Katalog-Tag

#bioinformatics

Alle Repositories im öffentlichen Register, die dieses Tag tragen — aus ihren GitHub-Topics oder den von ihren Paket-Registries veröffentlichten Schlagwörtern. Die Gesundheit wird nach derselben versionierten Methodik gemessen wie im übrigen Register.

100 Einträge

Getaggt als „bioinformatics“Geordnet nach Gesundheitsindex

PyPI

60MittelGesundheitsindex

Electrostatics/mmcif_pdbx

Yet another version of PDBx/mmCIF Python implementation

Python★ 915. Juli 2026

CC0-1.015. Juli 2026 · Metriken 1.13.0

PyPI · crates.io · npm

60MittelGesundheitsindex

Sigilweaver/OpenTFRaw

Pure-Rust reader for Thermo Fisher .raw mass-spectrometry files, with Python bindings.

Rust★ 12↓ 3.365/Monat15. Juli 2026

Eigene Lizenz15. Juli 2026 · Metriken 1.13.0

PyPI · npm · crates.io

60MittelGesundheitsindex

illumination-k/pubmed-client

Keine Repository-Beschreibung veröffentlicht.

Rust★ 1↓ 1.938/Monat18. Juli 2026

MIT18. Juli 2026 · Metriken 1.13.0

PyPI · Go

60MittelGesundheitsindex

the-omics-os/lobster

The self-evolving agentic framework for bioinformatics

Python★ 4215. Juli 2026

Eigene Lizenz15. Juli 2026 · Metriken 1.13.0

npm · PyPI

59MittelGesundheitsindex

full-spectrum-analytics/dash-seqviz

A dash wrapper of the javascript DNA, RNA and protein sequence viewer

Python · JavaScript★ 1↓ 317/Monat15. Juli 2026

MIT15. Juli 2026 · Metriken 1.13.0

PyPI

59MittelGesundheitsindex

pepkit/pepdbagent

Database for storing sample metadata

Python★ 2↓ 1.314/Monat15. Juli 2026

BSD-2-Clause15. Juli 2026 · Metriken 1.13.0

npm · PyPI

59MittelGesundheitsindex

plotly/dash-bio

Open-source bioinformatics components for Dash

Python · CSS · JavaScript★ 573↓ 566/Monat15. Juli 2026

MIT15. Juli 2026 · Metriken 1.13.0

PyPI · npm

58MittelGesundheitsindex

haqaliz/contig

An agentic bioinformatics analyst: it runs the analysis on your own compute, self-heals failures, verifies the output, and returns a reproducible result.

Python · TypeScript★ 0↓ 0/Monat14. Juli 2026

Apache-2.014. Juli 2026 · Metriken 1.13.0

—

57MittelGesundheitsindex

BIoJulia/BIoStructures.jl

A Julia package to read, write and manipulate macromolecular structures

Julia★ 10517. Juli 2026

Eigene Lizenz17. Juli 2026 · Metriken 1.13.0

—

57MittelGesundheitsindex

brentp/somalier

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

Nim · HTML★ 32921. Juli 2026

MIT21. Juli 2026 · Metriken 1.13.0

crates.io

57MittelGesundheitsindex

haddocking/haddock-restraints

Generate restraints to be used in HADDOCK

Rust★ 6↓ 54/Monat17. Juli 2026

MIT17. Juli 2026 · Metriken 1.13.0

PyPI · crates.io

57MittelGesundheitsindex

hfooladi/pdbrust

A Rust library for parsing PDB (Protein Data Bank) files

Rust★ 20↓ 997/Monat15. Juli 2026

MIT15. Juli 2026 · Metriken 1.13.0

PyPI

57MittelGesundheitsindex

igvteam/igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

Python · HTML★ 435↓ 1.420/Monat23. Juli 2026

MIT23. Juli 2026 · Metriken 1.13.0

crates.io

57MittelGesundheitsindex

stjude-rust-labs/tes

A crate for working with the Task Execution Service (TES) specification.

Rust★ 13↓ 14.7K/Monat23. Juli 2026

Apache-2.023. Juli 2026 · Metriken 1.13.0

PyPI

56MittelGesundheitsindex

DoctorDean/lazarus

An agent that takes a dead research repo and turns it into a callable pipeline component.

Python★ 13↓ 375/Monat17. Juli 2026

MIT17. Juli 2026 · Metriken 1.13.0

PyPI

56MittelGesundheitsindex

PDBeurope/rellig

Identifies relevant ligands in the PDB

Python★ 915. Juli 2026

Apache-2.015. Juli 2026 · Metriken 1.13.0

56MittelGesundheitsindex

TimOthYStIles/poly

A Go package for engineering organisms.

Go★ 73117. Juli 2026

MIT17. Juli 2026 · Metriken 1.13.0

PyPI

56MittelGesundheitsindex

bioexcel/biobb_common

Biobb_common is the base package required to use the biobb packages.

Python★ 0↓ 1.398/Monat17. Juli 2026

Apache-2.017. Juli 2026 · Metriken 1.13.0

PyPI

56MittelGesundheitsindex

elkins-lab/resonance-flow

JAX-native differentiable protein folding framework integrating experimental NMR constraints (RDCs) and biophysical "self-correction." Several Jupyter Notebooks visualize the concepts.

Python★ 117. Juli 2026

MIT17. Juli 2026 · Metriken 1.13.0

PyPI

56MittelGesundheitsindex

intersystems-community/iris-vector-graph

High-performance graph database + vector search powered by InterSystems IRIS

Python★ 1↓ 2.494/Monat19. Juli 2026

Eigene Lizenz19. Juli 2026 · Metriken 1.13.0

PyPI

56MittelGesundheitsindex

jlsteenwyk/orthosnap

a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees

Python★ 31↓ 221/Monat18. Juli 2026

MIT18. Juli 2026 · Metriken 1.13.0

PyPI

55MittelGesundheitsindex

BioPandas/biopandas

Working with molecular structures in pandas DataFrames

Python★ 75621. Juli 2026

BSD-3-Clause21. Juli 2026 · Metriken 1.13.0

npm

54MittelGesundheitsindex

gmod/g2p_mapper

Keine Repository-Beschreibung veröffentlicht.

TypeScript★ 0↓ 6.170/Monat15. Juli 2026

MIT15. Juli 2026 · Metriken 1.13.0

npm

53MittelGesundheitsindex

PDBeurope/mmcif-validator

Real-time VSCode extension and standalone Python script for validating mmCIF/CIF files against the PDBx/mmCIF dictionary or any CIF dictionary.

Python · TypeScript★ 1015. Juli 2026

Keine Lizenz15. Juli 2026 · Metriken 1.13.0

crates.io

53MittelGesundheitsindex

bio-rs/bio-rs

AI-ready biological data I/O, validation, and tokenization engine

Rust · Python★ 315. Juli 2026

Eigene Lizenz15. Juli 2026 · Metriken 1.13.0

PyPI

53MittelGesundheitsindex

electrostatics/apbs

Software for biomolecular electrostatics and solvation calculations

C · Python · MATLAB★ 13417. Juli 2026

Eigene Lizenz17. Juli 2026 · Metriken 1.13.0

PyPI

52MittelGesundheitsindex

elkins-lab/synth-cryo-em

Generate realistic synthetic 3D Cryo-EM densities from structural models for testing algorithms and training ML models.

Python · Jupyter Notebook★ 217. Juli 2026

Keine Lizenz17. Juli 2026 · Metriken 1.13.0

PyPI

52MittelGesundheitsindex

noahhenrikkleinschmidt/biobuild

A fragment-based molecular assembly toolkit

Python★ 5117. Juli 2026

AGPL-3.017. Juli 2026 · Metriken 1.13.0

—

51MittelGesundheitsindex

CDCgov/irma

IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.

Perl · Shell★ 2821. Juli 2026

Apache-2.021. Juli 2026 · Metriken 1.13.0

PyPI

51MittelGesundheitsindex

kmaneesh/biopython-mcp

MCP interface to BioPython

Python★ 2↓ 503/Monat15. Juli 2026

MIT15. Juli 2026 · Metriken 1.13.0