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#single-cell

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

7 records
Tagged “single-cell”Ranked by health index
PyPI
76Goodhealth index
scverse/rapids-singlecell
rapids-singlecell: GPU-accelerated framework for scRNA analysis
Python · Cuda★ 386Jul 20, 2026
MITJul 20, 2026 · metrics 1.13.0
PyPI
74Goodhealth index
saezlab/liana-py
LIANA+: an all-in-one framework for cell-cell communication
Python★ 305Jul 21, 2026
BSD-3-ClauseJul 21, 2026 · metrics 1.13.0
PyPI
73Goodhealth index
ablab/IsoQuant
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Python★ 233Jul 17, 2026
Custom licenseJul 17, 2026 · metrics 1.13.0
crates.io · npm
67Moderatehealth index
COMBINE-lab/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Rust★ 918Jul 16, 2026
BSD-3-ClauseJul 16, 2026 · metrics 1.13.0
PyPI · Go
60Moderatehealth index
the-omics-os/lobster
The self-evolving agentic framework for bioinformatics
Python★ 42Jul 15, 2026
Custom licenseJul 15, 2026 · metrics 1.13.0
PyPI
50Moderatehealth index
jamesjcai/scGEAToolbox
scGEAToolbox: Matlab toolbox for single-cell gene expression analyses
MATLAB★ 30Jul 20, 2026
MITJul 20, 2026 · metrics 1.13.0
PyPI · npm
40At riskhealth index
smartsbio/smarts-bio-jupyterlab
No repository description published.
TypeScript★ 1Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0