Публічний реєстр
Звіт про здоров'я програмного забезпеченнясхема 0.27.0 · метрики 2.3.1 · 2026-07-31 20:25 UTC

broadinstitute / gatk-sv

A structural variation pipeline for short-read sequencing

Python · WDL · RBSD-3-Clause★ 206 зірок⑂ 81 форкз черв. 2020 р.Переглянути на GitHub ↗
ТипВебінтерфейсяк це визначено

broadinstitute/gatk-sv має індекс здоров’я 88 зі 100, що відповідає смузі «Відмінний». Найвищий показник — Vitality (86/100), найнижчий — AI Readiness (42/100). Останнє оновлення — сьогодні. Більшість нещодавньої роботи виконують 3 учасники.

88
загалом / 100
Відмінний

Індекс здоров'я програмного забезпечення

Метрики згруповано у зважені категорії на шкалі 1–100. Загальна оцінка починається як їхнє зважене середнє, відкаліброване за розподілом публічного реєстру, тож діапазони мають перцентильний зміст; коли публічні дані активують Політику юрисдикцій високого ризику, рейтинг коригується й отримує верхню межу 34 («У зоні ризику»).

88
Винятковий93-100Верхній щабель реєстру (≈ топ-5%); відповідає практично всім перевіреним критеріям
Відмінний80-92Сильний за всіма напрямами; незначні прогалини
Добрий65-79Здоровий; прогалини обмежені та керовані
Помірний50-64Прийнятний, але з помітними прогалинами; рекомендовано перевірку
Слабкий35-49Суттєві недоліки в кількох сферах
У зоні ризику20-34Суттєві слабкі місця; впровадження потребує обережності
Критичний1-19Серйозні проблеми (покинутий, єдиний мейнтейнер, без базової гігієни)
ЖиттєздатністьСпільнота тавпровадженняСталість таврядуванняІнженернаякістьБезпекаГотовність доШІ

Профіль оцінок

Кожна вісь — окрема категорія. Форма важить більше, ніж середнє: здоровий об'єкт заповнює всю фігуру, тоді як профіль із піками та провалами означає, що сила в одному вимірі маскує ризик в іншому.

Зважений загальний бал 74 калібровано до 88 за шкалою опублікованого індексу (калібрування реєстру 2026-08-02).

Власність

Broad InstituteОрганізація
1 290 підписників1 515 публічних репозиторіївз вер. 2010 р.

За цим репозиторієм стоїть організація — спільна, підзвітна опіка, здатна пережити будь-якого окремого мейнтейнера.

Пакетні екосистеми

РеєстрПакетВерсіяЗавантажень / місВерсіїОстання публікація
PyPIsvtkвказує на інший репозиторій — не оцінюється0.2.0-21437 днів тому
PyPIsv_utilsвказує на інший репозиторій — не оцінюється0.6.1-52424 дні тому

Метрики за категоріями

Життєздатність

Чи живий проєкт — чи пишеться код і чи виходять релізи?

86Відмінний · 21% загального індексу
Як обчислюється оцінка
36/36Свіжість push — останній push 0 дн. тому
18/36Ритм комітів — 26/52 тижнів із комітами
17.8/18Обсяг комітів — 94 комітів за останній рік
10/10OpenSSF Scorecard: Maintained — 13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
Використані вхідні дані
commits_last_year94
human_commit_share1
days_since_last_push0
active_weeks_last_year26
Як обчислюється оцінка
27/27Випускає релізи — опубліковано 79 релізів
36/36Свіжість релізів — останній реліз 17 дн. тому
19.8/27Ритм релізів — реліз кожні ~77 дн.
0/10OpenSSF Scorecard: Signed-Releases — немає даних
Використані вхідні дані
releases_count79
latest_release_tagv1.1.1
releases_from_tagsні
days_since_latest_release17
mean_days_between_releases77
Виключено з оцінювання (немає даних або не застосовно): OpenSSF Scorecard: Signed-Releases. Залишкові ваги перенормовано.

Спільнота та впровадження

Чи має проєкт користувачів, завантаження, увагу та влаштовані умови для контриб’юторів?

71Добрий · 17% загального індексу
Як обчислюється оцінка
37.5/60Зірки — 206 зірок
15.9/25Форки — 81 форків
5.6/15Спостерігачі — 11 спостерігачів
Використані вхідні дані
forks81
stars206
watchers11
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history
Як обчислюється оцінка
22.5/22.5README
22.5/22.5Ліцензія — визнана ліцензія (BSD-3-Clause)
18/18Настанови CONTRIBUTING
13.5/13.5Кодекс поведінки
0/7.2Шаблон issue
0/6.3Шаблон PR
Використані вхідні дані
has_readmeтак
has_licenseтак
readme_badges
has_contributingтак
has_issue_templateні
has_code_of_conductтак
readme_badge_services
has_pull_request_templateні

Сталість та врядування

Чи переживе проєкт своїх людей — бас-фактор, реактивність, хто за ним стоїть і як супроводжуються пакети?

76Добрий · 23% загального індексу
Як обчислюється оцінка
36/54Бас-фактор — на 3 контриб’ютор(ів) припадає половина всіх комітів
16.8/22.5Розподіл комітів — головний контриб’ютор — автор 25% комітів
13.5/13.5Широта контриб’юторів — 20 контриб’юторів
10/10OpenSSF Scorecard: Contributors — project has 8 contributing companies or organizations
Використані вхідні дані
bus_factor3
contributors_sampled20
top_contributor_share0,254
Як обчислюється оцінка
26.8/42Вирішення issue — закрито 64% issue
26.2/30Прийняття PR — злито 560/641 вирішених PR
0/13Newcomer PR acceptance — за 30 дн. не вирішено жодного PR від новачка
12/15OpenSSF Scorecard: Code-Review — Found 25/30 approved changesets -- score normalized to 8
Використані вхідні дані
merged_prs560
open_issues99
closed_issues174
prs_merged_7d
prs_decided_7d
prs_merged_30d
prs_decided_30d
issue_closed_ratio0,637
closed_unmerged_prs81
first_time_authors_30d
first_time_prs_merged_30d
first_time_prs_decided_30d
Виключено з оцінювання (немає даних або не застосовно): newcomer_pr_acceptance. Залишкові ваги перенормовано.
Як обчислюється оцінка
30/30Підтримка власника — у власності організації
0/20Верифікований домен
22.4/25Охоплення власника — 1 290 підписників у broadinstitute
25/25Послужний список — 1 515 публічних репозиторіїв, вік облікового запису ~15 р.
Використані вхідні дані
followers1 290
owner_typeOrganization
is_verified
owner_loginbroadinstitute
public_repos1 515
account_age_days5 804

Інженерна якість

Чи наявні базові інженерні практики та документація?

76Добрий · 19% загального індексу
Як обчислюється оцінка
24/24Процеси CI — 5 процес(ів) CI
24/24Наявні тести
16/16Конфігурація лінтера — tox.ini
0/9.6Pre-commit-хуки
0/6.4.editorconfig
20/20OpenSSF Scorecard: CI-Tests — 25 out of 25 merged PRs checked by a CI test -- score normalized to 10
Використані вхідні дані
has_ciтак
has_testsтак
has_editorconfigні
has_linter_configтак
has_precommit_configні
Як обчислюється оцінка
30/30README
0/25Каталог документації
15/15Сайт документації / домашня сторінка — https://broadinstitute.github.io/gatk-sv/
10/10Опис репозиторію
10/10Теми — 4 тем
0/10Wiki
Використані вхідні дані
topicsgenomics, structural-variants, structural-variation, bioinformatics
has_wikiні
homepagehttps://broadinstitute.github.io/gatk-sv/
has_readmeтак
has_docs_dirні
has_descriptionтак

Безпека

Чи міцні видимі практики безпеки й ланцюга постачання, без непослабленої пов’язаності з юрисдикціями високого ризику?

65Добрий · 16% загального індексу

Стан безпеки

56Помірний
Як обчислюється оцінка
6.8/7.5Binary-Artifacts — binaries present in source code
0/7.5Branch-Protection — немає даних
2.5/2.5CI-Tests — 25 out of 25 merged PRs checked by a CI test -- score normalized to 10
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
6/7.5Code-Review — Found 25/30 approved changesets -- score normalized to 8
2.5/2.5Contributors — project has 8 contributing companies or organizations
10/10Dangerous-Workflow — no dangerous workflow patterns detected
0/7.5Dependency-Update-Tool — no update tool detected
0/5Fuzzing — project is not fuzzed
2.5/2.5Ліцензія — license file detected
7.5/7.5Maintained — 13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
0/5Packaging — немає даних
0/5Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
2.5/5SAST — SAST tool is not run on all commits -- score normalized to 5
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — немає даних
0/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
7.5/7.5Vulnerabilities — 0 existing vulnerabilities detected
Використані вхідні дані
sourceopenssf_scorecard
checks_evaluated15
scorecard_versionv5.5.0
checks_inconclusive3
scorecard_aggregate5,6
Виключено з оцінювання (немає даних або не застосовно): branch_protection, packaging, signed_releases. Залишкові ваги перенормовано.
Як обчислюється оцінка
35/35Прямі залежності без відомих сповіщень — жодна пряма залежність не має відомих сповіщень
25/25Непрямі залежності без відомих сповіщень — жодна непряма залежність не має відомих сповіщень
0/40Немає задавнених сповіщень — жодне сповіщення не має дати публікації
Використані вхідні дані
sourceosv
advisories0
affected_packages0
assessed_packages12
unassessed_packages0
affected_by_severitynone
direct_affected_packages0
Виключено з оцінювання (немає даних або не застосовно): Немає задавнених сповіщень. Залишкові ваги перенормовано. Звірено з runtime-замиканням залежностей pypi:svtk@0.2.0 — тим, що тягне за собою встановлення опублікованого пакета, — 12 пакетів. Досяжність не аналізується.

Готовність до ШІ

Наскільки репозиторій оснащений для розробки та супроводу за участі ШІ-агентів? Має свідомо малу вагу (4%): агентний інструментарій — реальний сигнал супроводу, але репозиторій без нього все одно може отримати 100/100.

42Слабкий · 4% загального індексу
Як обчислюється оцінка
0/45Інструкції для агентів — немає CLAUDE.md / AGENTS.md / правил редактора
0/15Машиночитана документація (llms.txt)
37.3/40Читабельна історія комітів — намір зазначено у 70 з 100 людських комітів (структурований заголовок або пояснювальний текст)
Використані вхідні дані
has_llms_txtні
legible_history_share0,7
agent_instruction_files
agent_instruction_max_bytes
Як обчислюється оцінка
0/18Розгортання однією командою
22/22Автоматизовані тести
11/11Конфігурація лінтера / форматера — tox.ini
0/11Статична перевірка типів
10/10Відтворюване середовище — Dockerfile
0/10Підтверджена практика роботи з агентами — серед останніх 100 комітів немає створених агентом
0/8Автоматизоване супроводження — автоматичних оновлень залежностей не виявлено
0/10OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
Використані вхідні дані
has_nixні
has_testsтак
lockfiles
has_dockerfileтак
typed_languageні
bootstrap_files
has_devcontainerні
has_linter_configтак
typecheck_configs
agent_commit_share0
toolchain_manifests
dependency_bot_commit_share0
Як обчислюється оцінка
0/45Типізований код — Python без конфігурації перевірки типів
54.4/55Керовані розміри файлів — 3/255 файлів вихідного коду понад 60 КБ
Використані вхідні дані
primary_languagePython
largest_source_bytes120 131
source_files_sampled255
oversized_source_files3
Як обчислюється оцінка
0/40Схема API (OpenAPI/GraphQL/proto)
0/20Сервер MCP
40/40Придатні до запуску приклади — notebooks
Використані вхідні дані
example_dirsnotebooks
has_mcp_signalні
api_schema_files

Ключові факти

206зірок GitHub
20контриб'юторів
94комітів за останні 12 місяців
0днів від останнього пушу
79релізів
3бас-фактор
99відкритих issue
npmпакетних екосистем

Попередження щодо збору даних

  • Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
  • Could not fetch pypi package 'svqc' from its registry
  • pypi package 'svtk' points at a different repository (https://github.com/simleek/displayarray); excluded from ecosystem scoring
  • Could not fetch pypi package 'svtest' from its registry
  • pypi package 'sv_utils' points at a different repository (https://github.com/friend1ws/sv_utils); excluded from ecosystem scoring

Докладніше

Історія зірок і форків 0 ★ / 81 ⇿
0Зірки
81Форки
76Релізи

Коли додано кожну зірку й форк — зібрано з GitHub і згруповано за днями. Кумулятивне зростання розміщено просто над денними додаваннями, з яких воно складається, тож їх видно одне проти одного: рівномірне органічне накопичення виглядає зовсім інакше, ніж різкий короткочасний сплеск. Там, де цю різницю можна виміряти, її подано як автентичність росту.

0204060808032020-072023-072026-07
Мажорні 0Мінорні 0Патчі 5

Кожна точка охоплює 6 днів.

OpenSSF Scorecard 5.6 / 10
5.6сукупно

Незалежна, не прив'язана до інструментів оцінка безпеки від відкритого проєкту OpenSSF Scorecard. Кожна перевірка винагороджує практику безпеки, а не інструмент конкретного постачальника. Перевірки, які Scorecard не зміг визначити, позначено н/д і виключено з оцінки безпеки (вони ніколи не зараховуються як нуль).Scorecard v5.5.0 · 2026-07-31 20:24 UTC

9Binary-Artifactsbinaries present in source code
н/дBranch-Protectioninternal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md
10CI-Tests25 out of 25 merged PRs checked by a CI test -- score normalized to 10
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
8Code-ReviewFound 25/30 approved changesets -- score normalized to 8
10Contributorsproject has 8 contributing companies or organizations
10Dangerous-Workflowno dangerous workflow patterns detected
0Dependency-Update-Toolno update tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
10Maintained13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
н/дPackagingpackaging workflow not detected
0Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 0
5SASTSAST tool is not run on all commits -- score normalized to 5
0Security-Policysecurity policy file not detected
н/дSigned-Releasesno releases found
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
10Vulnerabilities0 existing vulnerabilities detected
Прямі залежності 9
РеєстрПакетОбмеження версіїМаніфест
npm@docusaurus/core^3.10.1website/package.json
npm@docusaurus/plugin-google-gtag^3.10.1website/package.json
npm@docusaurus/preset-classic^3.10.1website/package.json
npm@docusaurus/theme-mermaid^3.10.1website/package.json
npm@mdx-js/react^3.0.0website/package.json
npmclsx^2.0.0website/package.json
npmprism-react-renderer^2.3.0website/package.json
npmreact^18.0.0website/package.json
npmreact-dom^18.0.0website/package.json
Усі залежності 38

Повний розв'язаний набір залежностей із графа залежностей GitHub: 9 прямих і 29 непрямих (транзитивних) пакетів. Транзитивне замикання є повним, коли в репозиторії закомічено lockfile.

РеєстрПакетВерсіяЗв'язок
npm@docusaurus/core^3.10.1пряма
npm@docusaurus/plugin-google-gtag^3.10.1пряма
npm@docusaurus/preset-classic^3.10.1пряма
npm@docusaurus/theme-mermaid^3.10.1пряма
npm@mdx-js/react^3.0.0пряма
npmclsx^2.0.0пряма
npmprism-react-renderer^2.3.0пряма
npmreact^18.0.0пряма
npmreact-dom^18.0.0пряма
npm@docusaurus/module-type-aliases^3.10.1непряма
npm@docusaurus/types^3.10.1непряма
PyPIargparseнепряма
PyPIclickнепряма
PyPIcythonнепряма
PyPIdillнепряма
PyPIintervaltreeнепряма
PyPIjsonschemaнепряма
PyPImatplotlibнепряма
PyPImultiprocessing-loggingнепряма
PyPInatsortнепряма
PyPInoseнепряма
PyPInumpyнепряма
PyPIopenpyxlнепряма
PyPIpandasнепряма
PyPIplotlyнепряма
PyPIpsutilнепряма
PyPIpybedtoolsнепряма
PyPIpymplerнепряма
PyPIpysamнепряма
PyPIrequestsнепряма
PyPIscipyнепряма
PyPIseabornнепряма
PyPIsetuptoolsнепряма
PyPIstatsmodelsнепряма
PyPItqdmнепряма
PyPIurllib3непряма
PyPIwheelнепряма
PyPIxlsxwriterнепряма
Сповіщення про залежності 0

Встановлення pypi:svtk@0.2.0 тягне 12 пакетів, прямих і транзитивних: 0 мають відомі сповіщення, з них 0 — прямі залежності.

Жодне відоме сповіщення не стосується оцінених залежностей.

Сповіщення означає, що версія, записана в графі залежностей, потрапляє в уражений діапазон. Досяжність не аналізується, а граф містить піниї розробки й тестування — знахідка може стосуватися інструментів, а не поставленого коду.

Звіт у форматі JSON машиночитний
{
  "data": {
    "repo": {
      "topics": [
        "genomics",
        "structural-variants",
        "structural-variation",
        "bioinformatics"
      ],
      "is_fork": false,
      "size_kb": 163376,
      "has_wiki": false,
      "homepage": "https://broadinstitute.github.io/gatk-sv/",
      "languages": {
        "R": 716788,
        "CSS": 4550,
        "WDL": 1282298,
        "Java": 65062,
        "Shell": 632788,
        "Cython": 1238,
        "Python": 1881457,
        "Dockerfile": 60441,
        "JavaScript": 14252,
        "Go Template": 229656,
        "Jupyter Notebook": 199591
      },
      "pushed_at": "2026-07-31T19:28:45Z",
      "created_at": "2020-06-18T20:52:07Z",
      "owner_type": "Organization",
      "updated_at": "2026-07-30T17:08:27Z",
      "description": "A structural variation pipeline for short-read sequencing",
      "is_archived": false,
      "is_disabled": false,
      "license_spdx": "BSD-3-Clause",
      "default_branch": "main",
      "license_spdx_raw": "BSD-3-Clause",
      "primary_language": "Python",
      "significant_languages": [
        "Python",
        "WDL",
        "R",
        "Shell"
      ]
    },
    "owner": {
      "blog": "http://www.broadinstitute.org/",
      "name": "Broad Institute",
      "type": "Organization",
      "login": "broadinstitute",
      "company": null,
      "location": "Cambridge, MA",
      "followers": 1290,
      "avatar_url": "https://avatars.githubusercontent.com/u/393552?v=4",
      "created_at": "2010-09-09T16:37:46Z",
      "is_verified": null,
      "public_repos": 1515,
      "account_age_days": 5804
    },
    "license": {
      "state": "standard",
      "spdx_id": "BSD-3-Clause",
      "raw_spdx": "BSD-3-Clause",
      "file_present": true,
      "scorecard_found": true,
      "profile_has_license": true
    },
    "activity": {
      "releases": [
        {
          "tag": "v1.1.1",
          "kind": "patch",
          "published_at": "2026-07-13T21:54:04Z"
        },
        {
          "tag": "v1.1",
          "kind": "other",
          "published_at": "2025-09-04T15:52:32Z"
        },
        {
          "tag": "v1.0.5",
          "kind": "patch",
          "published_at": "2025-07-01T16:22:51Z"
        },
        {
          "tag": "v1.0.4",
          "kind": "patch",
          "published_at": "2025-05-22T17:40:39Z"
        },
        {
          "tag": "v1.0.3",
          "kind": "patch",
          "published_at": "2025-04-14T19:55:56Z"
        },
        {
          "tag": "v1.0.2-hotfix",
          "kind": "prerelease",
          "published_at": "2025-02-10T17:26:57Z"
        },
        {
          "tag": "v1.0.2",
          "kind": "patch",
          "published_at": "2025-02-06T16:40:19Z"
        },
        {
          "tag": "v1.0.1",
          "kind": "patch",
          "published_at": "2024-11-21T20:45:06Z"
        },
        {
          "tag": "v1.0",
          "kind": "other",
          "published_at": "2024-10-31T15:59:49Z"
        },
        {
          "tag": "v0.29-beta",
          "kind": "other",
          "published_at": "2024-08-19T16:57:14Z"
        },
        {
          "tag": "v0.28.5-beta",
          "kind": "prerelease",
          "published_at": "2024-05-02T19:31:09Z"
        },
        {
          "tag": "v0.28.4-beta",
          "kind": "prerelease",
          "published_at": "2023-10-23T19:28:00Z"
        },
        {
          "tag": "v0.28.3-beta",
          "kind": "prerelease",
          "published_at": "2023-08-21T19:15:38Z"
        },
        {
          "tag": "v0.28.2-beta",
          "kind": "prerelease",
          "published_at": "2023-08-08T17:50:53Z"
        },
        {
          "tag": "v0.28.1-beta",
          "kind": "prerelease",
          "published_at": "2023-06-28T17:03:53Z"
        },
        {
          "tag": "v0.28-beta",
          "kind": "other",
          "published_at": "2023-06-27T16:20:27Z"
        },
        {
          "tag": "v0.27.3-beta",
          "kind": "prerelease",
          "published_at": "2023-05-08T18:29:50Z"
        },
        {
          "tag": "v0.27.2-beta",
          "kind": "prerelease",
          "published_at": "2023-05-01T18:25:12Z"
        },
        {
          "tag": "v0.27.1-beta",
          "kind": "prerelease",
          "published_at": "2023-03-16T17:06:29Z"
        },
        {
          "tag": "v0.27-beta",
          "kind": "other",
          "published_at": "2023-03-15T17:38:48Z"
        },
        {
          "tag": "v0.26.10-beta",
          "kind": "prerelease",
          "published_at": "2023-03-02T02:53:33Z"
        },
        {
          "tag": "v0.26.9-beta",
          "kind": "prerelease",
          "published_at": "2023-02-02T20:33:54Z"
        },
        {
          "tag": "v0.26.8-beta",
          "kind": "prerelease",
          "published_at": "2023-01-05T16:00:58Z"
        },
        {
          "tag": "v0.26.7-beta",
          "kind": "prerelease",
          "published_at": "2022-12-19T15:55:09Z"
        },
        {
          "tag": "v0.26.6-beta",
          "kind": "prerelease",
          "published_at": "2022-12-15T17:44:15Z"
        },
        {
          "tag": "v0.26.5-beta",
          "kind": "prerelease",
          "published_at": "2022-11-30T20:30:33Z"
        },
        {
          "tag": "v0.26.4-beta",
          "kind": "prerelease",
          "published_at": "2022-10-12T15:45:53Z"
        },
        {
          "tag": "v0.26.3-beta",
          "kind": "prerelease",
          "published_at": "2022-09-27T23:09:01Z"
        },
        {
          "tag": "v0.26.2-beta",
          "kind": "prerelease",
          "published_at": "2022-09-22T16:59:17Z"
        },
        {
          "tag": "v0.26.1-beta",
          "kind": "prerelease",
          "published_at": "2022-09-19T17:07:22Z"
        },
        {
          "tag": "v0.26-beta",
          "kind": "other",
          "published_at": "2022-09-16T14:40:01Z"
        },
        {
          "tag": "v0.25.1-beta",
          "kind": "prerelease",
          "published_at": "2022-09-08T16:11:41Z"
        },
        {
          "tag": "v0.25-beta",
          "kind": "other",
          "published_at": "2022-08-26T19:07:00Z"
        },
        {
          "tag": "v0.24.3-beta",
          "kind": "prerelease",
          "published_at": "2022-08-22T19:41:11Z"
        },
        {
          "tag": "v0.24.2-beta",
          "kind": "prerelease",
          "published_at": "2022-08-18T18:48:26Z"
        },
        {
          "tag": "v0.24.1-beta",
          "kind": "prerelease",
          "published_at": "2022-08-10T16:50:05Z"
        },
        {
          "tag": "v0.24-beta",
          "kind": "other",
          "published_at": "2022-07-28T15:49:27Z"
        },
        {
          "tag": "v0.23-beta",
          "kind": "other",
          "published_at": "2022-05-04T19:30:12Z"
        },
        {
          "tag": "v0.22-beta",
          "kind": "other",
          "published_at": "2022-04-29T20:37:23Z"
        },
        {
          "tag": "v0.9.1-beta-hotfix2",
          "kind": "prerelease",
          "published_at": "2022-04-14T18:48:44Z"
        },
        {
          "tag": "v0.21-beta",
          "kind": "other",
          "published_at": "2022-04-13T18:38:42Z"
        },
        {
          "tag": "v0.20.2-beta",
          "kind": "prerelease",
          "published_at": "2022-02-11T16:49:38Z"
        },
        {
          "tag": "v0.20.1-beta",
          "kind": "prerelease",
          "published_at": "2022-02-03T19:40:21Z"
        },
        {
          "tag": "v0.20-beta",
          "kind": "other",
          "published_at": "2022-02-03T19:38:09Z"
        },
        {
          "tag": "v0.19.4-beta",
          "kind": "prerelease",
          "published_at": "2022-01-14T18:04:18Z"
        },
        {
          "tag": "v0.19.3-beta",
          "kind": "prerelease",
          "published_at": "2021-12-21T20:17:01Z"
        },
        {
          "tag": "v0.19.2-beta",
          "kind": "prerelease",
          "published_at": "2021-11-29T22:28:17Z"
        },
        {
          "tag": "v0.19.1-beta",
          "kind": "prerelease",
          "published_at": "2021-11-15T23:02:01Z"
        },
        {
          "tag": "v0.19-beta",
          "kind": "other",
          "published_at": "2021-11-15T22:15:32Z"
        },
        {
          "tag": "v0.18.5-beta",
          "kind": "prerelease",
          "published_at": "2021-10-29T17:00:51Z"
        },
        {
          "tag": "v0.18.4-beta",
          "kind": "prerelease",
          "published_at": "2021-10-19T22:57:18Z"
        },
        {
          "tag": "v0.18.3-beta",
          "kind": "prerelease",
          "published_at": "2021-10-18T21:01:00Z"
        },
        {
          "tag": "v0.18.2-beta",
          "kind": "prerelease",
          "published_at": "2021-09-28T15:35:05Z"
        },
        {
          "tag": "v0.18.1-beta",
          "kind": "prerelease",
          "published_at": "2021-09-17T16:33:25Z"
        },
        {
          "tag": "v0.18-beta",
          "kind": "other",
          "published_at": "2021-09-14T20:52:14Z"
        },
        {
          "tag": "v0.17.4-beta",
          "kind": "prerelease",
          "published_at": "2021-09-03T22:08:59Z"
        },
        {
          "tag": "v0.17.3-beta",
          "kind": "prerelease",
          "published_at": "2021-09-03T18:48:02Z"
        },
        {
          "tag": "v0.17.2-beta",
          "kind": "prerelease",
          "published_at": "2021-08-30T19:21:44Z"
        },
        {
          "tag": "v0.17.1-beta",
          "kind": "prerelease",
          "published_at": "2021-08-16T20:28:27Z"
        },
        {
          "tag": "v0.17-beta",
          "kind": "other",
          "published_at": "2021-08-16T19:34:23Z"
        },
        {
          "tag": "v0.16-beta",
          "kind": "other",
          "published_at": "2021-07-27T05:53:10Z"
        },
        {
          "tag": "v0.15.1-beta",
          "kind": "prerelease",
          "published_at": "2021-06-28T14:31:19Z"
        },
        {
          "tag": "v0.15-beta-hotfix",
          "kind": "other",
          "published_at": "2021-06-15T21:42:06Z"
        },
        {
          "tag": "v0.15-beta",
          "kind": "other",
          "published_at": "2021-06-15T18:42:49Z"
        },
        {
          "tag": "v0.14.3-beta",
          "kind": "prerelease",
          "published_at": "2021-05-18T16:36:48Z"
        },
        {
          "tag": "v0.14.2-beta",
          "kind": "prerelease",
          "published_at": "2021-05-14T16:58:52Z"
        },
        {
          "tag": "v0.14.1-beta",
          "kind": "prerelease",
          "published_at": "2021-05-07T20:03:17Z"
        },
        {
          "tag": "v0.14-beta",
          "kind": "other",
          "published_at": "2021-04-20T17:19:14Z"
        },
        {
          "tag": "v0.13.1-beta",
          "kind": "prerelease",
          "published_at": "2021-03-18T21:06:41Z"
        },
        {
          "tag": "v0.13-beta",
          "kind": "other",
          "published_at": "2021-03-02T21:48:10Z"
        },
        {
          "tag": "v0.12-beta",
          "kind": "other",
          "published_at": "2021-02-02T19:40:26Z"
        },
        {
          "tag": "v0.11-beta",
          "kind": "other",
          "published_at": "2020-11-20T21:07:04Z"
        },
        {
          "tag": "v0.9.1-beta-hotfix",
          "kind": "prerelease",
          "published_at": "2020-10-16T15:52:53Z"
        },
        {
          "tag": "v0.10-beta",
          "kind": "other",
          "published_at": "2020-10-16T13:08:43Z"
        },
        {
          "tag": "v0.9.1-beta",
          "kind": "prerelease",
          "published_at": "2020-10-07T19:07:05Z"
        },
        {
          "tag": "v0.9-beta",
          "kind": "other",
          "published_at": "2020-09-14T19:40:00Z"
        },
        {
          "tag": "v0.8.3-beta",
          "kind": "prerelease",
          "published_at": "2020-07-10T15:42:42Z"
        },
        {
          "tag": "v0.8.2-beta",
          "kind": "prerelease",
          "published_at": "2020-07-01T19:03:54Z"
        },
        {
          "tag": "v0.8.1-beta",
          "kind": "prerelease",
          "published_at": "2020-06-30T15:02:32Z"
        }
      ],
      "recent_commits": [
        {
          "oid": "0ccbe08ec7f90cdc8ff5bc81749ec7245c48bf8b",
          "body": null,
          "is_bot": false,
          "headline": "Add SV-Shell docs. (#951)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-07-30T17:05:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c67283d4039f23d496901fe7de0cd027e1102a9b",
          "body": null,
          "is_bot": false,
          "headline": "update license with current year (#944)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2026-07-07T17:40:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "84573c4fe99565e63fefa603c4b5715ea6ce26ca",
          "body": null,
          "is_bot": false,
          "headline": "Add DRAGEN SVs to SV-Shell  (#939)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-06-10T19:52:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0fa5f602339ffe12dadf0495ebdd2700df1fa819",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 24f0fd08",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2026-06-02T16:49:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "24f0fd08a57521c1412cc631fb1fb41903cb46a6",
          "body": null,
          "is_bot": false,
          "headline": "Add STRipy to joint calling (#938)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2026-06-02T16:40:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b61d309109b1b8ce428019db64a9c7443e04064c",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 0639be96",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2026-05-30T13:56:22Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0639be96051665eb059e12a3ad7729396a70a548",
          "body": null,
          "is_bot": false,
          "headline": "Fix stale docker builds (#940)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2026-05-30T11:23:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "51e1cd231ebcbfaebbf8d35e0ae040fee8f555a4",
          "body": null,
          "is_bot": false,
          "headline": "Update python version in pytest action (#929)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-05-19T15:04:30Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2d44e3775026fd608f0d9628f34a468d1b7dbb88",
          "body": null,
          "is_bot": false,
          "headline": "Update Docusarus version & dependencies (#941)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-05-18T22:18:15Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a992b6e5832dafa9cbc723b1196bc5f367a19b38",
          "body": "… (#859)",
          "is_bot": false,
          "headline": "Remove outdated code and documentation related to evidence assessment…",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2026-05-15T19:08:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b44a111f0a1e5b09e08a14e297546ea93bcddc06",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 3be4e152",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2026-05-15T18:20:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "74cb7f14da2e32eebb0bb4130990cf2affd4271b",
          "body": null,
          "is_bot": false,
          "headline": "SV-Shell WDL  (#933)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-05-14T15:31:23Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3be4e15227b1bb450db9038189808382cfebe250",
          "body": null,
          "is_bot": false,
          "headline": "Fix Stripy VCF sample ID (#937)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2026-05-13T22:22:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7eb2af1feea9f81a390caff211f6832c6e7f7ac5",
          "body": null,
          "is_bot": false,
          "headline": "input template updates to accommodate scoregenotypes (#930)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2026-04-01T18:38:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "767780624ac0f97224b959f45b42ebcf53b95ece",
          "body": null,
          "is_bot": false,
          "headline": "Ensure logging to both stdout & stderr in sv-shell (#932)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-03-27T14:59:06Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a12d65c43ea8c2463aa02daa95f340eb01901fe6",
          "body": null,
          "is_bot": false,
          "headline": "Remove working directories after task completion  (#926)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-03-11T18:51:16Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "64798a758fa5d17266c99cdb95c55dadeb973bb6",
          "body": null,
          "is_bot": false,
          "headline": "Run cnmops on chromosome arms separately  (#925)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-03-11T16:14:42Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "689eb83ed1e2877cd152be613c2e7b5cb280f2f3",
          "body": null,
          "is_bot": false,
          "headline": "Update sv-shell docker. (#923)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-27T17:02:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "256a1c70682a1715a0175a9b47558113c0c8da18",
          "body": null,
          "is_bot": false,
          "headline": "Add a GitHub action to enforce readonly files (#922)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-25T15:12:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5c020b4d9cba01ccc12f9d6acfbe17eea4798aae",
          "body": null,
          "is_bot": false,
          "headline": "Add single-sample pipeline to sv-shell (#887)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-19T20:39:16Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a0cec9288c4992d6a1785f988520709cf4ab5052",
          "body": "…es (#921)",
          "is_bot": false,
          "headline": "Sync sv-shell implementation of `MakeCohortVcf` with recent WDL updat…",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-11T17:04:43Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0c82b2820229069e7aa05c9d6e44bf09e8756b3e",
          "body": null,
          "is_bot": false,
          "headline": "Implement the `GenotypeSVs` task in sv-shell (#920)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-11T17:04:14Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4e0d854c8c527cb5ec8041034c5258ebb136c663",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 797b7604",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2026-02-06T23:27:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "797b760468d9dba80610c51aeaa9b71506363ab6",
          "body": null,
          "is_bot": false,
          "headline": "Migrate genotyping to GATK (#917)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2026-02-06T23:19:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b9b982261ca473a840295173db8851779d9c79c3",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 629c81be",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2026-02-06T21:12:40Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "629c81be2e015be687868e8f8651a0815041c905",
          "body": null,
          "is_bot": false,
          "headline": "Implements the `MakeCohortVcf` workflow in sv-shell (#907)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-06T20:56:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2008dd47bff454152e56148f0f0a58eea683aba0",
          "body": null,
          "is_bot": false,
          "headline": "Update sv_pipeline_docker.yml (#916)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-04T19:20:40Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "82a75e4333e4dc5007ae7c81587ea05f09812d56",
          "body": null,
          "is_bot": false,
          "headline": "Delete inputs/values/dockers_azure.json (#914)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-02-03T23:50:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "10d2d8113616fcb691081d2c61dd22cb1e260586",
          "body": null,
          "is_bot": false,
          "headline": "Migrate CleanVcf into GATK (#912)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2026-02-03T21:44:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3c3e7e622d045502c4eec412061f88ebda4011c8",
          "body": null,
          "is_bot": false,
          "headline": "fix file path for binned CN plots in accordance with #858 (#905)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2026-01-29T22:00:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a1be457d487a8720c13dfad68edcf5d802a77b5a",
          "body": null,
          "is_bot": false,
          "headline": "Replace root with an env variable in sv-shell scripts (#911)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-01-29T18:20:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f793bf81f56d5979f9933eb2d9df556b11a5d5a4",
          "body": "…904)\n\n* Hardcode `noAddress: true` in GatherSampleEvidence & in the workflows it calls.\n\n* Enable noAddress in remaining gse tasks.\n\n* Enable noAddress in exec path of TrainGCNV\n\n* Enable noAddress in exec path of genotype batch\n\n* Revert \"Enable noAddress in exec path of genotype batch\"\n\nThis reverts commit dbdc91fb68c300984f55bda7356b782345baeff5.\n\n* Enable noAddress in exec path of the gather batch evidence workflow.\n\n* test\n\n* undo test\n\n* add noaddress to gcnv case\n\n* test\n\n* undo test",
          "is_bot": false,
          "headline": "Disable using external IP address in workflows with wide scatters  (#…",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-01-29T18:17:50Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "41507c7932e0325abfd28780a531cf0e6c4b7671",
          "body": "Co-authored-by: VJalili <VJalili@users.noreply.github.com>",
          "is_bot": false,
          "headline": "Scaling updates for GatherSampleEvidence (#906)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2026-01-28T21:41:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f601620151930d2bcad3c278add440c52ebf32ec",
          "body": null,
          "is_bot": false,
          "headline": "Add stripy to sv-shell (#909)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-01-28T16:24:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b042fba2bb5a01c586f8ae05f57aaa2963101594",
          "body": null,
          "is_bot": false,
          "headline": "Add the sv-shell equivalent of the single-sample-metrics workflow (#908)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2026-01-22T18:15:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3e01e2445643665e0a8f41d58967dcca1cae64a3",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 5b84101e",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-12-18T20:58:39Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5b84101e9c6ad21ec03dade149e83dcb07de4e96",
          "body": null,
          "is_bot": false,
          "headline": "Implement the refine complex variants workflow in sv-shell (#900)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-12-18T20:22:27Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9d805bcc528194927745fb81333e73c6bad287d9",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by a06f272a",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-12-18T19:38:38Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a06f272aea282608d2e5337856f029175e9fb67b",
          "body": null,
          "is_bot": false,
          "headline": "Trivial change to trigger docker build (#902)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-12-18T19:19:57Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cc7e9115a61786e525cb4751f3e5a6f942e672c1",
          "body": null,
          "is_bot": false,
          "headline": "Revert dockstore and docker configs (#901)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-12-18T17:54:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2d5d8a44802548a184d7e57bcc967d2e611e8349",
          "body": null,
          "is_bot": false,
          "headline": "New GenerateBatchMetrics workflow (#894)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-12-18T16:23:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e6d0be7f2576a9a0c8f5220baa391d8aeea41a2d",
          "body": null,
          "is_bot": false,
          "headline": "Implement genotype complex variants module for sv-shell  (#899)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-12-18T16:21:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "74e180c736ad625609499238ad97b5e49f75ea04",
          "body": null,
          "is_bot": false,
          "headline": "Add the Resolve Complex Variants workflow to SV-Shell (#897)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-12-11T18:02:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b167c03d96cf4538c1ba9bbcee0f23c66968114e",
          "body": null,
          "is_bot": false,
          "headline": "Implement gCNV case mode in sv-shell (#895)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-12-10T17:32:25Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ddba7112c75a0980ca3c88f803710fd03dd78981",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 76795a82",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-11-19T20:39:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "76795a826422293c30bbc265ddbc202802d19777",
          "body": null,
          "is_bot": false,
          "headline": "Implement the ScoreGenotypes workflow in sv-shell",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-19T20:14:46Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "dc8d35ab5833a75b6f0589ffd4baa106ebd463ac",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by fbe6e8b2",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-11-18T17:33:57Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "fbe6e8b2b3e4d429e2147737ee9bea85b54c8b8a",
          "body": "* draft gatk installation in sv-shell docker.\n\n* Enable sv-shell in build_docker.py",
          "is_bot": false,
          "headline": "Update and enable sv-shell Docker image in Docker automation  (#892)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-18T17:08:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "eab3f4de84c1ba7e3a0171bb518895d1137e6898",
          "body": "* Implement the filter genotypes module in sv-shell.\n\n* syntax bug fix.",
          "is_bot": false,
          "headline": "Implement the `FilterGenotypes` module in sv-shell (#891)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-17T19:00:29Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f4bd1f47e228f52354dbc09471130f213313900f",
          "body": "* Fix mermaid diagram & all link to SL description.\n\n* simplify linking to sl description.",
          "is_bot": false,
          "headline": "Fix mermaid diagram & all link to SL description. (#890)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-17T16:02:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b6b7a5d090b063daa07b13fb7fa0c6db69e48ba5",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 99ad3600",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-11-15T19:07:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "99ad3600f8f2b33bca04b5ea28cd93eea666b760",
          "body": null,
          "is_bot": false,
          "headline": "Implement the SV Annotate module in sv-shell  (#886)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-15T18:57:23Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "798fa19b8abd777557983b1ded984586c73290be",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 7b56c3ac",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-11-14T21:32:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7b56c3ac8f67dfab0291545af10679795781d872",
          "body": null,
          "is_bot": false,
          "headline": "Add STRipy to single-sample workflow (#889)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-11-14T21:19:22Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ad280f6e54f224a82cc8ab7e2a1410ecf95e82a5",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 3ce0ddd4",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-11-14T19:55:53Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3ce0ddd4367f4c26d6d33c0f668739b443922109",
          "body": null,
          "is_bot": false,
          "headline": "Modify genotype filtering to ingest cutoffs from a table  (#864)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-11-14T19:22:08Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8d48278c7b8ab01a7e6d7f6464dd87595860832d",
          "body": null,
          "is_bot": false,
          "headline": "Implement sv concordance tool in sv-shell (#885)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-14T17:01:51Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ecdda8a71f2eefbf6f6d683853675f39696a6e30",
          "body": null,
          "is_bot": false,
          "headline": "Add the JoinRawCalls workflow to sv-shell (#884)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-14T17:00:57Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cb89c92a386f9b657ccaac052d33c02ace7a965d",
          "body": "… (#878)\n\n* Make all wd & output dirs created at the root.\n\n* Make all wd & output dirs created at the root.\n\n* Update gather sample evidence interface.\n\n* Make script paths abs.\n\n* Cleanup.",
          "is_bot": false,
          "headline": "Update sv-shell implementation of the Gather Sample Evidence workflow…",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-14T16:59:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ad4144ed197b2f4a7d3d75b26403a02f1482899f",
          "body": null,
          "is_bot": false,
          "headline": "Enable DRAGEN SV in single sample mode (#875)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-11-14T16:45:06Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "bd8d273b9108d461b59f22634da79dd646ccdb91",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 2a5a9471",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-11-14T16:30:10Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2a5a9471187d3e297c772331ea3460ed70751021",
          "body": null,
          "is_bot": false,
          "headline": "Annotate retrotransposon deletions with a filter tag (#862)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-11-14T16:21:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f4dc9099e1f1c269fa9e67c9d89fa513c673c3d7",
          "body": null,
          "is_bot": false,
          "headline": "Update evidence qc (#888)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-14T15:40:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ecc525989e071a29334d252714d292ce5a558fd7",
          "body": null,
          "is_bot": false,
          "headline": "Remove/update references to MELT (#857)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2025-11-05T20:09:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5a0cd76c4b0228dfde6a1f4c34d3b83335c7bbe5",
          "body": null,
          "is_bot": false,
          "headline": "Add combine batches. (#879)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-04T20:47:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e3cda0b49feae28caddde239218e89a910be9705",
          "body": "…858)",
          "is_bot": false,
          "headline": "analysis vs filtered histograms; put ploidy data in EvQc directory (#…",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2025-11-04T20:10:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "de3cd3c7a1b6bfdb8d66c73e5754f1b5fea68af9",
          "body": "* Draft cluster batch\n\n* Draft cluster PESR\n\n* read contigs.\n\n* Add SV cluster.\n\n* check in\n\n* bug fix\n\n* Add concat vcfs task.\n\n* checkin\n\n* checkin\n\n* checkin\n\n* checkin clustering\n\n* Add exclude interval by interval overlap task.\n\n* Add GatkToSvtkVcf.\n\n* Implement concat vcfs & output section in cluster depth.\n\n* draft cluster batch\n\n* Update cluster batch.",
          "is_bot": false,
          "headline": "Implement cluster batch in sv-shell  (#872)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-04T18:59:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d0d347d3934a323239ea5f4b39cbedabc46be9ce",
          "body": null,
          "is_bot": false,
          "headline": "DeWDLize modules under GatherBatchEvidence (#830)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-11-04T18:21:25Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f0e2da1bc5ac7848afdf3f32a1d61fce9b48c7c8",
          "body": "…877)",
          "is_bot": false,
          "headline": "add gnomad v4 benchmarking set to resources json and input configs (#…",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2025-11-04T18:12:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7ad73f9f66f5f758ff69462a75fa6d865d3d40a6",
          "body": null,
          "is_bot": false,
          "headline": "Update README.md (#871)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-10-23T18:12:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1991c2cdd81274005fabbb60fafb50097d36081c",
          "body": null,
          "is_bot": false,
          "headline": "Add Google analytics (#876)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-10-22T15:41:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ffad8f67ff75a2e071eaeb4b2f4f31f6cec1c9d7",
          "body": null,
          "is_bot": false,
          "headline": "Fix single-sample stratification config in Cromwell test json (#874)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-10-16T18:56:51Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b5d5049c1327464056e27123442e44c2948c8bda",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 483973d6",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-10-02T20:12:39Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "483973d6db3a8a9ba8fa72c5756a8ab53e7877f4",
          "body": "This PR includes code to refactor VCFs passed through GATK-SV to align it to Pysam's upgraded versions, which do not allow variants to have an END position that is less than its start position. As it stands, VCFs in GATK-SV only use the correct END format starting from the outputs of 13-ResolveCompl\n[…]\n position on the second chromosome, whereas the END field is set to pos. All downstream scripts that consume such VCFs are made to interpret BNDs with appropriate logic based on this updated END2 tag.",
          "is_bot": false,
          "headline": "Update representation of BNDs to be Pysam compatible (#835)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-10-02T19:23:53Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "5af2592e20a8fdcc7fe39d1bea4770b533fdc6b0",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 631368eb",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-09-04T15:43:39Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4fdac8f1da961efc14afee5d028f9ed9788c1fef",
          "body": null,
          "is_bot": false,
          "headline": "Handle zero-length arrays in JoinRawCalls (#865)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2025-09-04T15:15:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e2e78dfb1fb7b436fa4652346ade6e5a5fac2b70",
          "body": "* Update gatk commit.\n\n* Temp test gatk in docker.\n\n* Undo temp test gatk in docker.\n\n* Implement make_bincov_matrix.sh.\n\n* Improve & cleanup make_bincov_matrix.sh.\n\n* Add a sample input JSON for make_bincov_matrix.sh.\n\n* Write outputs to a json file.\n\n* Add an option to make_bincov_matrix to take a\n[…]\nmove blank space\n\n* Clean up & bugfix.\n\n* Clean up.\n\n* Remove inputs not currently needed.\n\n* We discussed to keep detailed logging & not include this option for simplicity.\n\n* Remove unused variable.",
          "is_bot": false,
          "headline": "Implement a bash version of the Evidence QC workflow (#855)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-09-03T19:01:13Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "77e84b755f2845026aa1dfb366454c997015a137",
          "body": null,
          "is_bot": false,
          "headline": "Undo dockstore sync of GenotypeComplexVariants",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-09-03T18:27:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "631368ebc9ce2b55bda12c5aa22fa3e8da90ab31",
          "body": "…ersed deletions (#850)\n\nThis PR is intended to enable passing in a custom breakpoint cutoff for dispersed duplication detection for complex events in GATK-SV. It sets this cutoff as 5000 by default, as opposed to 1000000 in the existing implementation.",
          "is_bot": false,
          "headline": "Enable passing a threshold to govern the window for detection of disp…",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-09-03T01:55:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "074f24b7591ba97982a60eea9a89984d163f92a4",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by f091af0b",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-09-02T19:55:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f091af0be6836446a9118f5db7cc3de9bde44fa6",
          "body": "* Bug fix median coverage\n\n* temp add branch for dockstore synch.\n\n* Remove branch from dockstore sync",
          "is_bot": false,
          "headline": "Bug fix missing sample ID in median coverage (#863)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-09-02T19:25:17Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f8939d8c280d8b17189102ea14e709735c595227",
          "body": null,
          "is_bot": false,
          "headline": "Plot SV counts for all VCFs in FilterBatchSites (#860)",
          "author_name": "epiercehoffman",
          "author_login": "epiercehoffman",
          "committed_at": "2025-09-02T18:08:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6328e8628be9f1812b5074c1980e41cb709eacc9",
          "body": null,
          "is_bot": false,
          "headline": "Fix code path in EvidenceQc when run_ploidy is false (#854)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-09-02T14:13:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4063060f795e69c1660d9eec713528cd54fac95b",
          "body": "* Disable sv-shell and scramble dockers.\n\n* Set cran repo for the rBLAST package.\n\n* undo sv-shell and scramble disabling.\n\n* disable SV shell and scramble docker images.",
          "is_bot": false,
          "headline": "Disable sv-shell and scramble dockers. (#861)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-08-29T19:24:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d7a0c36ad9c57c844e41d8ddefbd0ebd7d7d57cc",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 697baf80",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-08-15T15:19:30Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2e312b085a4bbfb514ba1aad4dde02c6b1a6d5b7",
          "body": "* Add the de novo pipeline to Dockstore.\n\n* Log stdout and stderr to separate files for each task & record their ET.\n\n* Bug fix input arg assignment.\n\n* Improve logging and recording stderr.\n\n* skip scramble if manta was skipped.\n\n* Bug fix incorrect use of backticks.\n\n* Improve argset portability.\n\n* log xtrace in terminal & stdout logs file.",
          "is_bot": false,
          "headline": "Log stdout and stderr of tasks in `sv_shell` (#843)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-08-15T15:01:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "697baf809a2b7008f84f21d490b31ddf2f5017ad",
          "body": null,
          "is_bot": false,
          "headline": "Update reference genome in depth plots",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-08-15T14:41:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d6ab6e618a9c0a6666affc9e8873dfa4b444fa96",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 2cee07b8",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-08-14T16:37:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2cee07b89b53530c3c35780671ffe608eb12593c",
          "body": null,
          "is_bot": false,
          "headline": "Refactor manta-vcf arg to input-vcf to match recent refactors. (#853)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-08-14T16:05:49Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "25d8034f099c2bccea85e5c09f9331618a80e377",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by c4f44ead",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-08-11T15:10:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c4f44eadf7991dbed4a10e08cd449410dd0a10b3",
          "body": "* Initial commit\n\n* Modified dockstore sync to use correct branch name\n\n* Added dragen-sv params to cohort mode json templates\n\n* Resolved linting errors\n\n* Modified name of json param to pass womtool evaluation test\n\n* Removed dragen-cnv standardizer\n\n* Initial set of responses to PR comments\n\n* Re\n[…]\n\n* Modified argument to use -h rather than -z, which had conflict\n\n* Changed argument name for incorrect input\n\n* Updated param to -q\n\n---------\n\nCo-authored-by: Mark Walker <markw@broadinstitute.org>",
          "is_bot": false,
          "headline": "Enable DRAGEN-SV as a caller in cohort mode (#803)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-08-11T14:36:44Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "e0f0ce96342649386ca9a5b66cce2d6b1b4f3c1e",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 23d17304",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-08-04T16:21:50Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "23d17304dc6d6f01c7780e8efdc024ad67ef4ebd",
          "body": null,
          "is_bot": false,
          "headline": "Single-sample pipeline update (#842)",
          "author_name": "Mark Walker",
          "author_login": "mwalker174",
          "committed_at": "2025-08-04T15:54:08Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "93ae61349b4ee6690ff204b458c45778f30cce91",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 9e614379",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-08-01T14:50:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9e614379fe356fa4ada128bd851dc60f9231d23a",
          "body": "…nceQc outputs (#814)\n\n* Integrated CN denoising script\n\n* Added variant counts by chr/svtype to evidenceqc table\n\n* Added EvidenceQC changes to dockstore\n\n* Reorganized qc table script for logical comprehension\n\n* Resolved flake8 linting issues\n\n* Updated to remove duplicates for pivot operation\n\n*\n[…]\ns to QC notebook\n\n* Reduced image dimensions by ~25% and resolution by ~50% - should result in ~35% of original file size\n\n* Use original image size but just reduce resolution\n\n* Remove dockstore sync",
          "is_bot": false,
          "headline": "Add denoised copy number plots and stratified variant counts to Evide…",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-07-31T22:34:02Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "f1f2fccd4d26c9c6ace4a5bc47778d26ab531ad5",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by 9d3e7872",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-07-30T18:24:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9d3e787223d8d58a1e8fbdfcabf446c390ccd76f",
          "body": "* Add the de novo pipeline to Dockstore.\n\n* Enable collect PE/SR by default.",
          "is_bot": false,
          "headline": "Enable collect PE/SR by default on sv-shell (#846)",
          "author_name": "Vahid",
          "author_login": "VJalili",
          "committed_at": "2025-07-30T18:03:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9483326cdf09ca98cd7e8bfa6401fb6c399f83de",
          "body": null,
          "is_bot": false,
          "headline": "Update docker images list, triggered by f71901e9",
          "author_name": "gatk-sv-bot",
          "author_login": "gatk-sv-bot",
          "committed_at": "2025-07-28T16:04:56Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f71901e983e72ef91b063186dfd7807bb1dd961c",
          "body": "* Initial commit - excluded from gCNV training\n\n* corrected syntactical errors\n\n* Created test changes to RD R script\n\n* Satisfied WDL syntax constraints\n\n* Rolled back changes to use filtered_vcfs array\n\n* Removed runtime attribute\n\n* Integrated changes to FilterBatchSites\n\n* Resolve python linting\n[…]\ndate website/docs/modules/generate_batch_metrics.md\n\nCo-authored-by: Mark Walker <markw@broadinstitute.org>\n\n* Removed dockstore sync\n\n---------\n\nCo-authored-by: Mark Walker <markw@broadinstitute.org>",
          "is_bot": false,
          "headline": "Filter outlier samples in TrainGCNV and GenerateBatchMetrics (#717)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-07-28T15:32:39Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "7ae35b417968a982f503f061f922575fdb5ec03e",
          "body": "* Initial commit\n\n* Updated WDL to reflect tool version in latest GATK docker version\n\n* Updated comment regarding clustering params\n\n* Initial commit\n\n* Updated to use more interpretable commands\n\n* Renamed param - was using mark's naming originally\n\n* Resolved syntax errors\n\n* Remove dockstore sync",
          "is_bot": false,
          "headline": "Update SVConcordance.wdl to enable stratified matching (#844)",
          "author_name": "Karan Jaisingh",
          "author_login": "kjaisingh",
          "committed_at": "2025-07-25T21:17:42Z",
          "body_truncated": false,
          "is_coding_agent": false
        }
      ],
      "releases_count": 79,
      "commits_last_year": 94,
      "latest_release_at": "2026-07-13T21:54:04Z",
      "latest_release_tag": "v1.1.1",
      "releases_from_tags": false,
      "days_since_last_push": 0,
      "active_weeks_last_year": 26,
      "days_since_latest_release": 17,
      "mean_days_between_releases": 77
    },
    "community": {
      "has_readme": true,
      "has_license": true,
      "has_description": true,
      "has_contributing": true,
      "health_percentage": 75,
      "has_issue_template": false,
      "has_code_of_conduct": true,
      "has_pull_request_template": false
    },
    "ecosystem": {
      "packages": [
        {
          "name": "svtk",
          "exists": true,
          "license": "MIT",
          "keywords": [],
          "ecosystem": "pypi",
          "matches_repo": false,
          "registry_url": "https://pypi.org/project/svtk/",
          "is_deprecated": false,
          "latest_version": "0.2.0",
          "repository_url": "https://github.com/simleek/displayarray",
          "versions_count": 2,
          "total_downloads": null,
          "dependents_count": null,
          "deprecation_note": null,
          "maintainers_count": null,
          "monthly_downloads": null,
          "first_published_at": "2019-09-09T01:39:33.450926Z",
          "latest_published_at": "2022-08-23T22:35:36.032196Z",
          "latest_version_yanked": null,
          "days_since_latest_publish": 1437
        },
        {
          "name": "sv_utils",
          "exists": true,
          "license": "GPLv3",
          "keywords": [
            "Development Status :: 4 - Beta",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
            "Operating System :: Unix",
            "Programming Language :: Python :: 2.7",
            "Programming Language :: Python :: 3.6",
            "Programming Language :: Python :: 3.7",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
          ],
          "ecosystem": "pypi",
          "matches_repo": false,
          "registry_url": "https://pypi.org/project/sv_utils/",
          "is_deprecated": false,
          "latest_version": "0.6.1",
          "repository_url": "https://github.com/friend1ws/sv_utils",
          "versions_count": 5,
          "total_downloads": null,
          "dependents_count": null,
          "deprecation_note": null,
          "maintainers_count": null,
          "monthly_downloads": null,
          "first_published_at": "2018-01-11T14:36:46.114770Z",
          "latest_published_at": "2019-12-11T05:51:44.247273Z",
          "latest_version_yanked": null,
          "days_since_latest_publish": 2424
        }
      ]
    },
    "popularity": {
      "forks": 81,
      "stars": 206,
      "watchers": 11,
      "fork_history": {
        "days": [
          {
            "date": "2020-07-03",
            "count": 1
          },
          {
            "date": "2020-07-13",
            "count": 1
          },
          {
            "date": "2020-09-07",
            "count": 1
          },
          {
            "date": "2020-09-22",
            "count": 1
          },
          {
            "date": "2020-10-08",
            "count": 1
          },
          {
            "date": "2020-11-18",
            "count": 1
          },
          {
            "date": "2020-12-17",
            "count": 1
          },
          {
            "date": "2020-12-21",
            "count": 1
          },
          {
            "date": "2021-01-18",
            "count": 1
          },
          {
            "date": "2021-02-15",
            "count": 1
          },
          {
            "date": "2021-02-16",
            "count": 1
          },
          {
            "date": "2021-04-20",
            "count": 1
          },
          {
            "date": "2021-04-22",
            "count": 1
          },
          {
            "date": "2021-04-24",
            "count": 1
          },
          {
            "date": "2021-04-26",
            "count": 1
          },
          {
            "date": "2021-05-25",
            "count": 1
          },
          {
            "date": "2021-06-10",
            "count": 1
          },
          {
            "date": "2021-07-07",
            "count": 1
          },
          {
            "date": "2021-07-09",
            "count": 1
          },
          {
            "date": "2021-08-07",
            "count": 1
          },
          {
            "date": "2021-09-10",
            "count": 1
          },
          {
            "date": "2021-10-08",
            "count": 1
          },
          {
            "date": "2021-10-14",
            "count": 1
          },
          {
            "date": "2021-11-10",
            "count": 1
          },
          {
            "date": "2021-11-15",
            "count": 1
          },
          {
            "date": "2021-12-01",
            "count": 1
          },
          {
            "date": "2021-12-29",
            "count": 1
          },
          {
            "date": "2022-01-02",
            "count": 1
          },
          {
            "date": "2022-01-05",
            "count": 2
          },
          {
            "date": "2022-01-07",
            "count": 1
          },
          {
            "date": "2022-01-10",
            "count": 1
          },
          {
            "date": "2022-02-09",
            "count": 1
          },
          {
            "date": "2022-03-01",
            "count": 1
          },
          {
            "date": "2022-03-03",
            "count": 1
          },
          {
            "date": "2022-04-14",
            "count": 1
          },
          {
            "date": "2022-04-25",
            "count": 2
          },
          {
            "date": "2022-04-30",
            "count": 1
          },
          {
            "date": "2022-05-18",
            "count": 1
          },
          {
            "date": "2022-05-19",
            "count": 1
          },
          {
            "date": "2022-05-25",
            "count": 1
          },
          {
            "date": "2022-07-19",
            "count": 1
          },
          {
            "date": "2022-08-17",
            "count": 1
          },
          {
            "date": "2022-09-30",
            "count": 1
          },
          {
            "date": "2022-11-02",
            "count": 2
          },
          {
            "date": "2022-11-21",
            "count": 1
          },
          {
            "date": "2022-11-22",
            "count": 1
          },
          {
            "date": "2023-01-03",
            "count": 1
          },
          {
            "date": "2023-03-02",
            "count": 1
          },
          {
            "date": "2023-04-18",
            "count": 1
          },
          {
            "date": "2023-04-24",
            "count": 1
          },
          {
            "date": "2023-05-30",
            "count": 1
          },
          {
            "date": "2023-09-06",
            "count": 1
          },
          {
            "date": "2023-10-10",
            "count": 1
          },
          {
            "date": "2023-10-22",
            "count": 1
          },
          {
            "date": "2023-11-09",
            "count": 1
          },
          {
            "date": "2023-12-12",
            "count": 1
          },
          {
            "date": "2023-12-13",
            "count": 1
          },
          {
            "date": "2024-01-08",
            "count": 1
          },
          {
            "date": "2024-02-12",
            "count": 1
          },
          {
            "date": "2024-02-17",
            "count": 1
          },
          {
            "date": "2024-05-28",
            "count": 1
          },
          {
            "date": "2024-12-09",
            "count": 1
          },
          {
            "date": "2025-01-11",
            "count": 1
          },
          {
            "date": "2025-02-11",
            "count": 1
          },
          {
            "date": "2025-02-26",
            "count": 1
          },
          {
            "date": "2025-02-27",
            "count": 1
          },
          {
            "date": "2025-05-20",
            "count": 2
          },
          {
            "date": "2025-08-05",
            "count": 1
          },
          {
            "date": "2025-08-22",
            "count": 1
          },
          {
            "date": "2025-12-22",
            "count": 1
          },
          {
            "date": "2026-04-09",
            "count": 1
          },
          {
            "date": "2026-06-09",
            "count": 1
          },
          {
            "date": "2026-06-14",
            "count": 1
          },
          {
            "date": "2026-06-29",
            "count": 1
          },
          {
            "date": "2026-07-01",
            "count": 1
          },
          {
            "date": "2026-07-07",
            "count": 1
          }
        ],
        "complete": true,
        "collected": 80,
        "total_forks": 81
      },
      "star_history": null,
      "open_issues_and_prs": 131
    },
    "ai_readiness": {
      "has_nix": false,
      "example_dirs": [
        "notebooks"
      ],
      "has_llms_txt": false,
      "has_dockerfile": true,
      "has_mcp_signal": false,
      "bootstrap_files": [],
      "api_schema_files": [],
      "has_devcontainer": false,
      "typecheck_configs": [],
      "toolchain_manifests": [],
      "largest_source_bytes": 120131,
      "source_files_sampled": 255,
      "oversized_source_files": 3,
      "agent_instruction_files": [],
      "agent_instruction_max_bytes": null
    },
    "dependencies": {
      "manifests": [
        "website/package.json"
      ],
      "advisories": {
        "error": null,
        "scope": "published_package",
        "source": "osv",
        "findings": [],
        "collected": true,
        "malicious": [],
        "truncated": false,
        "by_severity": {},
        "advisory_count": 0,
        "affected_count": 0,
        "assessed_count": 12,
        "malicious_count": 0,
        "assessed_package": "pypi:svtk@0.2.0",
        "unassessed_count": 0,
        "direct_affected_count": 0
      },
      "ecosystems": [
        "npm"
      ],
      "dependencies": [
        {
          "name": "@docusaurus/core",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^3.10.1"
        },
        {
          "name": "@docusaurus/plugin-google-gtag",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^3.10.1"
        },
        {
          "name": "@docusaurus/preset-classic",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^3.10.1"
        },
        {
          "name": "@docusaurus/theme-mermaid",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^3.10.1"
        },
        {
          "name": "@mdx-js/react",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^3.0.0"
        },
        {
          "name": "clsx",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^2.0.0"
        },
        {
          "name": "prism-react-renderer",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^2.3.0"
        },
        {
          "name": "react",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^18.0.0"
        },
        {
          "name": "react-dom",
          "manifest": "website/package.json",
          "ecosystem": "npm",
          "version_constraint": "^18.0.0"
        }
      ],
      "all_dependencies": {
        "error": null,
        "source": "github-sbom",
        "packages": [
          {
            "name": "@docusaurus/core",
            "direct": true,
            "version": "^3.10.1",
            "ecosystem": "npm"
          },
          {
            "name": "@docusaurus/plugin-google-gtag",
            "direct": true,
            "version": "^3.10.1",
            "ecosystem": "npm"
          },
          {
            "name": "@docusaurus/preset-classic",
            "direct": true,
            "version": "^3.10.1",
            "ecosystem": "npm"
          },
          {
            "name": "@docusaurus/theme-mermaid",
            "direct": true,
            "version": "^3.10.1",
            "ecosystem": "npm"
          },
          {
            "name": "@mdx-js/react",
            "direct": true,
            "version": "^3.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "clsx",
            "direct": true,
            "version": "^2.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "prism-react-renderer",
            "direct": true,
            "version": "^2.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "react",
            "direct": true,
            "version": "^18.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "react-dom",
            "direct": true,
            "version": "^18.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "@docusaurus/module-type-aliases",
            "direct": false,
            "version": "^3.10.1",
            "ecosystem": "npm"
          },
          {
            "name": "@docusaurus/types",
            "direct": false,
            "version": "^3.10.1",
            "ecosystem": "npm"
          },
          {
            "name": "argparse",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "click",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "cython",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "dill",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "intervaltree",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "jsonschema",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "matplotlib",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "multiprocessing-logging",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "natsort",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "nose",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "numpy",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "openpyxl",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pandas",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "plotly",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "psutil",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pybedtools",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pympler",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pysam",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "requests",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "scipy",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "seaborn",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "setuptools",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "statsmodels",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "tqdm",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "urllib3",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "wheel",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "xlsxwriter",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          }
        ],
        "collected": true,
        "truncated": false,
        "total_count": 38,
        "direct_count": 9,
        "indirect_count": 29
      }
    },
    "maintainership": {
      "issues": {
        "open_prs": 32,
        "merged_prs": 560,
        "open_issues": 99,
        "closed_ratio": 0.637,
        "closed_issues": 174,
        "closed_unmerged_prs": 81
      },
      "bus_factor": 3,
      "bot_contributors": 0,
      "top_contributors": [
        {
          "type": "User",
          "login": "VJalili",
          "commits": 170,
          "avatar_url": "https://avatars.githubusercontent.com/u/9027482?v=4"
        },
        {
          "type": "User",
          "login": "epiercehoffman",
          "commits": 133,
          "avatar_url": "https://avatars.githubusercontent.com/u/13224570?v=4"
        },
        {
          "type": "User",
          "login": "gatk-sv-bot",
          "commits": 109,
          "avatar_url": "https://avatars.githubusercontent.com/u/101641599?v=4"
        },
        {
          "type": "User",
          "login": "mwalker174",
          "commits": 107,
          "avatar_url": "https://avatars.githubusercontent.com/u/5686877?v=4"
        },
        {
          "type": "User",
          "login": "kjaisingh",
          "commits": 36,
          "avatar_url": "https://avatars.githubusercontent.com/u/31686667?v=4"
        },
        {
          "type": "User",
          "login": "cwhelan",
          "commits": 33,
          "avatar_url": "https://avatars.githubusercontent.com/u/709477?v=4"
        },
        {
          "type": "User",
          "login": "TedBrookings",
          "commits": 18,
          "avatar_url": "https://avatars.githubusercontent.com/u/6463752?v=4"
        },
        {
          "type": "User",
          "login": "kirtanav98",
          "commits": 13,
          "avatar_url": "https://avatars.githubusercontent.com/u/123595850?v=4"
        },
        {
          "type": "User",
          "login": "tedsharpe",
          "commits": 10,
          "avatar_url": "https://avatars.githubusercontent.com/u/9284156?v=4"
        },
        {
          "type": "User",
          "login": "RCollins13",
          "commits": 10,
          "avatar_url": "https://avatars.githubusercontent.com/u/7913924?v=4"
        }
      ],
      "contributors_sampled": 20,
      "top_contributor_share": 0.254
    },
    "quality_signals": {
      "has_ci": true,
      "has_tests": true,
      "ci_workflows": [
        "docs.yml",
        "pytest.yaml",
        "readonly_check.yaml",
        "sv_pipeline_docker.yml",
        "testwdls.yaml"
      ],
      "has_docs_dir": false,
      "linter_configs": [
        "tox.ini"
      ],
      "has_editorconfig": false,
      "has_linter_config": true,
      "has_precommit_config": false
    },
    "security_signals": {
      "lockfiles": [],
      "scorecard": {
        "checks": [
          {
            "name": "Binary-Artifacts",
            "score": 9,
            "reason": "binaries present in source code",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
          },
          {
            "name": "Branch-Protection",
            "score": null,
            "reason": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
          },
          {
            "name": "CI-Tests",
            "score": 10,
            "reason": "25 out of 25 merged PRs checked by a CI test -- score normalized to 10",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
          },
          {
            "name": "CII-Best-Practices",
            "score": 0,
            "reason": "no effort to earn an OpenSSF best practices badge detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
          },
          {
            "name": "Code-Review",
            "score": 8,
            "reason": "Found 25/30 approved changesets -- score normalized to 8",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
          },
          {
            "name": "Contributors",
            "score": 10,
            "reason": "project has 8 contributing companies or organizations",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
          },
          {
            "name": "Dangerous-Workflow",
            "score": 10,
            "reason": "no dangerous workflow patterns detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
          },
          {
            "name": "Dependency-Update-Tool",
            "score": 0,
            "reason": "no update tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
          },
          {
            "name": "Fuzzing",
            "score": 0,
            "reason": "project is not fuzzed",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
          },
          {
            "name": "License",
            "score": 10,
            "reason": "license file detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
          },
          {
            "name": "Maintained",
            "score": 10,
            "reason": "13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
          },
          {
            "name": "Packaging",
            "score": null,
            "reason": "packaging workflow not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
          },
          {
            "name": "Pinned-Dependencies",
            "score": 0,
            "reason": "dependency not pinned by hash detected -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
          },
          {
            "name": "SAST",
            "score": 5,
            "reason": "SAST tool is not run on all commits -- score normalized to 5",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
          },
          {
            "name": "Security-Policy",
            "score": 0,
            "reason": "security policy file not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
          },
          {
            "name": "Signed-Releases",
            "score": null,
            "reason": "no releases found",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
          },
          {
            "name": "Token-Permissions",
            "score": 0,
            "reason": "detected GitHub workflow tokens with excessive permissions",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
          },
          {
            "name": "Vulnerabilities",
            "score": 10,
            "reason": "0 existing vulnerabilities detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
          }
        ],
        "commit": "0ccbe08ec7f90cdc8ff5bc81749ec7245c48bf8b",
        "ran_at": "2026-07-31T20:24:47Z",
        "aggregate_score": 5.6,
        "scorecard_version": "v5.5.0"
      },
      "has_codeql_workflow": false,
      "has_security_policy": false,
      "has_dependabot_config": false
    },
    "contribution_flow": {
      "collected": true,
      "ci_last_run_at": "2026-07-30T17:05:46Z",
      "oldest_open_prs": [
        {
          "number": 364,
          "created_at": "2022-06-29T16:00:17Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 416,
          "created_at": "2022-09-23T00:34:32Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 435,
          "created_at": "2022-10-05T16:37:34Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 446,
          "created_at": "2022-10-12T15:35:51Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 496,
          "created_at": "2023-02-11T13:20:02Z",
          "last_comment_at": "2023-02-16T19:26:20Z",
          "last_comment_author": "VJalili"
        },
        {
          "number": 533,
          "created_at": "2023-05-11T20:30:50Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 617,
          "created_at": "2023-11-09T20:13:22Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 633,
          "created_at": "2024-01-31T15:26:13Z",
          "last_comment_at": "2024-04-29T15:16:41Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 644,
          "created_at": "2024-02-12T21:07:27Z",
          "last_comment_at": "2024-02-14T16:52:32Z",
          "last_comment_author": "VJalili"
        },
        {
          "number": 653,
          "created_at": "2024-03-08T18:54:28Z",
          "last_comment_at": "2024-04-29T16:46:02Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 654,
          "created_at": "2024-03-11T18:16:53Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 662,
          "created_at": "2024-04-02T17:12:00Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 668,
          "created_at": "2024-04-25T19:55:57Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 675,
          "created_at": "2024-05-13T16:43:25Z",
          "last_comment_at": "2024-09-11T16:55:41Z",
          "last_comment_author": "VJalili"
        },
        {
          "number": 765,
          "created_at": "2025-01-06T19:03:21Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 804,
          "created_at": "2025-04-25T20:23:39Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 806,
          "created_at": "2025-05-01T16:15:37Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 810,
          "created_at": "2025-05-09T17:22:34Z",
          "last_comment_at": "2025-05-27T15:41:11Z",
          "last_comment_author": "epiercehoffman"
        },
        {
          "number": 816,
          "created_at": "2025-05-27T15:36:16Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 821,
          "created_at": "2025-06-09T05:52:24Z",
          "last_comment_at": "2025-06-10T20:31:52Z",
          "last_comment_author": "epiercehoffman"
        }
      ],
      "last_merged_pr_at": "2026-07-30T17:05:08Z",
      "ci_last_conclusion": "SUCCESS",
      "oldest_open_issues": [
        {
          "number": 16,
          "created_at": "2020-07-01T16:44:42Z",
          "last_comment_at": "2022-05-13T17:52:35Z",
          "last_comment_author": "ekarlins"
        },
        {
          "number": 49,
          "created_at": "2020-09-10T14:24:14Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 52,
          "created_at": "2020-09-10T15:58:09Z",
          "last_comment_at": "2021-11-16T21:45:14Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 81,
          "created_at": "2020-11-16T17:53:18Z",
          "last_comment_at": "2021-11-16T21:21:00Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 103,
          "created_at": "2021-01-28T18:43:25Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 161,
          "created_at": "2021-05-06T13:34:24Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 166,
          "created_at": "2021-05-12T19:06:36Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 181,
          "created_at": "2021-06-10T15:45:41Z",
          "last_comment_at": "2021-11-16T21:27:01Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 201,
          "created_at": "2021-07-20T23:51:32Z",
          "last_comment_at": "2025-07-26T19:06:34Z",
          "last_comment_author": "kjaisingh"
        },
        {
          "number": 223,
          "created_at": "2021-09-03T16:15:41Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 234,
          "created_at": "2021-09-17T18:02:51Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 265,
          "created_at": "2021-11-22T15:56:36Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 269,
          "created_at": "2021-12-01T17:34:49Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 277,
          "created_at": "2022-01-04T21:05:39Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 310,
          "created_at": "2022-03-14T16:35:53Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 327,
          "created_at": "2022-04-01T14:59:28Z",
          "last_comment_at": "2024-06-12T16:40:32Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 336,
          "created_at": "2022-04-25T16:41:35Z",
          "last_comment_at": "2022-08-26T14:53:58Z",
          "last_comment_author": "mwalker174"
        },
        {
          "number": 355,
          "created_at": "2022-06-10T13:21:15Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 360,
          "created_at": "2022-06-21T16:03:29Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 363,
          "created_at": "2022-06-29T15:03:35Z",
          "last_comment_at": "2023-04-27T15:45:14Z",
          "last_comment_author": "alsanju"
        }
      ]
    }
  },
  "config": {
    "disabled_metrics": [],
    "disabled_categories": [],
    "disabled_components": {}
  },
  "source": {
    "url": "https://github.com/broadinstitute/gatk-sv",
    "host": "github.com",
    "name": "gatk-sv",
    "owner": "broadinstitute"
  },
  "metrics": {
    "overall": {
      "key": "overall",
      "band": "excellent",
      "name": "Overall health",
      "note": "The weighted overall 74 is calibrated to 88 on the published index scale (record calibration 2026-08-02).",
      "notes": [
        {
          "code": "overall_calibration",
          "params": {
            "raw": 74,
            "calibrated": 88,
            "calibration": "2026-08-02"
          }
        }
      ],
      "value": 88,
      "inputs": {
        "security": 65,
        "vitality": 86,
        "community": 71,
        "governance": 76,
        "calibration": "2026-08-02",
        "engineering": 76,
        "ai_readiness": 42,
        "weighted_overall_raw": 74
      },
      "components": []
    },
    "categories": [
      {
        "key": "vitality",
        "band": "excellent",
        "name": "Vitality",
        "value": 86,
        "weight": 0.21,
        "metrics": [
          {
            "key": "development_activity",
            "band": "excellent",
            "name": "Development activity",
            "note": null,
            "notes": [],
            "value": 82,
            "inputs": {
              "commits_last_year": 94,
              "human_commit_share": 1,
              "days_since_last_push": 0,
              "active_weeks_last_year": 26
            },
            "components": [
              {
                "key": "push_recency",
                "name": "Push recency",
                "detail": "last push 0 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "push_recency",
                    "params": {
                      "days": 0
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_cadence",
                "name": "Commit cadence",
                "detail": "26/52 weeks with commits",
                "points": 18,
                "status": "partial",
                "details": [
                  {
                    "code": "commit_cadence_weeks",
                    "params": {
                      "weeks": 26
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_volume",
                "name": "Commit volume",
                "detail": "94 commits in the last year",
                "points": 17.8,
                "status": "partial",
                "details": [
                  {
                    "code": "commits_last_year",
                    "params": {
                      "count": 94
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "openssf_scorecard_maintained",
                "name": "OpenSSF Scorecard: Maintained",
                "detail": "13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "release_discipline",
            "band": "excellent",
            "name": "Release discipline",
            "note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "openssf_scorecard_signed_releases"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 92,
            "inputs": {
              "releases_count": 79,
              "latest_release_tag": "v1.1.1",
              "releases_from_tags": false,
              "days_since_latest_release": 17,
              "mean_days_between_releases": 77
            },
            "components": [
              {
                "key": "ships_releases",
                "name": "Ships releases",
                "detail": "79 releases published",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "releases_published",
                    "params": {
                      "count": 79
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "release_recency",
                "name": "Release recency",
                "detail": "latest release 17 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "release_recency",
                    "params": {
                      "days": 17
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "release_cadence",
                "name": "Release cadence",
                "detail": "a release every ~77 days",
                "points": 19.8,
                "status": "partial",
                "details": [
                  {
                    "code": "release_cadence",
                    "params": {
                      "gap": 77
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "openssf_scorecard_signed_releases",
                "name": "OpenSSF Scorecard: Signed-Releases",
                "detail": "no releases found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 10
              }
            ]
          },
          {
            "key": "abandonment",
            "band": "exceptional",
            "name": "Abandonment",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "cap": null,
              "state": "maintained",
              "guards": [],
              "signals": [],
              "red_flag": false,
              "multiplier_pct": 100,
              "declared_reason": null,
              "unverified_reason": null,
              "unanswered_open_prs": null,
              "unanswered_open_issues": null,
              "days_since_last_merged_pr": null,
              "days_since_last_human_commit": 3,
              "days_since_last_human_commit_is_floor": false
            },
            "components": [
              {
                "key": "project_is_still_maintained",
                "name": "Project is still maintained",
                "detail": "last human commit 3 days ago",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "abandonment_maintained",
                    "params": {
                      "days": 3
                    }
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Is the project alive — is code being written and are releases shipping?"
      },
      {
        "key": "community",
        "band": "good",
        "name": "Community & Adoption",
        "value": 71,
        "weight": 0.17,
        "metrics": [
          {
            "key": "popularity",
            "band": "moderate",
            "name": "Popularity & adoption",
            "note": null,
            "notes": [],
            "value": 59,
            "inputs": {
              "forks": 81,
              "stars": 206,
              "watchers": 11,
              "growth_state": "unverified",
              "growth_factor_pct": 100,
              "growth_unverified_reason": "no_history"
            },
            "components": [
              {
                "key": "stars",
                "name": "Stars",
                "detail": "206 stars",
                "points": 37.5,
                "status": "partial",
                "details": [
                  {
                    "code": "stars",
                    "params": {
                      "count": 206
                    }
                  }
                ],
                "max_points": 60
              },
              {
                "key": "forks",
                "name": "Forks",
                "detail": "81 forks",
                "points": 15.9,
                "status": "partial",
                "details": [
                  {
                    "code": "forks",
                    "params": {
                      "count": 81
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "watchers",
                "name": "Watchers",
                "detail": "11 watchers",
                "points": 5.6,
                "status": "partial",
                "details": [
                  {
                    "code": "watchers",
                    "params": {
                      "count": 11
                    }
                  }
                ],
                "max_points": 15
              }
            ]
          },
          {
            "key": "community_health",
            "band": "excellent",
            "name": "Community health",
            "note": null,
            "notes": [],
            "value": 85,
            "inputs": {
              "has_readme": true,
              "has_license": true,
              "readme_badges": null,
              "has_contributing": true,
              "has_issue_template": false,
              "has_code_of_conduct": true,
              "readme_badge_services": [],
              "has_pull_request_template": false
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 22.5,
                "status": "met",
                "details": [],
                "max_points": 22.5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "recognized license (BSD-3-Clause)",
                "points": 22.5,
                "status": "met",
                "details": [
                  {
                    "code": "license_standard",
                    "params": {}
                  },
                  {
                    "code": "license_spdx",
                    "params": {
                      "spdx": "BSD-3-Clause"
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributing_guide",
                "name": "CONTRIBUTING guide",
                "detail": null,
                "points": 18,
                "status": "met",
                "details": [],
                "max_points": 18
              },
              {
                "key": "code_of_conduct",
                "name": "Code of conduct",
                "detail": null,
                "points": 13.5,
                "status": "met",
                "details": [],
                "max_points": 13.5
              },
              {
                "key": "issue_template",
                "name": "Issue template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.2
              },
              {
                "key": "pr_template",
                "name": "PR template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.3
              }
            ]
          }
        ],
        "description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
      },
      {
        "key": "governance",
        "band": "good",
        "name": "Sustainability & Governance",
        "value": 76,
        "weight": 0.23,
        "metrics": [
          {
            "key": "maintainer_resilience",
            "band": "good",
            "name": "Maintainer resilience (bus factor)",
            "note": null,
            "notes": [],
            "value": 76,
            "inputs": {
              "bus_factor": 3,
              "contributors_sampled": 20,
              "top_contributor_share": 0.254
            },
            "components": [
              {
                "key": "bus_factor",
                "name": "Bus factor",
                "detail": "3 contributor(s) cover half of all commits",
                "points": 36,
                "status": "partial",
                "details": [
                  {
                    "code": "bus_factor",
                    "params": {
                      "count": 3
                    }
                  }
                ],
                "max_points": 54
              },
              {
                "key": "commit_distribution",
                "name": "Commit distribution",
                "detail": "top contributor authored 25% of commits",
                "points": 16.8,
                "status": "partial",
                "details": [
                  {
                    "code": "top_contributor_share",
                    "params": {
                      "share": 25
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributor_breadth",
                "name": "Contributor breadth",
                "detail": "20 contributors",
                "points": 13.5,
                "status": "met",
                "details": [
                  {
                    "code": "contributors_sampled",
                    "params": {
                      "count": 20
                    }
                  }
                ],
                "max_points": 13.5
              },
              {
                "key": "openssf_scorecard_contributors",
                "name": "OpenSSF Scorecard: Contributors",
                "detail": "project has 8 contributing companies or organizations",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "responsiveness",
            "band": "good",
            "name": "Issue & PR responsiveness",
            "note": "Excluded from scoring (no data or not applicable): Newcomer PR acceptance. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "newcomer_pr_acceptance"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 75,
            "inputs": {
              "merged_prs": 560,
              "open_issues": 99,
              "closed_issues": 174,
              "prs_merged_7d": null,
              "prs_decided_7d": null,
              "prs_merged_30d": null,
              "prs_decided_30d": null,
              "issue_closed_ratio": 0.637,
              "closed_unmerged_prs": 81,
              "first_time_authors_30d": null,
              "first_time_prs_merged_30d": null,
              "first_time_prs_decided_30d": null
            },
            "components": [
              {
                "key": "issue_resolution",
                "name": "Issue resolution",
                "detail": "64% of issues closed",
                "points": 26.8,
                "status": "partial",
                "details": [
                  {
                    "code": "issues_closed_share",
                    "params": {
                      "share": 64
                    }
                  }
                ],
                "max_points": 42
              },
              {
                "key": "pr_acceptance",
                "name": "PR acceptance",
                "detail": "560/641 decided PRs merged",
                "points": 26.2,
                "status": "partial",
                "details": [
                  {
                    "code": "decided_prs_merged",
                    "params": {
                      "merged": 560,
                      "decided": 641
                    }
                  }
                ],
                "max_points": 30
              },
              {
                "key": "newcomer_pr_acceptance",
                "name": "Newcomer PR acceptance",
                "detail": "no first-time contributor's PR decided in 30d",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_newcomer_prs",
                    "params": {
                      "days": 30
                    }
                  }
                ],
                "max_points": 13
              },
              {
                "key": "openssf_scorecard_code_review",
                "name": "OpenSSF Scorecard: Code-Review",
                "detail": "Found 25/30 approved changesets -- score normalized to 8",
                "points": 12,
                "status": "partial",
                "details": [],
                "max_points": 15
              }
            ]
          },
          {
            "key": "stewardship",
            "band": "good",
            "name": "Ownership & stewardship",
            "note": null,
            "notes": [],
            "value": 77,
            "inputs": {
              "followers": 1290,
              "owner_type": "Organization",
              "is_verified": null,
              "owner_login": "broadinstitute",
              "public_repos": 1515,
              "account_age_days": 5804
            },
            "components": [
              {
                "key": "ownership_backing",
                "name": "Ownership backing",
                "detail": "organization-owned",
                "points": 30,
                "status": "met",
                "details": [
                  {
                    "code": "owner_organization",
                    "params": {}
                  }
                ],
                "max_points": 30
              },
              {
                "key": "verified_domain",
                "name": "Verified domain",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "owner_reach",
                "name": "Owner reach",
                "detail": "1,290 followers of broadinstitute",
                "points": 22.4,
                "status": "partial",
                "details": [
                  {
                    "code": "owner_followers",
                    "params": {
                      "count": 1290,
                      "login": "broadinstitute"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "track_record",
                "name": "Track record",
                "detail": "1515 public repos, account ~15 yr old",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "public_repos",
                    "params": {
                      "count": 1515
                    }
                  },
                  {
                    "code": "account_age_years",
                    "params": {
                      "years": 15
                    }
                  }
                ],
                "max_points": 25
              }
            ]
          }
        ],
        "description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
      },
      {
        "key": "engineering",
        "band": "good",
        "name": "Engineering Quality",
        "value": 76,
        "weight": 0.19,
        "metrics": [
          {
            "key": "engineering_practices",
            "band": "excellent",
            "name": "Engineering practices",
            "note": null,
            "notes": [],
            "value": 84,
            "inputs": {
              "has_ci": true,
              "has_tests": true,
              "has_editorconfig": false,
              "has_linter_config": true,
              "has_precommit_config": false
            },
            "components": [
              {
                "key": "ci_workflows",
                "name": "CI workflows",
                "detail": "5 workflow(s)",
                "points": 24,
                "status": "met",
                "details": [
                  {
                    "code": "ci_workflows",
                    "params": {
                      "count": 5
                    }
                  }
                ],
                "max_points": 24
              },
              {
                "key": "tests_present",
                "name": "Tests present",
                "detail": null,
                "points": 24,
                "status": "met",
                "details": [],
                "max_points": 24
              },
              {
                "key": "linter_config",
                "name": "Linter config",
                "detail": "tox.ini",
                "points": 16,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "tox.ini"
                    }
                  }
                ],
                "max_points": 16
              },
              {
                "key": "pre_commit_hooks",
                "name": "Pre-commit hooks",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 9.6
              },
              {
                "key": "editorconfig",
                "name": ".editorconfig",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.4
              },
              {
                "key": "openssf_scorecard_ci_tests",
                "name": "OpenSSF Scorecard: CI-Tests",
                "detail": "25 out of 25 merged PRs checked by a CI test -- score normalized to 10",
                "points": 20,
                "status": "met",
                "details": [],
                "max_points": 20
              }
            ]
          },
          {
            "key": "documentation",
            "band": "good",
            "name": "Documentation",
            "note": null,
            "notes": [],
            "value": 65,
            "inputs": {
              "topics": [
                "genomics",
                "structural-variants",
                "structural-variation",
                "bioinformatics"
              ],
              "has_wiki": false,
              "homepage": "https://broadinstitute.github.io/gatk-sv/",
              "has_readme": true,
              "has_docs_dir": false,
              "has_description": true
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 30,
                "status": "met",
                "details": [],
                "max_points": 30
              },
              {
                "key": "documentation_directory",
                "name": "Documentation directory",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 25
              },
              {
                "key": "documentation_homepage_site",
                "name": "Documentation / homepage site",
                "detail": "https://broadinstitute.github.io/gatk-sv/",
                "points": 15,
                "status": "met",
                "details": [],
                "max_points": 15
              },
              {
                "key": "repository_description",
                "name": "Repository description",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "topics",
                "name": "Topics",
                "detail": "4 topics",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "topics_count",
                    "params": {
                      "count": 4
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "wiki",
                "name": "Wiki",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
      },
      {
        "key": "security",
        "band": "good",
        "name": "Security",
        "value": 65,
        "weight": 0.16,
        "metrics": [
          {
            "key": "security_posture",
            "band": "moderate",
            "name": "Security posture",
            "note": "Excluded from scoring (no data or not applicable): Branch-Protection, Packaging, Signed-Releases. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "branch_protection",
                    "packaging",
                    "signed_releases"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 56,
            "inputs": {
              "source": "openssf_scorecard",
              "checks_evaluated": 15,
              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 3,
              "scorecard_aggregate": 5.6
            },
            "components": [
              {
                "key": "binary_artifacts",
                "name": "Binary-Artifacts",
                "detail": "binaries present in source code",
                "points": 6.8,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "ci_tests",
                "name": "CI-Tests",
                "detail": "25 out of 25 merged PRs checked by a CI test -- score normalized to 10",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "code_review",
                "name": "Code-Review",
                "detail": "Found 25/30 approved changesets -- score normalized to 8",
                "points": 6,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 8 contributing companies or organizations",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no dangerous workflow patterns detected",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "no update tool detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "13 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow not detected",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
                "detail": "SAST tool is not run on all commits -- score normalized to 5",
                "points": 2.5,
                "status": "partial",
                "details": [],
                "max_points": 5
              },
              {
                "key": "security_policy",
                "name": "Security-Policy",
                "detail": "security policy file not detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "signed_releases",
                "name": "Signed-Releases",
                "detail": "no releases found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "detected GitHub workflow tokens with excessive permissions",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "0 existing vulnerabilities detected",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              }
            ]
          },
          {
            "key": "dependency_advisories",
            "band": "exceptional",
            "name": "Dependency advisories",
            "note": "Excluded from scoring (no data or not applicable): No advisories left outstanding. Remaining weights renormalized. Matched the pypi:svtk@0.2.0 runtime dependency closure — what installing the published package pulls in — 12 packages. Reachability is not analyzed.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "no_advisories_left_outstanding"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              },
              {
                "code": "advisories_scope_published",
                "params": {
                  "package": "pypi:svtk@0.2.0",
                  "assessed": 12
                }
              },
              {
                "code": "advisories_reachability",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "source": "osv",
              "advisories": 0,
              "affected_packages": 0,
              "assessed_packages": 12,
              "unassessed_packages": 0,
              "affected_by_severity": "none",
              "direct_affected_packages": 0
            },
            "components": [
              {
                "key": "direct_dependencies_free_of_known_advisories",
                "name": "Direct dependencies free of known advisories",
                "detail": "no direct dependency carries a known advisory",
                "points": 35,
                "status": "met",
                "details": [
                  {
                    "code": "no_direct_advisories",
                    "params": {}
                  }
                ],
                "max_points": 35
              },
              {
                "key": "indirect_dependencies_free_of_known_advisories",
                "name": "Indirect dependencies free of known advisories",
                "detail": "no indirect dependency carries a known advisory",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "no_indirect_advisories",
                    "params": {}
                  }
                ],
                "max_points": 25
              },
              {
                "key": "no_advisories_left_outstanding",
                "name": "No advisories left outstanding",
                "detail": "no advisory carries a publication date",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "advisories_no_publication_date",
                    "params": {}
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "malicious_dependencies",
            "band": "exceptional",
            "name": "Malicious dependencies",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "source": "osv",
              "meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
              "packages": [],
              "red_flag": false,
              "assessed_packages": 12,
              "malicious_packages": 0,
              "direct_malicious_packages": 0,
              "withdrawn_malicious_packages": 0,
              "installable_malicious_packages": 0
            },
            "components": [
              {
                "key": "no_dependency_reported_as_a_malicious_package",
                "name": "No dependency reported as a malicious package",
                "detail": "no dependency is reported as a malicious package",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "no_malicious_dependencies",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          },
          {
            "key": "high_risk_jurisdiction_exposure",
            "band": "exceptional",
            "name": "High-Risk Jurisdiction Exposure",
            "note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
            "notes": [
              {
                "code": "jurisdiction_evidence_limits",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "meaning": "self-published location evidence; not nationality or citizenship",
              "red_flag": false,
              "exposures": [],
              "policy_countries": [
                "Russia",
                "Iran",
                "North Korea"
              ],
              "commit_weight_rule": {
                "min_commits": 50,
                "min_commit_share": 0.1
              },
              "review_only_matches": 0,
              "below_threshold_exposures": [],
              "assessed_self_published_locations": 6
            },
            "components": [
              {
                "key": "policy_exposure_multiplier",
                "name": "Policy exposure multiplier",
                "detail": "no confirmed policy-scope location match",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "jurisdiction_no_match",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "weak",
        "name": "AI Readiness",
        "value": 42,
        "weight": 0.04,
        "metrics": [
          {
            "key": "ai_agent_context",
            "band": "weak",
            "name": "Agent context & guidance",
            "note": null,
            "notes": [],
            "value": 37,
            "inputs": {
              "has_llms_txt": false,
              "legible_history_share": 0.7,
              "agent_instruction_files": [],
              "agent_instruction_max_bytes": null
            },
            "components": [
              {
                "key": "agent_instructions",
                "name": "Agent instructions",
                "detail": "no CLAUDE.md / AGENTS.md / editor rules",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_instructions",
                    "params": {}
                  }
                ],
                "max_points": 45
              },
              {
                "key": "machine_readable_docs_llms_txt",
                "name": "Machine-readable docs (llms.txt)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "legible_commit_history",
                "name": "Legible commit history",
                "detail": "70 of 100 human commits state their intent (structured subject or explanatory body)",
                "points": 37.3,
                "status": "partial",
                "details": [
                  {
                    "code": "legible_history",
                    "params": {
                      "legible": 70,
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "ai_verify_loop",
            "band": "weak",
            "name": "Verify loop (build / test / typecheck)",
            "note": null,
            "notes": [],
            "value": 43,
            "inputs": {
              "has_nix": false,
              "has_tests": true,
              "lockfiles": [],
              "has_dockerfile": true,
              "typed_language": false,
              "bootstrap_files": [],
              "has_devcontainer": false,
              "has_linter_config": true,
              "typecheck_configs": [],
              "agent_commit_share": 0,
              "toolchain_manifests": [],
              "dependency_bot_commit_share": 0
            },
            "components": [
              {
                "key": "one_command_bootstrap",
                "name": "One-command bootstrap",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 18
              },
              {
                "key": "automated_tests",
                "name": "Automated tests",
                "detail": null,
                "points": 22,
                "status": "met",
                "details": [],
                "max_points": 22
              },
              {
                "key": "lint_format_config",
                "name": "Lint / format config",
                "detail": "tox.ini",
                "points": 11,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "tox.ini"
                    }
                  }
                ],
                "max_points": 11
              },
              {
                "key": "static_type_checking",
                "name": "Static type checking",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
              },
              {
                "key": "reproducible_environment",
                "name": "Reproducible environment",
                "detail": "Dockerfile",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "Dockerfile"
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "demonstrated_agent_practice",
                "name": "Demonstrated agent practice",
                "detail": "no agent-authored commits among the last 100",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_authored_commits",
                    "params": {
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "automated_maintenance",
                "name": "Automated maintenance",
                "detail": "no automated dependency updates observed",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_dependency_automation",
                    "params": {}
                  }
                ],
                "max_points": 8
              },
              {
                "key": "openssf_scorecard_pinned_dependencies",
                "name": "OpenSSF Scorecard: Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "ai_code_legibility",
            "band": "moderate",
            "name": "Code legibility for models",
            "note": null,
            "notes": [],
            "value": 54,
            "inputs": {
              "primary_language": "Python",
              "largest_source_bytes": 120131,
              "source_files_sampled": 255,
              "oversized_source_files": 3
            },
            "components": [
              {
                "key": "type_checkable_code",
                "name": "Type-checkable code",
                "detail": "Python without a type-check config",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_typecheck_config_language",
                    "params": {
                      "language": "Python"
                    }
                  }
                ],
                "max_points": 45
              },
              {
                "key": "manageable_file_sizes",
                "name": "Manageable file sizes",
                "detail": "3/255 source files over 60KB",
                "points": 54.4,
                "status": "partial",
                "details": [
                  {
                    "code": "oversized_source_files",
                    "params": {
                      "kb": 60,
                      "sampled": 255,
                      "oversized": 3
                    }
                  }
                ],
                "max_points": 55
              }
            ]
          },
          {
            "key": "ai_interfaces",
            "band": "weak",
            "name": "Machine-readable interfaces",
            "note": null,
            "notes": [],
            "value": 40,
            "inputs": {
              "example_dirs": [
                "notebooks"
              ],
              "has_mcp_signal": false,
              "api_schema_files": []
            },
            "components": [
              {
                "key": "api_schema_openapi_graphql_proto",
                "name": "API schema (OpenAPI/GraphQL/proto)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 40
              },
              {
                "key": "mcp_server",
                "name": "MCP server",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "runnable_examples",
                "name": "Runnable examples",
                "detail": "notebooks",
                "points": 40,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "notebooks"
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          }
        ],
        "description": "How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight: agent tooling is a real maintenance signal, but its absence must never gate the top of the scale (calibration saturates at raw 91, so 100/100 remains reachable with AI Readiness at zero)."
      }
    ],
    "classification": {
      "labels": [
        "web-ui"
      ],
      "scores": {
        "web-ui": 4
      },
      "primary": "web-ui",
      "evidence": [
        {
          "tier": "dependencies",
          "label": "web-ui",
          "source": "dep:react-dom",
          "weight": 4
        }
      ],
      "artifacts": [],
      "confidence": "low",
      "host_extension": false,
      "runs_as_process": true,
      "consumed_by_code": false
    },
    "metrics_version": "2.3.1"
  },
  "warnings": [
    "Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token",
    "Could not fetch pypi package 'svqc' from its registry",
    "pypi package 'svtk' points at a different repository (https://github.com/simleek/displayarray); excluded from ecosystem scoring",
    "Could not fetch pypi package 'svtest' from its registry",
    "pypi package 'sv_utils' points at a different repository (https://github.com/friend1ws/sv_utils); excluded from ecosystem scoring"
  ],
  "report_type": "repository",
  "generated_at": "2026-07-31T20:25:13.675172Z",
  "schema_version": "0.27.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/b/broadinstitute/gatk-sv.svg",
  "full_name": "broadinstitute/gatk-sv",
  "license_state": "standard",
  "license_spdx": "BSD-3-Clause"
}

Оцінки — це сигнали, а не гарантії. Вони відображають публічно видимі практики на GitHub — це не аудит коду й не гарантія безпеки.

Відсутні дані виключаються, а ваги перенормовуються — нуль за відсутність ніколи не ставиться. Методологія версіонована й відкрита: метрики v2.3.1, схема v0.27.0 — повна методологія · вікі метрик.

Як окремий результат виглядає на тлі всього реєстру: сукупна статистикаPyPI.