PyPI
scverse/pertpy
Single-cell perturbation analysis
MITAug 24, 2026 · metrics 2.10.0
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Catalogue tag
#single-cell
Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.
13 records
PyPI
scverse/rapids-singlecell
rapids-singlecell: GPU-accelerated framework for scRNA analysis
MITJul 20, 2026 · metrics 2.10.0
PyPI
saezlab/liana-py
LIANA+: an all-in-one framework for cell-cell communication
BSD-3-ClauseJul 21, 2026 · metrics 2.10.0
npm
vitessce/vitessce
Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
MITJul 26, 2026 · metrics 2.10.0
PyPI
ablab/IsoQuant
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Custom licenseJul 17, 2026 · metrics 2.10.0
crates.io · npm
COMBINE-lab/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
BSD-3-ClauseJul 16, 2026 · metrics 2.10.0
PyPI
cafferychen777/mLLMCelltype
Cell type annotation for single-cell RNA-seq using multi-LLM consensus
MITAug 2, 2026 · metrics 2.10.0
crates.io · npm · PyPI
COMBINE-lab/simpleaf
A rust framework to make using alevin-fry even simpler
BSD-3-ClauseAug 22, 2026 · metrics 2.10.0
PyPI · Go
the-omics-os/lobster
The self-evolving agentic framework for bioinformatics
Custom licenseJul 15, 2026 · metrics 2.10.0
PyPI · npm
vitessce/vitessce-python
Python API and Jupyter widget for Vitessce
MITJul 26, 2026 · metrics 2.10.0
PyPI
jamesjcai/scGEAToolbox
scGEAToolbox: Matlab toolbox for single-cell gene expression analyses
MITJul 20, 2026 · metrics 2.10.0
PyPI · npm
smartsbio/smarts-bio-jupyterlab
No repository description published.
MITJul 17, 2026 · metrics 2.10.0
PyPI
Teichlab/Genes2Genes
Aligning gene expression trajectories of single-cell reference and query systems
MITJul 26, 2026 · metrics 2.10.0