Registro públicoModerado
Informe de salud del softwareesquema 0.12.0 · métricas 1.13.0 · 2026-07-17 21:56 UTC
EBi-Metagenomics / mgnify-pipelines-toolkit
This Python package contains a collection of scripts and tools for including in MGnify pipelines
EBi-Metagenomics/mgnify-pipelines-toolkit tiene un índice de salud de 68 sobre 100, lo que lo sitúa en la banda Moderado. Su puntuación más alta es Vitality (94/100) y la más baja, Community & Adoption (31/100). Se actualizó por última vez hace 4 días. 2 personas concentran la mayor parte del trabajo reciente.
68
global / 100Índice de salud del software
Las métricas se agrupan en categorías ponderadas sobre una escala de 1 a 100. El resultado global parte de su media; cuando la evidencia pública activa la Política de Jurisdicciones de Alto Riesgo, la calificación se ajusta y recibe el límite 49 (En riesgo). Preparación para IA queda fuera.
68
Excelente85-100Ejemplar; cumple prácticamente todos los criterios evaluados
Bueno70-84Saludable; carencias menores
Moderado50-69Aceptable con carencias notables; se recomienda revisión
En riesgo30-49Debilidades significativas; su adopción exige cautela
Crítico1-29Problemas graves (proyecto abandonado, un solo mantenedor, sin higiene)
Perfil de puntuación
Cada eje es una categoría. La forma importa más que la media: un proyecto sano llena toda la figura, mientras que un perfil de picos y cráteres indica que la fortaleza en una dimensión enmascara el riesgo en otra.
Titularidad
MGnifyOrganización
171 seguidores225 repositorios públicosdesde oct 2017
Este repositorio está respaldado por una organización: una custodia compartida y responsable que puede sobrevivir a cualquier mantenedor individual.
Ecosistemas de paquetes
| Registro | Paquete | Versión | Descargas / mes | Versiones | Última publicación | Etiquetas |
|---|---|---|---|---|---|---|
| PyPI | mgnify_pipelines_toolkit | 1.5.4 | 1147 | 72 | hace 4 días | bioinformaticspipelinesmetagenomics |
Métricas por categoría
Vitalidad
¿Está vivo el proyecto: se escribe código y se publican versiones?
94
Actividad de desarrollo
90Excelente
Cómo se puntúa
| 36/36 | Recencia de push — último push hace 4 días |
| 26.3/36 | Cadencia de commits — 38/52 semanas con commits |
| 18/18 | Volumen de commits — 330 commits en el último año |
| 10/10 | OpenSSF Scorecard: Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10 |
Datos de entrada utilizados
| commits_last_year | 330 |
| human_commit_share | — |
| days_since_last_push | 4 |
| active_weeks_last_year | 38 |
Disciplina de publicación
100Excelente
Cómo se puntúa
| 27/27 | Publica versiones — 72 versiones publicadas |
| 36/36 | Recencia de las versiones — última versión hace 4 días |
| 27/27 | Cadencia de publicación — una versión cada ~13 días |
| 0/10 | OpenSSF Scorecard: Signed-Releases — sin datos |
Datos de entrada utilizados
| releases_count | 72 |
| latest_release_tag | v1.5.4 |
| releases_from_tags | no |
| days_since_latest_release | 4 |
| mean_days_between_releases | 13 |
Excluidos de la puntuación (sin datos o no aplicable): OpenSSF Scorecard: Signed-Releases. Los pesos restantes se han renormalizado.
Comunidad y Adopción
¿Tiene el proyecto usuarios, descargas, atención y unas condiciones acogedoras para quienes contribuyen?
31
Popularidad y adopción
2Crítico
Cómo se puntúa
| 0/60 | Estrellas — 1 estrellas |
| 0/25 | Forks — 2 forks |
| 1.7/15 | Observadores — 3 observadores |
Datos de entrada utilizados
| forks | 2 |
| stars | 1 |
| watchers | 3 |
| growth_state | unverified |
| growth_factor_pct | 100 |
| growth_unverified_reason | no_history |
Salud de la comunidad
50Moderado
Cómo se puntúa
| 22.5/22.5 | README |
| 22.5/22.5 | Licencia — licencia reconocida (Apache-2.0) |
| 0/18 | Guía CONTRIBUTING |
| 0/13.5 | Código de conducta |
| 0/7.2 | Plantilla de issues |
| 0/6.3 | Plantilla de PR |
Datos de entrada utilizados
| has_readme | sí |
| has_license | sí |
| has_contributing | no |
| has_issue_template | no |
| has_code_of_conduct | no |
| has_pull_request_template | no |
Adopción en el ecosistema (descargas)
51Moderado
Cómo se puntúa
| 40.8/80 | Descargas mensuales — 1147 descargas/mes en pypi |
| 0/20 | Dependientes en el registro — no lo informa este ecosistema |
Datos de entrada utilizados
| packages | mgnify_pipelines_toolkit |
| dependents | — |
| ecosystems | pypi |
| total_downloads | — |
| monthly_downloads | 1147 |
Excluidos de la puntuación (sin datos o no aplicable): Dependientes en el registro. Los pesos restantes se han renormalizado.
Sostenibilidad y Gobernanza
¿Sobrevivirá el proyecto a sus personas: factor bus, capacidad de respuesta, quién lo respalda y mantenimiento del paquete?
81
Resiliencia de mantenedores (factor bus)
62Moderado
Cómo se puntúa
| 25.2/54 | Factor bus — la mitad de los commits recae en 2 contribuyente(s) |
| 13.8/22.5 | Distribución de commits — el principal contribuyente firma el 38% de los commits |
| 13.5/13.5 | Amplitud de contribuyentes — 11 contribuyentes |
| 10/10 | OpenSSF Scorecard: Contributors — project has 4 contributing companies or organizations |
Datos de entrada utilizados
| bus_factor | 2 |
| contributors_sampled | 11 |
| top_contributor_share | 0,385 |
Capacidad de respuesta a issues y PR
99Excelente
Cómo se puntúa
| 0/46.8 | Resolución de issues — sin issues o sin datos |
| 37.5/38.3 | Aceptación de PR — 157/160 PR decididos fusionados |
| 15/15 | OpenSSF Scorecard: Code-Review — all changesets reviewed |
Datos de entrada utilizados
| merged_prs | 157 |
| open_issues | 0 |
| closed_issues | 0 |
| issue_closed_ratio | — |
| closed_unmerged_prs | 3 |
Excluidos de la puntuación (sin datos o no aplicable): Resolución de issues. Los pesos restantes se han renormalizado.
Propiedad y custodia
71Bueno
Cómo se puntúa
| 30/30 | Respaldo de la propiedad — propiedad de una organización |
| 0/20 | Dominio verificado |
| 16.1/25 | Alcance del propietario — 171 seguidores de EBI-Metagenomics |
| 25/25 | Trayectoria — 225 repos públicos, cuenta de ~8 años |
Datos de entrada utilizados
| followers | 171 |
| owner_type | Organization |
| is_verified | — |
| owner_login | EBI-Metagenomics |
| public_repos | 225 |
| account_age_days | 3194 |
Mantenimiento de paquetes
100Excelente
Cómo se puntúa
| 25/25 | Publicado y resoluble — 1 paquete(s) en pypi |
| 35/35 | Recencia de publicación — última publicación hace 4 días |
| 20/20 | Historial de versiones — 72 versiones en el registro |
| 20/20 | No obsoleto — activo, ni obsoleto ni retirado |
Datos de entrada utilizados
| packages | mgnify_pipelines_toolkit |
| ecosystems | pypi |
| any_deprecated | no |
| min_days_since_publish | 4 |
Calidad de Ingeniería
¿Existen unas prácticas mínimas de ingeniería y documentación?
76
Prácticas de ingeniería
90Excelente
Cómo se puntúa
| 24/24 | Flujos de trabajo de CI — 4 flujo(s) de trabajo |
| 24/24 | Pruebas presentes |
| 16/16 | Configuración de linter |
| 9.6/9.6 | Hooks de pre-commit |
| 0/6.4 | .editorconfig |
| 16/20 | OpenSSF Scorecard: CI-Tests — 5 out of 6 merged PRs checked by a CI test -- score normalized to 8 |
Datos de entrada utilizados
| has_ci | sí |
| has_tests | sí |
| has_editorconfig | no |
| has_linter_config | sí |
| has_precommit_config | sí |
Documentación
55Moderado
Cómo se puntúa
| 30/30 | README |
| 0/25 | Directorio de documentación |
| 15/15 | Sitio de documentación / página del proyecto — https://www.ebi.ac.uk/metagenomics |
| 10/10 | Descripción del repositorio |
| 0/10 | Topics |
| 0/10 | Wiki |
Datos de entrada utilizados
| topics | — |
| has_wiki | no |
| homepage | https://www.ebi.ac.uk/metagenomics |
| has_readme | sí |
| has_docs_dir | no |
| has_description | sí |
Seguridad
¿Son sólidas las prácticas visibles de seguridad y de cadena de suministro, sin exposición jurisdiccional de alto riesgo sin resolver?
46
Postura de seguridad
46En riesgo
Cómo se puntúa
| 7.5/7.5 | Binary-Artifacts — no binaries found in the repo |
| 0.8/7.5 | Branch-Protection — branch protection is not maximal on development and all release branches |
| 2/2.5 | CI-Tests — 5 out of 6 merged PRs checked by a CI test -- score normalized to 8 |
| 0/2.5 | CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected |
| 7.5/7.5 | Code-Review — all changesets reviewed |
| 2.5/2.5 | Contributors — project has 4 contributing companies or organizations |
| 10/10 | Dangerous-Workflow — no dangerous workflow patterns detected |
| 0/7.5 | Dependency-Update-Tool — no update tool detected |
| 0/5 | Fuzzing — project is not fuzzed |
| 2.5/2.5 | Licencia — license file detected |
| 7.5/7.5 | Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10 |
| 5/5 | Packaging — packaging workflow detected |
| 0/5 | Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
| 0/5 | SAST — SAST tool is not run on all commits -- score normalized to 0 |
| 0/5 | Security-Policy — security policy file not detected |
| 0/7.5 | Signed-Releases — sin datos |
| 0/7.5 | Token-Permissions — detected GitHub workflow tokens with excessive permissions |
| 0/7.5 | Vulnerabilities — 10 existing vulnerabilities detected |
Datos de entrada utilizados
| source | openssf_scorecard |
| checks_evaluated | 17 |
| scorecard_version | v5.5.0 |
| checks_inconclusive | 1 |
| scorecard_aggregate | 4,6 |
Excluidos de la puntuación (sin datos o no aplicable): signed_releases. Los pesos restantes se han renormalizado.
Preparación para IA
¿Hasta qué punto está el repositorio preparado para desarrollarse y mantenerse con agentes de codificación de IA? Es una insignia independiente y experimental — peso 0,0, de modo que se presenta por separado y no afecta a la puntuación de salud global.
45
Contexto y guía para agentes
1Crítico
Cómo se puntúa
| 0/45 | Instrucciones para agentes — sin CLAUDE.md / AGENTS.md / reglas de editor |
| 0/15 | Documentación legible por máquinas (llms.txt) |
| 0/40 | Historial de commits legible — sin datos |
Datos de entrada utilizados
| has_llms_txt | no |
| legible_history_share | — |
| agent_instruction_files | — |
| agent_instruction_max_bytes | — |
Excluidos de la puntuación (sin datos o no aplicable): Historial de commits legible. Los pesos restantes se han renormalizado.
Cómo se puntúa
| 18/18 | Arranque con un solo comando — Taskfile.yml |
| 22/22 | Pruebas automatizadas |
| 11/11 | Configuración de lint / formato |
| 0/11 | Verificación estática de tipos |
| 10/10 | Entorno reproducible — Dockerfile, lockfile |
| 0/10 | Práctica demostrada con agentes — sin datos |
| 0/8 | Mantenimiento automatizado — sin datos |
| 0/10 | OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
Datos de entrada utilizados
| has_nix | no |
| has_tests | sí |
| lockfiles | uv.lock |
| has_dockerfile | sí |
| typed_language | no |
| bootstrap_files | Taskfile.yml |
| has_devcontainer | no |
| has_linter_config | sí |
| typecheck_configs | — |
| agent_commit_share | — |
| toolchain_manifests | — |
| dependency_bot_commit_share | — |
Excluidos de la puntuación (sin datos o no aplicable): Práctica demostrada con agentes, Mantenimiento automatizado. Los pesos restantes se han renormalizado.
Legibilidad del código para modelos
55Moderado
Cómo se puntúa
| 0/45 | Código verificable por tipos — Python sin configuración de verificación de tipos |
| 55/55 | Tamaños de archivo manejables — 0/86 archivos fuente de más de 60 KB |
Datos de entrada utilizados
| primary_language | Python |
| largest_source_bytes | 48.176 |
| source_files_sampled | 86 |
| oversized_source_files | 0 |
Datos clave
1estrellas de GitHub
11contribuidores
330commits en los últimos 12 meses
4días desde el último push
72versiones publicadas
2factor bus
0issues abiertas
PyPIecosistemas de paquetes
Más detalle
OpenSSF Scorecard 4.6 / 10
4.6agregado
Evaluación de seguridad independiente y agnóstica en cuanto a herramientas, procedente del proyecto de código abierto OpenSSF Scorecard. Cada comprobación premia una práctica de seguridad, no la herramienta de un proveedor concreto. Las comprobaciones que Scorecard no pudo determinar se marcan como n/d y se excluyen de la puntuación de seguridad (nunca se cuentan como cero).
| 10 | Binary-Artifacts | no binaries found in the repo |
| 1 | Branch-Protection | branch protection is not maximal on development and all release branches |
| 8 | CI-Tests | 5 out of 6 merged PRs checked by a CI test -- score normalized to 8 |
| 0 | CII-Best-Practices | no effort to earn an OpenSSF best practices badge detected |
| 10 | Code-Review | all changesets reviewed |
| 10 | Contributors | project has 4 contributing companies or organizations |
| 10 | Dangerous-Workflow | no dangerous workflow patterns detected |
| 0 | Dependency-Update-Tool | no update tool detected |
| 0 | Fuzzing | project is not fuzzed |
| 10 | License | license file detected |
| 10 | Maintained | 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10 |
| 10 | Packaging | packaging workflow detected |
| 0 | Pinned-Dependencies | dependency not pinned by hash detected -- score normalized to 0 |
| 0 | SAST | SAST tool is not run on all commits -- score normalized to 0 |
| 0 | Security-Policy | security policy file not detected |
| n/d | Signed-Releases | no releases found |
| 0 | Token-Permissions | detected GitHub workflow tokens with excessive permissions |
| 0 | Vulnerabilities | 10 existing vulnerabilities detected |
Dependencias directas 10
| Registro | Paquete | Restricción de versión | Manifiesto |
|---|---|---|---|
| PyPI | biopython | ==1.85 | pyproject.toml |
| PyPI | pandas | ==2.2.3 | pyproject.toml |
| PyPI | pandera | ==0.27.1 | pyproject.toml |
| PyPI | pydantic | <2.12.0 | pyproject.toml |
| PyPI | pyfastx | ==2.2.0 | pyproject.toml |
| PyPI | intervaltree | ==3.1.0 | pyproject.toml |
| PyPI | click | ~=8.1.8 | pyproject.toml |
| PyPI | requests | ~=2.32 | pyproject.toml |
| PyPI | bcbio-gff | ==0.7.1 | pyproject.toml |
| PyPI | datamodel-code-generator | ==0.54.1 | pyproject.toml |
Todas las dependencias 65
Conjunto completo de dependencias resueltas según el grafo de dependencias de GitHub: 10 paquetes directos y 55 indirectos (transitivos). El cierre transitivo es completo cuando el repositorio incluye un lockfile.
| Registro | Paquete | Versión | Relación |
|---|---|---|---|
| PyPI | bcbio-gff | 0.7.1 | directa |
| PyPI | biopython | 1.85 | directa |
| PyPI | click | 8.1.8 | directa |
| PyPI | datamodel-code-generator | 0.54.1 | directa |
| PyPI | intervaltree | 3.1.0 | directa |
| PyPI | pandas | 2.2.3 | directa |
| PyPI | pandera | 0.27.1 | directa |
| PyPI | pydantic | 2.11.10 | directa |
| PyPI | pyfastx | 2.2.0 | directa |
| PyPI | requests | 2.32.5 | directa |
| PyPI | annotated-types | 0.7.0 | indirecta |
| PyPI | argcomplete | 3.6.3 | indirecta |
| PyPI | attrs | 25.4.0 | indirecta |
| PyPI | black | 26.5.1 | indirecta |
| PyPI | certifi | 2025.11.12 | indirecta |
| PyPI | cfgv | 3.5.0 | indirecta |
| PyPI | charset-normalizer | 3.4.4 | indirecta |
| PyPI | colorama | 0.4.6 | indirecta |
| PyPI | distlib | 0.4.0 | indirecta |
| PyPI | filelock | 3.20.1 | indirecta |
| PyPI | genson | 1.3.0 | indirecta |
| PyPI | identify | 2.6.15 | indirecta |
| PyPI | idna | 3.11 | indirecta |
| PyPI | inflect | 7.5.0 | indirecta |
| PyPI | iniconfig | 2.3.0 | indirecta |
| PyPI | isal | 1.8.0 | indirecta |
| PyPI | isort | 8.0.1 | indirecta |
| PyPI | jinja2 | 3.1.6 | indirecta |
| PyPI | jsonschema | 4.25.1 | indirecta |
| PyPI | jsonschema-specifications | 2025.9.1 | indirecta |
| PyPI | markupsafe | 3.0.3 | indirecta |
| PyPI | mgnify-pipelines-toolkit | 1.5.2 | indirecta |
| PyPI | more-itertools | 10.8.0 | indirecta |
| PyPI | mypy-extensions | 1.1.0 | indirecta |
| PyPI | nodeenv | 1.10.0 | indirecta |
| PyPI | numpy | 2.4.0 | indirecta |
| PyPI | packaging | 25.0 | indirecta |
| PyPI | pathspec | 1.1.1 | indirecta |
| PyPI | platformdirs | 4.5.1 | indirecta |
| PyPI | pluggy | 1.6.0 | indirecta |
| PyPI | pre-commit | 4.2.0 | indirecta |
| PyPI | pydantic-core | 2.33.2 | indirecta |
| PyPI | pytest | 8.3.5 | indirecta |
| PyPI | pytest-md | 0.2.0 | indirecta |
| PyPI | pytest-workflow | 2.1.0 | indirecta |
| PyPI | python-dateutil | 2.9.0.post0 | indirecta |
| PyPI | pytokens | 0.4.1 | indirecta |
| PyPI | pytz | 2025.2 | indirecta |
| PyPI | pyyaml | 6.0.3 | indirecta |
| PyPI | referencing | 0.37.0 | indirecta |
| PyPI | rpds-py | 0.30.0 | indirecta |
| PyPI | ruff | 0.8.4 | indirecta |
| PyPI | six | 1.17.0 | indirecta |
| PyPI | sortedcontainers | 2.4.0 | indirecta |
| PyPI | tomli | 2.4.0 | indirecta |
| PyPI | typeguard | 4.4.4 | indirecta |
| PyPI | typing-extensions | 4.15.0 | indirecta |
| PyPI | typing-inspect | 0.9.0 | indirecta |
| PyPI | typing-inspection | 0.4.2 | indirecta |
| PyPI | tzdata | 2025.3 | indirecta |
| PyPI | urllib3 | 2.6.2 | indirecta |
| PyPI | virtualenv | 20.35.4 | indirecta |
| PyPI | xopen | 2.0.2 | indirecta |
| PyPI | zlib-ng | 1.0.0 | indirecta |
| PyPI | zstandard | 0.25.0 | indirecta |
Informe JSON sin procesar legible por máquina
{
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"size_kb": 139420,
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"languages": {
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"Dockerfile": 523
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"pushed_at": "2026-07-13T12:24:18Z",
"created_at": "2023-11-21T10:05:00Z",
"owner_type": "Organization",
"updated_at": "2026-07-13T12:23:12Z",
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"matches_repo": null,
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"maintainers_count": null,
"monthly_downloads": 1147,
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"latest_version_yanked": null,
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"forks": 2,
"stars": 1,
"watchers": 3,
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"ai_readiness": {
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"example_dirs": [],
"has_llms_txt": false,
"has_dockerfile": true,
"has_mcp_signal": false,
"bootstrap_files": [
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],
"api_schema_files": [],
"has_devcontainer": false,
"typecheck_configs": [],
"largest_source_bytes": 48176,
"source_files_sampled": 86,
"oversized_source_files": 0,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
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"ecosystems": [
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"dependencies": [
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"version_constraint": "==1.85"
},
{
"name": "pandas",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": "==2.2.3"
},
{
"name": "pandera",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": "==0.27.1"
},
{
"name": "pydantic",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": "<2.12.0"
},
{
"name": "pyfastx",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": "==2.2.0"
},
{
"name": "intervaltree",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": "==3.1.0"
},
{
"name": "click",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": "~=8.1.8"
},
{
"name": "requests",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": "~=2.32"
},
{
"name": "bcbio-gff",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": "==0.7.1"
},
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"name": "Forks",
"detail": "2 forks",
"points": 0,
"status": "missed",
"details": [
{
"code": "forks",
"params": {
"count": 2
}
}
],
"max_points": 25
},
{
"key": "watchers",
"name": "Watchers",
"detail": "3 watchers",
"points": 1.7,
"status": "partial",
"details": [
{
"code": "watchers",
"params": {
"count": 3
}
}
],
"max_points": 15
}
]
},
{
"key": "community_health",
"band": "moderate",
"name": "Community health",
"note": null,
"notes": [],
"value": 50,
"inputs": {
"has_readme": true,
"has_license": true,
"has_contributing": false,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 22.5,
"status": "met",
"details": [],
"max_points": 22.5
},
{
"key": "license",
"name": "License",
"detail": "recognized license (Apache-2.0)",
"points": 22.5,
"status": "met",
"details": [
{
"code": "license_standard",
"params": {}
},
{
"code": "license_spdx",
"params": {
"spdx": "Apache-2.0"
}
}
],
"max_points": 22.5
},
{
"key": "contributing_guide",
"name": "CONTRIBUTING guide",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "code_of_conduct",
"name": "Code of conduct",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 13.5
},
{
"key": "issue_template",
"name": "Issue template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.2
},
{
"key": "pr_template",
"name": "PR template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.3
}
]
},
{
"key": "ecosystem_adoption",
"band": "moderate",
"name": "Ecosystem adoption (downloads)",
"note": "Excluded from scoring (no data or not applicable): Registry dependents. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"registry_dependents"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 51,
"inputs": {
"packages": [
"mgnify_pipelines_toolkit"
],
"dependents": null,
"ecosystems": "pypi",
"total_downloads": null,
"monthly_downloads": 1147
},
"components": [
{
"key": "monthly_downloads",
"name": "Monthly downloads",
"detail": "1,147 downloads/month across pypi",
"points": 40.8,
"status": "partial",
"details": [
{
"code": "downloads_monthly",
"params": {
"count": 1147,
"ecosystems": "pypi"
}
}
],
"max_points": 80
},
{
"key": "registry_dependents",
"name": "Registry dependents",
"detail": "not reported by this ecosystem",
"points": 0,
"status": "excluded",
"details": [
{
"code": "not_reported_by_this_ecosystem",
"params": {}
}
],
"max_points": 20
}
]
}
],
"description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
},
{
"key": "governance",
"band": "good",
"name": "Sustainability & Governance",
"value": 81,
"weight": 0.24,
"metrics": [
{
"key": "maintainer_resilience",
"band": "moderate",
"name": "Maintainer resilience (bus factor)",
"note": null,
"notes": [],
"value": 62,
"inputs": {
"bus_factor": 2,
"contributors_sampled": 11,
"top_contributor_share": 0.385
},
"components": [
{
"key": "bus_factor",
"name": "Bus factor",
"detail": "2 contributor(s) cover half of all commits",
"points": 25.2,
"status": "partial",
"details": [
{
"code": "bus_factor",
"params": {
"count": 2
}
}
],
"max_points": 54
},
{
"key": "commit_distribution",
"name": "Commit distribution",
"detail": "top contributor authored 38% of commits",
"points": 13.8,
"status": "partial",
"details": [
{
"code": "top_contributor_share",
"params": {
"share": 38
}
}
],
"max_points": 22.5
},
{
"key": "contributor_breadth",
"name": "Contributor breadth",
"detail": "11 contributors",
"points": 13.5,
"status": "met",
"details": [
{
"code": "contributors_sampled",
"params": {
"count": 11
}
}
],
"max_points": 13.5
},
{
"key": "openssf_scorecard_contributors",
"name": "OpenSSF Scorecard: Contributors",
"detail": "project has 4 contributing companies or organizations",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "excellent",
"name": "Issue & PR responsiveness",
"note": "Excluded from scoring (no data or not applicable): Issue resolution. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"issue_resolution"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 99,
"inputs": {
"merged_prs": 157,
"open_issues": 0,
"closed_issues": 0,
"issue_closed_ratio": null,
"closed_unmerged_prs": 3
},
"components": [
{
"key": "issue_resolution",
"name": "Issue resolution",
"detail": "no issues or no data",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_issues_or_data",
"params": {}
}
],
"max_points": 46.75
},
{
"key": "pr_acceptance",
"name": "PR acceptance",
"detail": "157/160 decided PRs merged",
"points": 37.5,
"status": "partial",
"details": [
{
"code": "decided_prs_merged",
"params": {
"merged": 157,
"decided": 160
}
}
],
"max_points": 38.25
},
{
"key": "openssf_scorecard_code_review",
"name": "OpenSSF Scorecard: Code-Review",
"detail": "all changesets reviewed",
"points": 15,
"status": "met",
"details": [],
"max_points": 15
}
]
},
{
"key": "stewardship",
"band": "good",
"name": "Ownership & stewardship",
"note": null,
"notes": [],
"value": 71,
"inputs": {
"followers": 171,
"owner_type": "Organization",
"is_verified": null,
"owner_login": "EBI-Metagenomics",
"public_repos": 225,
"account_age_days": 3194
},
"components": [
{
"key": "ownership_backing",
"name": "Ownership backing",
"detail": "organization-owned",
"points": 30,
"status": "met",
"details": [
{
"code": "owner_organization",
"params": {}
}
],
"max_points": 30
},
{
"key": "verified_domain",
"name": "Verified domain",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "owner_reach",
"name": "Owner reach",
"detail": "171 followers of EBI-Metagenomics",
"points": 16.1,
"status": "partial",
"details": [
{
"code": "owner_followers",
"params": {
"count": 171,
"login": "EBI-Metagenomics"
}
}
],
"max_points": 25
},
{
"key": "track_record",
"name": "Track record",
"detail": "225 public repos, account ~8 yr old",
"points": 25,
"status": "met",
"details": [
{
"code": "public_repos",
"params": {
"count": 225
}
},
{
"code": "account_age_years",
"params": {
"years": 8
}
}
],
"max_points": 25
}
]
},
{
"key": "package_maintenance",
"band": "excellent",
"name": "Package maintenance",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"packages": [
"mgnify_pipelines_toolkit"
],
"ecosystems": "pypi",
"any_deprecated": false,
"min_days_since_publish": 4
},
"components": [
{
"key": "published_resolvable",
"name": "Published & resolvable",
"detail": "1 package(s) on pypi",
"points": 25,
"status": "met",
"details": [
{
"code": "packages_published",
"params": {
"count": 1,
"ecosystems": "pypi"
}
}
],
"max_points": 25
},
{
"key": "publish_recency",
"name": "Publish recency",
"detail": "latest publish 4 days ago",
"points": 35,
"status": "met",
"details": [
{
"code": "publish_recency",
"params": {
"days": 4
}
}
],
"max_points": 35
},
{
"key": "version_history",
"name": "Version history",
"detail": "72 published versions",
"points": 20,
"status": "met",
"details": [
{
"code": "published_versions",
"params": {
"count": 72
}
}
],
"max_points": 20
},
{
"key": "not_deprecated",
"name": "Not deprecated",
"detail": "active, not deprecated or yanked",
"points": 20,
"status": "met",
"details": [
{
"code": "package_not_deprecated",
"params": {}
}
],
"max_points": 20
}
]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "good",
"name": "Engineering Quality",
"value": 76,
"weight": 0.2,
"metrics": [
{
"key": "engineering_practices",
"band": "excellent",
"name": "Engineering practices",
"note": null,
"notes": [],
"value": 90,
"inputs": {
"has_ci": true,
"has_tests": true,
"has_editorconfig": false,
"has_linter_config": true,
"has_precommit_config": true
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": "4 workflow(s)",
"points": 24,
"status": "met",
"details": [
{
"code": "ci_workflows",
"params": {
"count": 4
}
}
],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 24,
"status": "met",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": null,
"points": 16,
"status": "met",
"details": [],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 9.6,
"status": "met",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "5 out of 6 merged PRs checked by a CI test -- score normalized to 8",
"points": 16,
"status": "partial",
"details": [],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "moderate",
"name": "Documentation",
"note": null,
"notes": [],
"value": 55,
"inputs": {
"topics": [],
"has_wiki": false,
"homepage": "https://www.ebi.ac.uk/metagenomics",
"has_readme": true,
"has_docs_dir": false,
"has_description": true
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 30,
"status": "met",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": "https://www.ebi.ac.uk/metagenomics",
"points": 15,
"status": "met",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
},
{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "at_risk",
"name": "Security",
"value": 46,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "at_risk",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 46,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 17,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 1,
"scorecard_aggregate": 4.6
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "branch protection is not maximal on development and all release branches",
"points": 0.8,
"status": "partial",
"details": [],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "5 out of 6 merged PRs checked by a CI test -- score normalized to 8",
"points": 2,
"status": "partial",
"details": [],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "all changesets reviewed",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 4 contributing companies or organizations",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no dangerous workflow patterns detected",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "no update tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow detected",
"points": 5,
"status": "met",
"details": [],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "SAST tool is not run on all commits -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "detected GitHub workflow tokens with excessive permissions",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "10 existing vulnerabilities detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "excellent",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"review_only_matches": 0,
"assessed_self_published_locations": 8
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "at_risk",
"name": "AI Readiness",
"value": 45,
"weight": 0,
"metrics": [
{
"key": "ai_agent_context",
"band": "critical",
"name": "Agent context & guidance",
"note": "Excluded from scoring (no data or not applicable): Legible commit history. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"legible_commit_history"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 1,
"inputs": {
"has_llms_txt": false,
"legible_history_share": null,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "legible_commit_history",
"name": "Legible commit history",
"detail": "no data",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 40
}
]
},
{
"key": "ai_verify_loop",
"band": "good",
"name": "Verify loop (build / test / typecheck)",
"note": "Excluded from scoring (no data or not applicable): Demonstrated agent practice, Automated maintenance. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"demonstrated_agent_practice",
"automated_maintenance"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 74,
"inputs": {
"has_nix": false,
"has_tests": true,
"lockfiles": [
"uv.lock"
],
"has_dockerfile": true,
"typed_language": false,
"bootstrap_files": [
"Taskfile.yml"
],
"has_devcontainer": false,
"has_linter_config": true,
"typecheck_configs": [],
"agent_commit_share": null,
"toolchain_manifests": [],
"dependency_bot_commit_share": null
},
"components": [
{
"key": "one_command_bootstrap",
"name": "One-command bootstrap",
"detail": "Taskfile.yml",
"points": 18,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "Taskfile.yml"
}
}
],
"max_points": 18
},
{
"key": "automated_tests",
"name": "Automated tests",
"detail": null,
"points": 22,
"status": "met",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": null,
"points": 11,
"status": "met",
"details": [],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": "Dockerfile, lockfile",
"points": 10,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "Dockerfile, lockfile"
}
}
],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "no data",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "no data",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "moderate",
"name": "Code legibility for models",
"note": null,
"notes": [],
"value": 55,
"inputs": {
"primary_language": "Python",
"largest_source_bytes": 48176,
"source_files_sampled": 86,
"oversized_source_files": 0
},
"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "Python without a type-check config",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_typecheck_config_language",
"params": {
"language": "Python"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "0/86 source files over 60KB",
"points": 55,
"status": "met",
"details": [
{
"code": "oversized_source_files",
"params": {
"kb": 60,
"sampled": 86,
"oversized": 0
}
}
],
"max_points": 55
}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.13.0"
},
"warnings": [],
"report_type": "repository",
"generated_at": "2026-07-17T21:56:38.670080Z",
"schema_version": "0.12.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/e/EBi-Metagenomics/mgnify-pipelines-toolkit.svg",
"full_name": "EBi-Metagenomics/mgnify-pipelines-toolkit",
"license_state": "standard",
"license_spdx": "Apache-2.0"
}Las puntuaciones son señales, no garantías. Reflejan prácticas públicamente visibles en GitHub; no son una auditoría de código ni una garantía de seguridad.
Los datos ausentes se excluyen y los pesos se renormalizan; nunca se puntúan como cero. La metodología es versionada y abierta: métricas v1.13.0, esquema v0.12.0 — metodología completa · wiki de métricas.
Cómo se sitúa un resultado dentro del registro general: estadísticas agregadas — PyPI.