Registro público
Informe de salud del softwareesquema 0.11.0 · métricas 1.13.0 · 2026-07-15 13:03 UTC

bijux / bijux-proteomics

PythonApache-2.0★ 2 estrellas⑂ 0 forksdesde ene 2026Ver en GitHub ↗

bijux/bijux-proteomics tiene un índice de salud de 57 sobre 100, lo que lo sitúa en la banda Moderado. Su puntuación más alta es Engineering Quality (82/100) y la más baja, Sustainability & Governance (26/100). Se actualizó por última vez hace 4 días. Una sola persona concentra la mayor parte del trabajo reciente.

57
global / 100
Moderado

Índice de salud del software

Las métricas se agrupan en categorías ponderadas sobre una escala de 1 a 100. El resultado global parte de su media; cuando la evidencia pública activa la Política de Jurisdicciones de Alto Riesgo, la calificación se ajusta y recibe el límite 49 (En riesgo). Preparación para IA queda fuera.

57
Excelente85-100Ejemplar; cumple prácticamente todos los criterios evaluados
Bueno70-84Saludable; carencias menores
Moderado50-69Aceptable con carencias notables; se recomienda revisión
En riesgo30-49Debilidades significativas; su adopción exige cautela
Crítico1-29Problemas graves (proyecto abandonado, un solo mantenedor, sin higiene)
VitalidadComunidad yAdopciónSostenibilidady GobernanzaCalidad deIngenieríaSeguridadPreparaciónpara IA

Perfil de puntuación

Cada eje es una categoría. La forma importa más que la media: un proyecto sano llena toda la figura, mientras que un perfil de picos y cráteres indica que la fortaleza en una dimensión enmascara el riesgo en otra.

Titularidad

Bijan MousaviCuenta personal
5 seguidores12 repositorios públicosdesde jul 2025

Este repositorio pertenece a una cuenta personal. Un proyecto con un único propietario conlleva más riesgo de continuidad que uno respaldado por una organización.

Métricas por categoría

Vitalidad

¿Está vivo el proyecto: se escribe código y se publican versiones?

80Bueno · 22% del índice global
Cómo se puntúa
36/36Recencia de push — último push hace 4 días
9/36Cadencia de commits — 13/52 semanas con commits
18/18Volumen de commits — 6881 commits en el último año
10/10OpenSSF Scorecard: Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
Datos de entrada utilizados
commits_last_year6881
human_commit_share
days_since_last_push4
active_weeks_last_year13
Cómo se puntúa
27/27Publica versiones — 5 versiones publicadas
36/36Recencia de las versiones — última versión hace 14 días
27/27Cadencia de publicación — una versión cada ~20,4 días
0/10OpenSSF Scorecard: Signed-Releases — Project has not signed or included provenance with any releases.
Datos de entrada utilizados
releases_count5
latest_release_tagv0.3.8
releases_from_tagsno
days_since_latest_release14
mean_days_between_releases20,4

Comunidad y Adopción

¿Tiene el proyecto usuarios, descargas, atención y unas condiciones acogedoras para quienes contribuyen?

40En riesgo · 18% del índice global
Cómo se puntúa
0/60Estrellas — 2 estrellas
0/25Forks — 0 forks
0/15Observadores — 0 observadores
Datos de entrada utilizados
forks0
stars2
watchers0
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history
Cómo se puntúa
22.5/22.5README
22.5/22.5Licencia — licencia reconocida (Apache-2.0)
18/18Guía CONTRIBUTING
13.5/13.5Código de conducta
0/7.2Plantilla de issues
0/6.3Plantilla de PR
Datos de entrada utilizados
has_readme
has_license
has_contributing
has_issue_templateno
has_code_of_conduct
has_pull_request_templateno

Sostenibilidad y Gobernanza

¿Sobrevivirá el proyecto a sus personas: factor bus, capacidad de respuesta, quién lo respalda y mantenimiento del paquete?

26Crítico · 24% del índice global
Cómo se puntúa
9/54Factor bus — la mitad de los commits recae en 1 contribuyente(s)
0.1/22.5Distribución de commits — el principal contribuyente firma el 100% de los commits
4.1/13.5Amplitud de contribuyentes — 3 contribuyentes
0/10OpenSSF Scorecard: Contributors — project has 0 contributing companies or organizations -- score normalized to 0
Datos de entrada utilizados
bus_factor1
contributors_sampled3
top_contributor_share0,995
Cómo se puntúa
0/46.8Resolución de issues — sin issues o sin datos
19.5/38.3Aceptación de PR — 95/186 PR decididos fusionados
0/15OpenSSF Scorecard: Code-Review — Found 0/2 approved changesets -- score normalized to 0
Datos de entrada utilizados
merged_prs95
open_issues0
closed_issues0
issue_closed_ratio
closed_unmerged_prs91
Excluidos de la puntuación (sin datos o no aplicable): Resolución de issues. Los pesos restantes se han renormalizado.
Cómo se puntúa
10/30Respaldo de la propiedad — cuenta personal (usuario)
0/20Dominio verificado — no aplicable a cuentas de usuario
5.6/25Alcance del propietario — 5 seguidores de bijux
10.1/25Trayectoria — 12 repos públicos, cuenta de ~0 años
Datos de entrada utilizados
followers5
owner_typeUser
is_verified
owner_loginbijux
public_repos12
account_age_days357
Excluidos de la puntuación (sin datos o no aplicable): Dominio verificado. Los pesos restantes se han renormalizado.

Calidad de Ingeniería

¿Existen unas prácticas mínimas de ingeniería y documentación?

82Bueno · 20% del índice global
Cómo se puntúa
24/24Flujos de trabajo de CI — 11 flujo(s) de trabajo
24/24Pruebas presentes
16/16Configuración de linter — ruff.toml, tox.ini
0/9.6Hooks de pre-commit
0/6.4.editorconfig
20/20OpenSSF Scorecard: CI-Tests — 2 out of 2 merged PRs checked by a CI test -- score normalized to 10
Datos de entrada utilizados
has_ci
has_tests
has_editorconfigno
has_linter_config
has_precommit_configno
Cómo se puntúa
30/30README
25/25Directorio de documentación
15/15Sitio de documentación / página del proyecto — http://bijux.io/bijux-proteomics/
0/10Descripción del repositorio
0/10Topics
10/10Wiki
Datos de entrada utilizados
topics
has_wiki
homepagehttp://bijux.io/bijux-proteomics/
has_readme
has_docs_dir
has_descriptionno

Seguridad

¿Son sólidas las prácticas visibles de seguridad y de cadena de suministro, sin exposición jurisdiccional de alto riesgo sin resolver?

59Moderado · 16% del índice global
Cómo se puntúa
7.5/7.5Binary-Artifacts — no binaries found in the repo
3/7.5Branch-Protection — branch protection is not maximal on development and all release branches
2.5/2.5CI-Tests — 2 out of 2 merged PRs checked by a CI test -- score normalized to 10
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
0/7.5Code-Review — Found 0/2 approved changesets -- score normalized to 0
0/2.5Contributors — project has 0 contributing companies or organizations -- score normalized to 0
10/10Dangerous-Workflow — no dangerous workflow patterns detected
7.5/7.5Dependency-Update-Tool — update tool detected
0/5Fuzzing — project is not fuzzed
2.5/2.5Licencia — license file detected
7.5/7.5Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
5/5Packaging — packaging workflow detected
5/5Pinned-Dependencies — all dependencies are pinned
0/5SAST — SAST tool is not run on all commits -- score normalized to 0
5/5Security-Policy — security policy file detected
0/7.5Signed-Releases — Project has not signed or included provenance with any releases.
0/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
6/7.5Vulnerabilities — 2 existing vulnerabilities detected
Datos de entrada utilizados
sourceopenssf_scorecard
checks_evaluated18
scorecard_versionv5.5.0
checks_inconclusive0
scorecard_aggregate5,9

Preparación para IA

¿Hasta qué punto está el repositorio preparado para desarrollarse y mantenerse con agentes de codificación de IA? Es una insignia independiente y experimental — peso 0,0, de modo que se presenta por separado y no afecta a la puntuación de salud global.

57Moderado · 0% del índice global
Cómo se puntúa
0/45Instrucciones para agentes — sin CLAUDE.md / AGENTS.md / reglas de editor
0/15Documentación legible por máquinas (llms.txt)
0/40Historial de commits legible — sin datos
Datos de entrada utilizados
has_llms_txtno
legible_history_share
agent_instruction_files
agent_instruction_max_bytes
Excluidos de la puntuación (sin datos o no aplicable): Historial de commits legible. Los pesos restantes se han renormalizado.
Cómo se puntúa
18/18Arranque con un solo comando — Makefile
22/22Pruebas automatizadas
11/11Configuración de lint / formato — ruff.toml, tox.ini
11/11Verificación estática de tipos — configs/mypy.ini, packages/agentic-proteins/src/agentic_proteins/py.typed, packages/bijux-proteomics-core/src/bijux_proteomics/py.typed, packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed, packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed, packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed, packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed, packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed, packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed, packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed, packages/proteomics-core/src/proteomics_core/py.typed, packages/proteomics-foundation/src/proteomics_foundation/py.typed, packages/proteomics-intelligence/src/proteomics_intelligence/py.typed, packages/proteomics-knowledge/src/proteomics_knowledge/py.typed, packages/proteomics-lab/src/proteomics_lab/py.typed, packages/proteomics-runtime/src/proteomics_runtime/py.typed, packages/proteomics/src/proteomics/py.typed
10/10Entorno reproducible — lockfile
0/10Práctica demostrada con agentes — sin datos
5/8Mantenimiento automatizado — automatización de dependencias configurada, no observada en los commits muestreados
10/10OpenSSF Scorecard: Pinned-Dependencies — all dependencies are pinned
Datos de entrada utilizados
has_nixno
has_tests
lockfilespackage-lock.json, uv.lock
has_dockerfileno
typed_languageno
bootstrap_filesMakefile
has_devcontainerno
has_linter_config
typecheck_configsconfigs/mypy.ini, packages/agentic-proteins/src/agentic_proteins/py.typed, packages/bijux-proteomics-core/src/bijux_proteomics/py.typed, packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed, packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed, packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed, packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed, packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed, packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed, packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed, packages/proteomics-core/src/proteomics_core/py.typed, packages/proteomics-foundation/src/proteomics_foundation/py.typed, packages/proteomics-intelligence/src/proteomics_intelligence/py.typed, packages/proteomics-knowledge/src/proteomics_knowledge/py.typed, packages/proteomics-lab/src/proteomics_lab/py.typed, packages/proteomics-runtime/src/proteomics_runtime/py.typed, packages/proteomics/src/proteomics/py.typed
agent_commit_share
toolchain_manifests
dependency_bot_commit_share0
Excluidos de la puntuación (sin datos o no aplicable): Práctica demostrada con agentes. Los pesos restantes se han renormalizado.
Cómo se puntúa
27/45Código verificable por tipos — Python con configuración de verificación de tipos (configs/mypy.ini, packages/agentic-proteins/src/agentic_proteins/py.typed, packages/bijux-proteomics-core/src/bijux_proteomics/py.typed, packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed, packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed, packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed, packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed, packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed, packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed, packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed, packages/proteomics-core/src/proteomics_core/py.typed, packages/proteomics-foundation/src/proteomics_foundation/py.typed, packages/proteomics-intelligence/src/proteomics_intelligence/py.typed, packages/proteomics-knowledge/src/proteomics_knowledge/py.typed, packages/proteomics-lab/src/proteomics_lab/py.typed, packages/proteomics-runtime/src/proteomics_runtime/py.typed, packages/proteomics/src/proteomics/py.typed)
54.8/55Tamaños de archivo manejables — 12/3667 archivos fuente de más de 60 KB
Datos de entrada utilizados
primary_languagePython
largest_source_bytes576.731
source_files_sampled3667
oversized_source_files12
Cómo se puntúa
0/40Esquema de API (OpenAPI/GraphQL/proto)
0/20Servidor MCP
40/40Ejemplos ejecutables — examples
Datos de entrada utilizados
example_dirsexamples
has_mcp_signalno
api_schema_files

Datos clave

2estrellas de GitHub
3contribuidores
6881commits en los últimos 12 meses
4días desde el último push
5versiones publicadas
1factor bus
0issues abiertas
npm, PyPIecosistemas de paquetes

Advertencias de recopilación de datos

  • Could not fetch pypi package 'bijux-proteomics-repository' from its registry

Más detalle

OpenSSF Scorecard 5.9 / 10
5.9agregado

Evaluación de seguridad independiente y agnóstica en cuanto a herramientas, procedente del proyecto de código abierto OpenSSF Scorecard. Cada comprobación premia una práctica de seguridad, no la herramienta de un proveedor concreto. Las comprobaciones que Scorecard no pudo determinar se marcan como n/d y se excluyen de la puntuación de seguridad (nunca se cuentan como cero).Scorecard v5.5.0 · 2026-07-15 13:03 UTC

10Binary-Artifactsno binaries found in the repo
4Branch-Protectionbranch protection is not maximal on development and all release branches
10CI-Tests2 out of 2 merged PRs checked by a CI test -- score normalized to 10
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
0Code-ReviewFound 0/2 approved changesets -- score normalized to 0
0Contributorsproject has 0 contributing companies or organizations -- score normalized to 0
10Dangerous-Workflowno dangerous workflow patterns detected
10Dependency-Update-Toolupdate tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
10Maintained30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
10Packagingpackaging workflow detected
10Pinned-Dependenciesall dependencies are pinned
0SASTSAST tool is not run on all commits -- score normalized to 0
10Security-Policysecurity policy file detected
0Signed-ReleasesProject has not signed or included provenance with any releases.
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
8Vulnerabilities2 existing vulnerabilities detected
Todas las dependencias 447

Conjunto completo de dependencias resueltas según el grafo de dependencias de GitHub: 0 paquetes directos y 447 indirectos (transitivos). El cierre transitivo es completo cuando el repositorio incluye un lockfile.

RegistroPaqueteVersiónRelación
npm@borewit/text-codec0.2.2indirecta
npm@inquirer/core6.0.0indirecta
npm@inquirer/select1.3.3indirecta
npm@inquirer/type1.5.5indirecta
npm@lukeed/csprng1.1.0indirecta
npm@nestjs/axios4.0.1indirecta
npm@nestjs/common11.1.27indirecta
npm@nestjs/core11.1.27indirecta
npm@nuxtjs/opencollective0.3.2indirecta
npm@openapitools/openapi-generator-cli2.39.1indirecta
npm@redocly/cli2.37.0indirecta
npm@tokenizer/inflate0.4.1indirecta
npm@tokenizer/token0.3.0indirecta
npm@types/mute-stream0.0.4indirecta
npm@types/node20.19.39indirecta
npm@types/node25.5.2indirecta
npm@types/wrap-ansi3.0.0indirecta
npmagent-base6.0.2indirecta
npmagent-base9.0.0indirecta
npmansi-escapes4.3.2indirecta
npmansi-regex5.0.1indirecta
npmansi-regex6.2.2indirecta
npmansi-styles4.3.0indirecta
npmansi-styles6.2.3indirecta
npmast-types0.13.4indirecta
npmasynckit0.4.0indirecta
npmaxios1.16.1indirecta
npmbalanced-match4.0.4indirecta
npmbasic-ftp5.3.1indirecta
npmbrace-expansion5.0.6indirecta
npmcall-bind-apply-helpers1.0.2indirecta
npmchalk4.1.2indirecta
npmchalk5.6.2indirecta
npmcli-spinners2.9.2indirecta
npmcli-width4.1.0indirecta
npmcliui9.0.1indirecta
npmclone1.0.4indirecta
npmcolor-convert2.0.1indirecta
npmcolor-name1.1.4indirecta
npmcombined-stream1.0.8indirecta
npmcommander8.3.0indirecta
npmcompare-versions6.1.1indirecta
npmconcurrently10.0.3indirecta
npmconsola2.15.3indirecta
npmconsole.table0.10.0indirecta
npmdata-uri-to-buffer8.0.0indirecta
npmdebug4.4.3indirecta
npmdefaults1.0.4indirecta
npmdegenerator7.0.1indirecta
npmdelayed-stream1.0.0indirecta
npmdunder-proto1.0.1indirecta
npmeasy-table1.1.0indirecta
npmemoji-regex10.6.0indirecta
npmemoji-regex8.0.0indirecta
npmes-define-property1.0.1indirecta
npmes-errors1.3.0indirecta
npmes-object-atoms1.1.1indirecta
npmes-set-tostringtag2.1.0indirecta
npmescalade3.2.0indirecta
npmescape-string-regexp1.0.5indirecta
npmescodegen2.1.0indirecta
npmesprima4.0.1indirecta
npmestraverse5.3.0indirecta
npmesutils2.0.3indirecta
npmfast-safe-stringify2.1.1indirecta
npmfigures3.2.0indirecta
npmfile-type21.3.4indirecta
npmfollow-redirects1.16.0indirecta
npmform-data4.0.6indirecta
npmfs-extra11.3.6indirecta
npmfunction-bind1.1.2indirecta
npmget-caller-file2.0.5indirecta
npmget-east-asian-width1.6.0indirecta
npmget-intrinsic1.3.0indirecta
npmget-proto1.0.1indirecta
npmget-uri8.0.1indirecta
npmglob13.0.6indirecta
npmgopd1.2.0indirecta
npmgraceful-fs4.2.11indirecta
npmhas-flag4.0.0indirecta
npmhas-symbols1.1.0indirecta
npmhas-tostringtag1.0.2indirecta
npmhasown2.0.4indirecta
npmhttp-proxy-agent9.1.0indirecta
npmhttps-proxy-agent5.0.1indirecta
npmhttps-proxy-agent9.1.0indirecta
npmieee7541.2.1indirecta
npmip-address10.2.0indirecta
npmis-fullwidth-code-point3.0.0indirecta
npmiterare1.2.1indirecta
npmjsonfile6.2.1indirecta
npmload-esm1.0.3indirecta
npmlru-cache11.2.7indirecta
npmlru-cache7.18.3indirecta
npmmath-intrinsics1.1.0indirecta
npmmime-db1.52.0indirecta
npmmime-types2.1.35indirecta
npmminimatch10.2.5indirecta
npmminipass7.1.3indirecta
npmms2.1.3indirecta
npmmute-stream1.0.0indirecta
npmnetmask2.1.1indirecta
npmnode-fetch2.7.0indirecta
npmpac-proxy-agent9.1.0indirecta
npmpac-resolver9.0.1indirecta
npmpath-scurry2.0.2indirecta
npmpath-to-regexp8.4.2indirecta
npmproxy-agent8.0.2indirecta
npmproxy-agent-negotiate1.1.0indirecta
npmproxy-from-env2.1.0indirecta
npmquickjs-wasi2.2.0indirecta
npmreflect-metadata0.2.2indirecta
npmrun-async3.0.0indirecta
npmrxjs7.8.2indirecta
npmshell-quote1.8.4indirecta
npmsignal-exit4.1.0indirecta
npmsmart-buffer4.2.0indirecta
npmsocks2.8.9indirecta
npmsocks-proxy-agent10.1.0indirecta
npmsource-map0.6.1indirecta
npmstring-width4.2.3indirecta
npmstring-width7.2.0indirecta
npmstrip-ansi6.0.1indirecta
npmstrip-ansi7.2.0indirecta
npmstrtok310.3.5indirecta
npmsupports-color10.2.2indirecta
npmsupports-color7.2.0indirecta
npmtoken-types6.1.2indirecta
npmtr460.0.3indirecta
npmtree-kill1.2.2indirecta
npmtslib2.8.1indirecta
npmtype-fest0.21.3indirecta
npmuid2.0.2indirecta
npmuint8array-extras1.5.0indirecta
npmundici-types6.21.0indirecta
npmundici-types7.18.2indirecta
npmuniversalify2.0.1indirecta
npmwcwidth1.0.1indirecta
npmwebidl-conversions3.0.1indirecta
npmwhatwg-url5.0.0indirecta
npmwrap-ansi6.2.0indirecta
npmwrap-ansi9.0.2indirecta
npmy18n5.0.8indirecta
npmyargs18.0.0indirecta
npmyargs-parser22.0.0indirecta
PyPIagentic-proteinsindirecta
PyPIaiohappyeyeballs2.6.1indirecta
PyPIaiohttp3.14.1indirecta
PyPIaiosignal1.4.0indirecta
PyPIannotated-doc0.0.4indirecta
PyPIannotated-types0.7.0indirecta
PyPIanyio4.13.0indirecta
PyPIarq0.27.0indirecta
PyPIast-serialize0.3.0indirecta
PyPIasync-timeout5.0.1indirecta
PyPIattrs26.1.0indirecta
PyPIbabel2.18.0indirecta
PyPIbackports-tarfile1.2.0indirecta
PyPIbackports-zstd1.3.0indirecta
PyPIbackrefs6.2indirecta
PyPIbanditindirecta
PyPIbandit1.9.4indirecta
PyPIbijux-proteomics-coreindirecta
PyPIbijux-proteomics-foundationindirecta
PyPIbijux-proteomics-intelligenceindirecta
PyPIbijux-proteomics-knowledgeindirecta
PyPIbijux-proteomics-labindirecta
PyPIbijux-proteomics-runtimeindirecta
PyPIbiopythonindirecta
PyPIbiopython1.87indirecta
PyPIboolean-py5.0indirecta
PyPIbuildindirecta
PyPIbuild1.4.2indirecta
PyPIcachecontrol0.14.4indirecta
PyPIcertifi2026.2.25indirecta
PyPIcffi2.0.0indirecta
PyPIchardet7.4.1indirecta
PyPIcharset-normalizer3.4.7indirecta
PyPIclickindirecta
PyPIclick8.3.2indirecta
PyPIcodespellindirecta
PyPIcodespell2.4.2indirecta
PyPIcolorama0.4.6indirecta
PyPIcoverage7.13.5indirecta
PyPIcryptography49.0.0indirecta
PyPIcyclonedx-python-lib11.7.0indirecta
PyPIdataclasses-json0.6.7indirecta
PyPIdefusedxmlindirecta
PyPIdefusedxml0.7.1indirecta
PyPIdeprecated1.3.1indirecta
PyPIdeptryindirecta
PyPIdeptry0.25.1indirecta
PyPIdistlib0.4.0indirecta
PyPIdistro1.9.0indirecta
PyPIdocutils0.22.4indirecta
PyPIeinopsindirecta
PyPIeinops0.8.2indirecta
PyPIfastapiindirecta
PyPIfastapi0.135.3indirecta
PyPIfilelock3.25.2indirecta
PyPIfrozenlist1.8.0indirecta
PyPIfsspec2026.3.0indirecta
PyPIgemmi0.7.5indirecta
PyPIghp-import2.1.0indirecta
PyPIgitdb4.0.12indirecta
PyPIgitpythonindirecta
PyPIgitpython3.1.50indirecta
PyPIgreenlet3.4.0indirecta
PyPIh110.16.0indirecta
PyPIhatchindirecta
PyPIhatch1.16.5indirecta
PyPIhatch-fancy-pypi-readmeindirecta
PyPIhatch-vcsindirecta
PyPIhatchlingindirecta
PyPIhatchling1.30.1indirecta
PyPIhf-xet1.4.3indirecta
PyPIhiredis3.3.1indirecta
PyPIhttpcore1.0.9indirecta
PyPIhttpxindirecta
PyPIhttpx0.28.1indirecta
PyPIhttpx-sse0.4.3indirecta
PyPIhuggingface-hubindirecta
PyPIhuggingface-hub1.11.0indirecta
PyPIhyperlink21.0.0indirecta
PyPIhypothesisindirecta
PyPIhypothesis6.151.12indirecta
PyPIhypothesis-jsonschema0.23.1indirecta
PyPIid1.6.1indirecta
PyPIidnaindirecta
PyPIidna3.18indirecta
PyPIimmutabledict4.3.1indirecta
PyPIimportlab0.8.1indirecta
PyPIimportlib-metadata9.0.0indirecta
PyPIiniconfig2.3.0indirecta
PyPIinterrogateindirecta
PyPIinterrogate1.7.0indirecta
PyPIjaraco-classes3.4.0indirecta
PyPIjaraco-context6.1.2indirecta
PyPIjaraco-functools4.4.0indirecta
PyPIjeepney0.9.0indirecta
PyPIjinja23.1.6indirecta
PyPIjsonpatch1.33indirecta
PyPIjsonpointer3.1.1indirecta
PyPIjsonschema4.24.1indirecta
PyPIjsonschema-path0.4.5indirecta
PyPIjsonschema-specifications2025.9.1indirecta
PyPIkeyring25.7.0indirecta
PyPIlangchain-classic1.0.7indirecta
PyPIlangchain-communityindirecta
PyPIlangchain-community0.4.1indirecta
PyPIlangchain-coreindirecta
PyPIlangchain-core1.4.0indirecta
PyPIlangchain-huggingfaceindirecta
PyPIlangchain-huggingface1.2.1indirecta
PyPIlangchain-protocol0.0.15indirecta
PyPIlangchain-text-splittersindirecta
PyPIlangchain-text-splitters1.1.2indirecta
PyPIlangsmithindirecta
PyPIlangsmith0.9.3indirecta
PyPIlazy-object-proxy1.12.0indirecta
PyPIlibcst1.8.6indirecta
PyPIlibrt0.11.0indirecta
PyPIlicense-expression30.4.4indirecta
PyPIlimits5.8.0indirecta
PyPIloguruindirecta
PyPIloguru0.7.3indirecta
PyPImando0.7.1indirecta
PyPImarkdown3.10.2indirecta
PyPImarkdown-it-py4.0.0indirecta
PyPImarkupsafe3.0.3indirecta
PyPImarshmallow3.26.2indirecta
PyPImdurl0.1.2indirecta
PyPImergedeep1.3.4indirecta
PyPImkdocsindirecta
PyPImkdocs1.6.1indirecta
PyPImkdocs-autorefsindirecta
PyPImkdocs-autorefs1.4.4indirecta
PyPImkdocs-get-deps0.2.2indirecta
PyPImkdocs-git-revision-date-localized-pluginindirecta
PyPImkdocs-git-revision-date-localized-plugin1.5.1indirecta
PyPImkdocs-materialindirecta
PyPImkdocs-material9.7.6indirecta
PyPImkdocs-material-extensions1.3.1indirecta
PyPImkdocs-redirectsindirecta
PyPImkdocs-redirects1.2.3indirecta
PyPImore-itertools11.0.1indirecta
PyPImsgpackindirecta
PyPImsgpack1.2.1indirecta
PyPImsgspec0.20.0indirecta
PyPImultidict6.7.1indirecta
PyPImypyindirecta
PyPImypy2.1.0indirecta
PyPImypy-extensions1.1.0indirecta
PyPInetworkx3.6.1indirecta
PyPInh30.3.4indirecta
PyPIninja1.13.0indirecta
PyPInodeenv1.10.0indirecta
PyPInumpyindirecta
PyPInumpy1.26.4indirecta
PyPInumpy2.4.4indirecta
PyPIopenapi-schema-validator0.8.1indirecta
PyPIopenapi-spec-validator0.8.4indirecta
PyPIopenprotein-pythonindirecta
PyPIopenprotein-python0.12.1indirecta
PyPIorjson3.11.8indirecta
PyPIpackageurl-python0.17.6indirecta
PyPIpackagingindirecta
PyPIpackaging25.0indirecta
PyPIpaginate0.5.7indirecta
PyPIpandas2.3.3indirecta
PyPIpathable0.5.0indirecta
PyPIpathspec1.0.4indirecta
PyPIpexpect4.9.0indirecta
PyPIpip26.1indirecta
PyPIpip-api0.0.34indirecta
PyPIpip-auditindirecta
PyPIpip-audit2.10.0indirecta
PyPIpip-requirements-parser32.0.1indirecta
PyPIplatformdirs4.9.4indirecta
PyPIpluggy1.6.0indirecta
PyPIprance25.4.8.0indirecta
PyPIpropcache0.4.1indirecta
PyPIproperdocs1.6.7indirecta
PyPIptyprocess0.7.0indirecta
PyPIpy1.11.0indirecta
PyPIpy-cpuinfo9.0.0indirecta
PyPIpy-serializable2.1.0indirecta
PyPIpyarrowindirecta
PyPIpyarrow24.0.0indirecta
PyPIpycnite2024.7.31indirecta
PyPIpycparser3.0indirecta
PyPIpydanticindirecta
PyPIpydantic2.12.5indirecta
PyPIpydantic-core2.41.5indirecta
PyPIpydantic-settings2.14.2indirecta
PyPIpydocstyleindirecta
PyPIpydocstyle6.3.0indirecta
PyPIpydot4.0.1indirecta
PyPIpyfakefs6.1.6indirecta
PyPIpygments2.20.0indirecta
PyPIpyjwt2.13.0indirecta
PyPIpymdown-extensionsindirecta
PyPIpymdown-extensions10.21.3indirecta
PyPIpyparsing3.3.2indirecta
PyPIpyproject-hooks1.2.0indirecta
PyPIpyrightindirecta
PyPIpyright1.1.409indirecta
PyPIpytestindirecta
PyPIpytest9.1.1indirecta
PyPIpytest-asyncioindirecta
PyPIpytest-asyncio1.4.0indirecta
PyPIpytest-benchmarkindirecta
PyPIpytest-benchmark5.2.3indirecta
PyPIpytest-covindirecta
PyPIpytest-cov7.1.0indirecta
PyPIpytest-mock3.15.1indirecta
PyPIpytest-rerunfailures13.0indirecta
PyPIpytest-timeoutindirecta
PyPIpytest-timeout2.4.0indirecta
PyPIpython-dateutil2.9.0.post0indirecta
PyPIpython-discovery1.2.2indirecta
PyPIpython-dotenv1.2.2indirecta
PyPIpytype2024.10.11indirecta
PyPIpytz2026.1.post1indirecta
PyPIpywin32-ctypes0.2.3indirecta
PyPIpyyamlindirecta
PyPIpyyaml6.0.3indirecta
PyPIpyyaml-env-tag1.1indirecta
PyPIpyyaml-ft8.0.0indirecta
PyPIradonindirecta
PyPIradon6.0.1indirecta
PyPIreadme-renderer44.0indirecta
PyPIredis5.3.1indirecta
PyPIreferencing0.37.0indirecta
PyPIregex2026.4.4indirecta
PyPIrequestsindirecta
PyPIrequests2.33.1indirecta
PyPIrequests-toolbelt1.0.0indirecta
PyPIrequirements-parser0.13.0indirecta
PyPIrfc3339-validator0.1.4indirecta
PyPIrfc39862.0.0indirecta
PyPIrich14.3.3indirecta
PyPIrpds-py0.30.0indirecta
PyPIruamel-yaml0.19.1indirecta
PyPIruffindirecta
PyPIruff0.15.9indirecta
PyPIsafetensors0.7.0indirecta
PyPIsecretstorage3.5.0indirecta
PyPIshellingham1.5.4indirecta
PyPIsix1.17.0indirecta
PyPIslowapiindirecta
PyPIslowapi0.1.9indirecta
PyPIsmmap5.0.3indirecta
PyPIsniffio1.3.1indirecta
PyPIsnowballstemmer3.0.1indirecta
PyPIsortedcontainers2.4.0indirecta
PyPIsqlalchemy2.0.49indirecta
PyPIstarletteindirecta
PyPIstarlette1.3.1indirecta
PyPIstevedore5.7.0indirecta
PyPItabulate0.10.0indirecta
PyPItenacity9.1.4indirecta
PyPItokenizersindirecta
PyPItokenizers0.22.2indirecta
PyPItoml0.10.2indirecta
PyPItomli2.4.1indirecta
PyPItomli-w1.2.0indirecta
PyPItomlkit0.14.0indirecta
PyPItorchindirecta
PyPItqdm4.67.3indirecta
PyPItransformersindirecta
PyPItransformers5.5.4indirecta
PyPItrove-classifiers2026.1.14.14indirecta
PyPItwine6.2.0indirecta
PyPItyper0.24.1indirecta
PyPItypes-colorama0.4.15.20260408indirecta
PyPItypes-defusedxmlindirecta
PyPItypes-defusedxml0.7.0.20260408indirecta
PyPItypes-orjson3.6.2indirecta
PyPItypes-pexpect4.9.0.20260408indirecta
PyPItypes-psutil6.1.0.20241221indirecta
PyPItypes-pyyamlindirecta
PyPItypes-pyyaml6.0.12.20260408indirecta
PyPItypes-requestsindirecta
PyPItypes-requests2.33.0.20260408indirecta
PyPItyping-extensions4.15.0indirecta
PyPItyping-inspect0.9.0indirecta
PyPItyping-inspection0.4.2indirecta
PyPItzdata2026.1indirecta
PyPIurllib3indirecta
PyPIurllib32.7.0indirecta
PyPIuserpath1.9.2indirecta
PyPIuuid-utils0.14.1indirecta
PyPIuv0.11.24indirecta
PyPIuvicornindirecta
PyPIuvicorn0.44.0indirecta
PyPIvirtualenv21.2.0indirecta
PyPIvultureindirecta
PyPIvulture2.16indirecta
PyPIwatchdog6.0.0indirecta
PyPIwebsockets16.0indirecta
PyPIwin32-setctime1.2.0indirecta
PyPIwrapt2.1.2indirecta
PyPIxxhash3.6.0indirecta
PyPIyarl1.23.0indirecta
PyPIzipp3.23.0indirecta
PyPIzstandard0.23.0indirecta
Informe JSON sin procesar legible por máquina
{
  "data": {
    "repo": {
      "topics": [],
      "is_fork": false,
      "size_kb": 24616,
      "has_wiki": true,
      "homepage": "http://bijux.io/bijux-proteomics/",
      "languages": {
        "CSS": 65378,
        "HTML": 53279,
        "Shell": 41801,
        "Python": 23197164,
        "Makefile": 282341,
        "JavaScript": 47483
      },
      "pushed_at": "2026-07-10T15:44:38Z",
      "created_at": "2026-01-14T18:16:22Z",
      "owner_type": "User",
      "updated_at": "2026-07-04T21:54:41Z",
      "description": null,
      "is_archived": false,
      "is_disabled": false,
      "license_spdx": "Apache-2.0",
      "default_branch": "main",
      "primary_language": "Python",
      "significant_languages": [
        "Python"
      ]
    },
    "owner": {
      "blog": "https://bijux.io",
      "name": "Bijan Mousavi",
      "type": "User",
      "login": "bijux",
      "company": null,
      "followers": 5,
      "avatar_url": "https://avatars.githubusercontent.com/u/222414480?v=4",
      "created_at": "2025-07-23T11:06:33Z",
      "is_verified": null,
      "public_repos": 12,
      "account_age_days": 357
    },
    "activity": {
      "releases_count": 5,
      "commits_last_year": 6881,
      "latest_release_at": "2026-07-01T10:14:07Z",
      "latest_release_tag": "v0.3.8",
      "releases_from_tags": false,
      "days_since_last_push": 4,
      "active_weeks_last_year": 13,
      "days_since_latest_release": 14,
      "mean_days_between_releases": 20.4
    },
    "community": {
      "has_readme": true,
      "has_license": true,
      "has_description": false,
      "has_contributing": true,
      "health_percentage": 71,
      "has_issue_template": false,
      "has_code_of_conduct": true,
      "has_pull_request_template": false
    },
    "ecosystem": {
      "packages": []
    },
    "popularity": {
      "forks": 0,
      "stars": 2,
      "watchers": 0,
      "open_issues_and_prs": 12
    },
    "ai_readiness": {
      "has_nix": false,
      "example_dirs": [
        "examples"
      ],
      "has_llms_txt": false,
      "has_dockerfile": false,
      "has_mcp_signal": false,
      "bootstrap_files": [
        "Makefile"
      ],
      "api_schema_files": [],
      "has_devcontainer": false,
      "typecheck_configs": [
        "configs/mypy.ini",
        "packages/agentic-proteins/src/agentic_proteins/py.typed",
        "packages/bijux-proteomics-core/src/bijux_proteomics/py.typed",
        "packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed",
        "packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed",
        "packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed",
        "packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed",
        "packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed",
        "packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed",
        "packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed",
        "packages/proteomics-core/src/proteomics_core/py.typed",
        "packages/proteomics-foundation/src/proteomics_foundation/py.typed",
        "packages/proteomics-intelligence/src/proteomics_intelligence/py.typed",
        "packages/proteomics-knowledge/src/proteomics_knowledge/py.typed",
        "packages/proteomics-lab/src/proteomics_lab/py.typed",
        "packages/proteomics-runtime/src/proteomics_runtime/py.typed",
        "packages/proteomics/src/proteomics/py.typed"
      ],
      "largest_source_bytes": 576731,
      "source_files_sampled": 3667,
      "oversized_source_files": 12,
      "agent_instruction_files": [],
      "agent_instruction_max_bytes": null
    },
    "dependencies": {
      "manifests": [
        "configs/package.json",
        "pyproject.toml"
      ],
      "ecosystems": [
        "npm",
        "pypi"
      ],
      "dependencies": [],
      "all_dependencies": {
        "error": null,
        "source": "github-sbom",
        "packages": [
          {
            "name": "@borewit/text-codec",
            "direct": false,
            "version": "0.2.2",
            "ecosystem": "npm"
          },
          {
            "name": "@inquirer/core",
            "direct": false,
            "version": "6.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "@inquirer/select",
            "direct": false,
            "version": "1.3.3",
            "ecosystem": "npm"
          },
          {
            "name": "@inquirer/type",
            "direct": false,
            "version": "1.5.5",
            "ecosystem": "npm"
          },
          {
            "name": "@lukeed/csprng",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "@nestjs/axios",
            "direct": false,
            "version": "4.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "@nestjs/common",
            "direct": false,
            "version": "11.1.27",
            "ecosystem": "npm"
          },
          {
            "name": "@nestjs/core",
            "direct": false,
            "version": "11.1.27",
            "ecosystem": "npm"
          },
          {
            "name": "@nuxtjs/opencollective",
            "direct": false,
            "version": "0.3.2",
            "ecosystem": "npm"
          },
          {
            "name": "@openapitools/openapi-generator-cli",
            "direct": false,
            "version": "2.39.1",
            "ecosystem": "npm"
          },
          {
            "name": "@redocly/cli",
            "direct": false,
            "version": "2.37.0",
            "ecosystem": "npm"
          },
          {
            "name": "@tokenizer/inflate",
            "direct": false,
            "version": "0.4.1",
            "ecosystem": "npm"
          },
          {
            "name": "@tokenizer/token",
            "direct": false,
            "version": "0.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "@types/mute-stream",
            "direct": false,
            "version": "0.0.4",
            "ecosystem": "npm"
          },
          {
            "name": "@types/node",
            "direct": false,
            "version": "20.19.39",
            "ecosystem": "npm"
          },
          {
            "name": "@types/node",
            "direct": false,
            "version": "25.5.2",
            "ecosystem": "npm"
          },
          {
            "name": "@types/wrap-ansi",
            "direct": false,
            "version": "3.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "agent-base",
            "direct": false,
            "version": "6.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "agent-base",
            "direct": false,
            "version": "9.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "ansi-escapes",
            "direct": false,
            "version": "4.3.2",
            "ecosystem": "npm"
          },
          {
            "name": "ansi-regex",
            "direct": false,
            "version": "5.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "ansi-regex",
            "direct": false,
            "version": "6.2.2",
            "ecosystem": "npm"
          },
          {
            "name": "ansi-styles",
            "direct": false,
            "version": "4.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "ansi-styles",
            "direct": false,
            "version": "6.2.3",
            "ecosystem": "npm"
          },
          {
            "name": "ast-types",
            "direct": false,
            "version": "0.13.4",
            "ecosystem": "npm"
          },
          {
            "name": "asynckit",
            "direct": false,
            "version": "0.4.0",
            "ecosystem": "npm"
          },
          {
            "name": "axios",
            "direct": false,
            "version": "1.16.1",
            "ecosystem": "npm"
          },
          {
            "name": "balanced-match",
            "direct": false,
            "version": "4.0.4",
            "ecosystem": "npm"
          },
          {
            "name": "basic-ftp",
            "direct": false,
            "version": "5.3.1",
            "ecosystem": "npm"
          },
          {
            "name": "brace-expansion",
            "direct": false,
            "version": "5.0.6",
            "ecosystem": "npm"
          },
          {
            "name": "call-bind-apply-helpers",
            "direct": false,
            "version": "1.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "chalk",
            "direct": false,
            "version": "4.1.2",
            "ecosystem": "npm"
          },
          {
            "name": "chalk",
            "direct": false,
            "version": "5.6.2",
            "ecosystem": "npm"
          },
          {
            "name": "cli-spinners",
            "direct": false,
            "version": "2.9.2",
            "ecosystem": "npm"
          },
          {
            "name": "cli-width",
            "direct": false,
            "version": "4.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "cliui",
            "direct": false,
            "version": "9.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "clone",
            "direct": false,
            "version": "1.0.4",
            "ecosystem": "npm"
          },
          {
            "name": "color-convert",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "color-name",
            "direct": false,
            "version": "1.1.4",
            "ecosystem": "npm"
          },
          {
            "name": "combined-stream",
            "direct": false,
            "version": "1.0.8",
            "ecosystem": "npm"
          },
          {
            "name": "commander",
            "direct": false,
            "version": "8.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "compare-versions",
            "direct": false,
            "version": "6.1.1",
            "ecosystem": "npm"
          },
          {
            "name": "concurrently",
            "direct": false,
            "version": "10.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "consola",
            "direct": false,
            "version": "2.15.3",
            "ecosystem": "npm"
          },
          {
            "name": "console.table",
            "direct": false,
            "version": "0.10.0",
            "ecosystem": "npm"
          },
          {
            "name": "data-uri-to-buffer",
            "direct": false,
            "version": "8.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "debug",
            "direct": false,
            "version": "4.4.3",
            "ecosystem": "npm"
          },
          {
            "name": "defaults",
            "direct": false,
            "version": "1.0.4",
            "ecosystem": "npm"
          },
          {
            "name": "degenerator",
            "direct": false,
            "version": "7.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "delayed-stream",
            "direct": false,
            "version": "1.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "dunder-proto",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "easy-table",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "emoji-regex",
            "direct": false,
            "version": "10.6.0",
            "ecosystem": "npm"
          },
          {
            "name": "emoji-regex",
            "direct": false,
            "version": "8.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "es-define-property",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "es-errors",
            "direct": false,
            "version": "1.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "es-object-atoms",
            "direct": false,
            "version": "1.1.1",
            "ecosystem": "npm"
          },
          {
            "name": "es-set-tostringtag",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "escalade",
            "direct": false,
            "version": "3.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "escape-string-regexp",
            "direct": false,
            "version": "1.0.5",
            "ecosystem": "npm"
          },
          {
            "name": "escodegen",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "esprima",
            "direct": false,
            "version": "4.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "estraverse",
            "direct": false,
            "version": "5.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "esutils",
            "direct": false,
            "version": "2.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "fast-safe-stringify",
            "direct": false,
            "version": "2.1.1",
            "ecosystem": "npm"
          },
          {
            "name": "figures",
            "direct": false,
            "version": "3.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "file-type",
            "direct": false,
            "version": "21.3.4",
            "ecosystem": "npm"
          },
          {
            "name": "follow-redirects",
            "direct": false,
            "version": "1.16.0",
            "ecosystem": "npm"
          },
          {
            "name": "form-data",
            "direct": false,
            "version": "4.0.6",
            "ecosystem": "npm"
          },
          {
            "name": "fs-extra",
            "direct": false,
            "version": "11.3.6",
            "ecosystem": "npm"
          },
          {
            "name": "function-bind",
            "direct": false,
            "version": "1.1.2",
            "ecosystem": "npm"
          },
          {
            "name": "get-caller-file",
            "direct": false,
            "version": "2.0.5",
            "ecosystem": "npm"
          },
          {
            "name": "get-east-asian-width",
            "direct": false,
            "version": "1.6.0",
            "ecosystem": "npm"
          },
          {
            "name": "get-intrinsic",
            "direct": false,
            "version": "1.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "get-proto",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "get-uri",
            "direct": false,
            "version": "8.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "glob",
            "direct": false,
            "version": "13.0.6",
            "ecosystem": "npm"
          },
          {
            "name": "gopd",
            "direct": false,
            "version": "1.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "graceful-fs",
            "direct": false,
            "version": "4.2.11",
            "ecosystem": "npm"
          },
          {
            "name": "has-flag",
            "direct": false,
            "version": "4.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "has-symbols",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "has-tostringtag",
            "direct": false,
            "version": "1.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "hasown",
            "direct": false,
            "version": "2.0.4",
            "ecosystem": "npm"
          },
          {
            "name": "http-proxy-agent",
            "direct": false,
            "version": "9.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "https-proxy-agent",
            "direct": false,
            "version": "5.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "https-proxy-agent",
            "direct": false,
            "version": "9.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "ieee754",
            "direct": false,
            "version": "1.2.1",
            "ecosystem": "npm"
          },
          {
            "name": "ip-address",
            "direct": false,
            "version": "10.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "is-fullwidth-code-point",
            "direct": false,
            "version": "3.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "iterare",
            "direct": false,
            "version": "1.2.1",
            "ecosystem": "npm"
          },
          {
            "name": "jsonfile",
            "direct": false,
            "version": "6.2.1",
            "ecosystem": "npm"
          },
          {
            "name": "load-esm",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "lru-cache",
            "direct": false,
            "version": "11.2.7",
            "ecosystem": "npm"
          },
          {
            "name": "lru-cache",
            "direct": false,
            "version": "7.18.3",
            "ecosystem": "npm"
          },
          {
            "name": "math-intrinsics",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "mime-db",
            "direct": false,
            "version": "1.52.0",
            "ecosystem": "npm"
          },
          {
            "name": "mime-types",
            "direct": false,
            "version": "2.1.35",
            "ecosystem": "npm"
          },
          {
            "name": "minimatch",
            "direct": false,
            "version": "10.2.5",
            "ecosystem": "npm"
          },
          {
            "name": "minipass",
            "direct": false,
            "version": "7.1.3",
            "ecosystem": "npm"
          },
          {
            "name": "ms",
            "direct": false,
            "version": "2.1.3",
            "ecosystem": "npm"
          },
          {
            "name": "mute-stream",
            "direct": false,
            "version": "1.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "netmask",
            "direct": false,
            "version": "2.1.1",
            "ecosystem": "npm"
          },
          {
            "name": "node-fetch",
            "direct": false,
            "version": "2.7.0",
            "ecosystem": "npm"
          },
          {
            "name": "pac-proxy-agent",
            "direct": false,
            "version": "9.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "pac-resolver",
            "direct": false,
            "version": "9.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "path-scurry",
            "direct": false,
            "version": "2.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "path-to-regexp",
            "direct": false,
            "version": "8.4.2",
            "ecosystem": "npm"
          },
          {
            "name": "proxy-agent",
            "direct": false,
            "version": "8.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "proxy-agent-negotiate",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "proxy-from-env",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "quickjs-wasi",
            "direct": false,
            "version": "2.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "reflect-metadata",
            "direct": false,
            "version": "0.2.2",
            "ecosystem": "npm"
          },
          {
            "name": "run-async",
            "direct": false,
            "version": "3.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "rxjs",
            "direct": false,
            "version": "7.8.2",
            "ecosystem": "npm"
          },
          {
            "name": "shell-quote",
            "direct": false,
            "version": "1.8.4",
            "ecosystem": "npm"
          },
          {
            "name": "signal-exit",
            "direct": false,
            "version": "4.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "smart-buffer",
            "direct": false,
            "version": "4.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "socks",
            "direct": false,
            "version": "2.8.9",
            "ecosystem": "npm"
          },
          {
            "name": "socks-proxy-agent",
            "direct": false,
            "version": "10.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "source-map",
            "direct": false,
            "version": "0.6.1",
            "ecosystem": "npm"
          },
          {
            "name": "string-width",
            "direct": false,
            "version": "4.2.3",
            "ecosystem": "npm"
          },
          {
            "name": "string-width",
            "direct": false,
            "version": "7.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "strip-ansi",
            "direct": false,
            "version": "6.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "strip-ansi",
            "direct": false,
            "version": "7.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "strtok3",
            "direct": false,
            "version": "10.3.5",
            "ecosystem": "npm"
          },
          {
            "name": "supports-color",
            "direct": false,
            "version": "10.2.2",
            "ecosystem": "npm"
          },
          {
            "name": "supports-color",
            "direct": false,
            "version": "7.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "token-types",
            "direct": false,
            "version": "6.1.2",
            "ecosystem": "npm"
          },
          {
            "name": "tr46",
            "direct": false,
            "version": "0.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "tree-kill",
            "direct": false,
            "version": "1.2.2",
            "ecosystem": "npm"
          },
          {
            "name": "tslib",
            "direct": false,
            "version": "2.8.1",
            "ecosystem": "npm"
          },
          {
            "name": "type-fest",
            "direct": false,
            "version": "0.21.3",
            "ecosystem": "npm"
          },
          {
            "name": "uid",
            "direct": false,
            "version": "2.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "uint8array-extras",
            "direct": false,
            "version": "1.5.0",
            "ecosystem": "npm"
          },
          {
            "name": "undici-types",
            "direct": false,
            "version": "6.21.0",
            "ecosystem": "npm"
          },
          {
            "name": "undici-types",
            "direct": false,
            "version": "7.18.2",
            "ecosystem": "npm"
          },
          {
            "name": "universalify",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "wcwidth",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "webidl-conversions",
            "direct": false,
            "version": "3.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "whatwg-url",
            "direct": false,
            "version": "5.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "wrap-ansi",
            "direct": false,
            "version": "6.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "wrap-ansi",
            "direct": false,
            "version": "9.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "y18n",
            "direct": false,
            "version": "5.0.8",
            "ecosystem": "npm"
          },
          {
            "name": "yargs",
            "direct": false,
            "version": "18.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "yargs-parser",
            "direct": false,
            "version": "22.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "agentic-proteins",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "aiohappyeyeballs",
            "direct": false,
            "version": "2.6.1",
            "ecosystem": "pypi"
          },
          {
            "name": "aiohttp",
            "direct": false,
            "version": "3.14.1",
            "ecosystem": "pypi"
          },
          {
            "name": "aiosignal",
            "direct": false,
            "version": "1.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "annotated-doc",
            "direct": false,
            "version": "0.0.4",
            "ecosystem": "pypi"
          },
          {
            "name": "annotated-types",
            "direct": false,
            "version": "0.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "anyio",
            "direct": false,
            "version": "4.13.0",
            "ecosystem": "pypi"
          },
          {
            "name": "arq",
            "direct": false,
            "version": "0.27.0",
            "ecosystem": "pypi"
          },
          {
            "name": "ast-serialize",
            "direct": false,
            "version": "0.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "async-timeout",
            "direct": false,
            "version": "5.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "attrs",
            "direct": false,
            "version": "26.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "babel",
            "direct": false,
            "version": "2.18.0",
            "ecosystem": "pypi"
          },
          {
            "name": "backports-tarfile",
            "direct": false,
            "version": "1.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "backports-zstd",
            "direct": false,
            "version": "1.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "backrefs",
            "direct": false,
            "version": "6.2",
            "ecosystem": "pypi"
          },
          {
            "name": "bandit",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "bandit",
            "direct": false,
            "version": "1.9.4",
            "ecosystem": "pypi"
          },
          {
            "name": "bijux-proteomics-core",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "bijux-proteomics-foundation",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "bijux-proteomics-intelligence",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "bijux-proteomics-knowledge",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "bijux-proteomics-lab",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "bijux-proteomics-runtime",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "biopython",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "biopython",
            "direct": false,
            "version": "1.87",
            "ecosystem": "pypi"
          },
          {
            "name": "boolean-py",
            "direct": false,
            "version": "5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "build",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "build",
            "direct": false,
            "version": "1.4.2",
            "ecosystem": "pypi"
          },
          {
            "name": "cachecontrol",
            "direct": false,
            "version": "0.14.4",
            "ecosystem": "pypi"
          },
          {
            "name": "certifi",
            "direct": false,
            "version": "2026.2.25",
            "ecosystem": "pypi"
          },
          {
            "name": "cffi",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "chardet",
            "direct": false,
            "version": "7.4.1",
            "ecosystem": "pypi"
          },
          {
            "name": "charset-normalizer",
            "direct": false,
            "version": "3.4.7",
            "ecosystem": "pypi"
          },
          {
            "name": "click",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "click",
            "direct": false,
            "version": "8.3.2",
            "ecosystem": "pypi"
          },
          {
            "name": "codespell",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "codespell",
            "direct": false,
            "version": "2.4.2",
            "ecosystem": "pypi"
          },
          {
            "name": "colorama",
            "direct": false,
            "version": "0.4.6",
            "ecosystem": "pypi"
          },
          {
            "name": "coverage",
            "direct": false,
            "version": "7.13.5",
            "ecosystem": "pypi"
          },
          {
            "name": "cryptography",
            "direct": false,
            "version": "49.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "cyclonedx-python-lib",
            "direct": false,
            "version": "11.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "dataclasses-json",
            "direct": false,
            "version": "0.6.7",
            "ecosystem": "pypi"
          },
          {
            "name": "defusedxml",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "defusedxml",
            "direct": false,
            "version": "0.7.1",
            "ecosystem": "pypi"
          },
          {
            "name": "deprecated",
            "direct": false,
            "version": "1.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "deptry",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "deptry",
            "direct": false,
            "version": "0.25.1",
            "ecosystem": "pypi"
          },
          {
            "name": "distlib",
            "direct": false,
            "version": "0.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "distro",
            "direct": false,
            "version": "1.9.0",
            "ecosystem": "pypi"
          },
          {
            "name": "docutils",
            "direct": false,
            "version": "0.22.4",
            "ecosystem": "pypi"
          },
          {
            "name": "einops",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "einops",
            "direct": false,
            "version": "0.8.2",
            "ecosystem": "pypi"
          },
          {
            "name": "fastapi",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "fastapi",
            "direct": false,
            "version": "0.135.3",
            "ecosystem": "pypi"
          },
          {
            "name": "filelock",
            "direct": false,
            "version": "3.25.2",
            "ecosystem": "pypi"
          },
          {
            "name": "frozenlist",
            "direct": false,
            "version": "1.8.0",
            "ecosystem": "pypi"
          },
          {
            "name": "fsspec",
            "direct": false,
            "version": "2026.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "gemmi",
            "direct": false,
            "version": "0.7.5",
            "ecosystem": "pypi"
          },
          {
            "name": "ghp-import",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "gitdb",
            "direct": false,
            "version": "4.0.12",
            "ecosystem": "pypi"
          },
          {
            "name": "gitpython",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "gitpython",
            "direct": false,
            "version": "3.1.50",
            "ecosystem": "pypi"
          },
          {
            "name": "greenlet",
            "direct": false,
            "version": "3.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "h11",
            "direct": false,
            "version": "0.16.0",
            "ecosystem": "pypi"
          },
          {
            "name": "hatch",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "hatch",
            "direct": false,
            "version": "1.16.5",
            "ecosystem": "pypi"
          },
          {
            "name": "hatch-fancy-pypi-readme",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "hatch-vcs",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "hatchling",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "hatchling",
            "direct": false,
            "version": "1.30.1",
            "ecosystem": "pypi"
          },
          {
            "name": "hf-xet",
            "direct": false,
            "version": "1.4.3",
            "ecosystem": "pypi"
          },
          {
            "name": "hiredis",
            "direct": false,
            "version": "3.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "httpcore",
            "direct": false,
            "version": "1.0.9",
            "ecosystem": "pypi"
          },
          {
            "name": "httpx",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "httpx",
            "direct": false,
            "version": "0.28.1",
            "ecosystem": "pypi"
          },
          {
            "name": "httpx-sse",
            "direct": false,
            "version": "0.4.3",
            "ecosystem": "pypi"
          },
          {
            "name": "huggingface-hub",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "huggingface-hub",
            "direct": false,
            "version": "1.11.0",
            "ecosystem": "pypi"
          },
          {
            "name": "hyperlink",
            "direct": false,
            "version": "21.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "hypothesis",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "hypothesis",
            "direct": false,
            "version": "6.151.12",
            "ecosystem": "pypi"
          },
          {
            "name": "hypothesis-jsonschema",
            "direct": false,
            "version": "0.23.1",
            "ecosystem": "pypi"
          },
          {
            "name": "id",
            "direct": false,
            "version": "1.6.1",
            "ecosystem": "pypi"
          },
          {
            "name": "idna",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "idna",
            "direct": false,
            "version": "3.18",
            "ecosystem": "pypi"
          },
          {
            "name": "immutabledict",
            "direct": false,
            "version": "4.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "importlab",
            "direct": false,
            "version": "0.8.1",
            "ecosystem": "pypi"
          },
          {
            "name": "importlib-metadata",
            "direct": false,
            "version": "9.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "iniconfig",
            "direct": false,
            "version": "2.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "interrogate",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "interrogate",
            "direct": false,
            "version": "1.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jaraco-classes",
            "direct": false,
            "version": "3.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jaraco-context",
            "direct": false,
            "version": "6.1.2",
            "ecosystem": "pypi"
          },
          {
            "name": "jaraco-functools",
            "direct": false,
            "version": "4.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jeepney",
            "direct": false,
            "version": "0.9.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jinja2",
            "direct": false,
            "version": "3.1.6",
            "ecosystem": "pypi"
          },
          {
            "name": "jsonpatch",
            "direct": false,
            "version": "1.33",
            "ecosystem": "pypi"
          },
          {
            "name": "jsonpointer",
            "direct": false,
            "version": "3.1.1",
            "ecosystem": "pypi"
          },
          {
            "name": "jsonschema",
            "direct": false,
            "version": "4.24.1",
            "ecosystem": "pypi"
          },
          {
            "name": "jsonschema-path",
            "direct": false,
            "version": "0.4.5",
            "ecosystem": "pypi"
          },
          {
            "name": "jsonschema-specifications",
            "direct": false,
            "version": "2025.9.1",
            "ecosystem": "pypi"
          },
          {
            "name": "keyring",
            "direct": false,
            "version": "25.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-classic",
            "direct": false,
            "version": "1.0.7",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-community",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-community",
            "direct": false,
            "version": "0.4.1",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-core",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-core",
            "direct": false,
            "version": "1.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-huggingface",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-huggingface",
            "direct": false,
            "version": "1.2.1",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-protocol",
            "direct": false,
            "version": "0.0.15",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-text-splitters",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-text-splitters",
            "direct": false,
            "version": "1.1.2",
            "ecosystem": "pypi"
          },
          {
            "name": "langsmith",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "langsmith",
            "direct": false,
            "version": "0.9.3",
            "ecosystem": "pypi"
          },
          {
            "name": "lazy-object-proxy",
            "direct": false,
            "version": "1.12.0",
            "ecosystem": "pypi"
          },
          {
            "name": "libcst",
            "direct": false,
            "version": "1.8.6",
            "ecosystem": "pypi"
          },
          {
            "name": "librt",
            "direct": false,
            "version": "0.11.0",
            "ecosystem": "pypi"
          },
          {
            "name": "license-expression",
            "direct": false,
            "version": "30.4.4",
            "ecosystem": "pypi"
          },
          {
            "name": "limits",
            "direct": false,
            "version": "5.8.0",
            "ecosystem": "pypi"
          },
          {
            "name": "loguru",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "loguru",
            "direct": false,
            "version": "0.7.3",
            "ecosystem": "pypi"
          },
          {
            "name": "mando",
            "direct": false,
            "version": "0.7.1",
            "ecosystem": "pypi"
          },
          {
            "name": "markdown",
            "direct": false,
            "version": "3.10.2",
            "ecosystem": "pypi"
          },
          {
            "name": "markdown-it-py",
            "direct": false,
            "version": "4.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "markupsafe",
            "direct": false,
            "version": "3.0.3",
            "ecosystem": "pypi"
          },
          {
            "name": "marshmallow",
            "direct": false,
            "version": "3.26.2",
            "ecosystem": "pypi"
          },
          {
            "name": "mdurl",
            "direct": false,
            "version": "0.1.2",
            "ecosystem": "pypi"
          },
          {
            "name": "mergedeep",
            "direct": false,
            "version": "1.3.4",
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs",
            "direct": false,
            "version": "1.6.1",
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-autorefs",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-autorefs",
            "direct": false,
            "version": "1.4.4",
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-get-deps",
            "direct": false,
            "version": "0.2.2",
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-git-revision-date-localized-plugin",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-git-revision-date-localized-plugin",
            "direct": false,
            "version": "1.5.1",
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-material",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-material",
            "direct": false,
            "version": "9.7.6",
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-material-extensions",
            "direct": false,
            "version": "1.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-redirects",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-redirects",
            "direct": false,
            "version": "1.2.3",
            "ecosystem": "pypi"
          },
          {
            "name": "more-itertools",
            "direct": false,
            "version": "11.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "msgpack",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "msgpack",
            "direct": false,
            "version": "1.2.1",
            "ecosystem": "pypi"
          },
          {
            "name": "msgspec",
            "direct": false,
            "version": "0.20.0",
            "ecosystem": "pypi"
          },
          {
            "name": "multidict",
            "direct": false,
            "version": "6.7.1",
            "ecosystem": "pypi"
          },
          {
            "name": "mypy",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "mypy",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "mypy-extensions",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "networkx",
            "direct": false,
            "version": "3.6.1",
            "ecosystem": "pypi"
          },
          {
            "name": "nh3",
            "direct": false,
            "version": "0.3.4",
            "ecosystem": "pypi"
          },
          {
            "name": "ninja",
            "direct": false,
            "version": "1.13.0",
            "ecosystem": "pypi"
          },
          {
            "name": "nodeenv",
            "direct": false,
            "version": "1.10.0",
            "ecosystem": "pypi"
          },
          {
            "name": "numpy",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "numpy",
            "direct": false,
            "version": "1.26.4",
            "ecosystem": "pypi"
          },
          {
            "name": "numpy",
            "direct": false,
            "version": "2.4.4",
            "ecosystem": "pypi"
          },
          {
            "name": "openapi-schema-validator",
            "direct": false,
            "version": "0.8.1",
            "ecosystem": "pypi"
          },
          {
            "name": "openapi-spec-validator",
            "direct": false,
            "version": "0.8.4",
            "ecosystem": "pypi"
          },
          {
            "name": "openprotein-python",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "openprotein-python",
            "direct": false,
            "version": "0.12.1",
            "ecosystem": "pypi"
          },
          {
            "name": "orjson",
            "direct": false,
            "version": "3.11.8",
            "ecosystem": "pypi"
          },
          {
            "name": "packageurl-python",
            "direct": false,
            "version": "0.17.6",
            "ecosystem": "pypi"
          },
          {
            "name": "packaging",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "packaging",
            "direct": false,
            "version": "25.0",
            "ecosystem": "pypi"
          },
          {
            "name": "paginate",
            "direct": false,
            "version": "0.5.7",
            "ecosystem": "pypi"
          },
          {
            "name": "pandas",
            "direct": false,
            "version": "2.3.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pathable",
            "direct": false,
            "version": "0.5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pathspec",
            "direct": false,
            "version": "1.0.4",
            "ecosystem": "pypi"
          },
          {
            "name": "pexpect",
            "direct": false,
            "version": "4.9.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pip",
            "direct": false,
            "version": "26.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pip-api",
            "direct": false,
            "version": "0.0.34",
            "ecosystem": "pypi"
          },
          {
            "name": "pip-audit",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pip-audit",
            "direct": false,
            "version": "2.10.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pip-requirements-parser",
            "direct": false,
            "version": "32.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "platformdirs",
            "direct": false,
            "version": "4.9.4",
            "ecosystem": "pypi"
          },
          {
            "name": "pluggy",
            "direct": false,
            "version": "1.6.0",
            "ecosystem": "pypi"
          },
          {
            "name": "prance",
            "direct": false,
            "version": "25.4.8.0",
            "ecosystem": "pypi"
          },
          {
            "name": "propcache",
            "direct": false,
            "version": "0.4.1",
            "ecosystem": "pypi"
          },
          {
            "name": "properdocs",
            "direct": false,
            "version": "1.6.7",
            "ecosystem": "pypi"
          },
          {
            "name": "ptyprocess",
            "direct": false,
            "version": "0.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "py",
            "direct": false,
            "version": "1.11.0",
            "ecosystem": "pypi"
          },
          {
            "name": "py-cpuinfo",
            "direct": false,
            "version": "9.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "py-serializable",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pyarrow",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pyarrow",
            "direct": false,
            "version": "24.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pycnite",
            "direct": false,
            "version": "2024.7.31",
            "ecosystem": "pypi"
          },
          {
            "name": "pycparser",
            "direct": false,
            "version": "3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pydantic",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pydantic",
            "direct": false,
            "version": "2.12.5",
            "ecosystem": "pypi"
          },
          {
            "name": "pydantic-core",
            "direct": false,
            "version": "2.41.5",
            "ecosystem": "pypi"
          },
          {
            "name": "pydantic-settings",
            "direct": false,
            "version": "2.14.2",
            "ecosystem": "pypi"
          },
          {
            "name": "pydocstyle",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pydocstyle",
            "direct": false,
            "version": "6.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pydot",
            "direct": false,
            "version": "4.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pyfakefs",
            "direct": false,
            "version": "6.1.6",
            "ecosystem": "pypi"
          },
          {
            "name": "pygments",
            "direct": false,
            "version": "2.20.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pyjwt",
            "direct": false,
            "version": "2.13.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pymdown-extensions",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pymdown-extensions",
            "direct": false,
            "version": "10.21.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pyparsing",
            "direct": false,
            "version": "3.3.2",
            "ecosystem": "pypi"
          },
          {
            "name": "pyproject-hooks",
            "direct": false,
            "version": "1.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pyright",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pyright",
            "direct": false,
            "version": "1.1.409",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pytest",
            "direct": false,
            "version": "9.1.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-asyncio",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-asyncio",
            "direct": false,
            "version": "1.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-benchmark",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-benchmark",
            "direct": false,
            "version": "5.2.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-cov",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-cov",
            "direct": false,
            "version": "7.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-mock",
            "direct": false,
            "version": "3.15.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-rerunfailures",
            "direct": false,
            "version": "13.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-timeout",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-timeout",
            "direct": false,
            "version": "2.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "python-dateutil",
            "direct": false,
            "version": "2.9.0.post0",
            "ecosystem": "pypi"
          },
          {
            "name": "python-discovery",
            "direct": false,
            "version": "1.2.2",
            "ecosystem": "pypi"
          },
          {
            "name": "python-dotenv",
            "direct": false,
            "version": "1.2.2",
            "ecosystem": "pypi"
          },
          {
            "name": "pytype",
            "direct": false,
            "version": "2024.10.11",
            "ecosystem": "pypi"
          },
          {
            "name": "pytz",
            "direct": false,
            "version": "2026.1.post1",
            "ecosystem": "pypi"
          },
          {
            "name": "pywin32-ctypes",
            "direct": false,
            "version": "0.2.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pyyaml",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pyyaml",
            "direct": false,
            "version": "6.0.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pyyaml-env-tag",
            "direct": false,
            "version": "1.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pyyaml-ft",
            "direct": false,
            "version": "8.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "radon",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "radon",
            "direct": false,
            "version": "6.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "readme-renderer",
            "direct": false,
            "version": "44.0",
            "ecosystem": "pypi"
          },
          {
            "name": "redis",
            "direct": false,
            "version": "5.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "referencing",
            "direct": false,
            "version": "0.37.0",
            "ecosystem": "pypi"
          },
          {
            "name": "regex",
            "direct": false,
            "version": "2026.4.4",
            "ecosystem": "pypi"
          },
          {
            "name": "requests",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "requests",
            "direct": false,
            "version": "2.33.1",
            "ecosystem": "pypi"
          },
          {
            "name": "requests-toolbelt",
            "direct": false,
            "version": "1.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "requirements-parser",
            "direct": false,
            "version": "0.13.0",
            "ecosystem": "pypi"
          },
          {
            "name": "rfc3339-validator",
            "direct": false,
            "version": "0.1.4",
            "ecosystem": "pypi"
          },
          {
            "name": "rfc3986",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "rich",
            "direct": false,
            "version": "14.3.3",
            "ecosystem": "pypi"
          },
          {
            "name": "rpds-py",
            "direct": false,
            "version": "0.30.0",
            "ecosystem": "pypi"
          },
          {
            "name": "ruamel-yaml",
            "direct": false,
            "version": "0.19.1",
            "ecosystem": "pypi"
          },
          {
            "name": "ruff",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "ruff",
            "direct": false,
            "version": "0.15.9",
            "ecosystem": "pypi"
          },
          {
            "name": "safetensors",
            "direct": false,
            "version": "0.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "secretstorage",
            "direct": false,
            "version": "3.5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "shellingham",
            "direct": false,
            "version": "1.5.4",
            "ecosystem": "pypi"
          },
          {
            "name": "six",
            "direct": false,
            "version": "1.17.0",
            "ecosystem": "pypi"
          },
          {
            "name": "slowapi",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "slowapi",
            "direct": false,
            "version": "0.1.9",
            "ecosystem": "pypi"
          },
          {
            "name": "smmap",
            "direct": false,
            "version": "5.0.3",
            "ecosystem": "pypi"
          },
          {
            "name": "sniffio",
            "direct": false,
            "version": "1.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "snowballstemmer",
            "direct": false,
            "version": "3.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "sortedcontainers",
            "direct": false,
            "version": "2.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "sqlalchemy",
            "direct": false,
            "version": "2.0.49",
            "ecosystem": "pypi"
          },
          {
            "name": "starlette",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "starlette",
            "direct": false,
            "version": "1.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "stevedore",
            "direct": false,
            "version": "5.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "tabulate",
            "direct": false,
            "version": "0.10.0",
            "ecosystem": "pypi"
          },
          {
            "name": "tenacity",
            "direct": false,
            "version": "9.1.4",
            "ecosystem": "pypi"
          },
          {
            "name": "tokenizers",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "tokenizers",
            "direct": false,
            "version": "0.22.2",
            "ecosystem": "pypi"
          },
          {
            "name": "toml",
            "direct": false,
            "version": "0.10.2",
            "ecosystem": "pypi"
          },
          {
            "name": "tomli",
            "direct": false,
            "version": "2.4.1",
            "ecosystem": "pypi"
          },
          {
            "name": "tomli-w",
            "direct": false,
            "version": "1.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "tomlkit",
            "direct": false,
            "version": "0.14.0",
            "ecosystem": "pypi"
          },
          {
            "name": "torch",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "tqdm",
            "direct": false,
            "version": "4.67.3",
            "ecosystem": "pypi"
          },
          {
            "name": "transformers",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "transformers",
            "direct": false,
            "version": "5.5.4",
            "ecosystem": "pypi"
          },
          {
            "name": "trove-classifiers",
            "direct": false,
            "version": "2026.1.14.14",
            "ecosystem": "pypi"
          },
          {
            "name": "twine",
            "direct": false,
            "version": "6.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "typer",
            "direct": false,
            "version": "0.24.1",
            "ecosystem": "pypi"
          },
          {
            "name": "types-colorama",
            "direct": false,
            "version": "0.4.15.20260408",
            "ecosystem": "pypi"
          },
          {
            "name": "types-defusedxml",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "types-defusedxml",
            "direct": false,
            "version": "0.7.0.20260408",
            "ecosystem": "pypi"
          },
          {
            "name": "types-orjson",
            "direct": false,
            "version": "3.6.2",
            "ecosystem": "pypi"
          },
          {
            "name": "types-pexpect",
            "direct": false,
            "version": "4.9.0.20260408",
            "ecosystem": "pypi"
          },
          {
            "name": "types-psutil",
            "direct": false,
            "version": "6.1.0.20241221",
            "ecosystem": "pypi"
          },
          {
            "name": "types-pyyaml",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "types-pyyaml",
            "direct": false,
            "version": "6.0.12.20260408",
            "ecosystem": "pypi"
          },
          {
            "name": "types-requests",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "types-requests",
            "direct": false,
            "version": "2.33.0.20260408",
            "ecosystem": "pypi"
          },
          {
            "name": "typing-extensions",
            "direct": false,
            "version": "4.15.0",
            "ecosystem": "pypi"
          },
          {
            "name": "typing-inspect",
            "direct": false,
            "version": "0.9.0",
            "ecosystem": "pypi"
          },
          {
            "name": "typing-inspection",
            "direct": false,
            "version": "0.4.2",
            "ecosystem": "pypi"
          },
          {
            "name": "tzdata",
            "direct": false,
            "version": "2026.1",
            "ecosystem": "pypi"
          },
          {
            "name": "urllib3",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "urllib3",
            "direct": false,
            "version": "2.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "userpath",
            "direct": false,
            "version": "1.9.2",
            "ecosystem": "pypi"
          },
          {
            "name": "uuid-utils",
            "direct": false,
            "version": "0.14.1",
            "ecosystem": "pypi"
          },
          {
            "name": "uv",
            "direct": false,
            "version": "0.11.24",
            "ecosystem": "pypi"
          },
          {
            "name": "uvicorn",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "uvicorn",
            "direct": false,
            "version": "0.44.0",
            "ecosystem": "pypi"
          },
          {
            "name": "virtualenv",
            "direct": false,
            "version": "21.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "vulture",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "vulture",
            "direct": false,
            "version": "2.16",
            "ecosystem": "pypi"
          },
          {
            "name": "watchdog",
            "direct": false,
            "version": "6.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "websockets",
            "direct": false,
            "version": "16.0",
            "ecosystem": "pypi"
          },
          {
            "name": "win32-setctime",
            "direct": false,
            "version": "1.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "wrapt",
            "direct": false,
            "version": "2.1.2",
            "ecosystem": "pypi"
          },
          {
            "name": "xxhash",
            "direct": false,
            "version": "3.6.0",
            "ecosystem": "pypi"
          },
          {
            "name": "yarl",
            "direct": false,
            "version": "1.23.0",
            "ecosystem": "pypi"
          },
          {
            "name": "zipp",
            "direct": false,
            "version": "3.23.0",
            "ecosystem": "pypi"
          },
          {
            "name": "zstandard",
            "direct": false,
            "version": "0.23.0",
            "ecosystem": "pypi"
          }
        ],
        "collected": true,
        "truncated": false,
        "total_count": 447,
        "direct_count": 0,
        "indirect_count": 447
      }
    },
    "maintainership": {
      "issues": {
        "open_prs": 12,
        "merged_prs": 95,
        "open_issues": 0,
        "closed_ratio": null,
        "closed_issues": 0,
        "closed_unmerged_prs": 91
      },
      "bus_factor": 1,
      "top_contributors": [
        {
          "type": "User",
          "login": "bijux",
          "commits": 6845,
          "avatar_url": "https://avatars.githubusercontent.com/u/222414480?u=647e90a042868b52de9c48ddfe64248546a520a2&v=4"
        },
        {
          "type": "Bot",
          "login": "dependabot[bot]",
          "commits": 33,
          "avatar_url": "https://avatars.githubusercontent.com/in/29110?v=4"
        },
        {
          "type": "Bot",
          "login": "github-actions[bot]",
          "commits": 3,
          "avatar_url": "https://avatars.githubusercontent.com/in/15368?v=4"
        }
      ],
      "contributors_sampled": 3,
      "top_contributor_share": 0.995
    },
    "quality_signals": {
      "has_ci": true,
      "has_tests": true,
      "ci_workflows": [
        "automerge-pr.yml",
        "bijux-std.yml",
        "ci.yml",
        "deploy-docs.yml",
        "github-policy.yml",
        "pr-approval-policy.yml",
        "release-artifacts.yml",
        "release-ghcr.yml",
        "release-github.yml",
        "release-pypi.yml",
        "verify.yml"
      ],
      "has_docs_dir": true,
      "linter_configs": [
        "ruff.toml",
        "tox.ini"
      ],
      "has_editorconfig": false,
      "has_linter_config": true,
      "has_precommit_config": false
    },
    "security_signals": {
      "lockfiles": [
        "package-lock.json",
        "uv.lock"
      ],
      "scorecard": {
        "checks": [
          {
            "name": "Binary-Artifacts",
            "score": 10,
            "reason": "no binaries found in the repo",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
          },
          {
            "name": "Branch-Protection",
            "score": 4,
            "reason": "branch protection is not maximal on development and all release branches",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
          },
          {
            "name": "CI-Tests",
            "score": 10,
            "reason": "2 out of 2 merged PRs checked by a CI test -- score normalized to 10",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
          },
          {
            "name": "CII-Best-Practices",
            "score": 0,
            "reason": "no effort to earn an OpenSSF best practices badge detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
          },
          {
            "name": "Code-Review",
            "score": 0,
            "reason": "Found 0/2 approved changesets -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
          },
          {
            "name": "Contributors",
            "score": 0,
            "reason": "project has 0 contributing companies or organizations -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
          },
          {
            "name": "Dangerous-Workflow",
            "score": 10,
            "reason": "no dangerous workflow patterns detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
          },
          {
            "name": "Dependency-Update-Tool",
            "score": 10,
            "reason": "update tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
          },
          {
            "name": "Fuzzing",
            "score": 0,
            "reason": "project is not fuzzed",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
          },
          {
            "name": "License",
            "score": 10,
            "reason": "license file detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
          },
          {
            "name": "Maintained",
            "score": 10,
            "reason": "30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
          },
          {
            "name": "Packaging",
            "score": 10,
            "reason": "packaging workflow detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
          },
          {
            "name": "Pinned-Dependencies",
            "score": 10,
            "reason": "all dependencies are pinned",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
          },
          {
            "name": "SAST",
            "score": 0,
            "reason": "SAST tool is not run on all commits -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
          },
          {
            "name": "Security-Policy",
            "score": 10,
            "reason": "security policy file detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
          },
          {
            "name": "Signed-Releases",
            "score": 0,
            "reason": "Project has not signed or included provenance with any releases.",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
          },
          {
            "name": "Token-Permissions",
            "score": 0,
            "reason": "detected GitHub workflow tokens with excessive permissions",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
          },
          {
            "name": "Vulnerabilities",
            "score": 8,
            "reason": "2 existing vulnerabilities detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
          }
        ],
        "commit": "afca84d79ed54acea16abfa8ff6ce3cb98671d7b",
        "ran_at": "2026-07-15T13:03:25Z",
        "aggregate_score": 5.9,
        "scorecard_version": "v5.5.0"
      },
      "has_codeql_workflow": false,
      "has_security_policy": true,
      "has_dependabot_config": true
    }
  },
  "config": {
    "disabled_metrics": [],
    "disabled_categories": [],
    "disabled_components": {}
  },
  "source": {
    "url": "https://github.com/bijux/bijux-proteomics",
    "host": "github.com",
    "name": "bijux-proteomics",
    "owner": "bijux"
  },
  "metrics": {
    "overall": {
      "key": "overall",
      "band": "moderate",
      "name": "Overall health",
      "note": null,
      "notes": [],
      "value": 57,
      "inputs": {
        "security": 59,
        "vitality": 80,
        "community": 40,
        "governance": 26,
        "engineering": 82
      },
      "components": []
    },
    "categories": [
      {
        "key": "vitality",
        "band": "good",
        "name": "Vitality",
        "value": 80,
        "weight": 0.22,
        "metrics": [
          {
            "key": "development_activity",
            "band": "good",
            "name": "Development activity",
            "note": null,
            "notes": [],
            "value": 73,
            "inputs": {
              "commits_last_year": 6881,
              "human_commit_share": null,
              "days_since_last_push": 4,
              "active_weeks_last_year": 13
            },
            "components": [
              {
                "key": "push_recency",
                "name": "Push recency",
                "detail": "last push 4 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "push_recency",
                    "params": {
                      "days": 4
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_cadence",
                "name": "Commit cadence",
                "detail": "13/52 weeks with commits",
                "points": 9,
                "status": "partial",
                "details": [
                  {
                    "code": "commit_cadence_weeks",
                    "params": {
                      "weeks": 13
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_volume",
                "name": "Commit volume",
                "detail": "6881 commits in the last year",
                "points": 18,
                "status": "met",
                "details": [
                  {
                    "code": "commits_last_year",
                    "params": {
                      "count": 6881
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "openssf_scorecard_maintained",
                "name": "OpenSSF Scorecard: Maintained",
                "detail": "30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "release_discipline",
            "band": "excellent",
            "name": "Release discipline",
            "note": null,
            "notes": [],
            "value": 90,
            "inputs": {
              "releases_count": 5,
              "latest_release_tag": "v0.3.8",
              "releases_from_tags": false,
              "days_since_latest_release": 14,
              "mean_days_between_releases": 20.4
            },
            "components": [
              {
                "key": "ships_releases",
                "name": "Ships releases",
                "detail": "5 releases published",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "releases_published",
                    "params": {
                      "count": 5
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "release_recency",
                "name": "Release recency",
                "detail": "latest release 14 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "release_recency",
                    "params": {
                      "days": 14
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "release_cadence",
                "name": "Release cadence",
                "detail": "a release every ~20.4 days",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "release_cadence",
                    "params": {
                      "gap": 20.4
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "openssf_scorecard_signed_releases",
                "name": "OpenSSF Scorecard: Signed-Releases",
                "detail": "Project has not signed or included provenance with any releases.",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "abandonment",
            "band": "excellent",
            "name": "Abandonment",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "cap": null,
              "state": "unverified",
              "guards": [],
              "signals": [],
              "red_flag": false,
              "multiplier_pct": 100,
              "declared_reason": null,
              "unverified_reason": "no_commit_sample",
              "unanswered_open_prs": null,
              "unanswered_open_issues": null,
              "days_since_last_merged_pr": null,
              "days_since_last_human_commit": null,
              "days_since_last_human_commit_is_floor": false
            },
            "components": [
              {
                "key": "project_is_still_maintained",
                "name": "Project is still maintained",
                "detail": "maintenance record not established from the collected data",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "abandonment_unverified",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Is the project alive — is code being written and are releases shipping?"
      },
      {
        "key": "community",
        "band": "at_risk",
        "name": "Community & Adoption",
        "value": 40,
        "weight": 0.18,
        "metrics": [
          {
            "key": "popularity",
            "band": "critical",
            "name": "Popularity & adoption",
            "note": null,
            "notes": [],
            "value": 1,
            "inputs": {
              "forks": 0,
              "stars": 2,
              "watchers": 0,
              "growth_state": "unverified",
              "growth_factor_pct": 100,
              "growth_unverified_reason": "no_history"
            },
            "components": [
              {
                "key": "stars",
                "name": "Stars",
                "detail": "2 stars",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "stars",
                    "params": {
                      "count": 2
                    }
                  }
                ],
                "max_points": 60
              },
              {
                "key": "forks",
                "name": "Forks",
                "detail": "0 forks",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "forks",
                    "params": {
                      "count": 0
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "watchers",
                "name": "Watchers",
                "detail": "0 watchers",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "watchers",
                    "params": {
                      "count": 0
                    }
                  }
                ],
                "max_points": 15
              }
            ]
          },
          {
            "key": "community_health",
            "band": "excellent",
            "name": "Community health",
            "note": null,
            "notes": [],
            "value": 85,
            "inputs": {
              "has_readme": true,
              "has_license": true,
              "has_contributing": true,
              "has_issue_template": false,
              "has_code_of_conduct": true,
              "has_pull_request_template": false
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 22.5,
                "status": "met",
                "details": [],
                "max_points": 22.5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "recognized license (Apache-2.0)",
                "points": 22.5,
                "status": "met",
                "details": [
                  {
                    "code": "license_standard",
                    "params": {}
                  },
                  {
                    "code": "license_spdx",
                    "params": {
                      "spdx": "Apache-2.0"
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributing_guide",
                "name": "CONTRIBUTING guide",
                "detail": null,
                "points": 18,
                "status": "met",
                "details": [],
                "max_points": 18
              },
              {
                "key": "code_of_conduct",
                "name": "Code of conduct",
                "detail": null,
                "points": 13.5,
                "status": "met",
                "details": [],
                "max_points": 13.5
              },
              {
                "key": "issue_template",
                "name": "Issue template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.2
              },
              {
                "key": "pr_template",
                "name": "PR template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.3
              }
            ]
          }
        ],
        "description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
      },
      {
        "key": "governance",
        "band": "critical",
        "name": "Sustainability & Governance",
        "value": 26,
        "weight": 0.24,
        "metrics": [
          {
            "key": "maintainer_resilience",
            "band": "critical",
            "name": "Maintainer resilience (bus factor)",
            "note": null,
            "notes": [],
            "value": 13,
            "inputs": {
              "bus_factor": 1,
              "contributors_sampled": 3,
              "top_contributor_share": 0.995
            },
            "components": [
              {
                "key": "bus_factor",
                "name": "Bus factor",
                "detail": "1 contributor(s) cover half of all commits",
                "points": 9,
                "status": "partial",
                "details": [
                  {
                    "code": "bus_factor",
                    "params": {
                      "count": 1
                    }
                  }
                ],
                "max_points": 54
              },
              {
                "key": "commit_distribution",
                "name": "Commit distribution",
                "detail": "top contributor authored 100% of commits",
                "points": 0.1,
                "status": "partial",
                "details": [
                  {
                    "code": "top_contributor_share",
                    "params": {
                      "share": 100
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributor_breadth",
                "name": "Contributor breadth",
                "detail": "3 contributors",
                "points": 4.1,
                "status": "partial",
                "details": [
                  {
                    "code": "contributors_sampled",
                    "params": {
                      "count": 3
                    }
                  }
                ],
                "max_points": 13.5
              },
              {
                "key": "openssf_scorecard_contributors",
                "name": "OpenSSF Scorecard: Contributors",
                "detail": "project has 0 contributing companies or organizations -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "responsiveness",
            "band": "at_risk",
            "name": "Issue & PR responsiveness",
            "note": "Excluded from scoring (no data or not applicable): Issue resolution. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "issue_resolution"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 37,
            "inputs": {
              "merged_prs": 95,
              "open_issues": 0,
              "closed_issues": 0,
              "issue_closed_ratio": null,
              "closed_unmerged_prs": 91
            },
            "components": [
              {
                "key": "issue_resolution",
                "name": "Issue resolution",
                "detail": "no issues or no data",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_issues_or_data",
                    "params": {}
                  }
                ],
                "max_points": 46.75
              },
              {
                "key": "pr_acceptance",
                "name": "PR acceptance",
                "detail": "95/186 decided PRs merged",
                "points": 19.5,
                "status": "partial",
                "details": [
                  {
                    "code": "decided_prs_merged",
                    "params": {
                      "merged": 95,
                      "decided": 186
                    }
                  }
                ],
                "max_points": 38.25
              },
              {
                "key": "openssf_scorecard_code_review",
                "name": "OpenSSF Scorecard: Code-Review",
                "detail": "Found 0/2 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              }
            ]
          },
          {
            "key": "stewardship",
            "band": "at_risk",
            "name": "Ownership & stewardship",
            "note": "Excluded from scoring (no data or not applicable): Verified domain. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "verified_domain"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 32,
            "inputs": {
              "followers": 5,
              "owner_type": "User",
              "is_verified": null,
              "owner_login": "bijux",
              "public_repos": 12,
              "account_age_days": 357
            },
            "components": [
              {
                "key": "ownership_backing",
                "name": "Ownership backing",
                "detail": "personal (user) account",
                "points": 10,
                "status": "partial",
                "details": [
                  {
                    "code": "owner_personal",
                    "params": {}
                  }
                ],
                "max_points": 30
              },
              {
                "key": "verified_domain",
                "name": "Verified domain",
                "detail": "not applicable to user accounts",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "not_applicable_to_user_accounts",
                    "params": {}
                  }
                ],
                "max_points": 20
              },
              {
                "key": "owner_reach",
                "name": "Owner reach",
                "detail": "5 followers of bijux",
                "points": 5.6,
                "status": "partial",
                "details": [
                  {
                    "code": "owner_followers",
                    "params": {
                      "count": 5,
                      "login": "bijux"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "track_record",
                "name": "Track record",
                "detail": "12 public repos, account ~0 yr old",
                "points": 10.1,
                "status": "partial",
                "details": [
                  {
                    "code": "public_repos",
                    "params": {
                      "count": 12
                    }
                  },
                  {
                    "code": "account_age_years",
                    "params": {
                      "years": 0
                    }
                  }
                ],
                "max_points": 25
              }
            ]
          }
        ],
        "description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
      },
      {
        "key": "engineering",
        "band": "good",
        "name": "Engineering Quality",
        "value": 82,
        "weight": 0.2,
        "metrics": [
          {
            "key": "engineering_practices",
            "band": "good",
            "name": "Engineering practices",
            "note": null,
            "notes": [],
            "value": 84,
            "inputs": {
              "has_ci": true,
              "has_tests": true,
              "has_editorconfig": false,
              "has_linter_config": true,
              "has_precommit_config": false
            },
            "components": [
              {
                "key": "ci_workflows",
                "name": "CI workflows",
                "detail": "11 workflow(s)",
                "points": 24,
                "status": "met",
                "details": [
                  {
                    "code": "ci_workflows",
                    "params": {
                      "count": 11
                    }
                  }
                ],
                "max_points": 24
              },
              {
                "key": "tests_present",
                "name": "Tests present",
                "detail": null,
                "points": 24,
                "status": "met",
                "details": [],
                "max_points": 24
              },
              {
                "key": "linter_config",
                "name": "Linter config",
                "detail": "ruff.toml, tox.ini",
                "points": 16,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "ruff.toml, tox.ini"
                    }
                  }
                ],
                "max_points": 16
              },
              {
                "key": "pre_commit_hooks",
                "name": "Pre-commit hooks",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 9.6
              },
              {
                "key": "editorconfig",
                "name": ".editorconfig",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.4
              },
              {
                "key": "openssf_scorecard_ci_tests",
                "name": "OpenSSF Scorecard: CI-Tests",
                "detail": "2 out of 2 merged PRs checked by a CI test -- score normalized to 10",
                "points": 20,
                "status": "met",
                "details": [],
                "max_points": 20
              }
            ]
          },
          {
            "key": "documentation",
            "band": "good",
            "name": "Documentation",
            "note": null,
            "notes": [],
            "value": 80,
            "inputs": {
              "topics": [],
              "has_wiki": true,
              "homepage": "http://bijux.io/bijux-proteomics/",
              "has_readme": true,
              "has_docs_dir": true,
              "has_description": false
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 30,
                "status": "met",
                "details": [],
                "max_points": 30
              },
              {
                "key": "documentation_directory",
                "name": "Documentation directory",
                "detail": null,
                "points": 25,
                "status": "met",
                "details": [],
                "max_points": 25
              },
              {
                "key": "documentation_homepage_site",
                "name": "Documentation / homepage site",
                "detail": "http://bijux.io/bijux-proteomics/",
                "points": 15,
                "status": "met",
                "details": [],
                "max_points": 15
              },
              {
                "key": "repository_description",
                "name": "Repository description",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              },
              {
                "key": "topics",
                "name": "Topics",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              },
              {
                "key": "wiki",
                "name": "Wiki",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
      },
      {
        "key": "security",
        "band": "moderate",
        "name": "Security",
        "value": 59,
        "weight": 0.16,
        "metrics": [
          {
            "key": "security_posture",
            "band": "moderate",
            "name": "Security posture",
            "note": null,
            "notes": [],
            "value": 59,
            "inputs": {
              "source": "openssf_scorecard",
              "checks_evaluated": 18,
              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 0,
              "scorecard_aggregate": 5.9
            },
            "components": [
              {
                "key": "binary_artifacts",
                "name": "Binary-Artifacts",
                "detail": "no binaries found in the repo",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "branch protection is not maximal on development and all release branches",
                "points": 3,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "ci_tests",
                "name": "CI-Tests",
                "detail": "2 out of 2 merged PRs checked by a CI test -- score normalized to 10",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "code_review",
                "name": "Code-Review",
                "detail": "Found 0/2 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 0 contributing companies or organizations -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no dangerous workflow patterns detected",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "update tool detected",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow detected",
                "points": 5,
                "status": "met",
                "details": [],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
                "detail": "all dependencies are pinned",
                "points": 5,
                "status": "met",
                "details": [],
                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
                "detail": "SAST tool is not run on all commits -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "security_policy",
                "name": "Security-Policy",
                "detail": "security policy file detected",
                "points": 5,
                "status": "met",
                "details": [],
                "max_points": 5
              },
              {
                "key": "signed_releases",
                "name": "Signed-Releases",
                "detail": "Project has not signed or included provenance with any releases.",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "detected GitHub workflow tokens with excessive permissions",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "2 existing vulnerabilities detected",
                "points": 6,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              }
            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "moderate",
        "name": "AI Readiness",
        "value": 57,
        "weight": 0,
        "metrics": [
          {
            "key": "ai_agent_context",
            "band": "critical",
            "name": "Agent context & guidance",
            "note": "Excluded from scoring (no data or not applicable): Legible commit history. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "legible_commit_history"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 1,
            "inputs": {
              "has_llms_txt": false,
              "legible_history_share": null,
              "agent_instruction_files": [],
              "agent_instruction_max_bytes": null
            },
            "components": [
              {
                "key": "agent_instructions",
                "name": "Agent instructions",
                "detail": "no CLAUDE.md / AGENTS.md / editor rules",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_instructions",
                    "params": {}
                  }
                ],
                "max_points": 45
              },
              {
                "key": "machine_readable_docs_llms_txt",
                "name": "Machine-readable docs (llms.txt)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "legible_commit_history",
                "name": "Legible commit history",
                "detail": "no data",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "ai_verify_loop",
            "band": "excellent",
            "name": "Verify loop (build / test / typecheck)",
            "note": "Excluded from scoring (no data or not applicable): Demonstrated agent practice. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "demonstrated_agent_practice"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 97,
            "inputs": {
              "has_nix": false,
              "has_tests": true,
              "lockfiles": [
                "package-lock.json",
                "uv.lock"
              ],
              "has_dockerfile": false,
              "typed_language": false,
              "bootstrap_files": [
                "Makefile"
              ],
              "has_devcontainer": false,
              "has_linter_config": true,
              "typecheck_configs": [
                "configs/mypy.ini",
                "packages/agentic-proteins/src/agentic_proteins/py.typed",
                "packages/bijux-proteomics-core/src/bijux_proteomics/py.typed",
                "packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed",
                "packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed",
                "packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed",
                "packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed",
                "packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed",
                "packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed",
                "packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed",
                "packages/proteomics-core/src/proteomics_core/py.typed",
                "packages/proteomics-foundation/src/proteomics_foundation/py.typed",
                "packages/proteomics-intelligence/src/proteomics_intelligence/py.typed",
                "packages/proteomics-knowledge/src/proteomics_knowledge/py.typed",
                "packages/proteomics-lab/src/proteomics_lab/py.typed",
                "packages/proteomics-runtime/src/proteomics_runtime/py.typed",
                "packages/proteomics/src/proteomics/py.typed"
              ],
              "agent_commit_share": null,
              "toolchain_manifests": [],
              "dependency_bot_commit_share": 0
            },
            "components": [
              {
                "key": "one_command_bootstrap",
                "name": "One-command bootstrap",
                "detail": "Makefile",
                "points": 18,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "Makefile"
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "automated_tests",
                "name": "Automated tests",
                "detail": null,
                "points": 22,
                "status": "met",
                "details": [],
                "max_points": 22
              },
              {
                "key": "lint_format_config",
                "name": "Lint / format config",
                "detail": "ruff.toml, tox.ini",
                "points": 11,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "ruff.toml, tox.ini"
                    }
                  }
                ],
                "max_points": 11
              },
              {
                "key": "static_type_checking",
                "name": "Static type checking",
                "detail": "configs/mypy.ini, packages/agentic-proteins/src/agentic_proteins/py.typed, packages/bijux-proteomics-core/src/bijux_proteomics/py.typed, packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed, packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed, packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed, packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed, packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed, packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed, packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed, packages/proteomics-core/src/proteomics_core/py.typed, packages/proteomics-foundation/src/proteomics_foundation/py.typed, packages/proteomics-intelligence/src/proteomics_intelligence/py.typed, packages/proteomics-knowledge/src/proteomics_knowledge/py.typed, packages/proteomics-lab/src/proteomics_lab/py.typed, packages/proteomics-runtime/src/proteomics_runtime/py.typed, packages/proteomics/src/proteomics/py.typed",
                "points": 11,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "configs/mypy.ini, packages/agentic-proteins/src/agentic_proteins/py.typed, packages/bijux-proteomics-core/src/bijux_proteomics/py.typed, packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed, packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed, packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed, packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed, packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed, packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed, packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed, packages/proteomics-core/src/proteomics_core/py.typed, packages/proteomics-foundation/src/proteomics_foundation/py.typed, packages/proteomics-intelligence/src/proteomics_intelligence/py.typed, packages/proteomics-knowledge/src/proteomics_knowledge/py.typed, packages/proteomics-lab/src/proteomics_lab/py.typed, packages/proteomics-runtime/src/proteomics_runtime/py.typed, packages/proteomics/src/proteomics/py.typed"
                    }
                  }
                ],
                "max_points": 11
              },
              {
                "key": "reproducible_environment",
                "name": "Reproducible environment",
                "detail": "lockfile",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "lockfile"
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "demonstrated_agent_practice",
                "name": "Demonstrated agent practice",
                "detail": "no data",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 10
              },
              {
                "key": "automated_maintenance",
                "name": "Automated maintenance",
                "detail": "dependency automation configured, none observed in the sampled commits",
                "points": 5,
                "status": "partial",
                "details": [
                  {
                    "code": "dependency_bot_config_only",
                    "params": {}
                  }
                ],
                "max_points": 8
              },
              {
                "key": "openssf_scorecard_pinned_dependencies",
                "name": "OpenSSF Scorecard: Pinned-Dependencies",
                "detail": "all dependencies are pinned",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "ai_code_legibility",
            "band": "good",
            "name": "Code legibility for models",
            "note": null,
            "notes": [],
            "value": 82,
            "inputs": {
              "primary_language": "Python",
              "largest_source_bytes": 576731,
              "source_files_sampled": 3667,
              "oversized_source_files": 12
            },
            "components": [
              {
                "key": "type_checkable_code",
                "name": "Type-checkable code",
                "detail": "Python with type-check config (configs/mypy.ini, packages/agentic-proteins/src/agentic_proteins/py.typed, packages/bijux-proteomics-core/src/bijux_proteomics/py.typed, packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed, packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed, packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed, packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed, packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed, packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed, packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed, packages/proteomics-core/src/proteomics_core/py.typed, packages/proteomics-foundation/src/proteomics_foundation/py.typed, packages/proteomics-intelligence/src/proteomics_intelligence/py.typed, packages/proteomics-knowledge/src/proteomics_knowledge/py.typed, packages/proteomics-lab/src/proteomics_lab/py.typed, packages/proteomics-runtime/src/proteomics_runtime/py.typed, packages/proteomics/src/proteomics/py.typed)",
                "points": 27,
                "status": "partial",
                "details": [
                  {
                    "code": "typecheck_config_language",
                    "params": {
                      "files": "configs/mypy.ini, packages/agentic-proteins/src/agentic_proteins/py.typed, packages/bijux-proteomics-core/src/bijux_proteomics/py.typed, packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed, packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed, packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed, packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed, packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed, packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed, packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed, packages/proteomics-core/src/proteomics_core/py.typed, packages/proteomics-foundation/src/proteomics_foundation/py.typed, packages/proteomics-intelligence/src/proteomics_intelligence/py.typed, packages/proteomics-knowledge/src/proteomics_knowledge/py.typed, packages/proteomics-lab/src/proteomics_lab/py.typed, packages/proteomics-runtime/src/proteomics_runtime/py.typed, packages/proteomics/src/proteomics/py.typed",
                      "language": "Python"
                    }
                  }
                ],
                "max_points": 45
              },
              {
                "key": "manageable_file_sizes",
                "name": "Manageable file sizes",
                "detail": "12/3667 source files over 60KB",
                "points": 54.8,
                "status": "partial",
                "details": [
                  {
                    "code": "oversized_source_files",
                    "params": {
                      "kb": 60,
                      "sampled": 3667,
                      "oversized": 12
                    }
                  }
                ],
                "max_points": 55
              }
            ]
          },
          {
            "key": "ai_interfaces",
            "band": "at_risk",
            "name": "Machine-readable interfaces",
            "note": null,
            "notes": [],
            "value": 40,
            "inputs": {
              "example_dirs": [
                "examples"
              ],
              "has_mcp_signal": false,
              "api_schema_files": []
            },
            "components": [
              {
                "key": "api_schema_openapi_graphql_proto",
                "name": "API schema (OpenAPI/GraphQL/proto)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 40
              },
              {
                "key": "mcp_server",
                "name": "MCP server",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "runnable_examples",
                "name": "Runnable examples",
                "detail": "examples",
                "points": 40,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "examples"
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          }
        ],
        "description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
      }
    ],
    "metrics_version": "1.13.0"
  },
  "warnings": [
    "Could not fetch pypi package 'bijux-proteomics-repository' from its registry"
  ],
  "report_type": "repository",
  "generated_at": "2026-07-15T13:03:42.438752Z",
  "schema_version": "0.11.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/b/bijux/bijux-proteomics.svg",
  "full_name": "bijux/bijux-proteomics",
  "license_state": "standard",
  "license_spdx": "Apache-2.0"
}

Las puntuaciones son señales, no garantías. Reflejan prácticas públicamente visibles en GitHub; no son una auditoría de código ni una garantía de seguridad.

Los datos ausentes se excluyen y los pesos se renormalizan; nunca se puntúan como cero. La metodología es versionada y abierta: métricas v1.13.0, esquema v0.11.0 — metodología completa · wiki de métricas.

Cómo se sitúa un resultado dentro del registro general: estadísticas agregadas.