Overall health",
      "note": "The weighted overall 74 is calibrated to 88 on the published index scale (record calibration 2026-08-02).",
      "notes": [
        {
          "code": "overall_calibration",
          "params": {
            "raw": 74,
            "calibrated": 88,
            "calibration": "2026-08-02"
          }
        }
      ],
      "value": 88,
      "inputs": {
        "security": 65,
        "vitality": 86,
        "community": 71,
        "governance": 76,
        "calibration": "2026-08-02",
        "engineering": 76,
        "ai_readiness": 42,
        "weighted_overall_raw": 74
      },
      "components": []
    },
    "categories": [
      {
        "key": "vitality",
        "band": "excellent",
        "name": "Vitality",
        "value": 86,
        "weight": 0.21,
        "metrics": [
          {
            "key": "development_activity",
            "band": "excellent",
            "name": "Development activity",
            "note": null,
            "notes": [],
            "value": 82,
            "inputs": {
              "commits_last_year": 94,
              "human_commit_share": 1,
              "days_since_last_push": 0,
              "active_weeks_last_year": 26
            },
            "components": [
              {
                "key": "push_recency",
                "name": "Push recency",
                "detail": "last push 0 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "push_recency",
                    "params": {
                      "days": 0
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_cadence",
                "name": "Commit cadence",
                "detail": "26/52 weeks with commits",
                "points": 18,
                "status": "partial",
                "details": [
                  {
                    "code": "commit_cadence_weeks",
                    "params": {
                      "weeks": 26
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_volume",
                "name": "Commit volume",
                "detail": "94 commits in the last year",
                "points": 17.8,
                "status": "partial",
                "details": [
                  {
                    "code": "commits_last_year",
                    "params": {
                      "count": 94
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "openssf_scorecard_maintained",
                "name": "OpenSSF Scorecard: Maintained",
                "detail": "13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "release_discipline",
            "band": "excellent",
            "name": "Release discipline",
            "note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "openssf_scorecard_signed_releases"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 92,
            "inputs": {
              "releases_count": 79,
              "latest_release_tag": "v1.1.1",
              "releases_from_tags": false,
              "days_since_latest_release": 17,
              "mean_days_between_releases": 77
            },
            "components": [
              {
                "key": "ships_releases",
                "name": "Ships releases",
                "detail": "79 releases published",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "releases_published",
                    "params": {
                      "count": 79
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "release_recency",
                "name": "Release recency",
                "detail": "latest release 17 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "release_recency",
                    "params": {
                      "days": 17
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "release_cadence",
                "name": "Release cadence",
                "detail": "a release every ~77 days",
                "points": 19.8,
                "status": "partial",
                "details": [
                  {
                    "code": "release_cadence",
                    "params": {
                      "gap": 77
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "openssf_scorecard_signed_releases",
                "name": "OpenSSF Scorecard: Signed-Releases",
                "detail": "no releases found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 10
              }
            ]
          },
          {
            "key": "abandonment",
            "band": "exceptional",
            "name": "Abandonment",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "cap": null,
              "state": "maintained",
              "guards": [],
              "signals": [],
              "red_flag": false,
              "multiplier_pct": 100,
              "declared_reason": null,
              "unverified_reason": null,
              "unanswered_open_prs": null,
              "unanswered_open_issues": null,
              "days_since_last_merged_pr": null,
              "days_since_last_human_commit": 3,
              "days_since_last_human_commit_is_floor": false
            },
            "components": [
              {
                "key": "project_is_still_maintained",
                "name": "Project is still maintained",
                "detail": "last human commit 3 days ago",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "abandonment_maintained",
                    "params": {
                      "days": 3
                    }
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Is the project alive — is code being written and are releases shipping?"
      },
      {
        "key": "community",
        "band": "good",
        "name": "Community & Adoption",
        "value": 71,
        "weight": 0.17,
        "metrics": [
          {
            "key": "popularity",
            "band": "moderate",
            "name": "Popularity & adoption",
            "note": null,
            "notes": [],
            "value": 59,
            "inputs": {
              "forks": 81,
              "stars": 206,
              "watchers": 11,
              "growth_state": "unverified",
              "growth_factor_pct": 100,
              "growth_unverified_reason": "no_history"
            },
            "components": [
              {
                "key": "stars",
                "name": "Stars",
                "detail": "206 stars",
                "points": 37.5,
                "status": "partial",
                "details": [
                  {
                    "code": "stars",
                    "params": {
                      "count": 206
                    }
                  }
                ],
                "max_points": 60
              },
              {
                "key": "forks",
                "name": "Forks",
                "detail": "81 forks",
                "points": 15.9,
                "status": "partial",
                "details": [
                  {
                    "code": "forks",
                    "params": {
                      "count": 81
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "watchers",
                "name": "Watchers",
                "detail": "11 watchers",
                "points": 5.6,
                "status": "partial",
                "details": [
                  {
                    "code": "watchers",
                    "params": {
                      "count": 11
                    }
                  }
                ],
                "max_points": 15
              }
            ]
          },
          {
            "key": "community_health",
            "band": "excellent",
            "name": "Community health",
            "note": null,
            "notes": [],
            "value": 85,
            "inputs": {
              "has_readme": true,
              "has_license": true,
              "readme_badges": null,
              "has_contributing": true,
              "has_issue_template": false,
              "has_code_of_conduct": true,
              "readme_badge_services": [],
              "has_pull_request_template": false
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 22.5,
                "status": "met",
                "details": [],
                "max_points": 22.5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "recognized license (BSD-3-Clause)",
                "points": 22.5,
                "status": "met",
                "details": [
                  {
                    "code": "license_standard",
                    "params": {}
                  },
                  {
                    "code": "license_spdx",
                    "params": {
                      "spdx": "BSD-3-Clause"
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributing_guide",
                "name": "CONTRIBUTING guide",
                "detail": null,
                "points": 18,
                "status": "met",
                "details": [],
                "max_points": 18
              },
              {
                "key": "code_of_conduct",
                "name": "Code of conduct",
                "detail": null,
                "points": 13.5,
                "status": "met",
                "details": [],
                "max_points": 13.5
              },
              {
                "key": "issue_template",
                "name": "Issue template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.2
              },
              {
                "key": "pr_template",
                "name": "PR template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.3
              }
            ]
          }
        ],
        "description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
      },
      {
        "key": "governance",
        "band": "good",
        "name": "Sustainability & Governance",
        "value": 76,
        "weight": 0.23,
        "metrics": [
          {
            "key": "maintainer_resilience",
            "band": "good",
            "name": "Maintainer resilience (bus factor)",
            "note": null,
            "notes": [],
            "value": 76,
            "inputs": {
              "bus_factor": 3,
              "contributors_sampled": 20,
              "top_contributor_share": 0.254
            },
            "components": [
              {
                "key": "bus_factor",
                "name": "Bus factor",
                "detail": "3 contributor(s) cover half of all commits",
                "points": 36,
                "status": "partial",
                "details": [
                  {
                    "code": "bus_factor",
                    "params": {
                      "count": 3
                    }
                  }
                ],
                "max_points": 54
              },
              {
                "key": "commit_distribution",
                "name": "Commit distribution",
                "detail": "top contributor authored 25% of commits",
                "points": 16.8,
                "status": "partial",
                "details": [
                  {
                    "code": "top_contributor_share",
                    "params": {
                      "share": 25
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributor_breadth",
                "name": "Contributor breadth",
                "detail": "20 contributors",
                "points": 13.5,
                "status": "met",
                "details": [
                  {
                    "code": "contributors_sampled",
                    "params": {
                      "count": 20
                    }
                  }
                ],
                "max_points": 13.5
              },
              {
                "key": "openssf_scorecard_contributors",
                "name": "OpenSSF Scorecard: Contributors",
                "detail": "project has 8 contributing companies or organizations",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "responsiveness",
            "band": "good",
            "name": "Issue & PR responsiveness",
            "note": "Excluded from scoring (no data or not applicable): Newcomer PR acceptance. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "newcomer_pr_acceptance"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 75,
            "inputs": {
              "merged_prs": 560,
              "open_issues": 99,
              "closed_issues": 174,
              "prs_merged_7d": null,
              "prs_decided_7d": null,
              "prs_merged_30d": null,
              "prs_decided_30d": null,
              "issue_closed_ratio": 0.637,
              "closed_unmerged_prs": 81,
              "first_time_authors_30d": null,
              "first_time_prs_merged_30d": null,
              "first_time_prs_decided_30d": null
            },
            "components": [
              {
                "key": "issue_resolution",
                "name": "Issue resolution",
                "detail": "64% of issues closed",
                "points": 26.8,
                "status": "partial",
                "details": [
                  {
                    "code": "issues_closed_share",
                    "params": {
                      "share": 64
                    }
                  }
                ],
                "max_points": 42
              },
              {
                "key": "pr_acceptance",
                "name": "PR acceptance",
                "detail": "560/641 decided PRs merged",
                "points": 26.2,
                "status": "partial",
                "details": [
                  {
                    "code": "decided_prs_merged",
                    "params": {
                      "merged": 560,
                      "decided": 641
                    }
                  }
                ],
                "max_points": 30
              },
              {
                "key": "newcomer_pr_acceptance",
                "name": "Newcomer PR acceptance",
                "detail": "no first-time contributor's PR decided in 30d",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_newcomer_prs",
                    "params": {
                      "days": 30
                    }
                  }
                ],
                "max_points": 13
              },
              {
                "key": "openssf_scorecard_code_review",
                "name": "OpenSSF Scorecard: Code-Review",
                "detail": "Found 25/30 approved changesets -- score normalized to 8",
                "points": 12,
                "status": "partial",
                "details": [],
                "max_points": 15
              }
            ]
          },
          {
            "key": "stewardship",
            "band": "good",
            "name": "Ownership & stewardship",
            "note": null,
            "notes": [],
            "value": 77,
            "inputs": {
              "followers": 1290,
              "owner_type": "Organization",
              "is_verified": null,
              "owner_login": "broadinstitute",
              "public_repos": 1515,
              "account_age_days": 5804
            },
            "components": [
              {
                "key": "ownership_backing",
                "name": "Ownership backing",
                "detail": "organization-owned",
                "points": 30,
                "status": "met",
                "details": [
                  {
                    "code": "owner_organization",
                    "params": {}
                  }
                ],
                "max_points": 30
              },
              {
                "key": "verified_domain",
                "name": "Verified domain",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "owner_reach",
                "name": "Owner reach",
                "detail": "1,290 followers of broadinstitute",
                "points": 22.4,
                "status": "partial",
                "details": [
                  {
                    "code": "owner_followers",
                    "params": {
                      "count": 1290,
                      "login": "broadinstitute"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "track_record",
                "name": "Track record",
                "detail": "1515 public repos, account ~15 yr old",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "public_repos",
                    "params": {
                      "count": 1515
                    }
                  },
                  {
                    "code": "account_age_years",
                    "params": {
                      "years": 15
                    }
                  }
                ],
                "max_points": 25
              }
            ]
          }
        ],
        "description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
      },
      {
        "key": "engineering",
        "band": "good",
        "name": "Engineering Quality",
        "value": 76,
        "weight": 0.19,
        "metrics": [
          {
            "key": "engineering_practices",
            "band": "excellent",
            "name": "Engineering practices",
            "note": null,
            "notes": [],
            "value": 84,
            "inputs": {
              "has_ci": true,
              "has_tests": true,
              "has_editorconfig": false,
              "has_linter_config": true,
              "has_precommit_config": false
            },
            "components": [
              {
                "key": "ci_workflows",
                "name": "CI workflows",
                "detail": "5 workflow(s)",
                "points": 24,
                "status": "met",
                "details": [
                  {
                    "code": "ci_workflows",
                    "params": {
                      "count": 5
                    }
                  }
                ],
                "max_points": 24
              },
              {
                "key": "tests_present",
                "name": "Tests present",
                "detail": null,
                "points": 24,
                "status": "met",
                "details": [],
                "max_points": 24
              },
              {
                "key": "linter_config",
                "name": "Linter config",
                "detail": "tox.ini",
                "points": 16,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "tox.ini"
                    }
                  }
                ],
                "max_points": 16
              },
              {
                "key": "pre_commit_hooks",
                "name": "Pre-commit hooks",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 9.6
              },
              {
                "key": "editorconfig",
                "name": ".editorconfig",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.4
              },
              {
                "key": "openssf_scorecard_ci_tests",
                "name": "OpenSSF Scorecard: CI-Tests",
                "detail": "25 out of 25 merged PRs checked by a CI test -- score normalized to 10",
                "points": 20,
                "status": "met",
                "details": [],
                "max_points": 20
              }
            ]
          },
          {
            "key": "documentation",
            "band": "good",
            "name": "Documentation",
            "note": null,
            "notes": [],
            "value": 65,
            "inputs": {
              "topics": [
                "genomics",
                "structural-variants",
                "structural-variation",
                "bioinformatics"
              ],
              "has_wiki": false,
              "homepage": "https://broadinstitute.github.io/gatk-sv/",
              "has_readme": true,
              "has_docs_dir": false,
              "has_description": true
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 30,
                "status": "met",
                "details": [],
                "max_points": 30
              },
              {
                "key": "documentation_directory",
                "name": "Documentation directory",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 25
              },
              {
                "key": "documentation_homepage_site",
                "name": "Documentation / homepage site",
                "detail": "https://broadinstitute.github.io/gatk-sv/",
                "points": 15,
                "status": "met",
                "details": [],
                "max_points": 15
              },
              {
                "key": "repository_description",
                "name": "Repository description",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "topics",
                "name": "Topics",
                "detail": "4 topics",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "topics_count",
                    "params": {
                      "count": 4
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "wiki",
                "name": "Wiki",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
      },
      {
        "key": "security",
        "band": "good",
        "name": "Security",
        "value": 65,
        "weight": 0.16,
        "metrics": [
          {
            "key": "security_posture",
            "band": "moderate",
            "name": "Security posture",
            "note": "Excluded from scoring (no data or not applicable): Branch-Protection, Packaging, Signed-Releases. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "branch_protection",
                    "packaging",
                    "signed_releases"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 56,
            "inputs": {
              "source": "openssf_scorecard",
              "checks_evaluated": 15,
              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 3,
              "scorecard_aggregate": 5.6
            },
            "components": [
              {
                "key": "binary_artifacts",
                "name": "Binary-Artifacts",
                "detail": "binaries present in source code",
                "points": 6.8,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "ci_tests",
                "name": "CI-Tests",
                "detail": "25 out of 25 merged PRs checked by a CI test -- score normalized to 10",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "code_review",
                "name": "Code-Review",
                "detail": "Found 25/30 approved changesets -- score normalized to 8",
                "points": 6,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 8 contributing companies or organizations",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no dangerous workflow patterns detected",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "no update tool detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow not detected",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
                "detail": "SAST tool is not run on all commits -- score normalized to 5",
                "points": 2.5,
                "status": "partial",
                "details": [],
                "max_points": 5
              },
              {
                "key": "security_policy",
                "name": "Security-Policy",
                "detail": "security policy file not detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "signed_releases",
                "name": "Signed-Releases",
                "detail": "no releases found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "detected GitHub workflow tokens with excessive permissions",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "0 existing vulnerabilities detected",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              }
            ]
          },
          {
            "key": "dependency_advisories",
            "band": "exceptional",
            "name": "Dependency advisories",
            "note": "Excluded from scoring (no data or not applicable): No advisories left outstanding. Remaining weights renormalized. Matched the pypi:svtk@0.2.0 runtime dependency closure — what installing the published package pulls in — 12 packages. Reachability is not analyzed.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "no_advisories_left_outstanding"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              },
              {
                "code": "advisories_scope_published",
                "params": {
                  "package": "pypi:svtk@0.2.0",
                  "assessed": 12
                }
              },
              {
                "code": "advisories_reachability",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "source": "osv",
              "advisories": 0,
              "affected_packages": 0,
              "assessed_packages": 12,
              "unassessed_packages": 0,
              "affected_by_severity": "none",
              "direct_affected_packages": 0
            },
            "components": [
              {
                "key": "direct_dependencies_free_of_known_advisories",
                "name": "Direct dependencies free of known advisories",
                "detail": "no direct dependency carries a known advisory",
                "points": 35,
                "status": "met",
                "details": [
                  {
                    "code": "no_direct_advisories",
                    "params": {}
                  }
                ],
                "max_points": 35
              },
              {
                "key": "indirect_dependencies_free_of_known_advisories",
                "name": "Indirect dependencies free of known advisories",
                "detail": "no indirect dependency carries a known advisory",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "no_indirect_advisories",
                    "params": {}
                  }
                ],
                "max_points": 25
              },
              {
                "key": "no_advisories_left_outstanding",
                "name": "No advisories left outstanding",
                "detail": "no advisory carries a publication date",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "advisories_no_publication_date",
                    "params": {}
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "malicious_dependencies",
            "band": "exceptional",
            "name": "Malicious dependencies",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "source": "osv",
              "meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
              "packages": [],
              "red_flag": false,
              "assessed_packages": 12,
              "malicious_packages": 0,
              "direct_malicious_packages": 0,
              "withdrawn_malicious_packages": 0,
              "installable_malicious_packages": 0
            },
            "components": [
              {
                "key": "no_dependency_reported_as_a_malicious_package",
                "name": "No dependency reported as a malicious package",
                "detail": "no dependency is reported as a malicious package",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "no_malicious_dependencies",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          },
          {
            "key": "high_risk_jurisdiction_exposure",
            "band": "exceptional",
            "name": "High-Risk Jurisdiction Exposure",
            "note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
            "notes": [
              {
                "code": "jurisdiction_evidence_limits",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "meaning": "self-published location evidence; not nationality or citizenship",
              "red_flag": false,
              "exposures": [],
              "policy_countries": [
                "Russia",
                "Iran",
                "North Korea"
              ],
              "commit_weight_rule": {
                "min_commits": 50,
                "min_commit_share": 0.1
              },
              "review_only_matches": 0,
              "below_threshold_exposures": [],
              "assessed_self_published_locations": 6
            },
            "components": [
              {
                "key": "policy_exposure_multiplier",
                "name": "Policy exposure multiplier",
                "detail": "no confirmed policy-scope location match",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "jurisdiction_no_match",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "weak",
        "name": "AI Readiness",
        "value": 42,
        "weight": 0.04,
        "metrics": [
          {
            "key": "ai_agent_context",
            "band": "weak",
            "name": "Agent context & guidance",
            "note": null,
            "notes": [],
            "value": 37,
            "inputs": {
              "has_llms_txt": false,
              "legible_history_share": 0.7,
              "agent_instruction_files": [],
              "agent_instruction_max_bytes": null
            },
            "components": [
              {
                "key": "agent_instructions",
                "name": "Agent instructions",
                "detail": "no CLAUDE.md / AGENTS.md / editor rules",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_instructions",
                    "params": {}
                  }
                ],
                "max_points": 45
              },
              {
                "key": "machine_readable_docs_llms_txt",
                "name": "Machine-readable docs (llms.txt)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "legible_commit_history",
                "name": "Legible commit history",
                "detail": "70 of 100 human commits state their intent (structured subject or explanatory body)",
                "points": 37.3,
                "status": "partial",
                "details": [
                  {
                    "code": "legible_history",
                    "params": {
                      "legible": 70,
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "ai_verify_loop",
            "band": "weak",
            "name": "Verify loop (build / test / typecheck)",
            "note": null,
            "notes": [],
            "value": 43,
            "inputs": {
              "has_nix": false,
              "has_tests": true,
              "lockfiles": [],
              "has_dockerfile": true,
              "typed_language": false,
              "bootstrap_files": [],
              "has_devcontainer": false,
              "has_linter_config": true,
              "typecheck_configs": [],
              "agent_commit_share": 0,
              "toolchain_manifests": [],
              "dependency_bot_commit_share": 0
            },
            "components": [
              {
                "key": "one_command_bootstrap",
                "name": "One-command bootstrap",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 18
              },
              {
                "key": "automated_tests",
                "name": "Automated tests",
                "detail": null,
                "points": 22,
                "status": "met",
                "details": [],
                "max_points": 22
              },
              {
                "key": "lint_format_config",
                "name": "Lint / format config",
                "detail": "tox.ini",
                "points": 11,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "tox.ini"
                    }
                  }
                ],
                "max_points": 11
              },
              {
                "key": "static_type_checking",
                "name": "Static type checking",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
              },
              {
                "key": "reproducible_environment",
                "name": "Reproducible environment",
                "detail": "Dockerfile",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "Dockerfile"
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "demonstrated_agent_practice",
                "name": "Demonstrated agent practice",
                "detail": "no agent-authored commits among the last 100",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_authored_commits",
                    "params": {
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "automated_maintenance",
                "name": "Automated maintenance",
                "detail": "no automated dependency updates observed",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_dependency_automation",
                    "params": {}
                  }
                ],
                "max_points": 8
              },
              {
                "key": "openssf_scorecard_pinned_dependencies",
                "name": "OpenSSF Scorecard: Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "ai_code_legibility",
            "band": "moderate",
            "name": "Code legibility for models",
            "note": null,
            "notes": [],
            "value": 54,
            "inputs": {
              "primary_language": "Python",
              "largest_source_bytes": 120131,
              "source_files_sampled": 255,
              "oversized_source_files": 3
            },
            "components": [
              {
                "key": "type_checkable_code",
                "name": "Type-checkable code",
                "detail": "Python without a type-check config",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_typecheck_config_language",
                    "params": {
                      "language": "Python"
                    }
                  }
                ],
                "max_points": 45
              },
              {
                "key": "manageable_file_sizes",
                "name": "Manageable file sizes",
                "detail": "3/255 source files over 60KB",
                "points": 54.4,
                "status": "partial",
                "details": [
                  {
                    "code": "oversized_source_files",
                    "params": {
                      "kb": 60,
                      "sampled": 255,
                      "oversized": 3
                    }
                  }
                ],
                "max_points": 55
              }
            ]
          },
          {
            "key": "ai_interfaces",
            "band": "weak",
            "name": "Machine-readable interfaces",
            "note": null,
            "notes": [],
            "value": 40,
            "inputs": {
              "example_dirs": [
                "notebooks"
              ],
              "has_mcp_signal": false,
              "api_schema_files": []
            },
            "components": [
              {
                "key": "api_schema_openapi_graphql_proto",
                "name": "API schema (OpenAPI/GraphQL/proto)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 40
              },
              {
                "key": "mcp_server",
                "name": "MCP server",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "runnable_examples",
                "name": "Runnable examples",
                "detail": "notebooks",
                "points": 40,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "notebooks"
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          }
        ],
        "description": "How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight: agent tooling is a real maintenance signal, but its absence must never gate the top of the scale (calibration saturates at raw 91, so 100/100 remains reachable with AI Readiness at zero)."
      }
    ],
    "classification": {
      "labels": [
        "web-ui"
      ],
      "scores": {
        "web-ui": 4
      },
      "primary": "web-ui",
      "evidence": [
        {
          "tier": "dependencies",
          "label": "web-ui",
          "source": "dep:react-dom",
          "weight": 4
        }
      ],
      "artifacts": [],
      "confidence": "low",
      "host_extension": false,
      "runs_as_process": true,
      "consumed_by_code": false
    },
    "metrics_version": "2.3.1"
  },
  "warnings": [
    "Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token",
    "Could not fetch pypi package 'svqc' from its registry",
    "pypi package 'svtk' points at a different repository (https://github.com/simleek/displayarray); excluded from ecosystem scoring",
    "Could not fetch pypi package 'svtest' from its registry",
    "pypi package 'sv_utils' points at a different repository (https://github.com/friend1ws/sv_utils); excluded from ecosystem scoring"
  ],
  "report_type": "repository",
  "generated_at": "2026-07-31T20:25:13.675172Z",
  "schema_version": "0.27.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/b/broadinstitute/gatk-sv.svg",
  "full_name": "broadinstitute/gatk-sv",
  "license_state": "standard",
  "license_spdx": "BSD-3-Clause"
}

Las puntuaciones son señales, no garantías. Reflejan prácticas públicamente visibles en GitHub; no son una auditoría de código ni una garantía de seguridad.

Los datos ausentes se excluyen y los pesos se renormalizan; nunca se puntúan como cero. La metodología es versionada y abierta: métricas v2.3.1, esquema v0.27.0 — metodología completa · wiki de métricas.

Cómo se sitúa un resultado dentro del registro general: estadísticas agregadasPyPI.