Звіт про здоров'я програмного забезпеченнясхема 0.11.0 · метрики 1.13.0 · 2026-07-15 13:03 UTC

bijux / bijux-proteomics

PythonApache-2.0★ 2 зірки⑂ 0 форківз січ. 2026 р.Переглянути на GitHub ↗

bijux/bijux-proteomics має індекс здоров’я 57 зі 100, що відповідає смузі «Помірний». Найвищий показник — Engineering Quality (82/100), найнижчий — Sustainability & Governance (26/100). Останнє оновлення було 4 дні тому. Більшість нещодавньої роботи виконує один учасник.

загалом / 100

Помірний

Індекс здоров'я програмного забезпечення

Метрики згруповано у зважені категорії на шкалі 1–100. Загальна оцінка починається як їхнє середнє; коли публічні дані активують Політику юрисдикцій високого ризику, рейтинг коригується й отримує верхню межу 49 («Під ризиком»). Готовність до ШІ не входить до індексу.

Відмінний85-100Зразковий; відповідає практично всім перевіреним критеріям

Добрий70-84Здоровий; незначні прогалини

Помірний50-69Прийнятний, але з помітними прогалинами; рекомендовано перевірку

У зоні ризику30-49Суттєві слабкі місця; впровадження потребує обережності

Критичний1-29Серйозні проблеми (покинутий, єдиний мейнтейнер, без базової гігієни)

Профіль оцінок

Кожна вісь — окрема категорія. Форма важить більше, ніж середнє: здоровий об'єкт заповнює всю фігуру, тоді як профіль із піками та провалами означає, що сила в одному вимірі маскує ризик в іншому.

Власність

Bijan MousaviОсобистий обліковий запис

5 підписників12 публічних репозиторіївз лип. 2025 р.

Цей репозиторій належить особистому обліковому запису. Проєкт з єдиним власником несе більший ризик безперервності, ніж підтримуваний організацією.

Метрики за категоріями

Життєздатність

Чи живий проєкт — чи пишеться код і чи виходять релізи?

80Добрий · 22% загального індексу

Активність розробки

73Добрий

Як обчислюється оцінка

36/36	Свіжість push — останній push 4 дн. тому
9/36	Ритм комітів — 13/52 тижнів із комітами
18/18	Обсяг комітів — 6 881 комітів за останній рік
10/10	OpenSSF Scorecard: Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10

Використані вхідні дані

commits_last_year	6 881
human_commit_share	—
days_since_last_push	4
active_weeks_last_year	13

Дисципліна релізів

90Відмінний

Як обчислюється оцінка

27/27	Випускає релізи — опубліковано 5 релізів
36/36	Свіжість релізів — останній реліз 14 дн. тому
27/27	Ритм релізів — реліз кожні ~20,4 дн.
0/10	OpenSSF Scorecard: Signed-Releases — Project has not signed or included provenance with any releases.

Використані вхідні дані

releases_count	5
latest_release_tag	v0.3.8
releases_from_tags	ні
days_since_latest_release	14
mean_days_between_releases	20,4

Спільнота та впровадження

Чи має проєкт користувачів, завантаження, увагу та влаштовані умови для контриб’юторів?

40У зоні ризику · 18% загального індексу

Здоров'я спільноти

85Відмінний

Як обчислюється оцінка

22.5/22.5	README
22.5/22.5	Ліцензія — визнана ліцензія (Apache-2.0)
18/18	Настанови CONTRIBUTING
13.5/13.5	Кодекс поведінки
0/7.2	Шаблон issue
0/6.3	Шаблон PR

Використані вхідні дані

has_readme	так
has_license	так
has_contributing	так
has_issue_template	ні
has_code_of_conduct	так
has_pull_request_template	ні

Сталість та врядування

Чи переживе проєкт своїх людей — бас-фактор, реактивність, хто за ним стоїть і як супроводжуються пакети?

26Критичний · 24% загального індексу

Стійкість мейнтейнерів (бас-фактор)

13Критичний

Як обчислюється оцінка

9/54	Бас-фактор — на 1 контриб’ютор(ів) припадає половина всіх комітів
0.1/22.5	Розподіл комітів — головний контриб’ютор — автор 100% комітів
4.1/13.5	Широта контриб’юторів — 3 контриб’юторів
0/10	OpenSSF Scorecard: Contributors — project has 0 contributing companies or organizations -- score normalized to 0

Використані вхідні дані

bus_factor	1
contributors_sampled	3
top_contributor_share	0,995

Реактивність на issue та PR

37У зоні ризику

Як обчислюється оцінка

0/46.8	Вирішення issue — немає issue або даних
19.5/38.3	Прийняття PR — злито 95/186 вирішених PR
0/15	OpenSSF Scorecard: Code-Review — Found 0/2 approved changesets -- score normalized to 0

Використані вхідні дані

merged_prs	95
open_issues	0
closed_issues	0
issue_closed_ratio	—
closed_unmerged_prs	91

Виключено з оцінювання (немає даних або не застосовно): Вирішення issue. Залишкові ваги перенормовано.

Власність та опіка

32У зоні ризику

Як обчислюється оцінка

10/30	Підтримка власника — особистий (користувацький) обліковий запис
0/20	Верифікований домен — не застосовно до користувацьких облікових записів
5.6/25	Охоплення власника — 5 підписників у bijux
10.1/25	Послужний список — 12 публічних репозиторіїв, вік облікового запису ~0 р.

Використані вхідні дані

followers	5
owner_type	User
is_verified	—
owner_login	bijux
public_repos	12
account_age_days	357

Виключено з оцінювання (немає даних або не застосовно): Верифікований домен. Залишкові ваги перенормовано.

Інженерна якість

Чи наявні базові інженерні практики та документація?

82Добрий · 20% загального індексу

Інженерні практики

84Добрий

Як обчислюється оцінка

24/24	Процеси CI — 11 процес(ів) CI
24/24	Наявні тести
16/16	Конфігурація лінтера — ruff.toml, tox.ini
0/9.6	Pre-commit-хуки
0/6.4	.editorconfig
20/20	OpenSSF Scorecard: CI-Tests — 2 out of 2 merged PRs checked by a CI test -- score normalized to 10

Використані вхідні дані

has_ci	так
has_tests	так
has_editorconfig	ні
has_linter_config	так
has_precommit_config	ні

Документація

80Добрий

Як обчислюється оцінка

30/30	README
25/25	Каталог документації
15/15	Сайт документації / домашня сторінка — http://bijux.io/bijux-proteomics/
0/10	Опис репозиторію
0/10	Теми
10/10	Wiki

Використані вхідні дані

topics	—
has_wiki	так
homepage	http://bijux.io/bijux-proteomics/
has_readme	так
has_docs_dir	так
has_description	ні

Безпека

Чи міцні видимі практики безпеки й ланцюга постачання, без непослабленої пов’язаності з юрисдикціями високого ризику?

59Помірний · 16% загального індексу

Стан безпеки

59Помірний

Як обчислюється оцінка

7.5/7.5	Binary-Artifacts — no binaries found in the repo
3/7.5	Branch-Protection — branch protection is not maximal on development and all release branches
2.5/2.5	CI-Tests — 2 out of 2 merged PRs checked by a CI test -- score normalized to 10
0/2.5	CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
0/7.5	Code-Review — Found 0/2 approved changesets -- score normalized to 0
0/2.5	Contributors — project has 0 contributing companies or organizations -- score normalized to 0
10/10	Dangerous-Workflow — no dangerous workflow patterns detected
7.5/7.5	Dependency-Update-Tool — update tool detected
0/5	Fuzzing — project is not fuzzed
2.5/2.5	Ліцензія — license file detected
7.5/7.5	Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
5/5	Packaging — packaging workflow detected
5/5	Pinned-Dependencies — all dependencies are pinned
0/5	SAST — SAST tool is not run on all commits -- score normalized to 0
5/5	Security-Policy — security policy file detected
0/7.5	Signed-Releases — Project has not signed or included provenance with any releases.
0/7.5	Token-Permissions — detected GitHub workflow tokens with excessive permissions
6/7.5	Vulnerabilities — 2 existing vulnerabilities detected

Використані вхідні дані

source	openssf_scorecard
checks_evaluated	18
scorecard_version	v5.5.0
checks_inconclusive	0
scorecard_aggregate	5,9

Готовність до ШІ

Наскільки репозиторій оснащений для розробки та супроводу за участі ШІ-агентів? Незалежний, експериментальний бейдж — вага 0.0, тож він подається окремо і не впливає на загальний індекс здоров'я.

57Помірний · 0% загального індексу

Контекст і настанови для агентів

1Критичний

Як обчислюється оцінка

0/45	Інструкції для агентів — немає CLAUDE.md / AGENTS.md / правил редактора
0/15	Машиночитана документація (llms.txt)
0/40	Читабельна історія комітів — немає даних

Використані вхідні дані

has_llms_txt	ні
legible_history_share	—
agent_instruction_files	—
agent_instruction_max_bytes	—

Виключено з оцінювання (немає даних або не застосовно): Читабельна історія комітів. Залишкові ваги перенормовано.

Цикл верифікації (збірка / тести / перевірка типів)

97Відмінний

Як обчислюється оцінка

18/18	Розгортання однією командою — Makefile
22/22	Автоматизовані тести
11/11	Конфігурація лінтера / форматера — ruff.toml, tox.ini
11/11	Статична перевірка типів — configs/mypy.ini, packages/agentic-proteins/src/agentic_proteins/py.typed, packages/bijux-proteomics-core/src/bijux_proteomics/py.typed, packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed, packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed, packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed, packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed, packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed, packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed, packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed, packages/proteomics-core/src/proteomics_core/py.typed, packages/proteomics-foundation/src/proteomics_foundation/py.typed, packages/proteomics-intelligence/src/proteomics_intelligence/py.typed, packages/proteomics-knowledge/src/proteomics_knowledge/py.typed, packages/proteomics-lab/src/proteomics_lab/py.typed, packages/proteomics-runtime/src/proteomics_runtime/py.typed, packages/proteomics/src/proteomics/py.typed
10/10	Відтворюване середовище — lockfile
0/10	Підтверджена практика роботи з агентами — немає даних
5/8	Автоматизоване супроводження — автоматизацію залежностей налаштовано, але у вибірці комітів її не видно
10/10	OpenSSF Scorecard: Pinned-Dependencies — all dependencies are pinned

Використані вхідні дані

has_nix	ні
has_tests	так
lockfiles	package-lock.json, uv.lock
has_dockerfile	ні
typed_language	ні
bootstrap_files	Makefile
has_devcontainer	ні
has_linter_config	так
typecheck_configs	configs/mypy.ini, packages/agentic-proteins/src/agentic_proteins/py.typed, packages/bijux-proteomics-core/src/bijux_proteomics/py.typed, packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed, packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed, packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed, packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed, packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed, packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed, packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed, packages/proteomics-core/src/proteomics_core/py.typed, packages/proteomics-foundation/src/proteomics_foundation/py.typed, packages/proteomics-intelligence/src/proteomics_intelligence/py.typed, packages/proteomics-knowledge/src/proteomics_knowledge/py.typed, packages/proteomics-lab/src/proteomics_lab/py.typed, packages/proteomics-runtime/src/proteomics_runtime/py.typed, packages/proteomics/src/proteomics/py.typed
agent_commit_share	—
toolchain_manifests	—
dependency_bot_commit_share	0

Виключено з оцінювання (немає даних або не застосовно): Підтверджена практика роботи з агентами. Залишкові ваги перенормовано.

Читабельність коду для моделей

82Добрий

Як обчислюється оцінка

27/45

Типізований код — Python з конфігурацією перевірки типів (configs/mypy.ini, packages/agentic-proteins/src/agentic_proteins/py.typed, packages/bijux-proteomics-core/src/bijux_proteomics/py.typed, packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed, packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed, packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed, packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed, packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed, packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed, packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed, packages/proteomics-core/src/proteomics_core/py.typed, packages/proteomics-foundation/src/proteomics_foundation/py.typed, packages/proteomics-intelligence/src/proteomics_intelligence/py.typed, packages/proteomics-knowledge/src/proteomics_knowledge/py.typed, packages/proteomics-lab/src/proteomics_lab/py.typed, packages/proteomics-runtime/src/proteomics_runtime/py.typed, packages/proteomics/src/proteomics/py.typed)

54.8/55

Керовані розміри файлів — 12/3 667 файлів вихідного коду понад 60 КБ

Використані вхідні дані

primary_language	Python
largest_source_bytes	576 731
source_files_sampled	3 667
oversized_source_files	12

Машиночитні інтерфейси

40У зоні ризику

Як обчислюється оцінка

0/40	Схема API (OpenAPI/GraphQL/proto)
0/20	Сервер MCP
40/40	Придатні до запуску приклади — examples

Використані вхідні дані

example_dirs	examples
has_mcp_signal	ні
api_schema_files	—

Ключові факти

2зірок GitHub

3контриб'юторів

6 881комітів за останні 12 місяців

4днів від останнього пушу

5релізів

1бас-фактор

0відкритих issue

npm, PyPIпакетних екосистем

Попередження щодо збору даних

Could not fetch pypi package 'bijux-proteomics-repository' from its registry

Докладніше

OpenSSF Scorecard 5.9 / 10

5.9сукупно

Незалежна, не прив'язана до інструментів оцінка безпеки від відкритого проєкту OpenSSF Scorecard. Кожна перевірка винагороджує практику безпеки, а не інструмент конкретного постачальника. Перевірки, які Scorecard не зміг визначити, позначено н/д і виключено з оцінки безпеки (вони ніколи не зараховуються як нуль).Scorecard v5.5.0 · 2026-07-15 13:03 UTC

10	Binary-Artifacts	no binaries found in the repo
4	Branch-Protection	branch protection is not maximal on development and all release branches
10	CI-Tests	2 out of 2 merged PRs checked by a CI test -- score normalized to 10
0	CII-Best-Practices	no effort to earn an OpenSSF best practices badge detected
0	Code-Review	Found 0/2 approved changesets -- score normalized to 0
0	Contributors	project has 0 contributing companies or organizations -- score normalized to 0
10	Dangerous-Workflow	no dangerous workflow patterns detected
10	Dependency-Update-Tool	update tool detected
0	Fuzzing	project is not fuzzed
10	License	license file detected
10	Maintained	30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
10	Packaging	packaging workflow detected
10	Pinned-Dependencies	all dependencies are pinned
0	SAST	SAST tool is not run on all commits -- score normalized to 0
10	Security-Policy	security policy file detected
0	Signed-Releases	Project has not signed or included provenance with any releases.
0	Token-Permissions	detected GitHub workflow tokens with excessive permissions
8	Vulnerabilities	2 existing vulnerabilities detected

Усі залежності 447

Повний розв'язаний набір залежностей із графа залежностей GitHub: 0 прямих і 447 непрямих (транзитивних) пакетів. Транзитивне замикання є повним, коли в репозиторії закомічено lockfile.

Реєстр	Пакет	Версія	Зв'язок
npm	@borewit/text-codec	`0.2.2`	непряма
npm	@inquirer/core	`6.0.0`	непряма
npm	@inquirer/select	`1.3.3`	непряма
npm	@inquirer/type	`1.5.5`	непряма
npm	@lukeed/csprng	`1.1.0`	непряма
npm	@nestjs/axios	`4.0.1`	непряма
npm	@nestjs/common	`11.1.27`	непряма
npm	@nestjs/core	`11.1.27`	непряма
npm	@nuxtjs/opencollective	`0.3.2`	непряма
npm	@openapitools/openapi-generator-cli	`2.39.1`	непряма
npm	@redocly/cli	`2.37.0`	непряма
npm	@tokenizer/inflate	`0.4.1`	непряма
npm	@tokenizer/token	`0.3.0`	непряма
npm	@types/mute-stream	`0.0.4`	непряма
npm	@types/node	`20.19.39`	непряма
npm	@types/node	`25.5.2`	непряма
npm	@types/wrap-ansi	`3.0.0`	непряма
npm	agent-base	`6.0.2`	непряма
npm	agent-base	`9.0.0`	непряма
npm	ansi-escapes	`4.3.2`	непряма
npm	ansi-regex	`5.0.1`	непряма
npm	ansi-regex	`6.2.2`	непряма
npm	ansi-styles	`4.3.0`	непряма
npm	ansi-styles	`6.2.3`	непряма
npm	ast-types	`0.13.4`	непряма
npm	asynckit	`0.4.0`	непряма
npm	axios	`1.16.1`	непряма
npm	balanced-match	`4.0.4`	непряма
npm	basic-ftp	`5.3.1`	непряма
npm	brace-expansion	`5.0.6`	непряма
npm	call-bind-apply-helpers	`1.0.2`	непряма
npm	chalk	`4.1.2`	непряма
npm	chalk	`5.6.2`	непряма
npm	cli-spinners	`2.9.2`	непряма
npm	cli-width	`4.1.0`	непряма
npm	cliui	`9.0.1`	непряма
npm	clone	`1.0.4`	непряма
npm	color-convert	`2.0.1`	непряма
npm	color-name	`1.1.4`	непряма
npm	combined-stream	`1.0.8`	непряма
npm	commander	`8.3.0`	непряма
npm	compare-versions	`6.1.1`	непряма
npm	concurrently	`10.0.3`	непряма
npm	consola	`2.15.3`	непряма
npm	console.table	`0.10.0`	непряма
npm	data-uri-to-buffer	`8.0.0`	непряма
npm	debug	`4.4.3`	непряма
npm	defaults	`1.0.4`	непряма
npm	degenerator	`7.0.1`	непряма
npm	delayed-stream	`1.0.0`	непряма
npm	dunder-proto	`1.0.1`	непряма
npm	easy-table	`1.1.0`	непряма
npm	emoji-regex	`10.6.0`	непряма
npm	emoji-regex	`8.0.0`	непряма
npm	es-define-property	`1.0.1`	непряма
npm	es-errors	`1.3.0`	непряма
npm	es-object-atoms	`1.1.1`	непряма
npm	es-set-tostringtag	`2.1.0`	непряма
npm	escalade	`3.2.0`	непряма
npm	escape-string-regexp	`1.0.5`	непряма
npm	escodegen	`2.1.0`	непряма
npm	esprima	`4.0.1`	непряма
npm	estraverse	`5.3.0`	непряма
npm	esutils	`2.0.3`	непряма
npm	fast-safe-stringify	`2.1.1`	непряма
npm	figures	`3.2.0`	непряма
npm	file-type	`21.3.4`	непряма
npm	follow-redirects	`1.16.0`	непряма
npm	form-data	`4.0.6`	непряма
npm	fs-extra	`11.3.6`	непряма
npm	function-bind	`1.1.2`	непряма
npm	get-caller-file	`2.0.5`	непряма
npm	get-east-asian-width	`1.6.0`	непряма
npm	get-intrinsic	`1.3.0`	непряма
npm	get-proto	`1.0.1`	непряма
npm	get-uri	`8.0.1`	непряма
npm	glob	`13.0.6`	непряма
npm	gopd	`1.2.0`	непряма
npm	graceful-fs	`4.2.11`	непряма
npm	has-flag	`4.0.0`	непряма
npm	has-symbols	`1.1.0`	непряма
npm	has-tostringtag	`1.0.2`	непряма
npm	hasown	`2.0.4`	непряма
npm	http-proxy-agent	`9.1.0`	непряма
npm	https-proxy-agent	`5.0.1`	непряма
npm	https-proxy-agent	`9.1.0`	непряма
npm	ieee754	`1.2.1`	непряма
npm	ip-address	`10.2.0`	непряма
npm	is-fullwidth-code-point	`3.0.0`	непряма
npm	iterare	`1.2.1`	непряма
npm	jsonfile	`6.2.1`	непряма
npm	load-esm	`1.0.3`	непряма
npm	lru-cache	`11.2.7`	непряма
npm	lru-cache	`7.18.3`	непряма
npm	math-intrinsics	`1.1.0`	непряма
npm	mime-db	`1.52.0`	непряма
npm	mime-types	`2.1.35`	непряма
npm	minimatch	`10.2.5`	непряма
npm	minipass	`7.1.3`	непряма
npm	ms	`2.1.3`	непряма
npm	mute-stream	`1.0.0`	непряма
npm	netmask	`2.1.1`	непряма
npm	node-fetch	`2.7.0`	непряма
npm	pac-proxy-agent	`9.1.0`	непряма
npm	pac-resolver	`9.0.1`	непряма
npm	path-scurry	`2.0.2`	непряма
npm	path-to-regexp	`8.4.2`	непряма
npm	proxy-agent	`8.0.2`	непряма
npm	proxy-agent-negotiate	`1.1.0`	непряма
npm	proxy-from-env	`2.1.0`	непряма
npm	quickjs-wasi	`2.2.0`	непряма
npm	reflect-metadata	`0.2.2`	непряма
npm	run-async	`3.0.0`	непряма
npm	rxjs	`7.8.2`	непряма
npm	shell-quote	`1.8.4`	непряма
npm	signal-exit	`4.1.0`	непряма
npm	smart-buffer	`4.2.0`	непряма
npm	socks	`2.8.9`	непряма
npm	socks-proxy-agent	`10.1.0`	непряма
npm	source-map	`0.6.1`	непряма
npm	string-width	`4.2.3`	непряма
npm	string-width	`7.2.0`	непряма
npm	strip-ansi	`6.0.1`	непряма
npm	strip-ansi	`7.2.0`	непряма
npm	strtok3	`10.3.5`	непряма
npm	supports-color	`10.2.2`	непряма
npm	supports-color	`7.2.0`	непряма
npm	token-types	`6.1.2`	непряма
npm	tr46	`0.0.3`	непряма
npm	tree-kill	`1.2.2`	непряма
npm	tslib	`2.8.1`	непряма
npm	type-fest	`0.21.3`	непряма
npm	uid	`2.0.2`	непряма
npm	uint8array-extras	`1.5.0`	непряма
npm	undici-types	`6.21.0`	непряма
npm	undici-types	`7.18.2`	непряма
npm	universalify	`2.0.1`	непряма
npm	wcwidth	`1.0.1`	непряма
npm	webidl-conversions	`3.0.1`	непряма
npm	whatwg-url	`5.0.0`	непряма
npm	wrap-ansi	`6.2.0`	непряма
npm	wrap-ansi	`9.0.2`	непряма
npm	y18n	`5.0.8`	непряма
npm	yargs	`18.0.0`	непряма
npm	yargs-parser	`22.0.0`	непряма
PyPI	agentic-proteins	`—`	непряма
PyPI	aiohappyeyeballs	`2.6.1`	непряма
PyPI	aiohttp	`3.14.1`	непряма
PyPI	aiosignal	`1.4.0`	непряма
PyPI	annotated-doc	`0.0.4`	непряма
PyPI	annotated-types	`0.7.0`	непряма
PyPI	anyio	`4.13.0`	непряма
PyPI	arq	`0.27.0`	непряма
PyPI	ast-serialize	`0.3.0`	непряма
PyPI	async-timeout	`5.0.1`	непряма
PyPI	attrs	`26.1.0`	непряма
PyPI	babel	`2.18.0`	непряма
PyPI	backports-tarfile	`1.2.0`	непряма
PyPI	backports-zstd	`1.3.0`	непряма
PyPI	backrefs	`6.2`	непряма
PyPI	bandit	`—`	непряма
PyPI	bandit	`1.9.4`	непряма
PyPI	bijux-proteomics-core	`—`	непряма
PyPI	bijux-proteomics-foundation	`—`	непряма
PyPI	bijux-proteomics-intelligence	`—`	непряма
PyPI	bijux-proteomics-knowledge	`—`	непряма
PyPI	bijux-proteomics-lab	`—`	непряма
PyPI	bijux-proteomics-runtime	`—`	непряма
PyPI	biopython	`—`	непряма
PyPI	biopython	`1.87`	непряма
PyPI	boolean-py	`5.0`	непряма
PyPI	build	`—`	непряма
PyPI	build	`1.4.2`	непряма
PyPI	cachecontrol	`0.14.4`	непряма
PyPI	certifi	`2026.2.25`	непряма
PyPI	cffi	`2.0.0`	непряма
PyPI	chardet	`7.4.1`	непряма
PyPI	charset-normalizer	`3.4.7`	непряма
PyPI	click	`—`	непряма
PyPI	click	`8.3.2`	непряма
PyPI	codespell	`—`	непряма
PyPI	codespell	`2.4.2`	непряма
PyPI	colorama	`0.4.6`	непряма
PyPI	coverage	`7.13.5`	непряма
PyPI	cryptography	`49.0.0`	непряма
PyPI	cyclonedx-python-lib	`11.7.0`	непряма
PyPI	dataclasses-json	`0.6.7`	непряма
PyPI	defusedxml	`—`	непряма
PyPI	defusedxml	`0.7.1`	непряма
PyPI	deprecated	`1.3.1`	непряма
PyPI	deptry	`—`	непряма
PyPI	deptry	`0.25.1`	непряма
PyPI	distlib	`0.4.0`	непряма
PyPI	distro	`1.9.0`	непряма
PyPI	docutils	`0.22.4`	непряма
PyPI	einops	`—`	непряма
PyPI	einops	`0.8.2`	непряма
PyPI	fastapi	`—`	непряма
PyPI	fastapi	`0.135.3`	непряма
PyPI	filelock	`3.25.2`	непряма
PyPI	frozenlist	`1.8.0`	непряма
PyPI	fsspec	`2026.3.0`	непряма
PyPI	gemmi	`0.7.5`	непряма
PyPI	ghp-import	`2.1.0`	непряма
PyPI	gitdb	`4.0.12`	непряма
PyPI	gitpython	`—`	непряма
PyPI	gitpython	`3.1.50`	непряма
PyPI	greenlet	`3.4.0`	непряма
PyPI	h11	`0.16.0`	непряма
PyPI	hatch	`—`	непряма
PyPI	hatch	`1.16.5`	непряма
PyPI	hatch-fancy-pypi-readme	`—`	непряма
PyPI	hatch-vcs	`—`	непряма
PyPI	hatchling	`—`	непряма
PyPI	hatchling	`1.30.1`	непряма
PyPI	hf-xet	`1.4.3`	непряма
PyPI	hiredis	`3.3.1`	непряма
PyPI	httpcore	`1.0.9`	непряма
PyPI	httpx	`—`	непряма
PyPI	httpx	`0.28.1`	непряма
PyPI	httpx-sse	`0.4.3`	непряма
PyPI	huggingface-hub	`—`	непряма
PyPI	huggingface-hub	`1.11.0`	непряма
PyPI	hyperlink	`21.0.0`	непряма
PyPI	hypothesis	`—`	непряма
PyPI	hypothesis	`6.151.12`	непряма
PyPI	hypothesis-jsonschema	`0.23.1`	непряма
PyPI	id	`1.6.1`	непряма
PyPI	idna	`—`	непряма
PyPI	idna	`3.18`	непряма
PyPI	immutabledict	`4.3.1`	непряма
PyPI	importlab	`0.8.1`	непряма
PyPI	importlib-metadata	`9.0.0`	непряма
PyPI	iniconfig	`2.3.0`	непряма
PyPI	interrogate	`—`	непряма
PyPI	interrogate	`1.7.0`	непряма
PyPI	jaraco-classes	`3.4.0`	непряма
PyPI	jaraco-context	`6.1.2`	непряма
PyPI	jaraco-functools	`4.4.0`	непряма
PyPI	jeepney	`0.9.0`	непряма
PyPI	jinja2	`3.1.6`	непряма
PyPI	jsonpatch	`1.33`	непряма
PyPI	jsonpointer	`3.1.1`	непряма
PyPI	jsonschema	`4.24.1`	непряма
PyPI	jsonschema-path	`0.4.5`	непряма
PyPI	jsonschema-specifications	`2025.9.1`	непряма
PyPI	keyring	`25.7.0`	непряма
PyPI	langchain-classic	`1.0.7`	непряма
PyPI	langchain-community	`—`	непряма
PyPI	langchain-community	`0.4.1`	непряма
PyPI	langchain-core	`—`	непряма
PyPI	langchain-core	`1.4.0`	непряма
PyPI	langchain-huggingface	`—`	непряма
PyPI	langchain-huggingface	`1.2.1`	непряма
PyPI	langchain-protocol	`0.0.15`	непряма
PyPI	langchain-text-splitters	`—`	непряма
PyPI	langchain-text-splitters	`1.1.2`	непряма
PyPI	langsmith	`—`	непряма
PyPI	langsmith	`0.9.3`	непряма
PyPI	lazy-object-proxy	`1.12.0`	непряма
PyPI	libcst	`1.8.6`	непряма
PyPI	librt	`0.11.0`	непряма
PyPI	license-expression	`30.4.4`	непряма
PyPI	limits	`5.8.0`	непряма
PyPI	loguru	`—`	непряма
PyPI	loguru	`0.7.3`	непряма
PyPI	mando	`0.7.1`	непряма
PyPI	markdown	`3.10.2`	непряма
PyPI	markdown-it-py	`4.0.0`	непряма
PyPI	markupsafe	`3.0.3`	непряма
PyPI	marshmallow	`3.26.2`	непряма
PyPI	mdurl	`0.1.2`	непряма
PyPI	mergedeep	`1.3.4`	непряма
PyPI	mkdocs	`—`	непряма
PyPI	mkdocs	`1.6.1`	непряма
PyPI	mkdocs-autorefs	`—`	непряма
PyPI	mkdocs-autorefs	`1.4.4`	непряма
PyPI	mkdocs-get-deps	`0.2.2`	непряма
PyPI	mkdocs-git-revision-date-localized-plugin	`—`	непряма
PyPI	mkdocs-git-revision-date-localized-plugin	`1.5.1`	непряма
PyPI	mkdocs-material	`—`	непряма
PyPI	mkdocs-material	`9.7.6`	непряма
PyPI	mkdocs-material-extensions	`1.3.1`	непряма
PyPI	mkdocs-redirects	`—`	непряма
PyPI	mkdocs-redirects	`1.2.3`	непряма
PyPI	more-itertools	`11.0.1`	непряма
PyPI	msgpack	`—`	непряма
PyPI	msgpack	`1.2.1`	непряма
PyPI	msgspec	`0.20.0`	непряма
PyPI	multidict	`6.7.1`	непряма
PyPI	mypy	`—`	непряма
PyPI	mypy	`2.1.0`	непряма
PyPI	mypy-extensions	`1.1.0`	непряма
PyPI	networkx	`3.6.1`	непряма
PyPI	nh3	`0.3.4`	непряма
PyPI	ninja	`1.13.0`	непряма
PyPI	nodeenv	`1.10.0`	непряма
PyPI	numpy	`—`	непряма
PyPI	numpy	`1.26.4`	непряма
PyPI	numpy	`2.4.4`	непряма
PyPI	openapi-schema-validator	`0.8.1`	непряма
PyPI	openapi-spec-validator	`0.8.4`	непряма
PyPI	openprotein-python	`—`	непряма
PyPI	openprotein-python	`0.12.1`	непряма
PyPI	orjson	`3.11.8`	непряма
PyPI	packageurl-python	`0.17.6`	непряма
PyPI	packaging	`—`	непряма
PyPI	packaging	`25.0`	непряма
PyPI	paginate	`0.5.7`	непряма
PyPI	pandas	`2.3.3`	непряма
PyPI	pathable	`0.5.0`	непряма
PyPI	pathspec	`1.0.4`	непряма
PyPI	pexpect	`4.9.0`	непряма
PyPI	pip	`26.1`	непряма
PyPI	pip-api	`0.0.34`	непряма
PyPI	pip-audit	`—`	непряма
PyPI	pip-audit	`2.10.0`	непряма
PyPI	pip-requirements-parser	`32.0.1`	непряма
PyPI	platformdirs	`4.9.4`	непряма
PyPI	pluggy	`1.6.0`	непряма
PyPI	prance	`25.4.8.0`	непряма
PyPI	propcache	`0.4.1`	непряма
PyPI	properdocs	`1.6.7`	непряма
PyPI	ptyprocess	`0.7.0`	непряма
PyPI	py	`1.11.0`	непряма
PyPI	py-cpuinfo	`9.0.0`	непряма
PyPI	py-serializable	`2.1.0`	непряма
PyPI	pyarrow	`—`	непряма
PyPI	pyarrow	`24.0.0`	непряма
PyPI	pycnite	`2024.7.31`	непряма
PyPI	pycparser	`3.0`	непряма
PyPI	pydantic	`—`	непряма
PyPI	pydantic	`2.12.5`	непряма
PyPI	pydantic-core	`2.41.5`	непряма
PyPI	pydantic-settings	`2.14.2`	непряма
PyPI	pydocstyle	`—`	непряма
PyPI	pydocstyle	`6.3.0`	непряма
PyPI	pydot	`4.0.1`	непряма
PyPI	pyfakefs	`6.1.6`	непряма
PyPI	pygments	`2.20.0`	непряма
PyPI	pyjwt	`2.13.0`	непряма
PyPI	pymdown-extensions	`—`	непряма
PyPI	pymdown-extensions	`10.21.3`	непряма
PyPI	pyparsing	`3.3.2`	непряма
PyPI	pyproject-hooks	`1.2.0`	непряма
PyPI	pyright	`—`	непряма
PyPI	pyright	`1.1.409`	непряма
PyPI	pytest	`—`	непряма
PyPI	pytest	`9.1.1`	непряма
PyPI	pytest-asyncio	`—`	непряма
PyPI	pytest-asyncio	`1.4.0`	непряма
PyPI	pytest-benchmark	`—`	непряма
PyPI	pytest-benchmark	`5.2.3`	непряма
PyPI	pytest-cov	`—`	непряма
PyPI	pytest-cov	`7.1.0`	непряма
PyPI	pytest-mock	`3.15.1`	непряма
PyPI	pytest-rerunfailures	`13.0`	непряма
PyPI	pytest-timeout	`—`	непряма
PyPI	pytest-timeout	`2.4.0`	непряма
PyPI	python-dateutil	`2.9.0.post0`	непряма
PyPI	python-discovery	`1.2.2`	непряма
PyPI	python-dotenv	`1.2.2`	непряма
PyPI	pytype	`2024.10.11`	непряма
PyPI	pytz	`2026.1.post1`	непряма
PyPI	pywin32-ctypes	`0.2.3`	непряма
PyPI	pyyaml	`—`	непряма
PyPI	pyyaml	`6.0.3`	непряма
PyPI	pyyaml-env-tag	`1.1`	непряма
PyPI	pyyaml-ft	`8.0.0`	непряма
PyPI	radon	`—`	непряма
PyPI	radon	`6.0.1`	непряма
PyPI	readme-renderer	`44.0`	непряма
PyPI	redis	`5.3.1`	непряма
PyPI	referencing	`0.37.0`	непряма
PyPI	regex	`2026.4.4`	непряма
PyPI	requests	`—`	непряма
PyPI	requests	`2.33.1`	непряма
PyPI	requests-toolbelt	`1.0.0`	непряма
PyPI	requirements-parser	`0.13.0`	непряма
PyPI	rfc3339-validator	`0.1.4`	непряма
PyPI	rfc3986	`2.0.0`	непряма
PyPI	rich	`14.3.3`	непряма
PyPI	rpds-py	`0.30.0`	непряма
PyPI	ruamel-yaml	`0.19.1`	непряма
PyPI	ruff	`—`	непряма
PyPI	ruff	`0.15.9`	непряма
PyPI	safetensors	`0.7.0`	непряма
PyPI	secretstorage	`3.5.0`	непряма
PyPI	shellingham	`1.5.4`	непряма
PyPI	six	`1.17.0`	непряма
PyPI	slowapi	`—`	непряма
PyPI	slowapi	`0.1.9`	непряма
PyPI	smmap	`5.0.3`	непряма
PyPI	sniffio	`1.3.1`	непряма
PyPI	snowballstemmer	`3.0.1`	непряма
PyPI	sortedcontainers	`2.4.0`	непряма
PyPI	sqlalchemy	`2.0.49`	непряма
PyPI	starlette	`—`	непряма
PyPI	starlette	`1.3.1`	непряма
PyPI	stevedore	`5.7.0`	непряма
PyPI	tabulate	`0.10.0`	непряма
PyPI	tenacity	`9.1.4`	непряма
PyPI	tokenizers	`—`	непряма
PyPI	tokenizers	`0.22.2`	непряма
PyPI	toml	`0.10.2`	непряма
PyPI	tomli	`2.4.1`	непряма
PyPI	tomli-w	`1.2.0`	непряма
PyPI	tomlkit	`0.14.0`	непряма
PyPI	torch	`—`	непряма
PyPI	tqdm	`4.67.3`	непряма
PyPI	transformers	`—`	непряма
PyPI	transformers	`5.5.4`	непряма
PyPI	trove-classifiers	`2026.1.14.14`	непряма
PyPI	twine	`6.2.0`	непряма
PyPI	typer	`0.24.1`	непряма
PyPI	types-colorama	`0.4.15.20260408`	непряма
PyPI	types-defusedxml	`—`	непряма
PyPI	types-defusedxml	`0.7.0.20260408`	непряма
PyPI	types-orjson	`3.6.2`	непряма
PyPI	types-pexpect	`4.9.0.20260408`	непряма
PyPI	types-psutil	`6.1.0.20241221`	непряма
PyPI	types-pyyaml	`—`	непряма
PyPI	types-pyyaml	`6.0.12.20260408`	непряма
PyPI	types-requests	`—`	непряма
PyPI	types-requests	`2.33.0.20260408`	непряма
PyPI	typing-extensions	`4.15.0`	непряма
PyPI	typing-inspect	`0.9.0`	непряма
PyPI	typing-inspection	`0.4.2`	непряма
PyPI	tzdata	`2026.1`	непряма
PyPI	urllib3	`—`	непряма
PyPI	urllib3	`2.7.0`	непряма
PyPI	userpath	`1.9.2`	непряма
PyPI	uuid-utils	`0.14.1`	непряма
PyPI	uv	`0.11.24`	непряма
PyPI	uvicorn	`—`	непряма
PyPI	uvicorn	`0.44.0`	непряма
PyPI	virtualenv	`21.2.0`	непряма
PyPI	vulture	`—`	непряма
PyPI	vulture	`2.16`	непряма
PyPI	watchdog	`6.0.0`	непряма
PyPI	websockets	`16.0`	непряма
PyPI	win32-setctime	`1.2.0`	непряма
PyPI	wrapt	`2.1.2`	непряма
PyPI	xxhash	`3.6.0`	непряма
PyPI	yarl	`1.23.0`	непряма
PyPI	zipp	`3.23.0`	непряма
PyPI	zstandard	`0.23.0`	непряма

Звіт у форматі JSON машиночитний

{
  "data": {
    "repo": {
      "topics": [],
      "is_fork": false,
      "size_kb": 24616,
      "has_wiki": true,
      "homepage": "http://bijux.io/bijux-proteomics/",
      "languages": {
        "CSS": 65378,
        "HTML": 53279,
        "Shell": 41801,
        "Python": 23197164,
        "Makefile": 282341,
        "JavaScript": 47483
      },
      "pushed_at": "2026-07-10T15:44:38Z",
      "created_at": "2026-01-14T18:16:22Z",
      "owner_type": "User",
      "updated_at": "2026-07-04T21:54:41Z",
      "description": null,
      "is_archived": false,
      "is_disabled": false,
      "license_spdx": "Apache-2.0",
      "default_branch": "main",
      "primary_language": "Python",
      "significant_languages": [
        "Python"
      ]
    },
    "owner": {
      "blog": "https://bijux.io",
      "name": "Bijan Mousavi",
      "type": "User",
      "login": "bijux",
      "company": null,
      "followers": 5,
      "avatar_url": "https://avatars.githubusercontent.com/u/222414480?v=4",
      "created_at": "2025-07-23T11:06:33Z",
      "is_verified": null,
      "public_repos": 12,
      "account_age_days": 357
    },
    "activity": {
      "releases_count": 5,
      "commits_last_year": 6881,
      "latest_release_at": "2026-07-01T10:14:07Z",
      "latest_release_tag": "v0.3.8",
      "releases_from_tags": false,
      "days_since_last_push": 4,
      "active_weeks_last_year": 13,
      "days_since_latest_release": 14,
      "mean_days_between_releases": 20.4
    },
    "community": {
      "has_readme": true,
      "has_license": true,
      "has_description": false,
      "has_contributing": true,
      "health_percentage": 71,
      "has_issue_template": false,
      "has_code_of_conduct": true,
      "has_pull_request_template": false
    },
    "ecosystem": {
      "packages": []
    },
    "popularity": {
      "forks": 0,
      "stars": 2,
      "watchers": 0,
      "open_issues_and_prs": 12
    },
    "ai_readiness": {
      "has_nix": false,
      "example_dirs": [
        "examples"
      ],
      "has_llms_txt": false,
      "has_dockerfile": false,
      "has_mcp_signal": false,
      "bootstrap_files": [
        "Makefile"
      ],
      "api_schema_files": [],
      "has_devcontainer": false,
      "typecheck_configs": [
        "configs/mypy.ini",
        "packages/agentic-proteins/src/agentic_proteins/py.typed",
        "packages/bijux-proteomics-core/src/bijux_proteomics/py.typed",
        "packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed",
        "packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed",
        "packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed",
        "packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed",
        "packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed",
        "packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed",
        "packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed",
        "packages/proteomics-core/src/proteomics_core/py.typed",
        "packages/proteomics-foundation/src/proteomics_foundation/py.typed",
        "packages/proteomics-intelligence/src/proteomics_intelligence/py.typed",
        "packages/proteomics-knowledge/src/proteomics_knowledge/py.typed",
        "packages/proteomics-lab/src/proteomics_lab/py.typed",
        "packages/proteomics-runtime/src/proteomics_runtime/py.typed",
        "packages/proteomics/src/proteomics/py.typed"
      ],
      "largest_source_bytes": 576731,
      "source_files_sampled": 3667,
      "oversized_source_files": 12,
      "agent_instruction_files": [],
      "agent_instruction_max_bytes": null
    },
    "dependencies": {
      "manifests": [
        "configs/package.json",
        "pyproject.toml"
      ],
      "ecosystems": [
        "npm",
        "pypi"
      ],
      "dependencies": [],
      "all_dependencies": {
        "error": null,
        "source": "github-sbom",
        "packages": [
          {
            "name": "@borewit/text-codec",
            "direct": false,
            "version": "0.2.2",
            "ecosystem": "npm"
          },
          {
            "name": "@inquirer/core",
            "direct": false,
            "version": "6.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "@inquirer/select",
            "direct": false,
            "version": "1.3.3",
            "ecosystem": "npm"
          },
          {
            "name": "@inquirer/type",
            "direct": false,
            "version": "1.5.5",
            "ecosystem": "npm"
          },
          {
            "name": "@lukeed/csprng",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "@nestjs/axios",
            "direct": false,
            "version": "4.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "@nestjs/common",
            "direct": false,
            "version": "11.1.27",
            "ecosystem": "npm"
          },
          {
            "name": "@nestjs/core",
            "direct": false,
            "version": "11.1.27",
            "ecosystem": "npm"
          },
          {
            "name": "@nuxtjs/opencollective",
            "direct": false,
            "version": "0.3.2",
            "ecosystem": "npm"
          },
          {
            "name": "@openapitools/openapi-generator-cli",
            "direct": false,
            "version": "2.39.1",
            "ecosystem": "npm"
          },
          {
            "name": "@redocly/cli",
            "direct": false,
            "version": "2.37.0",
            "ecosystem": "npm"
          },
          {
            "name": "@tokenizer/inflate",
            "direct": false,
            "version": "0.4.1",
            "ecosystem": "npm"
          },
          {
            "name": "@tokenizer/token",
            "direct": false,
            "version": "0.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "@types/mute-stream",
            "direct": false,
            "version": "0.0.4",
            "ecosystem": "npm"
          },
          {
            "name": "@types/node",
            "direct": false,
            "version": "20.19.39",
            "ecosystem": "npm"
          },
          {
            "name": "@types/node",
            "direct": false,
            "version": "25.5.2",
            "ecosystem": "npm"
          },
          {
            "name": "@types/wrap-ansi",
            "direct": false,
            "version": "3.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "agent-base",
            "direct": false,
            "version": "6.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "agent-base",
            "direct": false,
            "version": "9.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "ansi-escapes",
            "direct": false,
            "version": "4.3.2",
            "ecosystem": "npm"
          },
          {
            "name": "ansi-regex",
            "direct": false,
            "version": "5.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "ansi-regex",
            "direct": false,
            "version": "6.2.2",
            "ecosystem": "npm"
          },
          {
            "name": "ansi-styles",
            "direct": false,
            "version": "4.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "ansi-styles",
            "direct": false,
            "version": "6.2.3",
            "ecosystem": "npm"
          },
          {
            "name": "ast-types",
            "direct": false,
            "version": "0.13.4",
            "ecosystem": "npm"
          },
          {
            "name": "asynckit",
            "direct": false,
            "version": "0.4.0",
            "ecosystem": "npm"
          },
          {
            "name": "axios",
            "direct": false,
            "version": "1.16.1",
            "ecosystem": "npm"
          },
          {
            "name": "balanced-match",
            "direct": false,
            "version": "4.0.4",
            "ecosystem": "npm"
          },
          {
            "name": "basic-ftp",
            "direct": false,
            "version": "5.3.1",
            "ecosystem": "npm"
          },
          {
            "name": "brace-expansion",
            "direct": false,
            "version": "5.0.6",
            "ecosystem": "npm"
          },
          {
            "name": "call-bind-apply-helpers",
            "direct": false,
            "version": "1.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "chalk",
            "direct": false,
            "version": "4.1.2",
            "ecosystem": "npm"
          },
          {
            "name": "chalk",
            "direct": false,
            "version": "5.6.2",
            "ecosystem": "npm"
          },
          {
            "name": "cli-spinners",
            "direct": false,
            "version": "2.9.2",
            "ecosystem": "npm"
          },
          {
            "name": "cli-width",
            "direct": false,
            "version": "4.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "cliui",
            "direct": false,
            "version": "9.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "clone",
            "direct": false,
            "version": "1.0.4",
            "ecosystem": "npm"
          },
          {
            "name": "color-convert",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "color-name",
            "direct": false,
            "version": "1.1.4",
            "ecosystem": "npm"
          },
          {
            "name": "combined-stream",
            "direct": false,
            "version": "1.0.8",
            "ecosystem": "npm"
          },
          {
            "name": "commander",
            "direct": false,
            "version": "8.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "compare-versions",
            "direct": false,
            "version": "6.1.1",
            "ecosystem": "npm"
          },
          {
            "name": "concurrently",
            "direct": false,
            "version": "10.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "consola",
            "direct": false,
            "version": "2.15.3",
            "ecosystem": "npm"
          },
          {
            "name": "console.table",
            "direct": false,
            "version": "0.10.0",
            "ecosystem": "npm"
          },
          {
            "name": "data-uri-to-buffer",
            "direct": false,
            "version": "8.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "debug",
            "direct": false,
            "version": "4.4.3",
            "ecosystem": "npm"
          },
          {
            "name": "defaults",
            "direct": false,
            "version": "1.0.4",
            "ecosystem": "npm"
          },
          {
            "name": "degenerator",
            "direct": false,
            "version": "7.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "delayed-stream",
            "direct": false,
            "version": "1.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "dunder-proto",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "easy-table",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "emoji-regex",
            "direct": false,
            "version": "10.6.0",
            "ecosystem": "npm"
          },
          {
            "name": "emoji-regex",
            "direct": false,
            "version": "8.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "es-define-property",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "es-errors",
            "direct": false,
            "version": "1.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "es-object-atoms",
            "direct": false,
            "version": "1.1.1",
            "ecosystem": "npm"
          },
          {
            "name": "es-set-tostringtag",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "escalade",
            "direct": false,
            "version": "3.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "escape-string-regexp",
            "direct": false,
            "version": "1.0.5",
            "ecosystem": "npm"
          },
          {
            "name": "escodegen",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "esprima",
            "direct": false,
            "version": "4.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "estraverse",
            "direct": false,
            "version": "5.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "esutils",
            "direct": false,
            "version": "2.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "fast-safe-stringify",
            "direct": false,
            "version": "2.1.1",
            "ecosystem": "npm"
          },
          {
            "name": "figures",
            "direct": false,
            "version": "3.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "file-type",
            "direct": false,
            "version": "21.3.4",
            "ecosystem": "npm"
          },
          {
            "name": "follow-redirects",
            "direct": false,
            "version": "1.16.0",
            "ecosystem": "npm"
          },
          {
            "name": "form-data",
            "direct": false,
            "version": "4.0.6",
            "ecosystem": "npm"
          },
          {
            "name": "fs-extra",
            "direct": false,
            "version": "11.3.6",
            "ecosystem": "npm"
          },
          {
            "name": "function-bind",
            "direct": false,
            "version": "1.1.2",
            "ecosystem": "npm"
          },
          {
            "name": "get-caller-file",
            "direct": false,
            "version": "2.0.5",
            "ecosystem": "npm"
          },
          {
            "name": "get-east-asian-width",
            "direct": false,
            "version": "1.6.0",
            "ecosystem": "npm"
          },
          {
            "name": "get-intrinsic",
            "direct": false,
            "version": "1.3.0",
            "ecosystem": "npm"
          },
          {
            "name": "get-proto",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "get-uri",
            "direct": false,
            "version": "8.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "glob",
            "direct": false,
            "version": "13.0.6",
            "ecosystem": "npm"
          },
          {
            "name": "gopd",
            "direct": false,
            "version": "1.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "graceful-fs",
            "direct": false,
            "version": "4.2.11",
            "ecosystem": "npm"
          },
          {
            "name": "has-flag",
            "direct": false,
            "version": "4.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "has-symbols",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "has-tostringtag",
            "direct": false,
            "version": "1.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "hasown",
            "direct": false,
            "version": "2.0.4",
            "ecosystem": "npm"
          },
          {
            "name": "http-proxy-agent",
            "direct": false,
            "version": "9.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "https-proxy-agent",
            "direct": false,
            "version": "5.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "https-proxy-agent",
            "direct": false,
            "version": "9.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "ieee754",
            "direct": false,
            "version": "1.2.1",
            "ecosystem": "npm"
          },
          {
            "name": "ip-address",
            "direct": false,
            "version": "10.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "is-fullwidth-code-point",
            "direct": false,
            "version": "3.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "iterare",
            "direct": false,
            "version": "1.2.1",
            "ecosystem": "npm"
          },
          {
            "name": "jsonfile",
            "direct": false,
            "version": "6.2.1",
            "ecosystem": "npm"
          },
          {
            "name": "load-esm",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "lru-cache",
            "direct": false,
            "version": "11.2.7",
            "ecosystem": "npm"
          },
          {
            "name": "lru-cache",
            "direct": false,
            "version": "7.18.3",
            "ecosystem": "npm"
          },
          {
            "name": "math-intrinsics",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "mime-db",
            "direct": false,
            "version": "1.52.0",
            "ecosystem": "npm"
          },
          {
            "name": "mime-types",
            "direct": false,
            "version": "2.1.35",
            "ecosystem": "npm"
          },
          {
            "name": "minimatch",
            "direct": false,
            "version": "10.2.5",
            "ecosystem": "npm"
          },
          {
            "name": "minipass",
            "direct": false,
            "version": "7.1.3",
            "ecosystem": "npm"
          },
          {
            "name": "ms",
            "direct": false,
            "version": "2.1.3",
            "ecosystem": "npm"
          },
          {
            "name": "mute-stream",
            "direct": false,
            "version": "1.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "netmask",
            "direct": false,
            "version": "2.1.1",
            "ecosystem": "npm"
          },
          {
            "name": "node-fetch",
            "direct": false,
            "version": "2.7.0",
            "ecosystem": "npm"
          },
          {
            "name": "pac-proxy-agent",
            "direct": false,
            "version": "9.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "pac-resolver",
            "direct": false,
            "version": "9.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "path-scurry",
            "direct": false,
            "version": "2.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "path-to-regexp",
            "direct": false,
            "version": "8.4.2",
            "ecosystem": "npm"
          },
          {
            "name": "proxy-agent",
            "direct": false,
            "version": "8.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "proxy-agent-negotiate",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "proxy-from-env",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "quickjs-wasi",
            "direct": false,
            "version": "2.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "reflect-metadata",
            "direct": false,
            "version": "0.2.2",
            "ecosystem": "npm"
          },
          {
            "name": "run-async",
            "direct": false,
            "version": "3.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "rxjs",
            "direct": false,
            "version": "7.8.2",
            "ecosystem": "npm"
          },
          {
            "name": "shell-quote",
            "direct": false,
            "version": "1.8.4",
            "ecosystem": "npm"
          },
          {
            "name": "signal-exit",
            "direct": false,
            "version": "4.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "smart-buffer",
            "direct": false,
            "version": "4.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "socks",
            "direct": false,
            "version": "2.8.9",
            "ecosystem": "npm"
          },
          {
            "name": "socks-proxy-agent",
            "direct": false,
            "version": "10.1.0",
            "ecosystem": "npm"
          },
          {
            "name": "source-map",
            "direct": false,
            "version": "0.6.1",
            "ecosystem": "npm"
          },
          {
            "name": "string-width",
            "direct": false,
            "version": "4.2.3",
            "ecosystem": "npm"
          },
          {
            "name": "string-width",
            "direct": false,
            "version": "7.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "strip-ansi",
            "direct": false,
            "version": "6.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "strip-ansi",
            "direct": false,
            "version": "7.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "strtok3",
            "direct": false,
            "version": "10.3.5",
            "ecosystem": "npm"
          },
          {
            "name": "supports-color",
            "direct": false,
            "version": "10.2.2",
            "ecosystem": "npm"
          },
          {
            "name": "supports-color",
            "direct": false,
            "version": "7.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "token-types",
            "direct": false,
            "version": "6.1.2",
            "ecosystem": "npm"
          },
          {
            "name": "tr46",
            "direct": false,
            "version": "0.0.3",
            "ecosystem": "npm"
          },
          {
            "name": "tree-kill",
            "direct": false,
            "version": "1.2.2",
            "ecosystem": "npm"
          },
          {
            "name": "tslib",
            "direct": false,
            "version": "2.8.1",
            "ecosystem": "npm"
          },
          {
            "name": "type-fest",
            "direct": false,
            "version": "0.21.3",
            "ecosystem": "npm"
          },
          {
            "name": "uid",
            "direct": false,
            "version": "2.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "uint8array-extras",
            "direct": false,
            "version": "1.5.0",
            "ecosystem": "npm"
          },
          {
            "name": "undici-types",
            "direct": false,
            "version": "6.21.0",
            "ecosystem": "npm"
          },
          {
            "name": "undici-types",
            "direct": false,
            "version": "7.18.2",
            "ecosystem": "npm"
          },
          {
            "name": "universalify",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "wcwidth",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "webidl-conversions",
            "direct": false,
            "version": "3.0.1",
            "ecosystem": "npm"
          },
          {
            "name": "whatwg-url",
            "direct": false,
            "version": "5.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "wrap-ansi",
            "direct": false,
            "version": "6.2.0",
            "ecosystem": "npm"
          },
          {
            "name": "wrap-ansi",
            "direct": false,
            "version": "9.0.2",
            "ecosystem": "npm"
          },
          {
            "name": "y18n",
            "direct": false,
            "version": "5.0.8",
            "ecosystem": "npm"
          },
          {
            "name": "yargs",
            "direct": false,
            "version": "18.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "yargs-parser",
            "direct": false,
            "version": "22.0.0",
            "ecosystem": "npm"
          },
          {
            "name": "agentic-proteins",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "aiohappyeyeballs",
            "direct": false,
            "version": "2.6.1",
            "ecosystem": "pypi"
          },
          {
            "name": "aiohttp",
            "direct": false,
            "version": "3.14.1",
            "ecosystem": "pypi"
          },
          {
            "name": "aiosignal",
            "direct": false,
            "version": "1.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "annotated-doc",
            "direct": false,
            "version": "0.0.4",
            "ecosystem": "pypi"
          },
          {
            "name": "annotated-types",
            "direct": false,
            "version": "0.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "anyio",
            "direct": false,
            "version": "4.13.0",
            "ecosystem": "pypi"
          },
          {
            "name": "arq",
            "direct": false,
            "version": "0.27.0",
            "ecosystem": "pypi"
          },
          {
            "name": "ast-serialize",
            "direct": false,
            "version": "0.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "async-timeout",
            "direct": false,
            "version": "5.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "attrs",
            "direct": false,
            "version": "26.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "babel",
            "direct": false,
            "version": "2.18.0",
            "ecosystem": "pypi"
          },
          {
            "name": "backports-tarfile",
            "direct": false,
            "version": "1.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "backports-zstd",
            "direct": false,
            "version": "1.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "backrefs",
            "direct": false,
            "version": "6.2",
            "ecosystem": "pypi"
          },
          {
            "name": "bandit",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "bandit",
            "direct": false,
            "version": "1.9.4",
            "ecosystem": "pypi"
          },
          {
            "name": "bijux-proteomics-core",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "bijux-proteomics-foundation",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "bijux-proteomics-intelligence",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "bijux-proteomics-knowledge",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "bijux-proteomics-lab",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "bijux-proteomics-runtime",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "biopython",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "biopython",
            "direct": false,
            "version": "1.87",
            "ecosystem": "pypi"
          },
          {
            "name": "boolean-py",
            "direct": false,
            "version": "5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "build",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "build",
            "direct": false,
            "version": "1.4.2",
            "ecosystem": "pypi"
          },
          {
            "name": "cachecontrol",
            "direct": false,
            "version": "0.14.4",
            "ecosystem": "pypi"
          },
          {
            "name": "certifi",
            "direct": false,
            "version": "2026.2.25",
            "ecosystem": "pypi"
          },
          {
            "name": "cffi",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "chardet",
            "direct": false,
            "version": "7.4.1",
            "ecosystem": "pypi"
          },
          {
            "name": "charset-normalizer",
            "direct": false,
            "version": "3.4.7",
            "ecosystem": "pypi"
          },
          {
            "name": "click",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "click",
            "direct": false,
            "version": "8.3.2",
            "ecosystem": "pypi"
          },
          {
            "name": "codespell",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "codespell",
            "direct": false,
            "version": "2.4.2",
            "ecosystem": "pypi"
          },
          {
            "name": "colorama",
            "direct": false,
            "version": "0.4.6",
            "ecosystem": "pypi"
          },
          {
            "name": "coverage",
            "direct": false,
            "version": "7.13.5",
            "ecosystem": "pypi"
          },
          {
            "name": "cryptography",
            "direct": false,
            "version": "49.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "cyclonedx-python-lib",
            "direct": false,
            "version": "11.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "dataclasses-json",
            "direct": false,
            "version": "0.6.7",
            "ecosystem": "pypi"
          },
          {
            "name": "defusedxml",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "defusedxml",
            "direct": false,
            "version": "0.7.1",
            "ecosystem": "pypi"
          },
          {
            "name": "deprecated",
            "direct": false,
            "version": "1.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "deptry",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "deptry",
            "direct": false,
            "version": "0.25.1",
            "ecosystem": "pypi"
          },
          {
            "name": "distlib",
            "direct": false,
            "version": "0.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "distro",
            "direct": false,
            "version": "1.9.0",
            "ecosystem": "pypi"
          },
          {
            "name": "docutils",
            "direct": false,
            "version": "0.22.4",
            "ecosystem": "pypi"
          },
          {
            "name": "einops",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "einops",
            "direct": false,
            "version": "0.8.2",
            "ecosystem": "pypi"
          },
          {
            "name": "fastapi",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "fastapi",
            "direct": false,
            "version": "0.135.3",
            "ecosystem": "pypi"
          },
          {
            "name": "filelock",
            "direct": false,
            "version": "3.25.2",
            "ecosystem": "pypi"
          },
          {
            "name": "frozenlist",
            "direct": false,
            "version": "1.8.0",
            "ecosystem": "pypi"
          },
          {
            "name": "fsspec",
            "direct": false,
            "version": "2026.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "gemmi",
            "direct": false,
            "version": "0.7.5",
            "ecosystem": "pypi"
          },
          {
            "name": "ghp-import",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "gitdb",
            "direct": false,
            "version": "4.0.12",
            "ecosystem": "pypi"
          },
          {
            "name": "gitpython",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "gitpython",
            "direct": false,
            "version": "3.1.50",
            "ecosystem": "pypi"
          },
          {
            "name": "greenlet",
            "direct": false,
            "version": "3.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "h11",
            "direct": false,
            "version": "0.16.0",
            "ecosystem": "pypi"
          },
          {
            "name": "hatch",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "hatch",
            "direct": false,
            "version": "1.16.5",
            "ecosystem": "pypi"
          },
          {
            "name": "hatch-fancy-pypi-readme",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "hatch-vcs",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "hatchling",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "hatchling",
            "direct": false,
            "version": "1.30.1",
            "ecosystem": "pypi"
          },
          {
            "name": "hf-xet",
            "direct": false,
            "version": "1.4.3",
            "ecosystem": "pypi"
          },
          {
            "name": "hiredis",
            "direct": false,
            "version": "3.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "httpcore",
            "direct": false,
            "version": "1.0.9",
            "ecosystem": "pypi"
          },
          {
            "name": "httpx",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "httpx",
            "direct": false,
            "version": "0.28.1",
            "ecosystem": "pypi"
          },
          {
            "name": "httpx-sse",
            "direct": false,
            "version": "0.4.3",
            "ecosystem": "pypi"
          },
          {
            "name": "huggingface-hub",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "huggingface-hub",
            "direct": false,
            "version": "1.11.0",
            "ecosystem": "pypi"
          },
          {
            "name": "hyperlink",
            "direct": false,
            "version": "21.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "hypothesis",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "hypothesis",
            "direct": false,
            "version": "6.151.12",
            "ecosystem": "pypi"
          },
          {
            "name": "hypothesis-jsonschema",
            "direct": false,
            "version": "0.23.1",
            "ecosystem": "pypi"
          },
          {
            "name": "id",
            "direct": false,
            "version": "1.6.1",
            "ecosystem": "pypi"
          },
          {
            "name": "idna",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "idna",
            "direct": false,
            "version": "3.18",
            "ecosystem": "pypi"
          },
          {
            "name": "immutabledict",
            "direct": false,
            "version": "4.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "importlab",
            "direct": false,
            "version": "0.8.1",
            "ecosystem": "pypi"
          },
          {
            "name": "importlib-metadata",
            "direct": false,
            "version": "9.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "iniconfig",
            "direct": false,
            "version": "2.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "interrogate",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "interrogate",
            "direct": false,
            "version": "1.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jaraco-classes",
            "direct": false,
            "version": "3.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jaraco-context",
            "direct": false,
            "version": "6.1.2",
            "ecosystem": "pypi"
          },
          {
            "name": "jaraco-functools",
            "direct": false,
            "version": "4.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jeepney",
            "direct": false,
            "version": "0.9.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jinja2",
            "direct": false,
            "version": "3.1.6",
            "ecosystem": "pypi"
          },
          {
            "name": "jsonpatch",
            "direct": false,
            "version": "1.33",
            "ecosystem": "pypi"
          },
          {
            "name": "jsonpointer",
            "direct": false,
            "version": "3.1.1",
            "ecosystem": "pypi"
          },
          {
            "name": "jsonschema",
            "direct": false,
            "version": "4.24.1",
            "ecosystem": "pypi"
          },
          {
            "name": "jsonschema-path",
            "direct": false,
            "version": "0.4.5",
            "ecosystem": "pypi"
          },
          {
            "name": "jsonschema-specifications",
            "direct": false,
            "version": "2025.9.1",
            "ecosystem": "pypi"
          },
          {
            "name": "keyring",
            "direct": false,
            "version": "25.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-classic",
            "direct": false,
            "version": "1.0.7",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-community",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-community",
            "direct": false,
            "version": "0.4.1",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-core",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-core",
            "direct": false,
            "version": "1.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-huggingface",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-huggingface",
            "direct": false,
            "version": "1.2.1",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-protocol",
            "direct": false,
            "version": "0.0.15",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-text-splitters",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-text-splitters",
            "direct": false,
            "version": "1.1.2",
            "ecosystem": "pypi"
          },
          {
            "name": "langsmith",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "langsmith",
            "direct": false,
            "version": "0.9.3",
            "ecosystem": "pypi"
          },
          {
            "name": "lazy-object-proxy",
            "direct": false,
            "version": "1.12.0",
            "ecosystem": "pypi"
          },
          {
            "name": "libcst",
            "direct": false,
            "version": "1.8.6",
            "ecosystem": "pypi"
          },
          {
            "name": "librt",
            "direct": false,
            "version": "0.11.0",
            "ecosystem": "pypi"
          },
          {
            "name": "license-expression",
            "direct": false,
            "version": "30.4.4",
            "ecosystem": "pypi"
          },
          {
            "name": "limits",
            "direct": false,
            "version": "5.8.0",
            "ecosystem": "pypi"
          },
          {
            "name": "loguru",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "loguru",
            "direct": false,
            "version": "0.7.3",
            "ecosystem": "pypi"
          },
          {
            "name": "mando",
            "direct": false,
            "version": "0.7.1",
            "ecosystem": "pypi"
          },
          {
            "name": "markdown",
            "direct": false,
            "version": "3.10.2",
            "ecosystem": "pypi"
          },
          {
            "name": "markdown-it-py",
            "direct": false,
            "version": "4.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "markupsafe",
            "direct": false,
            "version": "3.0.3",
            "ecosystem": "pypi"
          },
          {
            "name": "marshmallow",
            "direct": false,
            "version": "3.26.2",
            "ecosystem": "pypi"
          },
          {
            "name": "mdurl",
            "direct": false,
            "version": "0.1.2",
            "ecosystem": "pypi"
          },
          {
            "name": "mergedeep",
            "direct": false,
            "version": "1.3.4",
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs",
            "direct": false,
            "version": "1.6.1",
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-autorefs",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-autorefs",
            "direct": false,
            "version": "1.4.4",
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-get-deps",
            "direct": false,
            "version": "0.2.2",
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-git-revision-date-localized-plugin",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-git-revision-date-localized-plugin",
            "direct": false,
            "version": "1.5.1",
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-material",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-material",
            "direct": false,
            "version": "9.7.6",
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-material-extensions",
            "direct": false,
            "version": "1.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-redirects",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-redirects",
            "direct": false,
            "version": "1.2.3",
            "ecosystem": "pypi"
          },
          {
            "name": "more-itertools",
            "direct": false,
            "version": "11.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "msgpack",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "msgpack",
            "direct": false,
            "version": "1.2.1",
            "ecosystem": "pypi"
          },
          {
            "name": "msgspec",
            "direct": false,
            "version": "0.20.0",
            "ecosystem": "pypi"
          },
          {
            "name": "multidict",
            "direct": false,
            "version": "6.7.1",
            "ecosystem": "pypi"
          },
          {
            "name": "mypy",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "mypy",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "mypy-extensions",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "networkx",
            "direct": false,
            "version": "3.6.1",
            "ecosystem": "pypi"
          },
          {
            "name": "nh3",
            "direct": false,
            "version": "0.3.4",
            "ecosystem": "pypi"
          },
          {
            "name": "ninja",
            "direct": false,
            "version": "1.13.0",
            "ecosystem": "pypi"
          },
          {
            "name": "nodeenv",
            "direct": false,
            "version": "1.10.0",
            "ecosystem": "pypi"
          },
          {
            "name": "numpy",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "numpy",
            "direct": false,
            "version": "1.26.4",
            "ecosystem": "pypi"
          },
          {
            "name": "numpy",
            "direct": false,
            "version": "2.4.4",
            "ecosystem": "pypi"
          },
          {
            "name": "openapi-schema-validator",
            "direct": false,
            "version": "0.8.1",
            "ecosystem": "pypi"
          },
          {
            "name": "openapi-spec-validator",
            "direct": false,
            "version": "0.8.4",
            "ecosystem": "pypi"
          },
          {
            "name": "openprotein-python",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "openprotein-python",
            "direct": false,
            "version": "0.12.1",
            "ecosystem": "pypi"
          },
          {
            "name": "orjson",
            "direct": false,
            "version": "3.11.8",
            "ecosystem": "pypi"
          },
          {
            "name": "packageurl-python",
            "direct": false,
            "version": "0.17.6",
            "ecosystem": "pypi"
          },
          {
            "name": "packaging",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "packaging",
            "direct": false,
            "version": "25.0",
            "ecosystem": "pypi"
          },
          {
            "name": "paginate",
            "direct": false,
            "version": "0.5.7",
            "ecosystem": "pypi"
          },
          {
            "name": "pandas",
            "direct": false,
            "version": "2.3.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pathable",
            "direct": false,
            "version": "0.5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pathspec",
            "direct": false,
            "version": "1.0.4",
            "ecosystem": "pypi"
          },
          {
            "name": "pexpect",
            "direct": false,
            "version": "4.9.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pip",
            "direct": false,
            "version": "26.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pip-api",
            "direct": false,
            "version": "0.0.34",
            "ecosystem": "pypi"
          },
          {
            "name": "pip-audit",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pip-audit",
            "direct": false,
            "version": "2.10.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pip-requirements-parser",
            "direct": false,
            "version": "32.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "platformdirs",
            "direct": false,
            "version": "4.9.4",
            "ecosystem": "pypi"
          },
          {
            "name": "pluggy",
            "direct": false,
            "version": "1.6.0",
            "ecosystem": "pypi"
          },
          {
            "name": "prance",
            "direct": false,
            "version": "25.4.8.0",
            "ecosystem": "pypi"
          },
          {
            "name": "propcache",
            "direct": false,
            "version": "0.4.1",
            "ecosystem": "pypi"
          },
          {
            "name": "properdocs",
            "direct": false,
            "version": "1.6.7",
            "ecosystem": "pypi"
          },
          {
            "name": "ptyprocess",
            "direct": false,
            "version": "0.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "py",
            "direct": false,
            "version": "1.11.0",
            "ecosystem": "pypi"
          },
          {
            "name": "py-cpuinfo",
            "direct": false,
            "version": "9.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "py-serializable",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pyarrow",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pyarrow",
            "direct": false,
            "version": "24.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pycnite",
            "direct": false,
            "version": "2024.7.31",
            "ecosystem": "pypi"
          },
          {
            "name": "pycparser",
            "direct": false,
            "version": "3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pydantic",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pydantic",
            "direct": false,
            "version": "2.12.5",
            "ecosystem": "pypi"
          },
          {
            "name": "pydantic-core",
            "direct": false,
            "version": "2.41.5",
            "ecosystem": "pypi"
          },
          {
            "name": "pydantic-settings",
            "direct": false,
            "version": "2.14.2",
            "ecosystem": "pypi"
          },
          {
            "name": "pydocstyle",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pydocstyle",
            "direct": false,
            "version": "6.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pydot",
            "direct": false,
            "version": "4.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pyfakefs",
            "direct": false,
            "version": "6.1.6",
            "ecosystem": "pypi"
          },
          {
            "name": "pygments",
            "direct": false,
            "version": "2.20.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pyjwt",
            "direct": false,
            "version": "2.13.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pymdown-extensions",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pymdown-extensions",
            "direct": false,
            "version": "10.21.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pyparsing",
            "direct": false,
            "version": "3.3.2",
            "ecosystem": "pypi"
          },
          {
            "name": "pyproject-hooks",
            "direct": false,
            "version": "1.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pyright",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pyright",
            "direct": false,
            "version": "1.1.409",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pytest",
            "direct": false,
            "version": "9.1.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-asyncio",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-asyncio",
            "direct": false,
            "version": "1.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-benchmark",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-benchmark",
            "direct": false,
            "version": "5.2.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-cov",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-cov",
            "direct": false,
            "version": "7.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-mock",
            "direct": false,
            "version": "3.15.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-rerunfailures",
            "direct": false,
            "version": "13.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-timeout",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-timeout",
            "direct": false,
            "version": "2.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "python-dateutil",
            "direct": false,
            "version": "2.9.0.post0",
            "ecosystem": "pypi"
          },
          {
            "name": "python-discovery",
            "direct": false,
            "version": "1.2.2",
            "ecosystem": "pypi"
          },
          {
            "name": "python-dotenv",
            "direct": false,
            "version": "1.2.2",
            "ecosystem": "pypi"
          },
          {
            "name": "pytype",
            "direct": false,
            "version": "2024.10.11",
            "ecosystem": "pypi"
          },
          {
            "name": "pytz",
            "direct": false,
            "version": "2026.1.post1",
            "ecosystem": "pypi"
          },
          {
            "name": "pywin32-ctypes",
            "direct": false,
            "version": "0.2.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pyyaml",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pyyaml",
            "direct": false,
            "version": "6.0.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pyyaml-env-tag",
            "direct": false,
            "version": "1.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pyyaml-ft",
            "direct": false,
            "version": "8.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "radon",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "radon",
            "direct": false,
            "version": "6.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "readme-renderer",
            "direct": false,
            "version": "44.0",
            "ecosystem": "pypi"
          },
          {
            "name": "redis",
            "direct": false,
            "version": "5.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "referencing",
            "direct": false,
            "version": "0.37.0",
            "ecosystem": "pypi"
          },
          {
            "name": "regex",
            "direct": false,
            "version": "2026.4.4",
            "ecosystem": "pypi"
          },
          {
            "name": "requests",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "requests",
            "direct": false,
            "version": "2.33.1",
            "ecosystem": "pypi"
          },
          {
            "name": "requests-toolbelt",
            "direct": false,
            "version": "1.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "requirements-parser",
            "direct": false,
            "version": "0.13.0",
            "ecosystem": "pypi"
          },
          {
            "name": "rfc3339-validator",
            "direct": false,
            "version": "0.1.4",
            "ecosystem": "pypi"
          },
          {
            "name": "rfc3986",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "rich",
            "direct": false,
            "version": "14.3.3",
            "ecosystem": "pypi"
          },
          {
            "name": "rpds-py",
            "direct": false,
            "version": "0.30.0",
            "ecosystem": "pypi"
          },
          {
            "name": "ruamel-yaml",
            "direct": false,
            "version": "0.19.1",
            "ecosystem": "pypi"
          },
          {
            "name": "ruff",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "ruff",
            "direct": false,
            "version": "0.15.9",
            "ecosystem": "pypi"
          },
          {
            "name": "safetensors",
            "direct": false,
            "version": "0.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "secretstorage",
            "direct": false,
            "version": "3.5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "shellingham",
            "direct": false,
            "version": "1.5.4",
            "ecosystem": "pypi"
          },
          {
            "name": "six",
            "direct": false,
            "version": "1.17.0",
            "ecosystem": "pypi"
          },
          {
            "name": "slowapi",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "slowapi",
            "direct": false,
            "version": "0.1.9",
            "ecosystem": "pypi"
          },
          {
            "name": "smmap",
            "direct": false,
            "version": "5.0.3",
            "ecosystem": "pypi"
          },
          {
            "name": "sniffio",
            "direct": false,
            "version": "1.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "snowballstemmer",
            "direct": false,
            "version": "3.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "sortedcontainers",
            "direct": false,
            "version": "2.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "sqlalchemy",
            "direct": false,
            "version": "2.0.49",
            "ecosystem": "pypi"
          },
          {
            "name": "starlette",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "starlette",
            "direct": false,
            "version": "1.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "stevedore",
            "direct": false,
            "version": "5.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "tabulate",
            "direct": false,
            "version": "0.10.0",
            "ecosystem": "pypi"
          },
          {
            "name": "tenacity",
            "direct": false,
            "version": "9.1.4",
            "ecosystem": "pypi"
          },
          {
            "name": "tokenizers",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "tokenizers",
            "direct": false,
            "version": "0.22.2",
            "ecosystem": "pypi"
          },
          {
            "name": "toml",
            "direct": false,
            "version": "0.10.2",
            "ecosystem": "pypi"
          },
          {
            "name": "tomli",
            "direct": false,
            "version": "2.4.1",
            "ecosystem": "pypi"
          },
          {
            "name": "tomli-w",
            "direct": false,
            "version": "1.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "tomlkit",
            "direct": false,
            "version": "0.14.0",
            "ecosystem": "pypi"
          },
          {
            "name": "torch",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "tqdm",
            "direct": false,
            "version": "4.67.3",
            "ecosystem": "pypi"
          },
          {
            "name": "transformers",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "transformers",
            "direct": false,
            "version": "5.5.4",
            "ecosystem": "pypi"
          },
          {
            "name": "trove-classifiers",
            "direct": false,
            "version": "2026.1.14.14",
            "ecosystem": "pypi"
          },
          {
            "name": "twine",
            "direct": false,
            "version": "6.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "typer",
            "direct": false,
            "version": "0.24.1",
            "ecosystem": "pypi"
          },
          {
            "name": "types-colorama",
            "direct": false,
            "version": "0.4.15.20260408",
            "ecosystem": "pypi"
          },
          {
            "name": "types-defusedxml",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "types-defusedxml",
            "direct": false,
            "version": "0.7.0.20260408",
            "ecosystem": "pypi"
          },
          {
            "name": "types-orjson",
            "direct": false,
            "version": "3.6.2",
            "ecosystem": "pypi"
          },
          {
            "name": "types-pexpect",
            "direct": false,
            "version": "4.9.0.20260408",
            "ecosystem": "pypi"
          },
          {
            "name": "types-psutil",
            "direct": false,
            "version": "6.1.0.20241221",
            "ecosystem": "pypi"
          },
          {
            "name": "types-pyyaml",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "types-pyyaml",
            "direct": false,
            "version": "6.0.12.20260408",
            "ecosystem": "pypi"
          },
          {
            "name": "types-requests",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "types-requests",
            "direct": false,
            "version": "2.33.0.20260408",
            "ecosystem": "pypi"
          },
          {
            "name": "typing-extensions",
            "direct": false,
            "version": "4.15.0",
            "ecosystem": "pypi"
          },
          {
            "name": "typing-inspect",
            "direct": false,
            "version": "0.9.0",
            "ecosystem": "pypi"
          },
          {
            "name": "typing-inspection",
            "direct": false,
            "version": "0.4.2",
            "ecosystem": "pypi"
          },
          {
            "name": "tzdata",
            "direct": false,
            "version": "2026.1",
            "ecosystem": "pypi"
          },
          {
            "name": "urllib3",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "urllib3",
            "direct": false,
            "version": "2.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "userpath",
            "direct": false,
            "version": "1.9.2",
            "ecosystem": "pypi"
          },
          {
            "name": "uuid-utils",
            "direct": false,
            "version": "0.14.1",
            "ecosystem": "pypi"
          },
          {
            "name": "uv",
            "direct": false,
            "version": "0.11.24",
            "ecosystem": "pypi"
          },
          {
            "name": "uvicorn",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "uvicorn",
            "direct": false,
            "version": "0.44.0",
            "ecosystem": "pypi"
          },
          {
            "name": "virtualenv",
            "direct": false,
            "version": "21.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "vulture",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "vulture",
            "direct": false,
            "version": "2.16",
            "ecosystem": "pypi"
          },
          {
            "name": "watchdog",
            "direct": false,
            "version": "6.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "websockets",
            "direct": false,
            "version": "16.0",
            "ecosystem": "pypi"
          },
          {
            "name": "win32-setctime",
            "direct": false,
            "version": "1.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "wrapt",
            "direct": false,
            "version": "2.1.2",
            "ecosystem": "pypi"
          },
          {
            "name": "xxhash",
            "direct": false,
            "version": "3.6.0",
            "ecosystem": "pypi"
          },
          {
            "name": "yarl",
            "direct": false,
            "version": "1.23.0",
            "ecosystem": "pypi"
          },
          {
            "name": "zipp",
            "direct": false,
            "version": "3.23.0",
            "ecosystem": "pypi"
          },
          {
            "name": "zstandard",
            "direct": false,
            "version": "0.23.0",
            "ecosystem": "pypi"
          }
        ],
        "collected": true,
        "truncated": false,
        "total_count": 447,
        "direct_count": 0,
        "indirect_count": 447
      }
    },
    "maintainership": {
      "issues": {
        "open_prs": 12,
        "merged_prs": 95,
        "open_issues": 0,
        "closed_ratio": null,
        "closed_issues": 0,
        "closed_unmerged_prs": 91
      },
      "bus_factor": 1,
      "top_contributors": [
        {
          "type": "User",
          "login": "bijux",
          "commits": 6845,
          "avatar_url": "https://avatars.githubusercontent.com/u/222414480?u=647e90a042868b52de9c48ddfe64248546a520a2&v=4"
        },
        {
          "type": "Bot",
          "login": "dependabot[bot]",
          "commits": 33,
          "avatar_url": "https://avatars.githubusercontent.com/in/29110?v=4"
        },
        {
          "type": "Bot",
          "login": "github-actions[bot]",
          "commits": 3,
          "avatar_url": "https://avatars.githubusercontent.com/in/15368?v=4"
        }
      ],
      "contributors_sampled": 3,
      "top_contributor_share": 0.995
    },
    "quality_signals": {
      "has_ci": true,
      "has_tests": true,
      "ci_workflows": [
        "automerge-pr.yml",
        "bijux-std.yml",
        "ci.yml",
        "deploy-docs.yml",
        "github-policy.yml",
        "pr-approval-policy.yml",
        "release-artifacts.yml",
        "release-ghcr.yml",
        "release-github.yml",
        "release-pypi.yml",
        "verify.yml"
      ],
      "has_docs_dir": true,
      "linter_configs": [
        "ruff.toml",
        "tox.ini"
      ],
      "has_editorconfig": false,
      "has_linter_config": true,
      "has_precommit_config": false
    },
    "security_signals": {
      "lockfiles": [
        "package-lock.json",
        "uv.lock"
      ],
      "scorecard": {
        "checks": [
          {
            "name": "Binary-Artifacts",
            "score": 10,
            "reason": "no binaries found in the repo",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
          },
          {
            "name": "Branch-Protection",
            "score": 4,
            "reason": "branch protection is not maximal on development and all release branches",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
          },
          {
            "name": "CI-Tests",
            "score": 10,
            "reason": "2 out of 2 merged PRs checked by a CI test -- score normalized to 10",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
          },
          {
            "name": "CII-Best-Practices",
            "score": 0,
            "reason": "no effort to earn an OpenSSF best practices badge detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
          },
          {
            "name": "Code-Review",
            "score": 0,
            "reason": "Found 0/2 approved changesets -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
          },
          {
            "name": "Contributors",
            "score": 0,
            "reason": "project has 0 contributing companies or organizations -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
          },
          {
            "name": "Dangerous-Workflow",
            "score": 10,
            "reason": "no dangerous workflow patterns detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
          },
          {
            "name": "Dependency-Update-Tool",
            "score": 10,
            "reason": "update tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
          },
          {
            "name": "Fuzzing",
            "score": 0,
            "reason": "project is not fuzzed",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
          },
          {
            "name": "License",
            "score": 10,
            "reason": "license file detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
          },
          {
            "name": "Maintained",
            "score": 10,
            "reason": "30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
          },
          {
            "name": "Packaging",
            "score": 10,
            "reason": "packaging workflow detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
          },
          {
            "name": "Pinned-Dependencies",
            "score": 10,
            "reason": "all dependencies are pinned",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
          },
          {
            "name": "SAST",
            "score": 0,
            "reason": "SAST tool is not run on all commits -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
          },
          {
            "name": "Security-Policy",
            "score": 10,
            "reason": "security policy file detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
          },
          {
            "name": "Signed-Releases",
            "score": 0,
            "reason": "Project has not signed or included provenance with any releases.",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
          },
          {
            "name": "Token-Permissions",
            "score": 0,
            "reason": "detected GitHub workflow tokens with excessive permissions",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
          },
          {
            "name": "Vulnerabilities",
            "score": 8,
            "reason": "2 existing vulnerabilities detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
          }
        ],
        "commit": "afca84d79ed54acea16abfa8ff6ce3cb98671d7b",
        "ran_at": "2026-07-15T13:03:25Z",
        "aggregate_score": 5.9,
        "scorecard_version": "v5.5.0"
      },
      "has_codeql_workflow": false,
      "has_security_policy": true,
      "has_dependabot_config": true
    }
  },
  "config": {
    "disabled_metrics": [],
    "disabled_categories": [],
    "disabled_components": {}
  },
  "source": {
    "url": "https://github.com/bijux/bijux-proteomics",
    "host": "github.com",
    "name": "bijux-proteomics",
    "owner": "bijux"
  },
  "metrics": {
    "overall": {
      "key": "overall",
      "band": "moderate",
      "name": "Overall health",
      "note": null,
      "notes": [],
      "value": 57,
      "inputs": {
        "security": 59,
        "vitality": 80,
        "community": 40,
        "governance": 26,
        "engineering": 82
      },
      "components": []
    },
    "categories": [
      {
        "key": "vitality",
        "band": "good",
        "name": "Vitality",
        "value": 80,
        "weight": 0.22,
        "metrics": [
          {
            "key": "development_activity",
            "band": "good",
            "name": "Development activity",
            "note": null,
            "notes": [],
            "value": 73,
            "inputs": {
              "commits_last_year": 6881,
              "human_commit_share": null,
              "days_since_last_push": 4,
              "active_weeks_last_year": 13
            },
            "components": [
              {
                "key": "push_recency",
                "name": "Push recency",
                "detail": "last push 4 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "push_recency",
                    "params": {
                      "days": 4
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_cadence",
                "name": "Commit cadence",
                "detail": "13/52 weeks with commits",
                "points": 9,
                "status": "partial",
                "details": [
                  {
                    "code": "commit_cadence_weeks",
                    "params": {
                      "weeks": 13
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_volume",
                "name": "Commit volume",
                "detail": "6881 commits in the last year",
                "points": 18,
                "status": "met",
                "details": [
                  {
                    "code": "commits_last_year",
                    "params": {
                      "count": 6881
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "openssf_scorecard_maintained",
                "name": "OpenSSF Scorecard: Maintained",
                "detail": "30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "release_discipline",
            "band": "excellent",
            "name": "Release discipline",
            "note": null,
            "notes": [],
            "value": 90,
            "inputs": {
              "releases_count": 5,
              "latest_release_tag": "v0.3.8",
              "releases_from_tags": false,
              "days_since_latest_release": 14,
              "mean_days_between_releases": 20.4
            },
            "components": [
              {
                "key": "ships_releases",
                "name": "Ships releases",
                "detail": "5 releases published",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "releases_published",
                    "params": {
                      "count": 5
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "release_recency",
                "name": "Release recency",
                "detail": "latest release 14 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "release_recency",
                    "params": {
                      "days": 14
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "release_cadence",
                "name": "Release cadence",
                "detail": "a release every ~20.4 days",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "release_cadence",
                    "params": {
                      "gap": 20.4
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "openssf_scorecard_signed_releases",
                "name": "OpenSSF Scorecard: Signed-Releases",
                "detail": "Project has not signed or included provenance with any releases.",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "abandonment",
            "band": "excellent",
            "name": "Abandonment",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "cap": null,
              "state": "unverified",
              "guards": [],
              "signals": [],
              "red_flag": false,
              "multiplier_pct": 100,
              "declared_reason": null,
              "unverified_reason": "no_commit_sample",
              "unanswered_open_prs": null,
              "unanswered_open_issues": null,
              "days_since_last_merged_pr": null,
              "days_since_last_human_commit": null,
              "days_since_last_human_commit_is_floor": false
            },
            "components": [
              {
                "key": "project_is_still_maintained",
                "name": "Project is still maintained",
                "detail": "maintenance record not established from the collected data",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "abandonment_unverified",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Is the project alive — is code being written and are releases shipping?"
      },
      {
        "key": "community",
        "band": "at_risk",
        "name": "Community & Adoption",
        "value": 40,
        "weight": 0.18,
        "metrics": [
          {
            "key": "popularity",
            "band": "critical",
            "name": "Popularity & adoption",
            "note": null,
            "notes": [],
            "value": 1,
            "inputs": {
              "forks": 0,
              "stars": 2,
              "watchers": 0,
              "growth_state": "unverified",
              "growth_factor_pct": 100,
              "growth_unverified_reason": "no_history"
            },
            "components": [
              {
                "key": "stars",
                "name": "Stars",
                "detail": "2 stars",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "stars",
                    "params": {
                      "count": 2
                    }
                  }
                ],
                "max_points": 60
              },
              {
                "key": "forks",
                "name": "Forks",
                "detail": "0 forks",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "forks",
                    "params": {
                      "count": 0
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "watchers",
                "name": "Watchers",
                "detail": "0 watchers",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "watchers",
                    "params": {
                      "count": 0
                    }
                  }
                ],
                "max_points": 15
              }
            ]
          },
          {
            "key": "community_health",
            "band": "excellent",
            "name": "Community health",
            "note": null,
            "notes": [],
            "value": 85,
            "inputs": {
              "has_readme": true,
              "has_license": true,
              "has_contributing": true,
              "has_issue_template": false,
              "has_code_of_conduct": true,
              "has_pull_request_template": false
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 22.5,
                "status": "met",
                "details": [],
                "max_points": 22.5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "recognized license (Apache-2.0)",
                "points": 22.5,
                "status": "met",
                "details": [
                  {
                    "code": "license_standard",
                    "params": {}
                  },
                  {
                    "code": "license_spdx",
                    "params": {
                      "spdx": "Apache-2.0"
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributing_guide",
                "name": "CONTRIBUTING guide",
                "detail": null,
                "points": 18,
                "status": "met",
                "details": [],
                "max_points": 18
              },
              {
                "key": "code_of_conduct",
                "name": "Code of conduct",
                "detail": null,
                "points": 13.5,
                "status": "met",
                "details": [],
                "max_points": 13.5
              },
              {
                "key": "issue_template",
                "name": "Issue template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.2
              },
              {
                "key": "pr_template",
                "name": "PR template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.3
              }
            ]
          }
        ],
        "description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
      },
      {
        "key": "governance",
        "band": "critical",
        "name": "Sustainability & Governance",
        "value": 26,
        "weight": 0.24,
        "metrics": [
          {
            "key": "maintainer_resilience",
            "band": "critical",
            "name": "Maintainer resilience (bus factor)",
            "note": null,
            "notes": [],
            "value": 13,
            "inputs": {
              "bus_factor": 1,
              "contributors_sampled": 3,
              "top_contributor_share": 0.995
            },
            "components": [
              {
                "key": "bus_factor",
                "name": "Bus factor",
                "detail": "1 contributor(s) cover half of all commits",
                "points": 9,
                "status": "partial",
                "details": [
                  {
                    "code": "bus_factor",
                    "params": {
                      "count": 1
                    }
                  }
                ],
                "max_points": 54
              },
              {
                "key": "commit_distribution",
                "name": "Commit distribution",
                "detail": "top contributor authored 100% of commits",
                "points": 0.1,
                "status": "partial",
                "details": [
                  {
                    "code": "top_contributor_share",
                    "params": {
                      "share": 100
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributor_breadth",
                "name": "Contributor breadth",
                "detail": "3 contributors",
                "points": 4.1,
                "status": "partial",
                "details": [
                  {
                    "code": "contributors_sampled",
                    "params": {
                      "count": 3
                    }
                  }
                ],
                "max_points": 13.5
              },
              {
                "key": "openssf_scorecard_contributors",
                "name": "OpenSSF Scorecard: Contributors",
                "detail": "project has 0 contributing companies or organizations -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "responsiveness",
            "band": "at_risk",
            "name": "Issue & PR responsiveness",
            "note": "Excluded from scoring (no data or not applicable): Issue resolution. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "issue_resolution"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 37,
            "inputs": {
              "merged_prs": 95,
              "open_issues": 0,
              "closed_issues": 0,
              "issue_closed_ratio": null,
              "closed_unmerged_prs": 91
            },
            "components": [
              {
                "key": "issue_resolution",
                "name": "Issue resolution",
                "detail": "no issues or no data",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_issues_or_data",
                    "params": {}
                  }
                ],
                "max_points": 46.75
              },
              {
                "key": "pr_acceptance",
                "name": "PR acceptance",
                "detail": "95/186 decided PRs merged",
                "points": 19.5,
                "status": "partial",
                "details": [
                  {
                    "code": "decided_prs_merged",
                    "params": {
                      "merged": 95,
                      "decided": 186
                    }
                  }
                ],
                "max_points": 38.25
              },
              {
                "key": "openssf_scorecard_code_review",
                "name": "OpenSSF Scorecard: Code-Review",
                "detail": "Found 0/2 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              }
            ]
          },
          {
            "key": "stewardship",
            "band": "at_risk",
            "name": "Ownership & stewardship",
            "note": "Excluded from scoring (no data or not applicable): Verified domain. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "verified_domain"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 32,
            "inputs": {
              "followers": 5,
              "owner_type": "User",
              "is_verified": null,
              "owner_login": "bijux",
              "public_repos": 12,
              "account_age_days": 357
            },
            "components": [
              {
                "key": "ownership_backing",
                "name": "Ownership backing",
                "detail": "personal (user) account",
                "points": 10,
                "status": "partial",
                "details": [
                  {
                    "code": "owner_personal",
                    "params": {}
                  }
                ],
                "max_points": 30
              },
              {
                "key": "verified_domain",
                "name": "Verified domain",
                "detail": "not applicable to user accounts",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "not_applicable_to_user_accounts",
                    "params": {}
                  }
                ],
                "max_points": 20
              },
              {
                "key": "owner_reach",
                "name": "Owner reach",
                "detail": "5 followers of bijux",
                "points": 5.6,
                "status": "partial",
                "details": [
                  {
                    "code": "owner_followers",
                    "params": {
                      "count": 5,
                      "login": "bijux"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "track_record",
                "name": "Track record",
                "detail": "12 public repos, account ~0 yr old",
                "points": 10.1,
                "status": "partial",
                "details": [
                  {
                    "code": "public_repos",
                    "params": {
                      "count": 12
                    }
                  },
                  {
                    "code": "account_age_years",
                    "params": {
                      "years": 0
                    }
                  }
                ],
                "max_points": 25
              }
            ]
          }
        ],
        "description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
      },
      {
        "key": "engineering",
        "band": "good",
        "name": "Engineering Quality",
        "value": 82,
        "weight": 0.2,
        "metrics": [
          {
            "key": "engineering_practices",
            "band": "good",
            "name": "Engineering practices",
            "note": null,
            "notes": [],
            "value": 84,
            "inputs": {
              "has_ci": true,
              "has_tests": true,
              "has_editorconfig": false,
              "has_linter_config": true,
              "has_precommit_config": false
            },
            "components": [
              {
                "key": "ci_workflows",
                "name": "CI workflows",
                "detail": "11 workflow(s)",
                "points": 24,
                "status": "met",
                "details": [
                  {
                    "code": "ci_workflows",
                    "params": {
                      "count": 11
                    }
                  }
                ],
                "max_points": 24
              },
              {
                "key": "tests_present",
                "name": "Tests present",
                "detail": null,
                "points": 24,
                "status": "met",
                "details": [],
                "max_points": 24
              },
              {
                "key": "linter_config",
                "name": "Linter config",
                "detail": "ruff.toml, tox.ini",
                "points": 16,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "ruff.toml, tox.ini"
                    }
                  }
                ],
                "max_points": 16
              },
              {
                "key": "pre_commit_hooks",
                "name": "Pre-commit hooks",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 9.6
              },
              {
                "key": "editorconfig",
                "name": ".editorconfig",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.4
              },
              {
                "key": "openssf_scorecard_ci_tests",
                "name": "OpenSSF Scorecard: CI-Tests",
                "detail": "2 out of 2 merged PRs checked by a CI test -- score normalized to 10",
                "points": 20,
                "status": "met",
                "details": [],
                "max_points": 20
              }
            ]
          },
          {
            "key": "documentation",
            "band": "good",
            "name": "Documentation",
            "note": null,
            "notes": [],
            "value": 80,
            "inputs": {
              "topics": [],
              "has_wiki": true,
              "homepage": "http://bijux.io/bijux-proteomics/",
              "has_readme": true,
              "has_docs_dir": true,
              "has_description": false
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 30,
                "status": "met",
                "details": [],
                "max_points": 30
              },
              {
                "key": "documentation_directory",
                "name": "Documentation directory",
                "detail": null,
                "points": 25,
                "status": "met",
                "details": [],
                "max_points": 25
              },
              {
                "key": "documentation_homepage_site",
                "name": "Documentation / homepage site",
                "detail": "http://bijux.io/bijux-proteomics/",
                "points": 15,
                "status": "met",
                "details": [],
                "max_points": 15
              },
              {
                "key": "repository_description",
                "name": "Repository description",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              },
              {
                "key": "topics",
                "name": "Topics",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              },
              {
                "key": "wiki",
                "name": "Wiki",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
      },
      {
        "key": "security",
        "band": "moderate",
        "name": "Security",
        "value": 59,
        "weight": 0.16,
        "metrics": [
          {
            "key": "security_posture",
            "band": "moderate",
            "name": "Security posture",
            "note": null,
            "notes": [],
            "value": 59,
            "inputs": {
              "source": "openssf_scorecard",
              "checks_evaluated": 18,
              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 0,
              "scorecard_aggregate": 5.9
            },
            "components": [
              {
                "key": "binary_artifacts",
                "name": "Binary-Artifacts",
                "detail": "no binaries found in the repo",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "branch protection is not maximal on development and all release branches",
                "points": 3,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "ci_tests",
                "name": "CI-Tests",
                "detail": "2 out of 2 merged PRs checked by a CI test -- score normalized to 10",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "code_review",
                "name": "Code-Review",
                "detail": "Found 0/2 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 0 contributing companies or organizations -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no dangerous workflow patterns detected",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "update tool detected",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow detected",
                "points": 5,
                "status": "met",
                "details": [],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
                "detail": "all dependencies are pinned",
                "points": 5,
                "status": "met",
                "details": [],
                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
                "detail": "SAST tool is not run on all commits -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "security_policy",
                "name": "Security-Policy",
                "detail": "security policy file detected",
                "points": 5,
                "status": "met",
                "details": [],
                "max_points": 5
              },
              {
                "key": "signed_releases",
                "name": "Signed-Releases",
                "detail": "Project has not signed or included provenance with any releases.",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "detected GitHub workflow tokens with excessive permissions",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "2 existing vulnerabilities detected",
                "points": 6,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              }
            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "moderate",
        "name": "AI Readiness",
        "value": 57,
        "weight": 0,
        "metrics": [
          {
            "key": "ai_agent_context",
            "band": "critical",
            "name": "Agent context & guidance",
            "note": "Excluded from scoring (no data or not applicable): Legible commit history. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "legible_commit_history"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 1,
            "inputs": {
              "has_llms_txt": false,
              "legible_history_share": null,
              "agent_instruction_files": [],
              "agent_instruction_max_bytes": null
            },
            "components": [
              {
                "key": "agent_instructions",
                "name": "Agent instructions",
                "detail": "no CLAUDE.md / AGENTS.md / editor rules",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_instructions",
                    "params": {}
                  }
                ],
                "max_points": 45
              },
              {
                "key": "machine_readable_docs_llms_txt",
                "name": "Machine-readable docs (llms.txt)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "legible_commit_history",
                "name": "Legible commit history",
                "detail": "no data",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "ai_verify_loop",
            "band": "excellent",
            "name": "Verify loop (build / test / typecheck)",
            "note": "Excluded from scoring (no data or not applicable): Demonstrated agent practice. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "demonstrated_agent_practice"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 97,
            "inputs": {
              "has_nix": false,
              "has_tests": true,
              "lockfiles": [
                "package-lock.json",
                "uv.lock"
              ],
              "has_dockerfile": false,
              "typed_language": false,
              "bootstrap_files": [
                "Makefile"
              ],
              "has_devcontainer": false,
              "has_linter_config": true,
              "typecheck_configs": [
                "configs/mypy.ini",
                "packages/agentic-proteins/src/agentic_proteins/py.typed",
                "packages/bijux-proteomics-core/src/bijux_proteomics/py.typed",
                "packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed",
                "packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed",
                "packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed",
                "packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed",
                "packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed",
                "packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed",
                "packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed",
                "packages/proteomics-core/src/proteomics_core/py.typed",
                "packages/proteomics-foundation/src/proteomics_foundation/py.typed",
                "packages/proteomics-intelligence/src/proteomics_intelligence/py.typed",
                "packages/proteomics-knowledge/src/proteomics_knowledge/py.typed",
                "packages/proteomics-lab/src/proteomics_lab/py.typed",
                "packages/proteomics-runtime/src/proteomics_runtime/py.typed",
                "packages/proteomics/src/proteomics/py.typed"
              ],
              "agent_commit_share": null,
              "toolchain_manifests": [],
              "dependency_bot_commit_share": 0
            },
            "components": [
              {
                "key": "one_command_bootstrap",
                "name": "One-command bootstrap",
                "detail": "Makefile",
                "points": 18,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "Makefile"
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "automated_tests",
                "name": "Automated tests",
                "detail": null,
                "points": 22,
                "status": "met",
                "details": [],
                "max_points": 22
              },
              {
                "key": "lint_format_config",
                "name": "Lint / format config",
                "detail": "ruff.toml, tox.ini",
                "points": 11,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "ruff.toml, tox.ini"
                    }
                  }
                ],
                "max_points": 11
              },
              {
                "key": "static_type_checking",
                "name": "Static type checking",
                "detail": "configs/mypy.ini, packages/agentic-proteins/src/agentic_proteins/py.typed, packages/bijux-proteomics-core/src/bijux_proteomics/py.typed, packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed, packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed, packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed, packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed, packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed, packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed, packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed, packages/proteomics-core/src/proteomics_core/py.typed, packages/proteomics-foundation/src/proteomics_foundation/py.typed, packages/proteomics-intelligence/src/proteomics_intelligence/py.typed, packages/proteomics-knowledge/src/proteomics_knowledge/py.typed, packages/proteomics-lab/src/proteomics_lab/py.typed, packages/proteomics-runtime/src/proteomics_runtime/py.typed, packages/proteomics/src/proteomics/py.typed",
                "points": 11,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "configs/mypy.ini, packages/agentic-proteins/src/agentic_proteins/py.typed, packages/bijux-proteomics-core/src/bijux_proteomics/py.typed, packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed, packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed, packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed, packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed, packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed, packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed, packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed, packages/proteomics-core/src/proteomics_core/py.typed, packages/proteomics-foundation/src/proteomics_foundation/py.typed, packages/proteomics-intelligence/src/proteomics_intelligence/py.typed, packages/proteomics-knowledge/src/proteomics_knowledge/py.typed, packages/proteomics-lab/src/proteomics_lab/py.typed, packages/proteomics-runtime/src/proteomics_runtime/py.typed, packages/proteomics/src/proteomics/py.typed"
                    }
                  }
                ],
                "max_points": 11
              },
              {
                "key": "reproducible_environment",
                "name": "Reproducible environment",
                "detail": "lockfile",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "lockfile"
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "demonstrated_agent_practice",
                "name": "Demonstrated agent practice",
                "detail": "no data",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 10
              },
              {
                "key": "automated_maintenance",
                "name": "Automated maintenance",
                "detail": "dependency automation configured, none observed in the sampled commits",
                "points": 5,
                "status": "partial",
                "details": [
                  {
                    "code": "dependency_bot_config_only",
                    "params": {}
                  }
                ],
                "max_points": 8
              },
              {
                "key": "openssf_scorecard_pinned_dependencies",
                "name": "OpenSSF Scorecard: Pinned-Dependencies",
                "detail": "all dependencies are pinned",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "ai_code_legibility",
            "band": "good",
            "name": "Code legibility for models",
            "note": null,
            "notes": [],
            "value": 82,
            "inputs": {
              "primary_language": "Python",
              "largest_source_bytes": 576731,
              "source_files_sampled": 3667,
              "oversized_source_files": 12
            },
            "components": [
              {
                "key": "type_checkable_code",
                "name": "Type-checkable code",
                "detail": "Python with type-check config (configs/mypy.ini, packages/agentic-proteins/src/agentic_proteins/py.typed, packages/bijux-proteomics-core/src/bijux_proteomics/py.typed, packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed, packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed, packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed, packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed, packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed, packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed, packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed, packages/proteomics-core/src/proteomics_core/py.typed, packages/proteomics-foundation/src/proteomics_foundation/py.typed, packages/proteomics-intelligence/src/proteomics_intelligence/py.typed, packages/proteomics-knowledge/src/proteomics_knowledge/py.typed, packages/proteomics-lab/src/proteomics_lab/py.typed, packages/proteomics-runtime/src/proteomics_runtime/py.typed, packages/proteomics/src/proteomics/py.typed)",
                "points": 27,
                "status": "partial",
                "details": [
                  {
                    "code": "typecheck_config_language",
                    "params": {
                      "files": "configs/mypy.ini, packages/agentic-proteins/src/agentic_proteins/py.typed, packages/bijux-proteomics-core/src/bijux_proteomics/py.typed, packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed, packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed, packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed, packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed, packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed, packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed, packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed, packages/proteomics-core/src/proteomics_core/py.typed, packages/proteomics-foundation/src/proteomics_foundation/py.typed, packages/proteomics-intelligence/src/proteomics_intelligence/py.typed, packages/proteomics-knowledge/src/proteomics_knowledge/py.typed, packages/proteomics-lab/src/proteomics_lab/py.typed, packages/proteomics-runtime/src/proteomics_runtime/py.typed, packages/proteomics/src/proteomics/py.typed",
                      "language": "Python"
                    }
                  }
                ],
                "max_points": 45
              },
              {
                "key": "manageable_file_sizes",
                "name": "Manageable file sizes",
                "detail": "12/3667 source files over 60KB",
                "points": 54.8,
                "status": "partial",
                "details": [
                  {
                    "code": "oversized_source_files",
                    "params": {
                      "kb": 60,
                      "sampled": 3667,
                      "oversized": 12
                    }
                  }
                ],
                "max_points": 55
              }
            ]
          },
          {
            "key": "ai_interfaces",
            "band": "at_risk",
            "name": "Machine-readable interfaces",
            "note": null,
            "notes": [],
            "value": 40,
            "inputs": {
              "example_dirs": [
                "examples"
              ],
              "has_mcp_signal": false,
              "api_schema_files": []
            },
            "components": [
              {
                "key": "api_schema_openapi_graphql_proto",
                "name": "API schema (OpenAPI/GraphQL/proto)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 40
              },
              {
                "key": "mcp_server",
                "name": "MCP server",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "runnable_examples",
                "name": "Runnable examples",
                "detail": "examples",
                "points": 40,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "examples"
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          }
        ],
        "description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
      }
    ],
    "metrics_version": "1.13.0"
  },
  "warnings": [
    "Could not fetch pypi package 'bijux-proteomics-repository' from its registry"
  ],
  "report_type": "repository",
  "generated_at": "2026-07-15T13:03:42.438752Z",
  "schema_version": "0.11.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/b/bijux/bijux-proteomics.svg",
  "full_name": "bijux/bijux-proteomics",
  "license_state": "standard",
  "license_spdx": "Apache-2.0"
}

Оцінки — це сигнали, а не гарантії. Вони відображають публічно видимі практики на GitHub — це не аудит коду й не гарантія безпеки.

Відсутні дані виключаються, а ваги перенормовуються — нуль за відсутність ніколи не ставиться. Методологія версіонована й відкрита: метрики v1.13.0, схема v0.11.0 — повна методологія · вікі метрик.

Як окремий результат виглядає на тлі всього реєстру: сукупна статистика.

0/60	Зірки — 2 зірок
0/25	Форки — 0 форків
0/15	Спостерігачі — 0 спостерігачів

forks	0
stars	2
watchers	0
growth_state	unverified
growth_factor_pct	100
growth_unverified_reason	no_history

Індекс здоров'я програмного забезпечення

Профіль оцінок

Власність

Метрики за категоріями

Ключові факти

Попередження щодо збору даних

Докладніше

Пов’язані записи