Public record
Software health reportschema 0.34.0 · metrics 2.10.0 · 2026-09-08 15:28 UTC

bijux / bijux-proteomics

PythonApache-2.0★ 2 stars⑂ 0 forkssince Jan 2026View on GitHub ↗
KindCommand-line toolNetwork servicehow this is determined

bijux/bijux-proteomics holds a health index of 65 out of 100, placing it in the Good band. It scores highest on Engineering Quality (82/100) and lowest on Community & Adoption (37/100). It was last updated 4 days ago. A single contributor accounts for most of its recent work.

65
overall / 100
Good

Software health index

Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean, calibrated against the distribution of the public record so bands carry percentile meaning; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At Risk ceiling of 34.

65
Exceptional93-100The record's top tier (≈ top 5%); essentially all checked criteria met
Excellent80-92Strong across the board; minor gaps
Good65-79Healthy; gaps are limited and manageable
Moderate50-64Acceptable with notable gaps; review recommended
Weak35-49Material weaknesses across several areas
At Risk20-34Significant weaknesses; adoption warrants caution
Critical1-19Severe problems (abandoned, single-maintainer, no hygiene)
VitalityCommunity &AdoptionSustainability &GovernanceEngineeringQualitySecurityAI Readiness

Score profile

Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.

The weighted overall 60 is calibrated to 65 on the published index scale (record calibration 2026-08-02).

Ownership

Bijan MousaviPersonal account
3 followers13 public repossince Jul 2025

This repository is owned by a personal account. A single-owner project carries more continuity risk than an organization-backed one.

Package ecosystems

RegistryPackageVersionDownloads / moVersionsLast publishTags
PyPIproteomics0.3.827169 days agobioinformaticscompatibilitypackagingproteomics
PyPIproteomics-lab0.3.815169 days agocompatibilitylabpackagingproteomics
PyPIproteomics-core0.3.814169 days agobioinformaticscompatibilitypackagingproteomics
PyPIagentic-proteins0.3.8-1369 days agocompatibilityforwardingmigrationproteomicsruntime
PyPIbijux-proteomics0.3.8-169 days agobioinformaticscompatibilitypackagingproteomics
PyPIproteomics-runtime0.3.8-169 days agocompatibilitypackagingproteomicsruntime
PyPIbijux-proteomics-lab0.3.8-969 days agoassay-operationsbioinformaticsexperiment-schedulinglab-planningproteomics

Metrics by category

Vitality

Is the project alive — is code being written and are releases shipping?

80Excellent · 21% of overall

Development activity

74Good
How it's scored
36/36Push recency — last push 4 days ago
10.4/36Commit cadence — 15/52 weeks with commits
18/18Commit volume — 7,134 commits in the last year
10/10OpenSSF Scorecard: Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
Inputs used
commits_last_year7,134
human_commit_share1
days_since_last_push4
active_weeks_last_year15

Release discipline

90Excellent
How it's scored
27/27Ships releases — 5 releases published
36/36Release recency — latest release 69 days ago
27/27Release cadence — a release every ~20.4 days
0/10OpenSSF Scorecard: Signed-Releases — Project has not signed or included provenance with any releases.
Inputs used
releases_count5
latest_release_tagv0.3.8
releases_from_tagsno
days_since_latest_release69
mean_days_between_releases20.4

Community & Adoption

Does the project have users, downloads, attention, and a welcoming setup for contributors?

37Weak · 17% of overall

Popularity & adoption

1Critical
How it's scored
0/60Stars — 2 stars
0/25Forks — 0 forks
0/15Watchers — 0 watchers
Inputs used
forks0
stars2
watchers0
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history

Community health

85Excellent
How it's scored
22.5/22.5README
22.5/22.5License — recognized license (Apache-2.0)
18/18CONTRIBUTING guide
13.5/13.5Code of conduct
0/7.2Issue template
0/6.3PR template
Inputs used
has_readmeyes
has_licenseyes
readme_badges31
has_contributingyes
has_issue_templateno
has_code_of_conductyes
readme_badge_servicesgithub.com, shields.io
has_pull_request_templateno

Ecosystem adoption (downloads)

29At Risk
How it's scored
23.4/80Monthly downloads — 56 downloads/month across pypi
0/20Registry dependents — not reported by this ecosystem
Inputs used
packagesproteomics, proteomics-lab, proteomics-core, agentic-proteins, bijux-proteomics, proteomics-runtime, bijux-proteomics-lab
dependents—
ecosystemspypi
total_downloads—
monthly_downloads56
unverified_packages_excluded—
Excluded from scoring (no data or not applicable): Registry dependents. Remaining weights renormalized.

Sustainability & Governance

Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?

38Weak · 23% of overall

Maintainer resilience (bus factor)

10Critical
How it's scored
9/54Bus factor — 1 contributor(s) cover half of all commits
0/22.5Commit distribution — top contributor authored 100% of commits
1.4/13.5Contributor breadth — 1 contributors
0/10OpenSSF Scorecard: Contributors — project has 0 contributing companies or organizations -- score normalized to 0
Inputs used
bus_factor1
contributors_sampled1
top_contributor_share1

Issue & PR responsiveness

29At Risk
How it's scored
0/42Issue resolution — no issues or no data
13.1/30PR acceptance — 98/225 decided PRs merged
0/13Newcomer PR acceptance — no first-time contributor's PR decided in 30d
0/15OpenSSF Scorecard: Code-Review — Found 0/3 approved changesets -- score normalized to 0
Inputs used
merged_prs98
open_issues0
closed_issues0
prs_merged_7d0
prs_decided_7d0
prs_merged_30d0
prs_decided_30d0
issue_closed_ratio—
closed_unmerged_prs127
first_time_authors_30d0
first_time_prs_merged_30d0
first_time_prs_decided_30d0
Excluded from scoring (no data or not applicable): Issue resolution, Newcomer PR acceptance. Remaining weights renormalized.

Ownership & stewardship

31At Risk
How it's scored
10/30Ownership backing — personal (user) account
0/20Verified domain — not applicable to user accounts
4.3/25Owner reach — 3 followers of bijux
10.6/25Track record — 13 public repos, account ~1 yr old
Inputs used
followers3
owner_typeUser
is_verified—
owner_loginbijux
public_repos13
account_age_days412
Excluded from scoring (no data or not applicable): Verified domain. Remaining weights renormalized.

Package maintenance

100Exceptional
How it's scored
25/25Published & resolvable — 7 package(s) on pypi
35/35Publish recency — latest publish 69 days ago
20/20Version history — 13 published versions
20/20Not deprecated — active, not deprecated or yanked
Inputs used
packagesproteomics, proteomics-lab, proteomics-core, agentic-proteins, bijux-proteomics, proteomics-runtime, bijux-proteomics-lab
ecosystemspypi
any_deprecatedno
min_days_since_publish69

Engineering Quality

Are baseline engineering and documentation practices in place?

82Excellent · 19% of overall

Engineering practices

84Excellent
How it's scored
24/24CI workflows — 11 workflow(s)
24/24Tests present
16/16Linter config — ruff.toml, tox.ini
0/9.6Pre-commit hooks
0/6.4.editorconfig
20/20OpenSSF Scorecard: CI-Tests — 3 out of 3 merged PRs checked by a CI test -- score normalized to 10
Inputs used
has_ciyes
has_testsyes
has_editorconfigno
has_linter_configyes
has_precommit_configno

Documentation

80Excellent
How it's scored
30/30README
25/25Documentation directory
15/15Documentation / homepage site — http://bijux.io/bijux-proteomics/
0/10Repository description
0/10Topics
10/10Wiki
Inputs used
topics—
has_wikiyes
homepagehttp://bijux.io/bijux-proteomics/
docs_sitehttp://bijux.io/bijux-proteomics/
has_readmeyes
has_docs_diryes
has_descriptionno

Security

Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?

62Moderate · 16% of overall

Security posture

53Moderate
How it's scored
7.5/7.5Binary-Artifacts — no binaries found in the repo
3/7.5Branch-Protection — branch protection is not maximal on development and all release branches
2.5/2.5CI-Tests — 3 out of 3 merged PRs checked by a CI test -- score normalized to 10
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
0/7.5Code-Review — Found 0/3 approved changesets -- score normalized to 0
0/2.5Contributors — project has 0 contributing companies or organizations -- score normalized to 0
10/10Dangerous-Workflow — no dangerous workflow patterns detected
7.5/7.5Dependency-Update-Tool — update tool detected
0/5Fuzzing — project is not fuzzed
2.5/2.5License — license file detected
7.5/7.5Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
5/5Packaging — packaging workflow detected
5/5Pinned-Dependencies — all dependencies are pinned
0/5SAST — SAST tool is not run on all commits -- score normalized to 0
5/5Security-Policy — security policy file detected
0/7.5Signed-Releases — Project has not signed or included provenance with any releases.
0/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
0/7.5Vulnerabilities — 26 existing vulnerabilities detected
Inputs used
sourceopenssf_scorecard
checks_evaluated18
scorecard_versionv5.5.0
checks_inconclusive0
scorecard_aggregate5.3

Dependency advisories

100Exceptional
How it's scored
35/35Direct dependencies free of known advisories — no direct dependency carries a known advisory
25/25Indirect dependencies free of known advisories — no indirect dependency carries a known advisory
0/40No advisories left outstanding — no advisory carries a publication date
Inputs used
sourceosv
advisories0
affected_packages0
assessed_packages12
unassessed_packages0
affected_by_severitynone
direct_affected_packages0
Excluded from scoring (no data or not applicable): No advisories left outstanding. Remaining weights renormalized. Matched the pypi:bijux-proteomics@0.3.8 runtime dependency closure — what installing the published package pulls in — 12 packages. Reachability is not analyzed.

AI Readiness

How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight (4%): agent tooling is a real maintenance signal, but a repository with none can still reach 100/100.

65Good · 4% of overall

Agent context & guidance

40Weak
How it's scored
0/45Agent instructions — no CLAUDE.md / AGENTS.md / editor rules
0/15Machine-readable docs (llms.txt)
40/40Legible commit history — 100 of 100 human commits state their intent (structured subject or explanatory body)
Inputs used
has_llms_txtno
llms_txt_url—
legible_history_share1
agent_instruction_files—
agent_instruction_max_bytes—

Verify loop (build / test / typecheck)

87Excellent
How it's scored
18/18One-command bootstrap — Makefile
22/22Automated tests
11/11Lint / format config — ruff.toml, tox.ini
11/11Static type checking — configs/mypy.ini, packages/agentic-proteins/src/agentic_proteins/py.typed, packages/bijux-proteomics-core/src/bijux_proteomics/py.typed, packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed, packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed, packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed, packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed, packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed, packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed, packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed, packages/proteomics-core/src/proteomics_core/py.typed, packages/proteomics-foundation/src/proteomics_foundation/py.typed, packages/proteomics-intelligence/src/proteomics_intelligence/py.typed, packages/proteomics-knowledge/src/proteomics_knowledge/py.typed, packages/proteomics-lab/src/proteomics_lab/py.typed, packages/proteomics-runtime/src/proteomics_runtime/py.typed, packages/proteomics/src/proteomics/py.typed
10/10Reproducible environment — lockfile
0/10Demonstrated agent practice — no agent-authored commits among the last 100
5/8Automated maintenance — dependency automation configured, none observed in the sampled commits
10/10OpenSSF Scorecard: Pinned-Dependencies — all dependencies are pinned
Inputs used
has_nixno
has_testsyes
lockfilespackage-lock.json, uv.lock
has_dockerfileno
typed_languageno
bootstrap_filesMakefile
has_devcontainerno
has_linter_configyes
typecheck_configsconfigs/mypy.ini, packages/agentic-proteins/src/agentic_proteins/py.typed, packages/bijux-proteomics-core/src/bijux_proteomics/py.typed, packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed, packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed, packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed, packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed, packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed, packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed, packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed, packages/proteomics-core/src/proteomics_core/py.typed, packages/proteomics-foundation/src/proteomics_foundation/py.typed, packages/proteomics-intelligence/src/proteomics_intelligence/py.typed, packages/proteomics-knowledge/src/proteomics_knowledge/py.typed, packages/proteomics-lab/src/proteomics_lab/py.typed, packages/proteomics-runtime/src/proteomics_runtime/py.typed, packages/proteomics/src/proteomics/py.typed
agent_commit_share0
toolchain_manifests—
dependency_bot_commit_share0

Code legibility for models

82Excellent
How it's scored
27/45Type-checkable code — Python with type-check config (configs/mypy.ini, packages/agentic-proteins/src/agentic_proteins/py.typed, packages/bijux-proteomics-core/src/bijux_proteomics/py.typed, packages/bijux-proteomics-dev/src/bijux_proteomics_dev/py.typed, packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation/py.typed, packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence/py.typed, packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge/py.typed, packages/bijux-proteomics-lab/src/bijux_proteomics_lab/py.typed, packages/bijux-proteomics-runtime/src/bijux_proteomics_runtime/py.typed, packages/bijux-proteomics/src/bijux_proteomics_alias/py.typed, packages/proteomics-core/src/proteomics_core/py.typed, packages/proteomics-foundation/src/proteomics_foundation/py.typed, packages/proteomics-intelligence/src/proteomics_intelligence/py.typed, packages/proteomics-knowledge/src/proteomics_knowledge/py.typed, packages/proteomics-lab/src/proteomics_lab/py.typed, packages/proteomics-runtime/src/proteomics_runtime/py.typed, packages/proteomics/src/proteomics/py.typed)
54.8/55Manageable file sizes — 12/3,669 source files over 60KB
Inputs used
primary_languagePython
largest_source_bytes576,731
source_files_sampled3,669
oversized_source_files12

Machine-readable interfaces

40Weak
How it's scored
0/40API schema (OpenAPI/GraphQL/proto)
0/20MCP server
40/40Runnable examples — examples
Inputs used
example_dirsexamples
has_mcp_signalno
api_schema_files—
interfaces_expected_ofnetwork-service

Key facts

2GitHub stars
1contributors
7,134commits, last 12 months
4days since last push
5releases
1bus factor
0open issues
npm, PyPIpackage ecosystems

Data collection warnings

  • Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
  • Could not fetch pypi package 'bijux-proteomics-repository' from its registry
  • pypi download statistics for 'agentic-proteins' unavailable this scan (stats endpoint failed after retries); adoption may be under-evidenced
  • pypi download statistics for 'bijux-proteomics' unavailable this scan (stats endpoint failed after retries); adoption may be under-evidenced
  • pypi download statistics for 'proteomics-runtime' unavailable this scan (stats endpoint failed after retries); adoption may be under-evidenced
  • Could not fetch pypi package 'bijux-proteomics-dev' from its registry
  • pypi download statistics for 'bijux-proteomics-lab' unavailable this scan (stats endpoint failed after retries); adoption may be under-evidenced

More detail

OpenSSF Scorecard 5.3 / 10
5.3aggregate

Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).Scorecard v5.5.0 · 2026-09-08 15:27 UTC

10Binary-Artifactsno binaries found in the repo
4Branch-Protectionbranch protection is not maximal on development and all release branches
10CI-Tests3 out of 3 merged PRs checked by a CI test -- score normalized to 10
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
0Code-ReviewFound 0/3 approved changesets -- score normalized to 0
0Contributorsproject has 0 contributing companies or organizations -- score normalized to 0
10Dangerous-Workflowno dangerous workflow patterns detected
10Dependency-Update-Toolupdate tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
10Maintained30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
10Packagingpackaging workflow detected
10Pinned-Dependenciesall dependencies are pinned
0SASTSAST tool is not run on all commits -- score normalized to 0
10Security-Policysecurity policy file detected
0Signed-ReleasesProject has not signed or included provenance with any releases.
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
0Vulnerabilities26 existing vulnerabilities detected
Direct dependencies 59
RegistryPackageVersion constraintManifest
PyPIbijux-proteomics-core>=0.3.8,<0.4.0packages/agentic-proteins/pyproject.toml
PyPIbijux-proteomics-runtime>=0.3.8,<0.4.0packages/agentic-proteins/pyproject.toml
PyPIclick>=8.1packages/bijux-proteomics-core/pyproject.toml
PyPIpydantic>=2.0.2packages/bijux-proteomics-core/pyproject.toml
PyPInumpy>=1.26,<3.0packages/bijux-proteomics-core/pyproject.toml
PyPIbiopython>=1.83packages/bijux-proteomics-core/pyproject.toml
PyPIdefusedxml>=0.7.1,<1.0packages/bijux-proteomics-core/pyproject.toml
PyPIloguru>=0.7packages/bijux-proteomics-core/pyproject.toml
PyPIbijux-proteomics-foundation>=0.3.8packages/bijux-proteomics-core/pyproject.toml
PyPIagentic-proteins>=0.3.8packages/bijux-proteomics-dev/pyproject.toml
PyPIbiopython>=1.85,<2.0packages/bijux-proteomics-dev/pyproject.toml
PyPIhuggingface-hub>=0.24,<2.0packages/bijux-proteomics-dev/pyproject.toml
PyPIidna>=3.15,<4.0packages/bijux-proteomics-dev/pyproject.toml
PyPIpackaging>=24.0,<27.0packages/bijux-proteomics-dev/pyproject.toml
PyPIPyYAML>=6.0,<7.0packages/bijux-proteomics-dev/pyproject.toml
PyPIrequests>=2.32,<3.0packages/bijux-proteomics-dev/pyproject.toml
PyPIurllib3>=2.7.0,<3.0packages/bijux-proteomics-dev/pyproject.toml
PyPIpydantic>=2.0.2packages/bijux-proteomics-foundation/pyproject.toml
PyPIpydantic>=2.0.2packages/bijux-proteomics-intelligence/pyproject.toml
PyPInumpy>=1.26,<3.0packages/bijux-proteomics-intelligence/pyproject.toml
PyPIloguru>=0.7packages/bijux-proteomics-intelligence/pyproject.toml
PyPIbijux-proteomics-foundation>=0.3.8packages/bijux-proteomics-intelligence/pyproject.toml
PyPIbijux-proteomics-core>=0.3.8packages/bijux-proteomics-intelligence/pyproject.toml
PyPIbijux-proteomics-knowledge>=0.3.8packages/bijux-proteomics-intelligence/pyproject.toml
PyPIpydantic>=2.0.2packages/bijux-proteomics-knowledge/pyproject.toml
PyPIbijux-proteomics-foundation>=0.3.8packages/bijux-proteomics-knowledge/pyproject.toml
PyPIbijux-proteomics-core>=0.3.8packages/bijux-proteomics-knowledge/pyproject.toml
PyPIpydantic>=2.0.2packages/bijux-proteomics-lab/pyproject.toml
PyPIbijux-proteomics-foundation>=0.3.8packages/bijux-proteomics-lab/pyproject.toml
PyPIbijux-proteomics-core>=0.3.8packages/bijux-proteomics-lab/pyproject.toml
PyPIbijux-proteomics-knowledge>=0.3.8packages/bijux-proteomics-lab/pyproject.toml
PyPIrequests>=2.31packages/bijux-proteomics-runtime/pyproject.toml
PyPIbiopython>=1.83packages/bijux-proteomics-runtime/pyproject.toml
PyPIclick>=8.1packages/bijux-proteomics-runtime/pyproject.toml
PyPIfastapi>=0.115packages/bijux-proteomics-runtime/pyproject.toml
PyPIstarlette>=1.3.1,<2.0packages/bijux-proteomics-runtime/pyproject.toml
PyPIuvicorn>=0.30packages/bijux-proteomics-runtime/pyproject.toml
PyPIpydantic>=2.0.2packages/bijux-proteomics-runtime/pyproject.toml
PyPIloguru>=0.7packages/bijux-proteomics-runtime/pyproject.toml
PyPIslowapi>=0.1packages/bijux-proteomics-runtime/pyproject.toml
PyPIbijux-proteomics-foundation>=0.3.8packages/bijux-proteomics-runtime/pyproject.toml
PyPIbijux-proteomics-core>=0.3.8packages/bijux-proteomics-runtime/pyproject.toml
PyPIbijux-proteomics-knowledge>=0.3.8packages/bijux-proteomics-runtime/pyproject.toml
PyPIbijux-proteomics-intelligence>=0.3.8packages/bijux-proteomics-runtime/pyproject.toml
PyPIbijux-proteomics-lab>=0.3.8packages/bijux-proteomics-runtime/pyproject.toml
PyPIbijux-proteomics-core>=0.3.8,<0.4.0packages/bijux-proteomics/pyproject.toml
PyPIbijux-proteomics-foundation>=0.3.8,<0.4.0packages/proteomics-core/pyproject.toml
PyPIbijux-proteomics-core>=0.3.8,<0.4.0packages/proteomics-core/pyproject.toml
PyPIbijux-proteomics-foundation>=0.3.8,<0.4.0packages/proteomics-foundation/pyproject.toml
PyPIbijux-proteomics-foundation>=0.3.8,<0.4.0packages/proteomics-intelligence/pyproject.toml
PyPIbijux-proteomics-intelligence>=0.3.8,<0.4.0packages/proteomics-intelligence/pyproject.toml
PyPIbijux-proteomics-foundation>=0.3.8,<0.4.0packages/proteomics-knowledge/pyproject.toml
PyPIbijux-proteomics-knowledge>=0.3.8,<0.4.0packages/proteomics-knowledge/pyproject.toml
PyPIbijux-proteomics-foundation>=0.3.8,<0.4.0packages/proteomics-lab/pyproject.toml
PyPIbijux-proteomics-lab>=0.3.8,<0.4.0packages/proteomics-lab/pyproject.toml
PyPIbijux-proteomics-foundation>=0.3.8,<0.4.0packages/proteomics-runtime/pyproject.toml
PyPIbijux-proteomics-runtime>=0.3.8,<0.4.0packages/proteomics-runtime/pyproject.toml
PyPIbijux-proteomics-foundation>=0.3.8,<0.4.0packages/proteomics/pyproject.toml
PyPIbijux-proteomics-core>=0.3.8,<0.4.0packages/proteomics/pyproject.toml
All dependencies 447

Full resolved dependency set from the GitHub dependency graph: 40 direct and 407 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.

RegistryPackageVersionRelation
PyPIagentic-proteins—direct
PyPIbijux-proteomics-core—direct
PyPIbijux-proteomics-foundation—direct
PyPIbijux-proteomics-intelligence—direct
PyPIbijux-proteomics-knowledge—direct
PyPIbijux-proteomics-lab—direct
PyPIbijux-proteomics-runtime—direct
PyPIbiopython—direct
PyPIbiopython1.87direct
PyPIclick—direct
PyPIclick8.3.2direct
PyPIdefusedxml—direct
PyPIdefusedxml0.7.1direct
PyPIfastapi—direct
PyPIfastapi0.135.3direct
PyPIhuggingface-hub—direct
PyPIhuggingface-hub1.11.0direct
PyPIidna—direct
PyPIidna3.18direct
PyPIloguru—direct
PyPIloguru0.7.3direct
PyPInumpy—direct
PyPInumpy1.26.4direct
PyPInumpy2.4.4direct
PyPIpackaging—direct
PyPIpackaging25.0direct
PyPIpydantic—direct
PyPIpydantic2.12.5direct
PyPIpyyaml—direct
PyPIpyyaml6.0.3direct
PyPIrequests—direct
PyPIrequests2.33.1direct
PyPIslowapi—direct
PyPIslowapi0.1.9direct
PyPIstarlette—direct
PyPIstarlette1.3.1direct
PyPIurllib3—direct
PyPIurllib32.7.0direct
PyPIuvicorn—direct
PyPIuvicorn0.44.0direct
npm@borewit/text-codec0.2.2indirect
npm@inquirer/core6.0.0indirect
npm@inquirer/select1.3.3indirect
npm@inquirer/type1.5.5indirect
npm@lukeed/csprng1.1.0indirect
npm@nestjs/axios4.0.1indirect
npm@nestjs/common11.1.28indirect
npm@nestjs/core11.1.28indirect
npm@nuxtjs/opencollective0.3.2indirect
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npmnetmask2.1.1indirect
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npmproxy-from-env2.1.0indirect
npmquickjs-wasi2.2.0indirect
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npmrun-async3.0.0indirect
npmrxjs7.8.2indirect
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npmsignal-exit4.1.0indirect
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npmsocks-proxy-agent10.1.0indirect
npmsource-map0.6.1indirect
npmstring-width4.2.3indirect
npmstring-width7.2.0indirect
npmstrip-ansi6.0.1indirect
npmstrip-ansi7.2.0indirect
npmstrtok310.3.5indirect
npmsupports-color10.2.2indirect
npmsupports-color7.2.0indirect
npmtoken-types6.1.2indirect
npmtr460.0.3indirect
npmtree-kill1.2.2indirect
npmtslib2.8.1indirect
npmtype-fest0.21.3indirect
npmuid2.0.2indirect
npmuint8array-extras1.5.0indirect
npmundici-types6.21.0indirect
npmundici-types7.18.2indirect
npmuniversalify2.0.1indirect
npmwcwidth1.0.1indirect
npmwebidl-conversions3.0.1indirect
npmwhatwg-url5.0.0indirect
npmwrap-ansi6.2.0indirect
npmwrap-ansi9.0.2indirect
npmy18n5.0.8indirect
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PyPIaiohappyeyeballs2.6.1indirect
PyPIaiohttp3.14.1indirect
PyPIaiosignal1.4.0indirect
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PyPIanyio4.13.0indirect
PyPIarq0.27.0indirect
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PyPIasync-timeout5.0.1indirect
PyPIattrs26.1.0indirect
PyPIbabel2.18.0indirect
PyPIbackports-tarfile1.2.0indirect
PyPIbackports-zstd1.3.0indirect
PyPIbackrefs6.2indirect
PyPIbandit—indirect
PyPIbandit1.9.4indirect
PyPIboolean-py5.0indirect
PyPIbuild—indirect
PyPIbuild1.4.2indirect
PyPIcachecontrol0.14.4indirect
PyPIcertifi2026.2.25indirect
PyPIcffi2.0.0indirect
PyPIchardet7.4.1indirect
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PyPIcodespell—indirect
PyPIcodespell2.4.2indirect
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PyPIcyclonedx-python-lib11.7.0indirect
PyPIdataclasses-json0.6.7indirect
PyPIdeprecated1.3.1indirect
PyPIdeptry—indirect
PyPIdeptry0.25.1indirect
PyPIdistlib0.4.0indirect
PyPIdistro1.9.0indirect
PyPIdocutils0.22.4indirect
PyPIeinops—indirect
PyPIeinops0.8.2indirect
PyPIfilelock3.25.2indirect
PyPIfrozenlist1.8.0indirect
PyPIfsspec2026.3.0indirect
PyPIgemmi0.7.5indirect
PyPIghp-import2.1.0indirect
PyPIgitdb4.0.12indirect
PyPIgitpython—indirect
PyPIgitpython3.1.55indirect
PyPIgreenlet3.4.0indirect
PyPIh110.16.0indirect
PyPIhatch—indirect
PyPIhatch1.16.5indirect
PyPIhatch-fancy-pypi-readme—indirect
PyPIhatch-vcs—indirect
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PyPIhatchling1.30.1indirect
PyPIhf-xet1.4.3indirect
PyPIhiredis3.3.1indirect
PyPIhttpcore1.0.9indirect
PyPIhttpx—indirect
PyPIhttpx0.28.1indirect
PyPIhttpx-sse0.4.3indirect
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PyPIhypothesis—indirect
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PyPIinterrogate1.7.0indirect
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PyPIjinja23.1.6indirect
PyPIjsonpatch1.33indirect
PyPIjsonpointer3.1.1indirect
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PyPIjsonschema-specifications2025.9.1indirect
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PyPIlangchain-classic1.0.7indirect
PyPIlangchain-community—indirect
PyPIlangchain-community0.4.1indirect
PyPIlangchain-core—indirect
PyPIlangchain-core1.4.0indirect
PyPIlangchain-huggingface—indirect
PyPIlangchain-huggingface1.2.1indirect
PyPIlangchain-protocol0.0.15indirect
PyPIlangchain-text-splitters—indirect
PyPIlangchain-text-splitters1.1.2indirect
PyPIlangsmith—indirect
PyPIlangsmith0.9.3indirect
PyPIlazy-object-proxy1.12.0indirect
PyPIlibcst1.8.6indirect
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PyPIlicense-expression30.4.4indirect
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PyPImarkdown3.10.2indirect
PyPImarkdown-it-py4.0.0indirect
PyPImarkupsafe3.0.3indirect
PyPImarshmallow3.26.2indirect
PyPImdurl0.1.2indirect
PyPImergedeep1.3.4indirect
PyPImkdocs—indirect
PyPImkdocs1.6.1indirect
PyPImkdocs-autorefs—indirect
PyPImkdocs-autorefs1.4.4indirect
PyPImkdocs-get-deps0.2.2indirect
PyPImkdocs-git-revision-date-localized-plugin—indirect
PyPImkdocs-git-revision-date-localized-plugin1.5.1indirect
PyPImkdocs-material—indirect
PyPImkdocs-material9.7.6indirect
PyPImkdocs-material-extensions1.3.1indirect
PyPImkdocs-redirects—indirect
PyPImkdocs-redirects1.2.3indirect
PyPImore-itertools11.0.1indirect
PyPImsgpack—indirect
PyPImsgpack1.2.1indirect
PyPImsgspec0.20.0indirect
PyPImultidict6.7.1indirect
PyPImypy—indirect
PyPImypy2.1.0indirect
PyPImypy-extensions1.1.0indirect
PyPInetworkx3.6.1indirect
PyPInh30.3.4indirect
PyPIninja1.13.0indirect
PyPInodeenv1.10.0indirect
PyPIopenapi-schema-validator0.8.1indirect
PyPIopenapi-spec-validator0.8.4indirect
PyPIopenprotein-python—indirect
PyPIopenprotein-python0.12.1indirect
PyPIorjson3.11.8indirect
PyPIpackageurl-python0.17.6indirect
PyPIpaginate0.5.7indirect
PyPIpandas2.3.3indirect
PyPIpathable0.5.0indirect
PyPIpathspec1.0.4indirect
PyPIpexpect4.9.0indirect
PyPIpip26.1.2indirect
PyPIpip-api0.0.34indirect
PyPIpip-audit—indirect
PyPIpip-audit2.10.0indirect
PyPIpip-requirements-parser32.0.1indirect
PyPIplatformdirs4.9.4indirect
PyPIpluggy1.6.0indirect
PyPIprance25.4.8.0indirect
PyPIpropcache0.4.1indirect
PyPIproperdocs1.6.7indirect
PyPIptyprocess0.7.0indirect
PyPIpy1.11.0indirect
PyPIpy-cpuinfo9.0.0indirect
PyPIpy-serializable2.1.0indirect
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PyPIpyarrow24.0.0indirect
PyPIpycnite2024.7.31indirect
PyPIpycparser3.0indirect
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PyPIpydocstyle6.3.0indirect
PyPIpydot4.0.1indirect
PyPIpyfakefs6.1.6indirect
PyPIpygments2.20.0indirect
PyPIpyjwt2.13.0indirect
PyPIpymdown-extensions—indirect
PyPIpymdown-extensions11.0indirect
PyPIpyparsing3.3.2indirect
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PyPIpyright—indirect
PyPIpyright1.1.409indirect
PyPIpytest—indirect
PyPIpytest9.1.1indirect
PyPIpytest-asyncio—indirect
PyPIpytest-asyncio1.4.0indirect
PyPIpytest-benchmark—indirect
PyPIpytest-benchmark5.2.3indirect
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PyPIpytest-cov7.1.0indirect
PyPIpytest-mock3.15.1indirect
PyPIpytest-rerunfailures13.0indirect
PyPIpytest-timeout—indirect
PyPIpytest-timeout2.4.0indirect
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PyPIruff0.15.9indirect
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PyPItransformers5.5.4indirect
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PyPItyper0.24.1indirect
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PyPItypes-defusedxml0.7.0.20260408indirect
PyPItypes-orjson3.6.2indirect
PyPItypes-pexpect4.9.0.20260408indirect
PyPItypes-psutil6.1.0.20241221indirect
PyPItypes-pyyaml—indirect
PyPItypes-pyyaml6.0.12.20260408indirect
PyPItypes-requests—indirect
PyPItypes-requests2.33.0.20260408indirect
PyPItyping-extensions4.15.0indirect
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PyPIuserpath1.9.2indirect
PyPIuuid-utils0.14.1indirect
PyPIuv0.11.24indirect
PyPIvirtualenv21.2.0indirect
PyPIvulture—indirect
PyPIvulture2.16indirect
PyPIwatchdog6.0.0indirect
PyPIwebsockets16.0indirect
PyPIwin32-setctime1.2.0indirect
PyPIwrapt2.1.2indirect
PyPIxxhash3.6.0indirect
PyPIyarl1.23.0indirect
PyPIzipp3.23.0indirect
PyPIzstandard0.23.0indirect
Dependency advisories 0

Installing pypi:bijux-proteomics@0.3.8 pulls in 12 packages, direct and transitive: 0 carry known advisories, of which 0 are direct dependencies.

No known advisories affect the assessed dependencies.

An advisory means the version recorded in the dependency graph falls inside an advisory’s affected range. Reachability is not analysed, and the graph includes development and test pins — a finding may concern tooling rather than shipped software.

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