PyPI
scverse/pertpy
Single-cell perturbation analysis
MITAug 24, 2026 · metrics 2.10.0
All tags
Catalogue tag
#single-cell
Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.
16 records
PyPI
PixelgenTechnologies/pixelator
A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) and Proximity Network (PNA) assays.
MITOct 19, 2026 · metrics 2.10.0
PyPI
scverse/liana
LIANA+: an all-in-one framework for cell-cell communication
BSD-3-ClauseSep 12, 2026 · metrics 2.10.0
PyPI
scverse/decoupler
Python package to perform enrichment analysis from omics data.
BSD-3-ClauseSep 18, 2026 · metrics 2.10.0
PyPI
scverse/rapids-singlecell
rapids-singlecell: GPU-accelerated framework for scRNA analysis
MITSep 12, 2026 · metrics 2.10.0
PyPI
ablab/IsoQuant
A universal toolkit for upstream processing of long RNA reads
Custom licenseSep 10, 2026 · metrics 2.10.0
npm
vitessce/vitessce
Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
MITSep 13, 2026 · metrics 2.10.0
crates.io · npm
COMBINE-lab/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
BSD-3-ClauseSep 8, 2026 · metrics 2.10.0
PyPI
cafferychen777/mLLMCelltype
Cell type annotation for single-cell RNA-seq using multi-LLM consensus
MITSep 15, 2026 · metrics 2.10.0
PyPI · Go
the-omics-os/lobster
The self-evolving agentic framework for bioinformatics
Custom licenseSep 8, 2026 · metrics 2.10.0
crates.io · npm · PyPI
COMBINE-lab/simpleaf
A rust framework to make using alevin-fry even simpler
BSD-3-ClauseOct 20, 2026 · metrics 2.10.0
PyPI · npm
vitessce/vitessce-python
Python API and Jupyter widget for Vitessce
MITSep 13, 2026 · metrics 2.10.0
PyPI
jamesjcai/scGEAToolbox
scGEAToolbox: Matlab toolbox for single-cell gene expression analyses
MITSep 11, 2026 · metrics 2.10.0
PyPI
dawe/schist
An interface for Nested Stochastic Block Model for single cell analysis
BSD-3-ClauseOct 18, 2026 · metrics 2.10.0
PyPI
Teichlab/Genes2Genes
Aligning gene expression trajectories of single-cell reference and query systems
MITSep 13, 2026 · metrics 2.10.0
PyPI · npm
smartsbio/smarts-bio-jupyterlab
No repository description published.
MITSep 9, 2026 · metrics 2.10.0