Публічний реєстрДобрий
Звіт про здоров'я програмного забезпеченнясхема 0.23.0 · метрики 1.13.0 · 2026-07-21 21:22 UTC
saezlab / liana-py
LIANA+: an all-in-one framework for cell-cell communication
saezlab/liana-py має індекс здоров’я 74 зі 100, що відповідає смузі «Добрий». Найвищий показник — Engineering Quality (96/100), найнижчий — AI Readiness (38/100). Останнє оновлення було 5 днів тому. Більшість нещодавньої роботи виконує один учасник.
74
загалом / 100Індекс здоров'я програмного забезпечення
Метрики згруповано у зважені категорії на шкалі 1–100. Загальна оцінка починається як їхнє середнє; коли публічні дані активують Політику юрисдикцій високого ризику, рейтинг коригується й отримує верхню межу 49 («Під ризиком»). Готовність до ШІ не входить до індексу.
74
Відмінний85-100Зразковий; відповідає практично всім перевіреним критеріям
Добрий70-84Здоровий; незначні прогалини
Помірний50-69Прийнятний, але з помітними прогалинами; рекомендовано перевірку
У зоні ризику30-49Суттєві слабкі місця; впровадження потребує обережності
Критичний1-29Серйозні проблеми (покинутий, єдиний мейнтейнер, без базової гігієни)
Профіль оцінок
Кожна вісь — окрема категорія. Форма важить більше, ніж середнє: здоровий об'єкт заповнює всю фігуру, тоді як профіль із піками та провалами означає, що сила в одному вимірі маскує ризик в іншому.
Власність
Saez LabОрганізація
487 підписників306 публічних репозиторіївз лист. 2014 р.
За цим репозиторієм стоїть організація — спільна, підзвітна опіка, здатна пережити будь-якого окремого мейнтейнера.
Пакетні екосистеми
| Реєстр | Пакет | Версія | Завантажень / міс | Версії | Остання публікація |
|---|---|---|---|---|---|
| PyPI | liana | 1.8.1 | - | 29 | 5 днів тому |
Метрики за категоріями
Життєздатність
Чи живий проєкт — чи пишеться код і чи виходять релізи?
84
Активність розробки
79Добрий
Як обчислюється оцінка
| 36/36 | Свіжість push — останній push 5 дн. тому |
| 15.2/36 | Ритм комітів — 22/52 тижнів із комітами |
| 18/18 | Обсяг комітів — 181 комітів за останній рік |
| 10/10 | OpenSSF Scorecard: Maintained — 30 commit(s) and 7 issue activity found in the last 90 days -- score normalized to 10 |
Використані вхідні дані
| commits_last_year | 181 |
| human_commit_share | 0,97 |
| days_since_last_push | 5 |
| active_weeks_last_year | 22 |
Дисципліна релізів
92Відмінний
Як обчислюється оцінка
| 27/27 | Випускає релізи — опубліковано 24 релізів |
| 36/36 | Свіжість релізів — останній реліз 5 дн. тому |
| 19.8/27 | Ритм релізів — реліз кожні ~60,5 дн. |
| 0/10 | OpenSSF Scorecard: Signed-Releases — немає даних |
Використані вхідні дані
| releases_count | 24 |
| latest_release_tag | v1.8.1 |
| releases_from_tags | ні |
| days_since_latest_release | 5 |
| mean_days_between_releases | 60,5 |
Виключено з оцінювання (немає даних або не застосовно): OpenSSF Scorecard: Signed-Releases. Залишкові ваги перенормовано.
Спільнота та впровадження
Чи має проєкт користувачів, завантаження, увагу та влаштовані умови для контриб’юторів?
61
Популярність і впровадження
53Помірний
Як обчислюється оцінка
| 40.3/60 | Зірки — 305 зірок |
| 12.7/25 | Форки — 34 форків |
| 0/15 | Спостерігачі — 1 спостерігачів |
Використані вхідні дані
| forks | 34 |
| stars | 305 |
| watchers | 1 |
| growth_state | organic |
| growth_factor_pct | 100 |
Здоров'я спільноти
70Добрий
Як обчислюється оцінка
| 22.5/22.5 | README |
| 22.5/22.5 | Ліцензія — визнана ліцензія (BSD-3-Clause) |
| 18/18 | Настанови CONTRIBUTING |
| 0/13.5 | Кодекс поведінки |
| 0/7.2 | Шаблон issue |
| 0/6.3 | Шаблон PR |
Використані вхідні дані
| has_readme | так |
| has_license | так |
| has_contributing | так |
| has_issue_template | ні |
| has_code_of_conduct | ні |
| has_pull_request_template | ні |
Сталість та врядування
Чи переживе проєкт своїх людей — бас-фактор, реактивність, хто за ним стоїть і як супроводжуються пакети?
68
Стійкість мейнтейнерів (бас-фактор)
41У зоні ризику
Як обчислюється оцінка
| 9/54 | Бас-фактор — на 1 контриб’ютор(ів) припадає половина всіх комітів |
| 8.8/22.5 | Розподіл комітів — головний контриб’ютор — автор 61% комітів |
| 13.5/13.5 | Широта контриб’юторів — 16 контриб’юторів |
| 10/10 | OpenSSF Scorecard: Contributors — project has 15 contributing companies or organizations |
Використані вхідні дані
| bus_factor | 1 |
| contributors_sampled | 16 |
| top_contributor_share | 0,608 |
Реактивність на issue та PR
70Добрий
Як обчислюється оцінка
| 39.7/46.8 | Вирішення issue — закрито 85% issue |
| 27.5/38.3 | Прийняття PR — злито 46/64 вирішених PR |
| 3/15 | OpenSSF Scorecard: Code-Review — Found 2/7 approved changesets -- score normalized to 2 |
Використані вхідні дані
| merged_prs | 46 |
| open_issues | 27 |
| closed_issues | 153 |
| issue_closed_ratio | 0,85 |
| closed_unmerged_prs | 18 |
Власність та опіка
74Добрий
Як обчислюється оцінка
| 30/30 | Підтримка власника — у власності організації |
| 0/20 | Верифікований домен |
| 19.3/25 | Охоплення власника — 487 підписників у saezlab |
| 25/25 | Послужний список — 306 публічних репозиторіїв, вік облікового запису ~11 р. |
Використані вхідні дані
| followers | 487 |
| owner_type | Organization |
| is_verified | — |
| owner_login | saezlab |
| public_repos | 306 |
| account_age_days | 4 254 |
Супровід пакетів
100Відмінний
Як обчислюється оцінка
| 25/25 | Опубліковано й доступно — 1 пакет(ів) у pypi |
| 35/35 | Свіжість публікацій — остання публікація 5 дн. тому |
| 20/20 | Історія версій — 29 опублікованих версій |
| 20/20 | Не застарілий — активний, не deprecated і не yanked |
Використані вхідні дані
| packages | liana |
| ecosystems | pypi |
| any_deprecated | ні |
| min_days_since_publish | 5 |
Інженерна якість
Чи наявні базові інженерні практики та документація?
96
Інженерні практики
94Відмінний
Як обчислюється оцінка
| 24/24 | Процеси CI — 3 процес(ів) CI |
| 24/24 | Наявні тести |
| 16/16 | Конфігурація лінтера |
| 9.6/9.6 | Pre-commit-хуки |
| 0/6.4 | .editorconfig |
| 20/20 | OpenSSF Scorecard: CI-Tests — 4 out of 4 merged PRs checked by a CI test -- score normalized to 10 |
Використані вхідні дані
| has_ci | так |
| has_tests | так |
| has_editorconfig | ні |
| has_linter_config | так |
| has_precommit_config | так |
Документація
100Відмінний
Як обчислюється оцінка
| 30/30 | README |
| 25/25 | Каталог документації |
| 15/15 | Сайт документації / домашня сторінка — http://liana-py.readthedocs.io/ |
| 10/10 | Опис репозиторію |
| 10/10 | Теми — 7 тем |
| 10/10 | Wiki |
Використані вхідні дані
| topics | cell-cell-communication, ligand-receptor, python, single-cell, single-cell-rna-seq, spatial, spatialomics |
| has_wiki | так |
| homepage | http://liana-py.readthedocs.io/ |
| has_readme | так |
| has_docs_dir | так |
| has_description | так |
Безпека
Чи міцні видимі практики безпеки й ланцюга постачання, без непослабленої пов’язаності з юрисдикціями високого ризику?
54
Стан безпеки
43У зоні ризику
Як обчислюється оцінка
| 7.5/7.5 | Binary-Artifacts — no binaries found in the repo |
| 0/7.5 | Branch-Protection — немає даних |
| 2.5/2.5 | CI-Tests — 4 out of 4 merged PRs checked by a CI test -- score normalized to 10 |
| 0/2.5 | CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected |
| 1.5/7.5 | Code-Review — Found 2/7 approved changesets -- score normalized to 2 |
| 2.5/2.5 | Contributors — project has 15 contributing companies or organizations |
| 10/10 | Dangerous-Workflow — no dangerous workflow patterns detected |
| 0/7.5 | Dependency-Update-Tool — no update tool detected |
| 0/5 | Fuzzing — project is not fuzzed |
| 2.5/2.5 | Ліцензія — license file detected |
| 7.5/7.5 | Maintained — 30 commit(s) and 7 issue activity found in the last 90 days -- score normalized to 10 |
| 5/5 | Packaging — packaging workflow detected |
| 0/5 | Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
| 0/5 | SAST — SAST tool is not run on all commits -- score normalized to 0 |
| 0/5 | Security-Policy — security policy file not detected |
| 0/7.5 | Signed-Releases — немає даних |
| 0/7.5 | Token-Permissions — detected GitHub workflow tokens with excessive permissions |
| 0/7.5 | Vulnerabilities — 41 existing vulnerabilities detected |
Використані вхідні дані
| source | openssf_scorecard |
| checks_evaluated | 16 |
| scorecard_version | v5.5.0 |
| checks_inconclusive | 2 |
| scorecard_aggregate | 4,3 |
Виключено з оцінювання (немає даних або не застосовно): branch_protection, signed_releases. Залишкові ваги перенормовано.
Сповіщення про залежності
100Відмінний
Як обчислюється оцінка
| 35/35 | Прямі залежності без відомих сповіщень — жодна пряма залежність не має відомих сповіщень |
| 0/25 | Непрямі залежності без відомих сповіщень — транзитивний набір не відокремлюється від залежностей розробки й тестування в цьому обсязі |
| 0/40 | Немає задавнених сповіщень — жодне сповіщення не має дати публікації |
Використані вхідні дані
| source | osv |
| advisories | 75 |
| affected_packages | 13 |
| assessed_packages | 204 |
| unassessed_packages | 0 |
| affected_by_severity | critical 2, high 6, moderate 4, low 1 |
| direct_affected_packages | 0 |
Виключено з оцінювання (немає даних або не застосовно): Непрямі залежності без відомих сповіщень, Немає задавнених сповіщень. Залишкові ваги перенормовано. Звірено 204 резолвлених залежностей із OSV. Цей репозиторій не публікує пакета, який резолвить індекс, тож натомість оцінено граф залежностей репозиторію. Цей граф змішує закріплені версії для розробки й тестування зі справді постачаними залежностями, тож оцінюються лише задекларовані runtime-залежності; транзитивні знахідки подаються як контекст і в оцінку не входять. Досяжність не аналізується.
Готовність до ШІ
Наскільки репозиторій оснащений для розробки та супроводу за участі ШІ-агентів? Незалежний, експериментальний бейдж — вага 0.0, тож він подається окремо і не впливає на загальний індекс здоров'я.
38
Контекст і настанови для агентів
7Критичний
Як обчислюється оцінка
| 0/45 | Інструкції для агентів — немає CLAUDE.md / AGENTS.md / правил редактора |
| 0/15 | Машиночитана документація (llms.txt) |
| 6.6/40 | Читабельна історія комітів — намір зазначено у 12 з 97 людських комітів (структурований заголовок або пояснювальний текст) |
Використані вхідні дані
| has_llms_txt | ні |
| legible_history_share | 0,124 |
| agent_instruction_files | — |
| agent_instruction_max_bytes | — |
Як обчислюється оцінка
| 0/18 | Розгортання однією командою |
| 22/22 | Автоматизовані тести |
| 11/11 | Конфігурація лінтера / форматера |
| 0/11 | Статична перевірка типів |
| 10/10 | Відтворюване середовище — lockfile |
| 10/10 | Підтверджена практика роботи з агентами — 10 з останніх 100 комітів створено агентом або з його зазначенням |
| 0/8 | Автоматизоване супроводження — автоматичних оновлень залежностей не виявлено |
| 0/10 | OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
Використані вхідні дані
| has_nix | ні |
| has_tests | так |
| lockfiles | uv.lock |
| has_dockerfile | ні |
| typed_language | ні |
| bootstrap_files | — |
| has_devcontainer | ні |
| has_linter_config | так |
| typecheck_configs | — |
| agent_commit_share | 0,1 |
| toolchain_manifests | — |
| dependency_bot_commit_share | 0 |
Читабельність коду для моделей
55Помірний
Як обчислюється оцінка
| 0/45 | Типізований код — Python без конфігурації перевірки типів |
| 55/55 | Керовані розміри файлів — 0/106 файлів вихідного коду понад 60 КБ |
Використані вхідні дані
| primary_language | Python |
| largest_source_bytes | 30 684 |
| source_files_sampled | 106 |
| oversized_source_files | 0 |
Машиночитні інтерфейси
40У зоні ризику
Як обчислюється оцінка
| 0/40 | Схема API (OpenAPI/GraphQL/proto) |
| 0/20 | Сервер MCP |
| 40/40 | Придатні до запуску приклади — notebooks |
Використані вхідні дані
| example_dirs | notebooks |
| has_mcp_signal | ні |
| api_schema_files | — |
Ключові факти
305зірок GitHub
16контриб'юторів
181комітів за останні 12 місяців
5днів від останнього пушу
24релізів
1бас-фактор
27відкритих issue
PyPIпакетних екосистем
Попередження щодо збору даних
- deps.dev does not index pypi:liana@1.8.1; advisories assessed against the repository dependency graph instead
Докладніше
Історія зірок і форків 305 ★ / 34 ⇿
305Зірки
34Форки
23Релізи
Коли додано кожну зірку й форк — зібрано з GitHub і згруповано за днями. Кумулятивне зростання розміщено просто над денними додаваннями, з яких воно складається, тож їх видно одне проти одного: рівномірне органічне накопичення виглядає зовсім інакше, ніж різкий короткочасний сплеск. Там, де цю різницю можна виміряти, її подано як автентичність росту.
Мажорні 0Мінорні 8Патчі 12
Кожна точка охоплює 4 днів.
OpenSSF Scorecard 4.3 / 10
4.3сукупно
Незалежна, не прив'язана до інструментів оцінка безпеки від відкритого проєкту OpenSSF Scorecard. Кожна перевірка винагороджує практику безпеки, а не інструмент конкретного постачальника. Перевірки, які Scorecard не зміг визначити, позначено н/д і виключено з оцінки безпеки (вони ніколи не зараховуються як нуль).
| 10 | Binary-Artifacts | no binaries found in the repo |
| н/д | Branch-Protection | internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md |
| 10 | CI-Tests | 4 out of 4 merged PRs checked by a CI test -- score normalized to 10 |
| 0 | CII-Best-Practices | no effort to earn an OpenSSF best practices badge detected |
| 2 | Code-Review | Found 2/7 approved changesets -- score normalized to 2 |
| 10 | Contributors | project has 15 contributing companies or organizations |
| 10 | Dangerous-Workflow | no dangerous workflow patterns detected |
| 0 | Dependency-Update-Tool | no update tool detected |
| 0 | Fuzzing | project is not fuzzed |
| 10 | License | license file detected |
| 10 | Maintained | 30 commit(s) and 7 issue activity found in the last 90 days -- score normalized to 10 |
| 10 | Packaging | packaging workflow detected |
| 0 | Pinned-Dependencies | dependency not pinned by hash detected -- score normalized to 0 |
| 0 | SAST | SAST tool is not run on all commits -- score normalized to 0 |
| 0 | Security-Policy | security policy file not detected |
| н/д | Signed-Releases | no releases found |
| 0 | Token-Permissions | detected GitHub workflow tokens with excessive permissions |
| 0 | Vulnerabilities | 41 existing vulnerabilities detected |
Прямі залежності 9
| Реєстр | Пакет | Обмеження версії | Маніфест |
|---|---|---|---|
| PyPI | anndata | >=0.7.4 | pyproject.toml |
| PyPI | mudata | — | pyproject.toml |
| PyPI | scanpy | — | pyproject.toml |
| PyPI | numba | — | pyproject.toml |
| PyPI | tqdm | >=4.0 | pyproject.toml |
| PyPI | docrep | >=0.3.1 | pyproject.toml |
| PyPI | plotnine | >=0.10.1 | pyproject.toml |
| PyPI | session-info2 | — | pyproject.toml |
| PyPI | pandas | <3 | pyproject.toml |
Усі залежності 204
Повний розв'язаний набір залежностей із графа залежностей GitHub: 11 прямих і 193 непрямих (транзитивних) пакетів. Транзитивне замикання є повним, коли в репозиторії закомічено lockfile.
| Реєстр | Пакет | Версія | Зв'язок |
|---|---|---|---|
| PyPI | anndata | 0.11.4 | пряма |
| PyPI | anndata | 0.12.7 | пряма |
| PyPI | docrep | 0.3.2 | пряма |
| PyPI | mudata | 0.3.2 | пряма |
| PyPI | numba | 0.63.1 | пряма |
| PyPI | pandas | 2.3.3 | пряма |
| PyPI | plotnine | 0.15.2 | пряма |
| PyPI | scanpy | 1.11.5 | пряма |
| PyPI | scanpy | 1.12 | пряма |
| PyPI | session-info2 | 0.3 | пряма |
| PyPI | tqdm | 4.67.1 | пряма |
| PyPI | accessible-pygments | 0.0.5 | непряма |
| PyPI | adjusttext | 1.3.0 | непряма |
| PyPI | alabaster | 1.0.0 | непряма |
| PyPI | appnope | 0.1.4 | непряма |
| PyPI | array-api-compat | 1.13.0 | непряма |
| PyPI | asttokens | 3.0.1 | непряма |
| PyPI | attrs | 25.4.0 | непряма |
| PyPI | babel | 2.17.0 | непряма |
| PyPI | backports-tarfile | 1.2.0 | непряма |
| PyPI | beautifulsoup4 | 4.14.3 | непряма |
| PyPI | bump2version | 1.0.1 | непряма |
| PyPI | bumpversion | 0.6.0 | непряма |
| PyPI | cell2cell | 0.8.4 | непряма |
| PyPI | certifi | 2026.1.4 | непряма |
| PyPI | cffi | 2.0.0 | непряма |
| PyPI | cfgv | 3.5.0 | непряма |
| PyPI | charset-normalizer | 3.4.4 | непряма |
| PyPI | click | 8.3.1 | непряма |
| PyPI | colorama | 0.4.6 | непряма |
| PyPI | comm | 0.2.3 | непряма |
| PyPI | contourpy | 1.3.2 | непряма |
| PyPI | contourpy | 1.3.3 | непряма |
| PyPI | corneto | 0.9.1a6 | непряма |
| PyPI | coverage | 7.13.1 | непряма |
| PyPI | cryptography | 46.0.3 | непряма |
| PyPI | cvxpy-base | 1.7.5 | непряма |
| PyPI | cycler | 0.12.1 | непряма |
| PyPI | debugpy | 1.8.19 | непряма |
| PyPI | decorator | 5.2.1 | непряма |
| PyPI | decoupler | 2.1.4 | непряма |
| PyPI | distlib | 0.4.0 | непряма |
| PyPI | docutils | 0.21.2 | непряма |
| PyPI | donfig | 0.8.1.post1 | непряма |
| PyPI | et-xmlfile | 2.0.0 | непряма |
| PyPI | exceptiongroup | 1.3.1 | непряма |
| PyPI | executing | 2.2.1 | непряма |
| PyPI | fast-array-utils | 1.3.1 | непряма |
| PyPI | fastjsonschema | 2.21.2 | непряма |
| PyPI | filelock | 3.20.3 | непряма |
| PyPI | fonttools | 4.61.1 | непряма |
| PyPI | formulaic | 1.2.1 | непряма |
| PyPI | formulaic-contrasts | 1.0.0 | непряма |
| PyPI | google-crc32c | 1.8.0 | непряма |
| PyPI | greenlet | 3.3.1 | непряма |
| PyPI | gseapy | 1.1.11 | непряма |
| PyPI | h5py | 3.15.1 | непряма |
| PyPI | highspy | 1.12.0 | непряма |
| PyPI | id | 1.5.0 | непряма |
| PyPI | identify | 2.6.16 | непряма |
| PyPI | idna | 3.11 | непряма |
| PyPI | imagesize | 1.4.1 | непряма |
| PyPI | importlib-metadata | 8.7.1 | непряма |
| PyPI | inflect | 7.5.0 | непряма |
| PyPI | iniconfig | 2.3.0 | непряма |
| PyPI | interface-meta | 1.3.0 | непряма |
| PyPI | ipykernel | 7.1.0 | непряма |
| PyPI | ipython | 8.38.0 | непряма |
| PyPI | ipython | 9.9.0 | непряма |
| PyPI | ipython-pygments-lexers | 1.1.1 | непряма |
| PyPI | jaraco-classes | 3.4.0 | непряма |
| PyPI | jaraco-context | 6.1.0 | непряма |
| PyPI | jaraco-functools | 4.4.0 | непряма |
| PyPI | jedi | 0.19.2 | непряма |
| PyPI | jeepney | 0.9.0 | непряма |
| PyPI | jinja2 | 3.1.6 | непряма |
| PyPI | joblib | 1.5.3 | непряма |
| PyPI | jsonschema | 4.26.0 | непряма |
| PyPI | jsonschema-specifications | 2025.9.1 | непряма |
| PyPI | jupyter-cache | 1.0.1 | непряма |
| PyPI | jupyter-client | 8.8.0 | непряма |
| PyPI | jupyter-core | 5.9.1 | непряма |
| PyPI | keyring | 25.7.0 | непряма |
| PyPI | kiwisolver | 1.4.9 | непряма |
| PyPI | kneed | 0.8.5 | непряма |
| PyPI | latexcodec | 3.0.1 | непряма |
| PyPI | legacy-api-wrap | 1.5 | непряма |
| PyPI | legendkit | 0.3.6 | непряма |
| PyPI | liana | 1.7.1 | непряма |
| PyPI | llvmlite | 0.46.0 | непряма |
| PyPI | markdown-it-py | 3.0.0 | непряма |
| PyPI | markdown-it-py | 4.0.0 | непряма |
| PyPI | markupsafe | 3.0.3 | непряма |
| PyPI | marsilea | 0.5.7 | непряма |
| PyPI | matplotlib | 3.10.8 | непряма |
| PyPI | matplotlib-inline | 0.2.1 | непряма |
| PyPI | mdit-py-plugins | 0.5.0 | непряма |
| PyPI | mdurl | 0.1.2 | непряма |
| PyPI | mizani | 0.14.3 | непряма |
| PyPI | mofapy2 | 0.7.3 | непряма |
| PyPI | mofax | 0.3.7 | непряма |
| PyPI | more-itertools | 10.8.0 | непряма |
| PyPI | muon | 0.1.7 | непряма |
| PyPI | myst-nb | 1.3.0 | непряма |
| PyPI | myst-parser | 4.0.1 | непряма |
| PyPI | myst-parser | 5.0.0 | непряма |
| PyPI | narwhals | 2.15.0 | непряма |
| PyPI | natsort | 8.4.0 | непряма |
| PyPI | nbclient | 0.10.4 | непряма |
| PyPI | nbformat | 5.10.4 | непряма |
| PyPI | nest-asyncio | 1.6.0 | непряма |
| PyPI | networkx | 3.4.2 | непряма |
| PyPI | networkx | 3.6.1 | непряма |
| PyPI | nh3 | 0.3.2 | непряма |
| PyPI | nodeenv | 1.10.0 | непряма |
| PyPI | numcodecs | 0.16.5 | непряма |
| PyPI | numpy | 2.2.6 | непряма |
| PyPI | numpy | 2.3.5 | непряма |
| PyPI | omnipath | 1.0.12 | непряма |
| PyPI | openpyxl | 3.1.5 | непряма |
| PyPI | packaging | 26.0 | непряма |
| PyPI | parso | 0.8.5 | непряма |
| PyPI | patsy | 1.0.2 | непряма |
| PyPI | pexpect | 4.9.0 | непряма |
| PyPI | pillow | 12.1.0 | непряма |
| PyPI | platformdirs | 4.5.1 | непряма |
| PyPI | pluggy | 1.6.0 | непряма |
| PyPI | pre-commit | 4.5.1 | непряма |
| PyPI | prompt-toolkit | 3.0.52 | непряма |
| PyPI | protobuf | 6.33.4 | непряма |
| PyPI | psutil | 7.2.1 | непряма |
| PyPI | ptyprocess | 0.7.0 | непряма |
| PyPI | pure-eval | 0.2.3 | непряма |
| PyPI | pyarrow | 23.0.0 | непряма |
| PyPI | pybtex | 0.25.1 | непряма |
| PyPI | pybtex-docutils | 1.0.3 | непряма |
| PyPI | pycparser | 3.0 | непряма |
| PyPI | pydata-sphinx-theme | 0.15.4 | непряма |
| PyPI | pydeseq2 | 0.5.2 | непряма |
| PyPI | pydeseq2 | 0.5.4 | непряма |
| PyPI | pygments | 2.19.2 | непряма |
| PyPI | pynndescent | 0.6.0 | непряма |
| PyPI | pyparsing | 3.3.2 | непряма |
| PyPI | pyscipopt | 5.7.1 | непряма |
| PyPI | pytest | 9.0.2 | непряма |
| PyPI | python-dateutil | 2.9.0.post0 | непряма |
| PyPI | pytz | 2025.2 | непряма |
| PyPI | pywin32-ctypes | 0.2.3 | непряма |
| PyPI | pyyaml | 6.0.3 | непряма |
| PyPI | pyzmq | 27.1.0 | непряма |
| PyPI | readme-renderer | 44.0 | непряма |
| PyPI | referencing | 0.37.0 | непряма |
| PyPI | requests | 2.32.5 | непряма |
| PyPI | requests-toolbelt | 1.0.0 | непряма |
| PyPI | rfc3986 | 2.0.0 | непряма |
| PyPI | rich | 14.2.0 | непряма |
| PyPI | rpds-py | 0.30.0 | непряма |
| PyPI | scikit-learn | 1.7.2 | непряма |
| PyPI | scikit-learn | 1.8.0 | непряма |
| PyPI | scipy | 1.15.3 | непряма |
| PyPI | scipy | 1.17.0 | непряма |
| PyPI | seaborn | 0.13.2 | непряма |
| PyPI | secretstorage | 3.5.0 | непряма |
| PyPI | session-info | 1.0.1 | непряма |
| PyPI | setuptools | 80.10.1 | непряма |
| PyPI | six | 1.17.0 | непряма |
| PyPI | snowballstemmer | 3.0.1 | непряма |
| PyPI | soupsieve | 2.8.3 | непряма |
| PyPI | sphinx | 8.1.3 | непряма |
| PyPI | sphinx-autodoc-typehints | 3.0.1 | непряма |
| PyPI | sphinx-book-theme | 1.1.4 | непряма |
| PyPI | sphinx-copybutton | 0.5.2 | непряма |
| PyPI | sphinx-tabs | 3.4.7 | непряма |
| PyPI | sphinxcontrib-applehelp | 2.0.0 | непряма |
| PyPI | sphinxcontrib-bibtex | 2.6.5 | непряма |
| PyPI | sphinxcontrib-devhelp | 2.0.0 | непряма |
| PyPI | sphinxcontrib-htmlhelp | 2.1.0 | непряма |
| PyPI | sphinxcontrib-jsmath | 1.0.1 | непряма |
| PyPI | sphinxcontrib-qthelp | 2.0.0 | непряма |
| PyPI | sphinxcontrib-serializinghtml | 2.0.0 | непряма |
| PyPI | sphinxext-opengraph | 0.13.0 | непряма |
| PyPI | sqlalchemy | 2.0.46 | непряма |
| PyPI | stack-data | 0.6.3 | непряма |
| PyPI | statannotations | 0.7.2 | непряма |
| PyPI | statsmodels | 0.14.6 | непряма |
| PyPI | stdlib-list | 0.12.0 | непряма |
| PyPI | tabulate | 0.9.0 | непряма |
| PyPI | tensorly | 0.9.0 | непряма |
| PyPI | threadpoolctl | 3.6.0 | непряма |
| PyPI | tomli | 2.4.0 | непряма |
| PyPI | tornado | 6.5.4 | непряма |
| PyPI | traitlets | 5.14.3 | непряма |
| PyPI | twine | 6.2.0 | непряма |
| PyPI | typeguard | 4.4.4 | непряма |
| PyPI | typing-extensions | 4.15.0 | непряма |
| PyPI | tzdata | 2025.3 | непряма |
| PyPI | umap-learn | 0.5.11 | непряма |
| PyPI | urllib3 | 2.6.3 | непряма |
| PyPI | virtualenv | 20.36.1 | непряма |
| PyPI | wcwidth | 0.3.2 | непряма |
| PyPI | wrapt | 2.0.1 | непряма |
| PyPI | xlrd | 2.0.2 | непряма |
| PyPI | zarr | 3.1.5 | непряма |
| PyPI | zipp | 3.23.0 | непряма |
Сповіщення про залежності 13
Цей репозиторій не публікує пакета, який розпізнає індекс, тож оцінено його власний граф залежностей — 204 пакетів, серед яких є й піниї розробки та тестування, що ніколи не постачаються: 13 мають відомі сповіщення, з них 0 прямі.
| Пакет | Версія | Зв'язок | Критичність | Сповіщень | Виправлено в |
|---|---|---|---|---|---|
| cryptography | 46.0.3 | непряма | критична | 7 | 48.0.1 |
| pillow | 12.1.0 | непряма | критична | 33 | 12.3.0 |
| click | 8.3.1 | непряма | висока | 1 | 8.3.3 |
| protobuf | 6.33.4 | непряма | висока | 2 | 6.33.5 |
| pyarrow | 23.0.0 | непряма | висока | 2 | 23.0.1 |
| soupsieve | 2.8.3 | непряма | висока | 4 | 2.8.4 |
| tornado | 6.5.4 | непряма | висока | 12 | 6.5.7 |
| urllib3 | 2.6.3 | непряма | висока | 4 | 2.7.0 |
| idna | 3.11 | непряма | помірна | 2 | 3.15 |
| pytest | 9.0.2 | непряма | помірна | 2 | 9.0.3 |
| requests | 2.32.5 | непряма | помірна | 2 | 2.33.0 |
| setuptools | 80.10.1 | непряма | помірна | 2 | 83.0.0 |
| pygments | 2.19.2 | непряма | низька | 2 | 2.20.0 |
Сповіщення означає, що версія, записана в графі залежностей, потрапляє в уражений діапазон. Досяжність не аналізується, а граф містить піниї розробки й тестування — знахідка може стосуватися інструментів, а не поставленого коду.
Звіт у форматі JSON машиночитний
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"created_at": "2022-09-22T13:20:35Z",
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"description": "LIANA+: an all-in-one framework for cell-cell communication",
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"license": {
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},
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},
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},
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"oid": "705bcf9dd9faa2257fee30e624a9690d0ddb932f",
"body": null,
"is_bot": false,
"headline": "add mofaflow to decision tree",
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{
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"author_name": "dbdimitrov",
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{
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"is_bot": false,
"headline": "Bump version: 1.8.0 → 1.8.1",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-07-15T19:11:24Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "0296f50836a2a91064bd54ce6025b2d5af464d6f",
"body": "Keeps docs/notebooks/models/ (trained MOFA-Flex models) out of the repo.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
"is_bot": false,
"headline": "chore: ignore *.hdf5 model files",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-07-15T19:11:00Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "b55b2365e748e5e254ede6b8db130d51f964077e",
"body": "inflow_mofaflex.ipynb: re-executed with dpi_save=50 and a load-if-exists guard\non the (GPU-trained) model so the tutorial is reproducible; dissection now focuses\non Factor 4 (GABAergic-neuron enkephalin/opioid, striatal) and Factor 1 (FGF/ECM\ntrophic niche), with the biology narrative rewritten to match the fitted model.\n\nLRIC_tutorial.ipynb: re-executed to reflect the updated LRIC/cross-PCF numerics\nfrom #245.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
"is_bot": false,
"headline": "docs: rerun MOFA-Flex and LRIC tutorials",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-07-15T19:11:00Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "21e8af68102455235e7e689cdd88b257b7231acf",
"body": "From AtheerAS:fix/LRIC. Introduces prep_check_adata-based unified preprocessing,\nchunked (pair_chunk) sparse scale-matrix multiplication to bound peak memory,\nsparse_distance_matrix/searchsorted binning, and a .raw-subsetting correctness\nfix (updates test reference values). Removes _filter_by_min_cells/_spatial_pairs.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
"is_bot": false,
"headline": "Merge #245: LRIC/CrossPCF memory & performance refactor",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-07-15T17:22:20Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "6a89d7bb7d79f20e9a356023500de1ff2b6ea335",
"body": "#244a (AnnData `dtype=` removal in >=0.11) is already resolved in the pipeline.\n#244b (pandas 3.0 Copy-on-Write turns the chained `inplace` fillna on\n`lrs_to_keep` into a no-op, and string-typed columns coerce the internal\nNone-labelled score column to 'nan') breaks rank_aggregate consensus/by_sample.\nFull pandas-3.0 support is broader than this issue, so pin <3 for now.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
"is_bot": false,
"headline": "fix: pin pandas<3 pending pandas-3.0 support (#244)",
"author_name": "dbdimitrov",
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},
{
"code": "account_age_years",
"params": {
"years": 11
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}
],
"max_points": 25
}
]
},
{
"key": "package_maintenance",
"band": "excellent",
"name": "Package maintenance",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"packages": [
"liana"
],
"ecosystems": "pypi",
"any_deprecated": false,
"min_days_since_publish": 5
},
"components": [
{
"key": "published_resolvable",
"name": "Published & resolvable",
"detail": "1 package(s) on pypi",
"points": 25,
"status": "met",
"details": [
{
"code": "packages_published",
"params": {
"count": 1,
"ecosystems": "pypi"
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"max_points": 25
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{
"key": "publish_recency",
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"detail": "latest publish 5 days ago",
"points": 35,
"status": "met",
"details": [
{
"code": "publish_recency",
"params": {
"days": 5
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}
],
"max_points": 35
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{
"key": "version_history",
"name": "Version history",
"detail": "29 published versions",
"points": 20,
"status": "met",
"details": [
{
"code": "published_versions",
"params": {
"count": 29
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}
],
"max_points": 20
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{
"key": "not_deprecated",
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"detail": "active, not deprecated or yanked",
"points": 20,
"status": "met",
"details": [
{
"code": "package_not_deprecated",
"params": {}
}
],
"max_points": 20
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]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "excellent",
"name": "Engineering Quality",
"value": 96,
"weight": 0.2,
"metrics": [
{
"key": "engineering_practices",
"band": "excellent",
"name": "Engineering practices",
"note": null,
"notes": [],
"value": 94,
"inputs": {
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"has_linter_config": true,
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"components": [
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"key": "ci_workflows",
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"detail": "3 workflow(s)",
"points": 24,
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"details": [
{
"code": "ci_workflows",
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{
"key": "tests_present",
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"points": 24,
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{
"key": "linter_config",
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"points": 16,
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{
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"points": 9.6,
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{
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{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
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},
{
"key": "documentation",
"band": "excellent",
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"note": null,
"notes": [],
"value": 100,
"inputs": {
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"has_wiki": true,
"homepage": "http://liana-py.readthedocs.io/",
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"components": [
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{
"key": "documentation_directory",
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{
"key": "documentation_homepage_site",
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{
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"details": [
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{
"key": "wiki",
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"detail": null,
"points": 10,
"status": "met",
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"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "moderate",
"name": "Security",
"value": 54,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
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"notes": [
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{
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"value": 43,
"inputs": {
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"points": 7.5,
"status": "met",
"details": [],
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},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
"points": 0,
"status": "excluded",
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{
"key": "ci_tests",
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"points": 2.5,
"status": "met",
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},
{
"key": "cii_best_practices",
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"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
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},
{
"key": "code_review",
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"points": 1.5,
"status": "partial",
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},
{
"key": "contributors",
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"points": 2.5,
"status": "met",
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},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
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"points": 10,
"status": "met",
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},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "no update tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "30 commit(s) and 7 issue activity found in the last 90 days -- score normalized to 10",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow detected",
"points": 5,
"status": "met",
"details": [],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "SAST tool is not run on all commits -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "detected GitHub workflow tokens with excessive permissions",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "41 existing vulnerabilities detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "dependency_advisories",
"band": "excellent",
"name": "Dependency advisories",
"note": "Excluded from scoring (no data or not applicable): Indirect dependencies free of known advisories, No advisories left outstanding. Remaining weights renormalized. Matched 204 resolved dependencies against OSV. This repository publishes no package the index resolves, so the repository dependency graph was assessed instead. That graph mixes development and test pins with shipped dependencies, so only the declared runtime dependencies are scored; transitive findings are reported as context and excluded from the score. Reachability is not analyzed.",
"notes": [
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"code": "excluded_no_data",
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"code": "weights_renormalized",
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},
{
"code": "advisories_scope_repository",
"params": {
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}
},
{
"code": "advisories_repo_graph_caveat",
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},
{
"code": "advisories_reachability",
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}
],
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"unassessed_packages": 0,
"affected_by_severity": "critical 2, high 6, moderate 4, low 1",
"direct_affected_packages": 0
},
"components": [
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"key": "direct_dependencies_free_of_known_advisories",
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"detail": "no direct dependency carries a known advisory",
"points": 35,
"status": "met",
"details": [
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"code": "no_direct_advisories",
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}
],
"max_points": 35
},
{
"key": "indirect_dependencies_free_of_known_advisories",
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"points": 0,
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},
{
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]
},
{
"key": "malicious_dependencies",
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"name": "Malicious dependencies",
"note": null,
"notes": [],
"value": 100,
"inputs": {
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"meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
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"red_flag": false,
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"direct_malicious_packages": 0,
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"installable_malicious_packages": 0
},
"components": [
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"name": "No dependency reported as a malicious package",
"detail": "no dependency is reported as a malicious package",
"points": 100,
"status": "met",
"details": [
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"code": "no_malicious_dependencies",
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}
],
"max_points": 100
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "excellent",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
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],
"value": 100,
"inputs": {
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"components": [
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"details": [
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"code": "jurisdiction_no_match",
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],
"max_points": 100
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]
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],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
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"value": 38,
"weight": 0,
"metrics": [
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"key": "ai_agent_context",
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"note": null,
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"components": [
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{
"key": "legible_commit_history",
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"code": "legible_history",
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},
"components": [
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"key": "type_checkable_code",
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{
"key": "manageable_file_sizes",
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"points": 55,
"status": "met",
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"code": "oversized_source_files",
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]
},
{
"key": "ai_interfaces",
"band": "at_risk",
"name": "Machine-readable interfaces",
"note": null,
"notes": [],
"value": 40,
"inputs": {
"example_dirs": [
"notebooks"
],
"has_mcp_signal": false,
"api_schema_files": []
},
"components": [
{
"key": "api_schema_openapi_graphql_proto",
"name": "API schema (OpenAPI/GraphQL/proto)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 40
},
{
"key": "mcp_server",
"name": "MCP server",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
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},
{
"key": "runnable_examples",
"name": "Runnable examples",
"detail": "notebooks",
"points": 40,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
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]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.13.0"
},
"warnings": [
"deps.dev does not index pypi:liana@1.8.1; advisories assessed against the repository dependency graph instead"
],
"report_type": "repository",
"generated_at": "2026-07-21T21:22:29.975173Z",
"schema_version": "0.23.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/s/saezlab/liana-py.svg",
"full_name": "saezlab/liana-py",
"license_state": "standard",
"license_spdx": "BSD-3-Clause"
}Оцінки — це сигнали, а не гарантії. Вони відображають публічно видимі практики на GitHub — це не аудит коду й не гарантія безпеки.
Відсутні дані виключаються, а ваги перенормовуються — нуль за відсутність ніколи не ставиться. Методологія версіонована й відкрита: метрики v1.13.0, схема v0.23.0 — повна методологія · вікі метрик.
Як окремий результат виглядає на тлі всього реєстру: сукупна статистика — PyPI.