公开记录
软件健康报告模式 0.23.0 · 指标 1.13.0 · 2026-07-21 21:22 UTC

saezlab / liana-py

LIANA+: an all-in-one framework for cell-cell communication

PythonBSD-3-Clause★ 305 星标⑂ 34 复刻始于 2022年9月在 GitHub 上查看 ↗

saezlab/liana-py 的健康指数为 100 分中的 74 分,处于「良好」区间。 其得分最高的类别是Engineering Quality(96/100),最低的是AI Readiness(38/100)。 最近一次更新在 5 天前。 近期的大部分工作由 1 位贡献者完成。

74
总分 / 100
良好

软件健康指数

指标归入加权类别,统一采用 1–100 量表。总体分先取类别加权平均;当公开证据触发高风险司法辖区政策时,评级会按政策调整,并设置 49(有风险)的上限。AI 就绪度不计入总体分。

74
优秀85-100堪称典范;基本满足所有检验标准
良好70-84健康;仅有轻微不足
中等50-69可接受,但存在明显不足;建议进行审查
存在风险30-49存在重大薄弱环节;采用时应保持审慎
危急1-29问题严重(项目被弃置、仅有单一维护者、缺乏基本工程规范)
活力社区与采用可持续性与治理工程质量安全AI 就绪度

评分画像

每条轴代表一个类别。形状比平均值更重要——健康的对象会填满整个图形,而“一峰一谷”式画像意味着某一维度的优势正掩盖另一维度的风险。

所有权

Saez Lab组织
487 关注者306 个公开仓库始于 2014年11月

该仓库由组织支持——共同承担、可问责的托管责任,可延续于任何单一维护者之后。

软件包生态系统

注册表软件包版本月下载量版本数最近发布
PyPIliana1.8.1-295 天前

按类别列示的指标

活力

项目是否仍有生命——是否仍在编写代码,是否仍在发布版本?

84良好 · 占总体的 22%
评分方式
36/36推送新近度 — 最近一次推送于 5 天前
15.2/36提交节奏 — 52 周中有 22 周有提交
18/18提交量 — 最近一年 181 次提交
10/10OpenSSF Scorecard:Maintained — 30 commit(s) and 7 issue activity found in the last 90 days -- score normalized to 10
所用输入
commits_last_year181
human_commit_share0.97
days_since_last_push5
active_weeks_last_year22

发布纪律

92优秀
评分方式
27/27有发布版本 — 已发布 24 个发布版本
36/36发布时效 — 最近一次发布版本于 5 天前
19.8/27发布节奏 — 约每 60.5 天发布一次
0/10OpenSSF Scorecard:Signed-Releases — 无数据
所用输入
releases_count24
latest_release_tagv1.8.1
releases_from_tags
days_since_latest_release5
mean_days_between_releases60.5
已排除计分(无数据或不适用):OpenSSF Scorecard:Signed-Releases。 其余权重已重新归一化。

社区与采用

项目是否拥有用户、下载量与关注度,并具备欢迎贡献者参与的配置?

61中等 · 占总体的 18%
评分方式
40.3/60星标 — 305 个星标
12.7/25复刻 — 34 个复刻
0/15关注者 — 1 位关注者
所用输入
forks34
stars305
watchers1
growth_stateorganic
growth_factor_pct100

社区健康

70良好
评分方式
22.5/22.5README
22.5/22.5许可证 — 可识别的许可证(BSD-3-Clause)
18/18CONTRIBUTING 指南
0/13.5行为准则
0/7.2议题模板
0/6.3PR 模板
所用输入
has_readme
has_license
has_contributing
has_issue_template
has_code_of_conduct
has_pull_request_template

可持续性与治理

项目能否在其成员之外延续——巴士系数、响应能力、由谁支持,以及软件包的维护状况?

68中等 · 占总体的 24%
评分方式
9/54巴士系数 — 1 位贡献者贡献了半数提交
8.8/22.5提交分布 — 头号贡献者编写了 61% 的提交
13.5/13.5贡献者广度 — 16 位贡献者
10/10OpenSSF Scorecard:Contributors — project has 15 contributing companies or organizations
所用输入
bus_factor1
contributors_sampled16
top_contributor_share0.608
评分方式
39.7/46.8议题解决 — 85% 的议题已关闭
27.5/38.3PR 接受 — 已裁定的 PR 中 46/64 已合并
3/15OpenSSF Scorecard:Code-Review — Found 2/7 approved changesets -- score normalized to 2
所用输入
merged_prs46
open_issues27
closed_issues153
issue_closed_ratio0.85
closed_unmerged_prs18
评分方式
30/30所有权背书 — 组织持有
0/20已验证域名
19.3/25所有者影响力 — saezlab 有 487 位关注者
25/25既往记录 — 306 个公开仓库,账户约 11 年
所用输入
followers487
owner_typeOrganization
is_verified
owner_loginsaezlab
public_repos306
account_age_days4,254
评分方式
25/25已发布且可解析 — pypi 上有 1 个软件包
35/35发布时效 — 最近一次发布于 5 天前
20/20版本历史 — 29 个已发布版本
20/20未被弃用 — 活跃,未被弃用或撤回
所用输入
packagesliana
ecosystemspypi
any_deprecated
min_days_since_publish5

工程质量

基础的工程与文档实践是否到位?

96优秀 · 占总体的 20%

工程实践

94优秀
评分方式
24/24CI 工作流 — 3 个工作流
24/24存在测试
16/16Linter 配置
9.6/9.6Pre-commit 钩子
0/6.4.editorconfig
20/20OpenSSF Scorecard:CI-Tests — 4 out of 4 merged PRs checked by a CI test -- score normalized to 10
所用输入
has_ci
has_tests
has_editorconfig
has_linter_config
has_precommit_config

文档

100优秀
评分方式
30/30README
25/25文档目录
15/15文档 / 主页站点 — http://liana-py.readthedocs.io/
10/10仓库描述
10/10主题标签 — 7 个主题标签
10/10Wiki
所用输入
topicscell-cell-communication, ligand-receptor, python, single-cell, single-cell-rna-seq, spatial, spatialomics
has_wiki
homepagehttp://liana-py.readthedocs.io/
has_readme
has_docs_dir
has_description

安全

可见的安全与供应链实践是否稳固,且不存在未解决的高风险司法辖区暴露?

54中等 · 占总体的 16%

安全态势

43存在风险
评分方式
7.5/7.5Binary-Artifacts — no binaries found in the repo
0/7.5Branch-Protection — 无数据
2.5/2.5CI-Tests — 4 out of 4 merged PRs checked by a CI test -- score normalized to 10
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
1.5/7.5Code-Review — Found 2/7 approved changesets -- score normalized to 2
2.5/2.5Contributors — project has 15 contributing companies or organizations
10/10Dangerous-Workflow — no dangerous workflow patterns detected
0/7.5Dependency-Update-Tool — no update tool detected
0/5Fuzzing — project is not fuzzed
2.5/2.5许可证 — license file detected
7.5/7.5Maintained — 30 commit(s) and 7 issue activity found in the last 90 days -- score normalized to 10
5/5Packaging — packaging workflow detected
0/5Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
0/5SAST — SAST tool is not run on all commits -- score normalized to 0
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — 无数据
0/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
0/7.5Vulnerabilities — 41 existing vulnerabilities detected
所用输入
sourceopenssf_scorecard
checks_evaluated16
scorecard_versionv5.5.0
checks_inconclusive2
scorecard_aggregate4.3
已排除计分(无数据或不适用):branch_protection, signed_releases。 其余权重已重新归一化。
评分方式
35/35直接依赖不含已知公告 — 没有直接依赖携带已知公告
0/25间接依赖不含已知公告 — 在此范围内,传递依赖集合无法与开发和测试依赖区分
0/40没有长期未处理的公告 — 没有公告带有发布日期
所用输入
sourceosv
advisories75
affected_packages13
assessed_packages204
unassessed_packages0
affected_by_severitycritical 2, high 6, moderate 4, low 1
direct_affected_packages0
已排除计分(无数据或不适用):间接依赖不含已知公告, 没有长期未处理的公告。 其余权重已重新归一化。 已将 204 个已解析依赖与 OSV 比对。 该仓库未发布任何索引可解析的软件包,因此改为评估仓库依赖图。该图将开发与测试版本固定同交付的依赖混在一起,因此仅对声明的运行时依赖计分;传递性发现仅作为背景信息列出,不计入评分。 未对可达性进行分析。

AI 就绪度

该仓库在多大程度上具备与 AI 编码代理协同开发与维护的条件?这是一枚独立的实验性徽章——权重为 0.0,因此单独呈现,不影响总体健康评分。

38存在风险 · 占总体的 0%
评分方式
0/45代理指令 — 没有 CLAUDE.md / AGENTS.md / 编辑器规则
0/15机器可读文档(llms.txt)
6.6/40可读的提交历史 — 97 次人类提交中有 12 次说明了意图(结构化标题或解释性正文)
所用输入
has_llms_txt
legible_history_share0.124
agent_instruction_files
agent_instruction_max_bytes
评分方式
0/18一条命令的引导启动
22/22自动化测试
11/11Lint / 格式化配置
0/11静态类型检查
10/10可复现环境 — lockfile
10/10已体现的代理实践 — 最近 100 次提交中有 10 次由代理编写或署名代理
0/8自动化维护 — 未观察到自动依赖更新
0/10OpenSSF Scorecard:Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
所用输入
has_nix
has_tests
lockfilesuv.lock
has_dockerfile
typed_language
bootstrap_files
has_devcontainer
has_linter_config
typecheck_configs
agent_commit_share0.1
toolchain_manifests
dependency_bot_commit_share0
评分方式
0/45可类型检查的代码 — Python,未配置类型检查
55/55可控的文件大小 — 采样的 106 个源文件中有 0 个超过 60KB
所用输入
primary_languagePython
largest_source_bytes30,684
source_files_sampled106
oversized_source_files0

机器可读接口

40存在风险
评分方式
0/40API 模式(OpenAPI/GraphQL/proto)
0/20MCP 服务器
40/40可运行示例 — notebooks
所用输入
example_dirsnotebooks
has_mcp_signal
api_schema_files

关键数据

305GitHub 星标
16贡献者
181最近 12 个月提交数
5距最近推送天数
24发布版本数
1巴士系数(bus factor)
27开放议题
PyPI软件包生态系统数

数据采集警告

  • deps.dev does not index pypi:liana@1.8.1; advisories assessed against the repository dependency graph instead

更多细节

Star 与 Fork 历史 305 ★ / 34 ⇿
305Star
34Fork
23发布

每颗 star 和每个 fork 的添加时间,来自 GitHub 并按天汇总。累计增长位于其构成来源——每日新增——的正上方,二者可相互对照:稳定的自然增长与短暂的突增形态截然不同。当这一差别可被衡量时,它会作为增长真实性予以报告。

012525037530534102022-102024-082026-07
主版本 0次版本 8修订 12

每个点涵盖 4 天。

OpenSSF Scorecard 4.3 / 10
4.3综合

来自开源项目 OpenSSF Scorecard 的独立、工具无关的安全评估。每项检查奖励的是安全实践本身,而非特定供应商的工具。Scorecard 无法判定的检查项标记为 不适用,并从安全评分中剔除(绝不按零分计)。Scorecard v5.5.0 · 2026-07-21 21:22 UTC

10Binary-Artifactsno binaries found in the repo
不适用Branch-Protectioninternal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md
10CI-Tests4 out of 4 merged PRs checked by a CI test -- score normalized to 10
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
2Code-ReviewFound 2/7 approved changesets -- score normalized to 2
10Contributorsproject has 15 contributing companies or organizations
10Dangerous-Workflowno dangerous workflow patterns detected
0Dependency-Update-Toolno update tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
10Maintained30 commit(s) and 7 issue activity found in the last 90 days -- score normalized to 10
10Packagingpackaging workflow detected
0Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 0
0SASTSAST tool is not run on all commits -- score normalized to 0
0Security-Policysecurity policy file not detected
不适用Signed-Releasesno releases found
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
0Vulnerabilities41 existing vulnerabilities detected
直接依赖 9
注册表软件包版本约束清单文件
PyPIanndata>=0.7.4pyproject.toml
PyPImudatapyproject.toml
PyPIscanpypyproject.toml
PyPInumbapyproject.toml
PyPItqdm>=4.0pyproject.toml
PyPIdocrep>=0.3.1pyproject.toml
PyPIplotnine>=0.10.1pyproject.toml
PyPIsession-info2pyproject.toml
PyPIpandas<3pyproject.toml
全部依赖 204

来自 GitHub 依赖图的完整解析依赖集合:11 个直接依赖与 193 个间接(传递)软件包。仓库提交锁文件时,传递闭包才是完整的。

注册表软件包版本关系
PyPIanndata0.11.4直接
PyPIanndata0.12.7直接
PyPIdocrep0.3.2直接
PyPImudata0.3.2直接
PyPInumba0.63.1直接
PyPIpandas2.3.3直接
PyPIplotnine0.15.2直接
PyPIscanpy1.11.5直接
PyPIscanpy1.12直接
PyPIsession-info20.3直接
PyPItqdm4.67.1直接
PyPIaccessible-pygments0.0.5间接
PyPIadjusttext1.3.0间接
PyPIalabaster1.0.0间接
PyPIappnope0.1.4间接
PyPIarray-api-compat1.13.0间接
PyPIasttokens3.0.1间接
PyPIattrs25.4.0间接
PyPIbabel2.17.0间接
PyPIbackports-tarfile1.2.0间接
PyPIbeautifulsoup44.14.3间接
PyPIbump2version1.0.1间接
PyPIbumpversion0.6.0间接
PyPIcell2cell0.8.4间接
PyPIcertifi2026.1.4间接
PyPIcffi2.0.0间接
PyPIcfgv3.5.0间接
PyPIcharset-normalizer3.4.4间接
PyPIclick8.3.1间接
PyPIcolorama0.4.6间接
PyPIcomm0.2.3间接
PyPIcontourpy1.3.2间接
PyPIcontourpy1.3.3间接
PyPIcorneto0.9.1a6间接
PyPIcoverage7.13.1间接
PyPIcryptography46.0.3间接
PyPIcvxpy-base1.7.5间接
PyPIcycler0.12.1间接
PyPIdebugpy1.8.19间接
PyPIdecorator5.2.1间接
PyPIdecoupler2.1.4间接
PyPIdistlib0.4.0间接
PyPIdocutils0.21.2间接
PyPIdonfig0.8.1.post1间接
PyPIet-xmlfile2.0.0间接
PyPIexceptiongroup1.3.1间接
PyPIexecuting2.2.1间接
PyPIfast-array-utils1.3.1间接
PyPIfastjsonschema2.21.2间接
PyPIfilelock3.20.3间接
PyPIfonttools4.61.1间接
PyPIformulaic1.2.1间接
PyPIformulaic-contrasts1.0.0间接
PyPIgoogle-crc32c1.8.0间接
PyPIgreenlet3.3.1间接
PyPIgseapy1.1.11间接
PyPIh5py3.15.1间接
PyPIhighspy1.12.0间接
PyPIid1.5.0间接
PyPIidentify2.6.16间接
PyPIidna3.11间接
PyPIimagesize1.4.1间接
PyPIimportlib-metadata8.7.1间接
PyPIinflect7.5.0间接
PyPIiniconfig2.3.0间接
PyPIinterface-meta1.3.0间接
PyPIipykernel7.1.0间接
PyPIipython8.38.0间接
PyPIipython9.9.0间接
PyPIipython-pygments-lexers1.1.1间接
PyPIjaraco-classes3.4.0间接
PyPIjaraco-context6.1.0间接
PyPIjaraco-functools4.4.0间接
PyPIjedi0.19.2间接
PyPIjeepney0.9.0间接
PyPIjinja23.1.6间接
PyPIjoblib1.5.3间接
PyPIjsonschema4.26.0间接
PyPIjsonschema-specifications2025.9.1间接
PyPIjupyter-cache1.0.1间接
PyPIjupyter-client8.8.0间接
PyPIjupyter-core5.9.1间接
PyPIkeyring25.7.0间接
PyPIkiwisolver1.4.9间接
PyPIkneed0.8.5间接
PyPIlatexcodec3.0.1间接
PyPIlegacy-api-wrap1.5间接
PyPIlegendkit0.3.6间接
PyPIliana1.7.1间接
PyPIllvmlite0.46.0间接
PyPImarkdown-it-py3.0.0间接
PyPImarkdown-it-py4.0.0间接
PyPImarkupsafe3.0.3间接
PyPImarsilea0.5.7间接
PyPImatplotlib3.10.8间接
PyPImatplotlib-inline0.2.1间接
PyPImdit-py-plugins0.5.0间接
PyPImdurl0.1.2间接
PyPImizani0.14.3间接
PyPImofapy20.7.3间接
PyPImofax0.3.7间接
PyPImore-itertools10.8.0间接
PyPImuon0.1.7间接
PyPImyst-nb1.3.0间接
PyPImyst-parser4.0.1间接
PyPImyst-parser5.0.0间接
PyPInarwhals2.15.0间接
PyPInatsort8.4.0间接
PyPInbclient0.10.4间接
PyPInbformat5.10.4间接
PyPInest-asyncio1.6.0间接
PyPInetworkx3.4.2间接
PyPInetworkx3.6.1间接
PyPInh30.3.2间接
PyPInodeenv1.10.0间接
PyPInumcodecs0.16.5间接
PyPInumpy2.2.6间接
PyPInumpy2.3.5间接
PyPIomnipath1.0.12间接
PyPIopenpyxl3.1.5间接
PyPIpackaging26.0间接
PyPIparso0.8.5间接
PyPIpatsy1.0.2间接
PyPIpexpect4.9.0间接
PyPIpillow12.1.0间接
PyPIplatformdirs4.5.1间接
PyPIpluggy1.6.0间接
PyPIpre-commit4.5.1间接
PyPIprompt-toolkit3.0.52间接
PyPIprotobuf6.33.4间接
PyPIpsutil7.2.1间接
PyPIptyprocess0.7.0间接
PyPIpure-eval0.2.3间接
PyPIpyarrow23.0.0间接
PyPIpybtex0.25.1间接
PyPIpybtex-docutils1.0.3间接
PyPIpycparser3.0间接
PyPIpydata-sphinx-theme0.15.4间接
PyPIpydeseq20.5.2间接
PyPIpydeseq20.5.4间接
PyPIpygments2.19.2间接
PyPIpynndescent0.6.0间接
PyPIpyparsing3.3.2间接
PyPIpyscipopt5.7.1间接
PyPIpytest9.0.2间接
PyPIpython-dateutil2.9.0.post0间接
PyPIpytz2025.2间接
PyPIpywin32-ctypes0.2.3间接
PyPIpyyaml6.0.3间接
PyPIpyzmq27.1.0间接
PyPIreadme-renderer44.0间接
PyPIreferencing0.37.0间接
PyPIrequests2.32.5间接
PyPIrequests-toolbelt1.0.0间接
PyPIrfc39862.0.0间接
PyPIrich14.2.0间接
PyPIrpds-py0.30.0间接
PyPIscikit-learn1.7.2间接
PyPIscikit-learn1.8.0间接
PyPIscipy1.15.3间接
PyPIscipy1.17.0间接
PyPIseaborn0.13.2间接
PyPIsecretstorage3.5.0间接
PyPIsession-info1.0.1间接
PyPIsetuptools80.10.1间接
PyPIsix1.17.0间接
PyPIsnowballstemmer3.0.1间接
PyPIsoupsieve2.8.3间接
PyPIsphinx8.1.3间接
PyPIsphinx-autodoc-typehints3.0.1间接
PyPIsphinx-book-theme1.1.4间接
PyPIsphinx-copybutton0.5.2间接
PyPIsphinx-tabs3.4.7间接
PyPIsphinxcontrib-applehelp2.0.0间接
PyPIsphinxcontrib-bibtex2.6.5间接
PyPIsphinxcontrib-devhelp2.0.0间接
PyPIsphinxcontrib-htmlhelp2.1.0间接
PyPIsphinxcontrib-jsmath1.0.1间接
PyPIsphinxcontrib-qthelp2.0.0间接
PyPIsphinxcontrib-serializinghtml2.0.0间接
PyPIsphinxext-opengraph0.13.0间接
PyPIsqlalchemy2.0.46间接
PyPIstack-data0.6.3间接
PyPIstatannotations0.7.2间接
PyPIstatsmodels0.14.6间接
PyPIstdlib-list0.12.0间接
PyPItabulate0.9.0间接
PyPItensorly0.9.0间接
PyPIthreadpoolctl3.6.0间接
PyPItomli2.4.0间接
PyPItornado6.5.4间接
PyPItraitlets5.14.3间接
PyPItwine6.2.0间接
PyPItypeguard4.4.4间接
PyPItyping-extensions4.15.0间接
PyPItzdata2025.3间接
PyPIumap-learn0.5.11间接
PyPIurllib32.6.3间接
PyPIvirtualenv20.36.1间接
PyPIwcwidth0.3.2间接
PyPIwrapt2.0.1间接
PyPIxlrd2.0.2间接
PyPIzarr3.1.5间接
PyPIzipp3.23.0间接
依赖安全公告 13

该仓库未发布可被索引解析的包,因此评估的是其自身的依赖图——共 204 个包,其中也包含从不交付的开发与测试版本固定:13 个存在已知公告,0 个为直接依赖。

软件包版本关系严重程度公告数修复版本
cryptography46.0.3间接严重748.0.1
pillow12.1.0间接严重3312.3.0
click8.3.1间接18.3.3
protobuf6.33.4间接26.33.5
pyarrow23.0.0间接223.0.1
soupsieve2.8.3间接42.8.4
tornado6.5.4间接126.5.7
urllib32.6.3间接42.7.0
idna3.11间接23.15
pytest9.0.2间接29.0.3
requests2.32.5间接22.33.0
setuptools80.10.1间接283.0.0
pygments2.19.2间接22.20.0

公告表示依赖图中记录的版本落入某条公告的受影响范围。可达性未经分析,且依赖图包含开发与测试的版本固定——某项发现可能只涉及工具链而非交付的软件。

原始 JSON 报告 机器可读
{
  "data": {
    "repo": {
      "topics": [
        "cell-cell-communication",
        "ligand-receptor",
        "python",
        "single-cell",
        "single-cell-rna-seq",
        "spatial",
        "spatialomics"
      ],
      "is_fork": false,
      "size_kb": 431552,
      "has_wiki": true,
      "homepage": "http://liana-py.readthedocs.io/",
      "languages": {
        "Python": 505951
      },
      "pushed_at": "2026-07-16T13:45:28Z",
      "created_at": "2022-09-22T13:20:35Z",
      "owner_type": "Organization",
      "updated_at": "2026-07-16T13:44:03Z",
      "description": "LIANA+: an all-in-one framework for cell-cell communication",
      "is_archived": false,
      "is_disabled": false,
      "license_spdx": "BSD-3-Clause",
      "default_branch": "main",
      "license_spdx_raw": "BSD-3-Clause",
      "primary_language": "Python",
      "significant_languages": [
        "Python"
      ]
    },
    "owner": {
      "blog": "saezlab.org",
      "name": "Saez Lab",
      "type": "Organization",
      "login": "saezlab",
      "company": null,
      "location": "Germany",
      "followers": 487,
      "avatar_url": "https://avatars.githubusercontent.com/u/9979042?v=4",
      "created_at": "2014-11-27T16:46:34Z",
      "is_verified": null,
      "public_repos": 306,
      "account_age_days": 4254
    },
    "license": {
      "state": "standard",
      "spdx_id": "BSD-3-Clause",
      "raw_spdx": "BSD-3-Clause",
      "file_present": true,
      "scorecard_found": true,
      "profile_has_license": true
    },
    "activity": {
      "releases": [
        {
          "tag": "v1.8.1",
          "kind": "patch",
          "published_at": "2026-07-16T13:45:28Z"
        },
        {
          "tag": "v1.8.0",
          "kind": "minor",
          "published_at": "2026-06-29T12:43:58Z"
        },
        {
          "tag": "1.7.3",
          "kind": "patch",
          "published_at": "2026-05-26T16:53:26Z"
        },
        {
          "tag": "1.7.1",
          "kind": "patch",
          "published_at": "2026-01-24T11:36:03Z"
        },
        {
          "tag": "metalinksdb",
          "kind": "other",
          "published_at": "2026-01-24T10:40:50Z"
        },
        {
          "tag": "v1.7.0",
          "kind": "minor",
          "published_at": "2026-01-11T09:39:14Z"
        },
        {
          "tag": "1.6.1",
          "kind": "patch",
          "published_at": "2025-09-28T14:20:34Z"
        },
        {
          "tag": "v1.6.0",
          "kind": "minor",
          "published_at": "2025-07-14T10:02:34Z"
        },
        {
          "tag": "1.5.1",
          "kind": "patch",
          "published_at": "2025-02-13T17:58:20Z"
        },
        {
          "tag": "v1.5.0",
          "kind": "minor",
          "published_at": "2025-01-17T17:50:28Z"
        },
        {
          "tag": "1.4.0",
          "kind": "minor",
          "published_at": "2024-09-02T10:20:57Z"
        },
        {
          "tag": "1.3.0",
          "kind": "minor",
          "published_at": "2024-07-18T11:49:07Z"
        },
        {
          "tag": "1.2.1",
          "kind": "patch",
          "published_at": "2024-06-12T07:42:52Z"
        },
        {
          "tag": "1.2.0",
          "kind": "minor",
          "published_at": "2024-05-24T18:30:58Z"
        },
        {
          "tag": "1.1.0",
          "kind": "minor",
          "published_at": "2024-04-12T09:01:13Z"
        },
        {
          "tag": "1.0.5",
          "kind": "patch",
          "published_at": "2024-03-14T06:34:11Z"
        },
        {
          "tag": "1.0.4",
          "kind": "patch",
          "published_at": "2024-01-17T16:09:53Z"
        },
        {
          "tag": "1.0.3",
          "kind": "patch",
          "published_at": "2023-11-10T18:52:01Z"
        },
        {
          "tag": "1.0.2",
          "kind": "patch",
          "published_at": "2023-10-26T06:45:07Z"
        },
        {
          "tag": "1.0.1",
          "kind": "patch",
          "published_at": "2023-10-01T21:49:48Z"
        },
        {
          "tag": "1.0.0a1",
          "kind": "other",
          "published_at": "2023-09-06T09:35:42Z"
        },
        {
          "tag": "1.0.0a0",
          "kind": "other",
          "published_at": "2023-07-27T10:28:59Z"
        },
        {
          "tag": "0.1.9",
          "kind": "patch",
          "published_at": "2023-07-10T18:26:53Z"
        },
        {
          "tag": "0.1.8",
          "kind": "patch",
          "published_at": "2023-06-06T12:20:40Z"
        }
      ],
      "recent_commits": [
        {
          "oid": "705bcf9dd9faa2257fee30e624a9690d0ddb932f",
          "body": null,
          "is_bot": false,
          "headline": "add mofaflow to decision tree",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-07-16T13:31:48Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5f3886509c69b6185cb24de927986a12051958d5",
          "body": null,
          "is_bot": false,
          "headline": "fix float64 leak",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-07-16T13:00:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8f52076efc1f92ba4bdf031b86bfc8f941ccd96d",
          "body": null,
          "is_bot": false,
          "headline": "copy correctly; fix links; deterministic mofaflex",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-07-16T12:37:54Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "65e279a94bb10f1a8cd470666ee52f9fc33c9b18",
          "body": "Release 1.8.1: LRIC/cross-PCF memory & perf refactor (#245), MistyData uns/obsm\npreservation (#242), expand_coordinates utility + MOFA-Flex tutorial (#238),\nand pandas<3 pin for rank_aggregate/by_sample compatibility (#244).\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Bump version: 1.8.0 → 1.8.1",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-07-15T19:11:24Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "0296f50836a2a91064bd54ce6025b2d5af464d6f",
          "body": "Keeps docs/notebooks/models/ (trained MOFA-Flex models) out of the repo.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "chore: ignore *.hdf5 model files",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-07-15T19:11:00Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "b55b2365e748e5e254ede6b8db130d51f964077e",
          "body": "inflow_mofaflex.ipynb: re-executed with dpi_save=50 and a load-if-exists guard\non the (GPU-trained) model so the tutorial is reproducible; dissection now focuses\non Factor 4 (GABAergic-neuron enkephalin/opioid, striatal) and Factor 1 (FGF/ECM\ntrophic niche), with the biology narrative rewritten to match the fitted model.\n\nLRIC_tutorial.ipynb: re-executed to reflect the updated LRIC/cross-PCF numerics\nfrom #245.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "docs: rerun MOFA-Flex and LRIC tutorials",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-07-15T19:11:00Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "21e8af68102455235e7e689cdd88b257b7231acf",
          "body": "From AtheerAS:fix/LRIC. Introduces prep_check_adata-based unified preprocessing,\nchunked (pair_chunk) sparse scale-matrix multiplication to bound peak memory,\nsparse_distance_matrix/searchsorted binning, and a .raw-subsetting correctness\nfix (updates test reference values). Removes _filter_by_min_cells/_spatial_pairs.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Merge #245: LRIC/CrossPCF memory & performance refactor",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-07-15T17:22:20Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "6a89d7bb7d79f20e9a356023500de1ff2b6ea335",
          "body": "#244a (AnnData `dtype=` removal in >=0.11) is already resolved in the pipeline.\n#244b (pandas 3.0 Copy-on-Write turns the chained `inplace` fillna on\n`lrs_to_keep` into a no-op, and string-typed columns coerce the internal\nNone-labelled score column to 'nan') breaks rank_aggregate consensus/by_sample.\nFull pandas-3.0 support is broader than this issue, so pin <3 for now.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "fix: pin pandas<3 pending pandas-3.0 support (#244)",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-07-15T17:16:45Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "f3a67d6725f5e8c7ed6337b1c366c50b007ab8c2",
          "body": null,
          "is_bot": false,
          "headline": "change fig",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-07-15T16:07:30Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "725be83b2c4a1bfbb1a82de99a678290cb8815dc",
          "body": null,
          "is_bot": false,
          "headline": "Fix LRIC performance and memory issues",
          "author_name": "AtheerAS",
          "author_login": "AtheerAS",
          "committed_at": "2026-07-14T21:29:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "348f943e474077522e66e015a63603cd033c95c6",
          "body": null,
          "is_bot": false,
          "headline": "extend",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-07-10T14:22:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1d50c7a8dfbc0a461c35fbf7b1803d082da56893",
          "body": null,
          "is_bot": false,
          "headline": "adjust tuto",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-07-08T14:07:22Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "92346aeaa4929bb03a3c2fdf1cc482437fb0d94e",
          "body": null,
          "is_bot": false,
          "headline": "adjust exand coords",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-07-08T12:20:49Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8dea8584b68670212e6a8b3c4ad3bc5cae1477ca",
          "body": "…oordinates on a non-overlapping grid",
          "is_bot": false,
          "headline": "Add _expand_coordinates utility for laying out multi-sample spatial c…",
          "author_name": "AtheerAS",
          "author_login": "AtheerAS",
          "committed_at": "2026-07-05T11:23:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0b9a9aa2c9cc53b9ef122efc4defa73667679a94",
          "body": null,
          "is_bot": false,
          "headline": "Update notebook",
          "author_name": "AtheerAS",
          "author_login": "AtheerAS",
          "committed_at": "2026-07-03T15:21:08Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a6ce2d12a244cf269a8fa43b0fb108992b077df9",
          "body": null,
          "is_bot": false,
          "headline": "inflow - MOFAflex notebook & util",
          "author_name": "AtheerAS",
          "author_login": "AtheerAS",
          "committed_at": "2026-07-02T21:59:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "18d574b9e3b6c1c436663ce8999b9931b442c294",
          "body": null,
          "is_bot": false,
          "headline": "title fix",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-06-29T12:28:25Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9788e7f30c957f83128d119c1d8e48ddb9ba5c37",
          "body": null,
          "is_bot": false,
          "headline": "improve diagram",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-06-29T12:20:05Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c64c4adaa4a196eb6f973ed33cc47cb2905d81f9",
          "body": null,
          "is_bot": false,
          "headline": "Bump version: 1.7.3 → 1.8.0",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-06-29T12:14:24Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6cc62f72d73421bdabdec9d0d92152b937007ae7",
          "body": "Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "docs: changelog for 1.8.0 (LRIC, cross-PCF, pyCrossTalkeR)",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-06-29T12:13:23Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "f193ba3ecad4cb435a957ef348820ea1f90fede7",
          "body": null,
          "is_bot": false,
          "headline": "update tree and docs",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-06-29T12:09:54Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6be05952f7a205993d6a4757e65b04ee7ea52f71",
          "body": null,
          "is_bot": false,
          "headline": "improve API + merge crosstalker",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-06-29T11:49:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "290a9148af032521e2aa51138a986ccb79af7477",
          "body": "(cherry picked from commit 9da871ea8729a2511af1bb99fd5e422b8e8a05dd)",
          "is_bot": false,
          "headline": "fix version and from_liana",
          "author_name": "jsnagai",
          "author_login": "jsnagai",
          "committed_at": "2026-06-29T11:36:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "40b8b4c64788c360782edf848752db0fdd24864f",
          "body": null,
          "is_bot": false,
          "headline": "fix on decimal instability in weighted spearman",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-06-29T11:16:29Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "170c2264423618124dc9c0dbc69613f2d978e0a8",
          "body": null,
          "is_bot": false,
          "headline": "add help plots",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-06-29T10:31:35Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5a1f0a1ed2ffc4ffc9a03ae5f34684a82d9b1ade",
          "body": null,
          "is_bot": false,
          "headline": "expand definitions + acknowledge prior work",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-06-29T09:37:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "14d61e6a7c4a56caa1f225e657d93a90c3a475dc",
          "body": null,
          "is_bot": false,
          "headline": "resolve linting etc",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-06-29T07:44:29Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "440206efd9a837f982b0fcb1170e785d9e8de98e",
          "body": null,
          "is_bot": false,
          "headline": "first pass",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-06-29T07:13:53Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b0e8cb6c1eea73c0842192ea8da24875dac7b4a1",
          "body": null,
          "is_bot": false,
          "headline": "remove np.log1p call from linear_transform",
          "author_name": "AtheerAS",
          "author_login": "AtheerAS",
          "committed_at": "2026-06-25T18:07:16Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "fb062e80b84101aa677e55565d8d0c7347735fcd",
          "body": null,
          "is_bot": false,
          "headline": "Add overview figure",
          "author_name": "AtheerAS",
          "author_login": "AtheerAS",
          "committed_at": "2026-06-25T17:45:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "908f1520a678a3673fdd30907388a4886cee8bfb",
          "body": null,
          "is_bot": false,
          "headline": "Address PR review comments",
          "author_name": "AtheerAS",
          "author_login": "AtheerAS",
          "committed_at": "2026-06-25T17:23:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "71999e6313516da370448128e636821e583c1d8d",
          "body": null,
          "is_bot": false,
          "headline": "wPCF notebook & functions",
          "author_name": "AtheerAS",
          "author_login": "AtheerAS",
          "committed_at": "2026-06-05T13:33:38Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "850d3b24558332d41cd3f8731d139223f609b63c",
          "body": "Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "bump version to 1.7.3",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-05-26T16:48:38Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "7d61c033744f7b7b3a08231347eb1d9582e487a3",
          "body": null,
          "is_bot": false,
          "headline": "update hcop call",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-05-26T16:23:50Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d776ba253a4ee382cbb2d9a0f4925bf12f522389",
          "body": null,
          "is_bot": false,
          "headline": "strip unneeded signatures",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-05-26T16:15:08Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1e43c069b427f80d331fc37d8bc0c6036689c1c0",
          "body": null,
          "is_bot": false,
          "headline": "make sure the notebook runs",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-05-14T08:59:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b0da6f5c9b72780150eedd6ef76f8c18ad310318",
          "body": "- Add mypy type-checking note in Code-style section\n- Document the new build.yaml CI workflow (uv build + twine check)\n- Fix bump2version → bumpversion (aligns with pyproject.toml dev dep)\n- Update README CI badge URL: main.yml → test.yml (workflow rename)\n\nCo-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "docs: update contributing guide for mypy, build CI, and bumpversion",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-05-14T08:51:20Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "e2b49dc924207d1ee2c435cfc778cc1952f8d7da",
          "body": "…build CI)\n\nResolves 6 merge conflicts with HEAD (v1.7.x spatial proximity features,\nGCS-based orthology, target_organism param). Fixes ruff/mypy pre-commit\nfailures introduced by the PR: Callable annotations, missing return\nstatements, var-annotated type hints, and structural type-ignore comments.\n\nCo-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Merge PR #219: doc update (NumPy docstrings, type annotations, mypy, …",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-05-14T08:50:24Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "c011dfeb909a1c0a2043a8648b0f09dc6ff96be1",
          "body": null,
          "is_bot": false,
          "headline": "metalinks sync",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-05-14T08:24:50Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e7617fe0a30e2eba1344bd0ea29a8db158fec039",
          "body": "- Replace defunct EBI FTP URL with HGNC Google Cloud Storage bucket\n- Add target_organism parameter (default \"mouse\") to get_hcop_orthologs,\n  supporting all 19 HCOP species\n- Update prior_knowledge.ipynb to use new target_organism API\n- Update CHANGELOG for 1.7.2\n\nCo-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "fix orthology: switch HCOP to GCS, add target_organism param",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-05-14T08:05:56Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "e0a50da4e034cd19590d8b36af18bd554e2423d7",
          "body": null,
          "is_bot": false,
          "headline": "merge solution from decoupler",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-05-14T07:56:22Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "30a9859eb9d1b57be02e6f43b6be355632aa1722",
          "body": null,
          "is_bot": false,
          "headline": "extend figs",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-05-14T07:31:15Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3ce3dcce473617be319797c83b8b6c153f3eb97d",
          "body": null,
          "is_bot": false,
          "headline": "docs versions",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-24T11:44:47Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "276fc05d065006680940f1611e33aa9f04a683c4",
          "body": null,
          "is_bot": false,
          "headline": "fix logo location",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-24T11:30:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "eb7cc85b4a3767b88d63b7ff72963e64e79b7728",
          "body": null,
          "is_bot": false,
          "headline": "adjust link",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-24T11:25:45Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "fb531d64c3edd97f78e8fde2ab38288381f77b5d",
          "body": "Metalinks access",
          "is_bot": false,
          "headline": "Merge pull request #228 from saezlab/metalinks_access",
          "author_name": "Daniel Dimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-24T11:23:23Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a41a3ba396acd5f5d98439abdbb95dc2d04ae6d5",
          "body": null,
          "is_bot": false,
          "headline": "clarify tree",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-24T11:21:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "601a57b911e30ef671ea64ca9264631b3605487f",
          "body": null,
          "is_bot": false,
          "headline": "test mermaid",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-24T11:16:15Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f31dcf40edf03db52e4bdb46ac0fda52a129c0a6",
          "body": null,
          "is_bot": false,
          "headline": "test to decimal",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-24T11:08:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7c02c318b772a542e9180eec5ce54272921caa17",
          "body": null,
          "is_bot": false,
          "headline": "adjust acc to scanpy version",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-24T10:56:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "70bf35c86028f9719f3fcd47e77d98153564a977",
          "body": null,
          "is_bot": false,
          "headline": "Bump version: 1.7.0 → 1.7.1",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-24T10:44:03Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6ad8488ee541ff19fe746f8539af2aef77f9cc6b",
          "body": null,
          "is_bot": false,
          "headline": "update to gh release",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-24T10:43:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "305ea037078103ae4b327a8bc6f9225e10b17bf8",
          "body": null,
          "is_bot": false,
          "headline": "simplify",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-07T20:24:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "85e84b3052442d6654545de103ac952ef2fafd8c",
          "body": null,
          "is_bot": false,
          "headline": "add more headers",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-07T20:06:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "25ff730f522801485dcbc70a337834c6ea58270f",
          "body": null,
          "is_bot": false,
          "headline": "improve header formating",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-07T20:00:43Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "180c6d2b0d35b88afb1bacfdd8d6308deadb4497",
          "body": "v1.7.0",
          "is_bot": false,
          "headline": "v1.7.0",
          "author_name": "Daniel Dimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-07T19:50:40Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "59a3546682f228112932796490ecc3dc7abd2c24",
          "body": null,
          "is_bot": false,
          "headline": "ensure metalinksdb gets properly downloaded",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-07T19:45:56Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "01381ba1006fdfc5676a14a15792d5d40af08de1",
          "body": "…tion\n\nCo-authored-by: dbdimitrov <50865230+dbdimitrov@users.noreply.github.com>",
          "is_bot": true,
          "headline": "Revert groupby parameter change - '@label' is correct internal conven…",
          "author_name": "copilot-swe-agent[bot]",
          "author_login": "Copilot",
          "committed_at": "2026-01-07T18:59:45Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5ab0b43b8946ebe0ea8edf03a6f39283f9db7671",
          "body": "Co-authored-by: dbdimitrov <50865230+dbdimitrov@users.noreply.github.com>",
          "is_bot": true,
          "headline": "Address code review comments: fix formatting, typos, and unused imports",
          "author_name": "copilot-swe-agent[bot]",
          "author_login": "Copilot",
          "committed_at": "2026-01-07T18:56:50Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f897876be47b7be8ec7253acdc52b7d5419c837d",
          "body": null,
          "is_bot": true,
          "headline": "Initial plan",
          "author_name": "copilot-swe-agent[bot]",
          "author_login": "Copilot",
          "committed_at": "2026-01-07T18:48:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7fe04a64e03dcf57f3e41736d91551ac953b9d77",
          "body": null,
          "is_bot": false,
          "headline": "update dependencies",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-07T18:37:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d98539f6e7fa64c0f210c5c8912f340aba39ab3d",
          "body": null,
          "is_bot": false,
          "headline": "resolve #220",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-07T18:31:49Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0b44e13bdc4866aa28641e3bfd543ec4a3c1b2f2",
          "body": null,
          "is_bot": false,
          "headline": "add installation",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-07T14:57:12Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e546f35fb7c554503ab816d49d1330031264ff03",
          "body": null,
          "is_bot": false,
          "headline": "add some plots",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-07T14:26:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cdbcbbc658665ae361b41bfc34a39e96116e750d",
          "body": null,
          "is_bot": false,
          "headline": "update tutorial",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-07T10:56:47Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1066c1c5ca9e68d3f265073c9db64e915c03a73b",
          "body": null,
          "is_bot": false,
          "headline": "remove wrong imports",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-07T08:38:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a18b1f64f375c6c0e045f9a4d82e577c65006b40",
          "body": null,
          "is_bot": false,
          "headline": "add 3.13 to toml #216",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-07T08:24:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "50bea1c5b97dc5bfd468d08bd132da828143deed",
          "body": null,
          "is_bot": false,
          "headline": "Bump version: 1.6.1 → 1.7.0",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-07T08:20:13Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "dab259fc5417a778e771ce0e4374dd86f36b24c0",
          "body": null,
          "is_bot": false,
          "headline": "fix import issue",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2026-01-07T08:12:42Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "52216835c5b380c57ddadec9bba9ae4329116078",
          "body": null,
          "is_bot": false,
          "headline": "update tests",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-12-19T12:28:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "fe80ec95e50325af659f2df1727e9a98d46ecf2d",
          "body": null,
          "is_bot": false,
          "headline": "Update inflow score",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-12-18T13:42:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "070683da9f76d3198b297ffa198b5f1db2969709",
          "body": null,
          "is_bot": false,
          "headline": "add adata to mudata function",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-12-17T21:02:50Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "45a8fb7ab51d1776c8b4cf0b4dbc8a1b2624108a",
          "body": null,
          "is_bot": false,
          "headline": "Update inflow notebook",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-12-17T20:31:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1773dfe2d0772005f1f562f6b65c5dd700092b6d",
          "body": null,
          "is_bot": false,
          "headline": "Line wrapping and examples in `obsm_to_adata.py`",
          "author_name": "Nicolas Palacio",
          "author_login": "npalacioescat",
          "committed_at": "2025-12-15T12:39:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e774b5262dd5b5087161484d5845ffbe389cee07",
          "body": null,
          "is_bot": false,
          "headline": "Line wrap and examples in `quary_bandwidth.py`",
          "author_name": "Nicolas Palacio",
          "author_login": "npalacioescat",
          "committed_at": "2025-12-09T13:44:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "33b79828880959bcc1c88bc3da35822944ba870c",
          "body": null,
          "is_bot": false,
          "headline": "Line wrapping and examples in `spatial_neighbors.py`",
          "author_name": "Nicolas Palacio",
          "author_login": "npalacioescat",
          "committed_at": "2025-12-09T13:08:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "dfcc59b2bfab1e5c4cdd26a7d2c1d12e4ad2b575",
          "body": null,
          "is_bot": false,
          "headline": "Update inflow score notebook",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-12-05T15:52:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "dce5cb5f357ca0935acee8b4035c4d0219578d1a",
          "body": null,
          "is_bot": false,
          "headline": "update compute specificity",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-12-05T13:30:53Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "998a5e8073036f29ffa76487dc164df73aabd35f",
          "body": null,
          "is_bot": false,
          "headline": "add unittest for global spec",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-12-05T12:51:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "21d889ba207ace134c26d6f6b207e1859718f494",
          "body": null,
          "is_bot": false,
          "headline": "changes to global spec",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-12-04T22:27:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "bf4e27a696d8103d77f3e21e5e6166f2579e8e81",
          "body": null,
          "is_bot": false,
          "headline": "del heatmap fun",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-12-04T16:28:54Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "21257b8ac05ee25cdd7ed41f1005f7c550991ca1",
          "body": null,
          "is_bot": false,
          "headline": "Update global specificity function - omit loops",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-12-03T15:21:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1aa0d4092f4e254344a5d22ce0d1f3dfc1a01df7",
          "body": null,
          "is_bot": false,
          "headline": "drop gini metrics",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-12-03T12:54:51Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "da11dd99847dffab154613265ccab92533354108",
          "body": null,
          "is_bot": false,
          "headline": "Update inflow.var operations: gini",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-12-03T12:19:14Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2ba87d9ea40eb07188f674564b5b6e95c4413325",
          "body": null,
          "is_bot": false,
          "headline": "add comment",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2025-12-03T08:18:16Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "47a4ed30c12ee6dac330441f74d748a780315cd8",
          "body": null,
          "is_bot": false,
          "headline": "mask acc to filter",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2025-12-03T07:56:13Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f31e55b4836b4e96aee137b39e9332e6fa177207",
          "body": null,
          "is_bot": false,
          "headline": "merge spatial weights",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2025-12-03T06:51:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ad98024cfe3fdc447407a7495ff54f1e99078b0f",
          "body": null,
          "is_bot": false,
          "headline": "merge",
          "author_name": "dbdimitrov",
          "author_login": "dbdimitrov",
          "committed_at": "2025-12-03T06:45:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b2882f8f7246d4bfd065d95cda1df040f51d9b64",
          "body": null,
          "is_bot": false,
          "headline": "Update inflow-related functions",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-12-02T20:27:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9740b189a5d4644d4afedb1a4ea64b15dadf534a",
          "body": null,
          "is_bot": false,
          "headline": "Inflow updates",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-12-02T18:26:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a4219bc6e13ed3e856ee02c15f0470ae8c424838",
          "body": null,
          "is_bot": false,
          "headline": "Examples and line wrapping in `utils/transform.py`",
          "author_name": "Nicolas Palacio",
          "author_login": "npalacioescat",
          "committed_at": "2025-12-02T12:10:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "69858ddf9ba9947b25b862320ec659b1dc35bbe4",
          "body": null,
          "is_bot": false,
          "headline": "Line wrapping in `__init__.py`",
          "author_name": "Nicolas Palacio",
          "author_login": "npalacioescat",
          "committed_at": "2025-12-02T11:59:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f53ebfae4ff42a3840372534baa9c9ae8c7e25ea",
          "body": null,
          "is_bot": false,
          "headline": "Line wrapping for `_logging.py`",
          "author_name": "Nicolas Palacio",
          "author_login": "npalacioescat",
          "committed_at": "2025-12-02T11:55:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d997f263ad5e9a9107af17e31878a9f3244f26bf",
          "body": null,
          "is_bot": false,
          "headline": "unittest for global_specificity",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-12-02T11:25:45Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6d6401979c777b7889c157df862019e6a899bb53",
          "body": null,
          "is_bot": false,
          "headline": "Add inflow_spatial unittest",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-12-02T11:15:25Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7c04f895ca4c5e8e7a179e02e45ca36e6889bf2b",
          "body": null,
          "is_bot": false,
          "headline": "Update spatial_inflow plot function",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-12-01T23:29:49Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2ddcee85bb57663da53a7ffc71c1cfb3d767d2ca",
          "body": "…tmap plot function",
          "is_bot": false,
          "headline": "Add unittest for heatmap, update global specificity function, and hea…",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-12-01T15:46:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "352dbbfcc7bf331071bbfce3fbb722928d177e5c",
          "body": null,
          "is_bot": false,
          "headline": "Update functions",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-11-28T19:15:14Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b3b7abff667cb800609e202c047413f3352fad89",
          "body": null,
          "is_bot": false,
          "headline": "Update inflow-related plots functions",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-11-28T18:47:51Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1347885c596bef8bb93826fc6cb36e9965ba582c",
          "body": null,
          "is_bot": false,
          "headline": "Update inflow-related functions",
          "author_name": "Atheer Alsayah",
          "author_login": null,
          "committed_at": "2025-11-27T20:42:25Z",
          "body_truncated": false,
          "is_coding_agent": false
        }
      ],
      "releases_count": 24,
      "commits_last_year": 181,
      "latest_release_at": "2026-07-16T13:45:28Z",
      "latest_release_tag": "v1.8.1",
      "releases_from_tags": false,
      "days_since_last_push": 5,
      "active_weeks_last_year": 22,
      "days_since_latest_release": 5,
      "mean_days_between_releases": 60.5
    },
    "community": {
      "has_readme": true,
      "has_license": true,
      "has_description": true,
      "has_contributing": true,
      "health_percentage": 62,
      "has_issue_template": false,
      "has_code_of_conduct": false,
      "has_pull_request_template": false
    },
    "ecosystem": {
      "packages": [
        {
          "name": "liana",
          "exists": true,
          "license": null,
          "keywords": [
            "Programming Language :: Python :: 3 :: Only",
            "Programming Language :: Python :: 3.10",
            "Programming Language :: Python :: 3.11",
            "Programming Language :: Python :: 3.12",
            "Programming Language :: Python :: 3.13"
          ],
          "ecosystem": "pypi",
          "matches_repo": true,
          "registry_url": "https://pypi.org/project/liana/",
          "is_deprecated": false,
          "latest_version": "1.8.1",
          "repository_url": "https://github.com/saezlab/liana-py",
          "versions_count": 29,
          "total_downloads": null,
          "dependents_count": null,
          "deprecation_note": null,
          "maintainers_count": null,
          "monthly_downloads": null,
          "first_published_at": "2022-11-15T15:47:33.742319Z",
          "latest_published_at": "2026-07-16T13:46:03.585343Z",
          "latest_version_yanked": null,
          "days_since_latest_publish": 5
        }
      ]
    },
    "popularity": {
      "forks": 34,
      "stars": 305,
      "watchers": 1,
      "fork_history": {
        "days": [
          {
            "date": "2023-01-31",
            "count": 1
          },
          {
            "date": "2023-03-22",
            "count": 1
          },
          {
            "date": "2023-04-20",
            "count": 1
          },
          {
            "date": "2023-04-26",
            "count": 1
          },
          {
            "date": "2023-05-08",
            "count": 1
          },
          {
            "date": "2023-07-05",
            "count": 1
          },
          {
            "date": "2023-09-23",
            "count": 1
          },
          {
            "date": "2023-10-23",
            "count": 1
          },
          {
            "date": "2023-10-25",
            "count": 1
          },
          {
            "date": "2024-02-11",
            "count": 1
          },
          {
            "date": "2024-04-29",
            "count": 1
          },
          {
            "date": "2024-05-15",
            "count": 1
          },
          {
            "date": "2024-06-04",
            "count": 2
          },
          {
            "date": "2024-08-03",
            "count": 1
          },
          {
            "date": "2024-09-03",
            "count": 2
          },
          {
            "date": "2024-09-04",
            "count": 1
          },
          {
            "date": "2024-09-10",
            "count": 1
          },
          {
            "date": "2024-09-21",
            "count": 1
          },
          {
            "date": "2024-12-16",
            "count": 1
          },
          {
            "date": "2025-01-21",
            "count": 1
          },
          {
            "date": "2025-03-15",
            "count": 1
          },
          {
            "date": "2025-04-01",
            "count": 1
          },
          {
            "date": "2025-05-25",
            "count": 1
          },
          {
            "date": "2025-06-23",
            "count": 1
          },
          {
            "date": "2025-11-18",
            "count": 1
          },
          {
            "date": "2025-12-03",
            "count": 1
          },
          {
            "date": "2026-02-05",
            "count": 1
          },
          {
            "date": "2026-03-31",
            "count": 1
          },
          {
            "date": "2026-04-15",
            "count": 1
          },
          {
            "date": "2026-04-16",
            "count": 1
          },
          {
            "date": "2026-05-16",
            "count": 1
          },
          {
            "date": "2026-07-10",
            "count": 1
          }
        ],
        "complete": true,
        "collected": 34,
        "total_forks": 34
      },
      "star_history": {
        "days": [
          {
            "date": "2022-10-21",
            "count": 2
          },
          {
            "date": "2022-10-26",
            "count": 3
          },
          {
            "date": "2022-11-10",
            "count": 1
          },
          {
            "date": "2022-11-15",
            "count": 2
          },
          {
            "date": "2022-12-07",
            "count": 1
          },
          {
            "date": "2022-12-10",
            "count": 1
          },
          {
            "date": "2023-01-25",
            "count": 1
          },
          {
            "date": "2023-02-05",
            "count": 1
          },
          {
            "date": "2023-02-17",
            "count": 1
          },
          {
            "date": "2023-02-21",
            "count": 1
          },
          {
            "date": "2023-02-22",
            "count": 1
          },
          {
            "date": "2023-02-27",
            "count": 1
          },
          {
            "date": "2023-03-08",
            "count": 1
          },
          {
            "date": "2023-04-06",
            "count": 1
          },
          {
            "date": "2023-04-14",
            "count": 1
          },
          {
            "date": "2023-04-18",
            "count": 1
          },
          {
            "date": "2023-04-27",
            "count": 1
          },
          {
            "date": "2023-05-02",
            "count": 3
          },
          {
            "date": "2023-05-03",
            "count": 1
          },
          {
            "date": "2023-05-08",
            "count": 2
          },
          {
            "date": "2023-05-19",
            "count": 1
          },
          {
            "date": "2023-05-24",
            "count": 2
          },
          {
            "date": "2023-06-02",
            "count": 1
          },
          {
            "date": "2023-06-05",
            "count": 1
          },
          {
            "date": "2023-06-08",
            "count": 1
          },
          {
            "date": "2023-06-09",
            "count": 1
          },
          {
            "date": "2023-06-14",
            "count": 1
          },
          {
            "date": "2023-06-19",
            "count": 1
          },
          {
            "date": "2023-06-23",
            "count": 1
          },
          {
            "date": "2023-07-01",
            "count": 1
          },
          {
            "date": "2023-07-12",
            "count": 1
          },
          {
            "date": "2023-07-27",
            "count": 2
          },
          {
            "date": "2023-07-29",
            "count": 1
          },
          {
            "date": "2023-08-11",
            "count": 1
          },
          {
            "date": "2023-08-22",
            "count": 2
          },
          {
            "date": "2023-08-23",
            "count": 7
          },
          {
            "date": "2023-08-24",
            "count": 1
          },
          {
            "date": "2023-08-25",
            "count": 2
          },
          {
            "date": "2023-08-26",
            "count": 1
          },
          {
            "date": "2023-08-29",
            "count": 1
          },
          {
            "date": "2023-09-01",
            "count": 1
          },
          {
            "date": "2023-09-05",
            "count": 1
          },
          {
            "date": "2023-09-06",
            "count": 1
          },
          {
            "date": "2023-09-08",
            "count": 1
          },
          {
            "date": "2023-09-10",
            "count": 1
          },
          {
            "date": "2023-09-11",
            "count": 1
          },
          {
            "date": "2023-09-12",
            "count": 1
          },
          {
            "date": "2023-09-15",
            "count": 1
          },
          {
            "date": "2023-09-20",
            "count": 2
          },
          {
            "date": "2023-09-26",
            "count": 1
          },
          {
            "date": "2023-09-28",
            "count": 2
          },
          {
            "date": "2023-10-01",
            "count": 1
          },
          {
            "date": "2023-10-23",
            "count": 1
          },
          {
            "date": "2023-10-24",
            "count": 1
          },
          {
            "date": "2023-10-25",
            "count": 1
          },
          {
            "date": "2023-10-26",
            "count": 1
          },
          {
            "date": "2023-10-31",
            "count": 1
          },
          {
            "date": "2023-11-01",
            "count": 1
          },
          {
            "date": "2023-11-03",
            "count": 1
          },
          {
            "date": "2023-11-05",
            "count": 1
          },
          {
            "date": "2023-11-08",
            "count": 1
          },
          {
            "date": "2023-11-09",
            "count": 1
          },
          {
            "date": "2023-11-19",
            "count": 1
          },
          {
            "date": "2023-11-23",
            "count": 1
          },
          {
            "date": "2023-12-01",
            "count": 1
          },
          {
            "date": "2023-12-04",
            "count": 1
          },
          {
            "date": "2023-12-11",
            "count": 1
          },
          {
            "date": "2023-12-12",
            "count": 1
          },
          {
            "date": "2023-12-18",
            "count": 2
          },
          {
            "date": "2023-12-21",
            "count": 1
          },
          {
            "date": "2023-12-29",
            "count": 1
          },
          {
            "date": "2024-01-04",
            "count": 1
          },
          {
            "date": "2024-01-05",
            "count": 1
          },
          {
            "date": "2024-01-21",
            "count": 1
          },
          {
            "date": "2024-02-02",
            "count": 1
          },
          {
            "date": "2024-02-05",
            "count": 1
          },
          {
            "date": "2024-02-06",
            "count": 2
          },
          {
            "date": "2024-02-08",
            "count": 2
          },
          {
            "date": "2024-02-14",
            "count": 1
          },
          {
            "date": "2024-02-23",
            "count": 1
          },
          {
            "date": "2024-03-05",
            "count": 1
          },
          {
            "date": "2024-03-07",
            "count": 2
          },
          {
            "date": "2024-03-20",
            "count": 1
          },
          {
            "date": "2024-03-31",
            "count": 1
          },
          {
            "date": "2024-04-08",
            "count": 1
          },
          {
            "date": "2024-04-12",
            "count": 1
          },
          {
            "date": "2024-04-15",
            "count": 1
          },
          {
            "date": "2024-04-16",
            "count": 1
          },
          {
            "date": "2024-04-26",
            "count": 1
          },
          {
            "date": "2024-05-12",
            "count": 1
          },
          {
            "date": "2024-05-15",
            "count": 1
          },
          {
            "date": "2024-05-21",
            "count": 1
          },
          {
            "date": "2024-05-27",
            "count": 1
          },
          {
            "date": "2024-05-28",
            "count": 1
          },
          {
            "date": "2024-06-06",
            "count": 1
          },
          {
            "date": "2024-06-08",
            "count": 1
          },
          {
            "date": "2024-06-13",
            "count": 1
          },
          {
            "date": "2024-06-16",
            "count": 1
          },
          {
            "date": "2024-06-17",
            "count": 1
          },
          {
            "date": "2024-06-19",
            "count": 1
          },
          {
            "date": "2024-06-20",
            "count": 1
          },
          {
            "date": "2024-06-26",
            "count": 1
          },
          {
            "date": "2024-06-28",
            "count": 1
          },
          {
            "date": "2024-06-30",
            "count": 2
          },
          {
            "date": "2024-07-02",
            "count": 1
          },
          {
            "date": "2024-07-03",
            "count": 2
          },
          {
            "date": "2024-07-11",
            "count": 1
          },
          {
            "date": "2024-07-16",
            "count": 1
          },
          {
            "date": "2024-07-19",
            "count": 1
          },
          {
            "date": "2024-07-25",
            "count": 1
          },
          {
            "date": "2024-07-28",
            "count": 1
          },
          {
            "date": "2024-08-03",
            "count": 1
          },
          {
            "date": "2024-08-08",
            "count": 1
          },
          {
            "date": "2024-08-11",
            "count": 1
          },
          {
            "date": "2024-08-12",
            "count": 1
          },
          {
            "date": "2024-08-15",
            "count": 1
          },
          {
            "date": "2024-09-02",
            "count": 1
          },
          {
            "date": "2024-09-03",
            "count": 3
          },
          {
            "date": "2024-09-04",
            "count": 2
          },
          {
            "date": "2024-09-06",
            "count": 1
          },
          {
            "date": "2024-09-10",
            "count": 1
          },
          {
            "date": "2024-09-17",
            "count": 1
          },
          {
            "date": "2024-09-18",
            "count": 2
          },
          {
            "date": "2024-09-19",
            "count": 1
          },
          {
            "date": "2024-10-07",
            "count": 1
          },
          {
            "date": "2024-10-11",
            "count": 2
          },
          {
            "date": "2024-10-21",
            "count": 1
          },
          {
            "date": "2024-10-23",
            "count": 1
          },
          {
            "date": "2024-10-24",
            "count": 1
          },
          {
            "date": "2024-11-03",
            "count": 1
          },
          {
            "date": "2024-11-04",
            "count": 1
          },
          {
            "date": "2024-11-13",
            "count": 1
          },
          {
            "date": "2024-11-14",
            "count": 1
          },
          {
            "date": "2024-11-19",
            "count": 1
          },
          {
            "date": "2024-11-26",
            "count": 2
          },
          {
            "date": "2024-12-01",
            "count": 1
          },
          {
            "date": "2024-12-05",
            "count": 1
          },
          {
            "date": "2024-12-13",
            "count": 1
          },
          {
            "date": "2024-12-20",
            "count": 1
          },
          {
            "date": "2025-01-04",
            "count": 1
          },
          {
            "date": "2025-01-07",
            "count": 1
          },
          {
            "date": "2025-01-09",
            "count": 1
          },
          {
            "date": "2025-01-28",
            "count": 1
          },
          {
            "date": "2025-02-03",
            "count": 1
          },
          {
            "date": "2025-02-04",
            "count": 1
          },
          {
            "date": "2025-02-07",
            "count": 1
          },
          {
            "date": "2025-02-10",
            "count": 1
          },
          {
            "date": "2025-02-12",
            "count": 1
          },
          {
            "date": "2025-02-14",
            "count": 1
          },
          {
            "date": "2025-02-15",
            "count": 1
          },
          {
            "date": "2025-02-20",
            "count": 2
          },
          {
            "date": "2025-02-21",
            "count": 1
          },
          {
            "date": "2025-02-27",
            "count": 1
          },
          {
            "date": "2025-02-28",
            "count": 1
          },
          {
            "date": "2025-03-06",
            "count": 1
          },
          {
            "date": "2025-03-11",
            "count": 1
          },
          {
            "date": "2025-03-12",
            "count": 1
          },
          {
            "date": "2025-03-13",
            "count": 1
          },
          {
            "date": "2025-03-16",
            "count": 1
          },
          {
            "date": "2025-03-18",
            "count": 2
          },
          {
            "date": "2025-03-24",
            "count": 1
          },
          {
            "date": "2025-03-25",
            "count": 1
          },
          {
            "date": "2025-03-30",
            "count": 1
          },
          {
            "date": "2025-04-02",
            "count": 1
          },
          {
            "date": "2025-04-09",
            "count": 1
          },
          {
            "date": "2025-04-10",
            "count": 1
          },
          {
            "date": "2025-04-12",
            "count": 1
          },
          {
            "date": "2025-04-19",
            "count": 1
          },
          {
            "date": "2025-05-04",
            "count": 1
          },
          {
            "date": "2025-05-20",
            "count": 1
          },
          {
            "date": "2025-05-25",
            "count": 1
          },
          {
            "date": "2025-05-29",
            "count": 1
          },
          {
            "date": "2025-05-31",
            "count": 1
          },
          {
            "date": "2025-06-02",
            "count": 1
          },
          {
            "date": "2025-06-03",
            "count": 1
          },
          {
            "date": "2025-06-04",
            "count": 1
          },
          {
            "date": "2025-06-05",
            "count": 1
          },
          {
            "date": "2025-06-10",
            "count": 2
          },
          {
            "date": "2025-06-12",
            "count": 1
          },
          {
            "date": "2025-06-20",
            "count": 1
          },
          {
            "date": "2025-06-21",
            "count": 1
          },
          {
            "date": "2025-06-23",
            "count": 1
          },
          {
            "date": "2025-07-10",
            "count": 1
          },
          {
            "date": "2025-07-15",
            "count": 2
          },
          {
            "date": "2025-07-17",
            "count": 1
          },
          {
            "date": "2025-08-05",
            "count": 1
          },
          {
            "date": "2025-08-14",
            "count": 1
          },
          {
            "date": "2025-08-15",
            "count": 1
          },
          {
            "date": "2025-08-18",
            "count": 1
          },
          {
            "date": "2025-09-04",
            "count": 1
          },
          {
            "date": "2025-09-12",
            "count": 3
          },
          {
            "date": "2025-09-18",
            "count": 1
          },
          {
            "date": "2025-09-21",
            "count": 1
          },
          {
            "date": "2025-09-23",
            "count": 1
          },
          {
            "date": "2025-09-24",
            "count": 1
          },
          {
            "date": "2025-09-25",
            "count": 1
          },
          {
            "date": "2025-09-30",
            "count": 2
          },
          {
            "date": "2025-10-09",
            "count": 1
          },
          {
            "date": "2025-10-15",
            "count": 1
          },
          {
            "date": "2025-10-16",
            "count": 1
          },
          {
            "date": "2025-10-20",
            "count": 1
          },
          {
            "date": "2025-10-23",
            "count": 1
          },
          {
            "date": "2025-11-07",
            "count": 1
          },
          {
            "date": "2025-11-13",
            "count": 1
          },
          {
            "date": "2025-11-20",
            "count": 1
          },
          {
            "date": "2025-11-24",
            "count": 1
          },
          {
            "date": "2025-12-01",
            "count": 2
          },
          {
            "date": "2025-12-03",
            "count": 2
          },
          {
            "date": "2025-12-09",
            "count": 2
          },
          {
            "date": "2025-12-16",
            "count": 1
          },
          {
            "date": "2025-12-18",
            "count": 1
          },
          {
            "date": "2025-12-27",
            "count": 1
          },
          {
            "date": "2025-12-31",
            "count": 1
          },
          {
            "date": "2026-01-04",
            "count": 1
          },
          {
            "date": "2026-01-05",
            "count": 1
          },
          {
            "date": "2026-01-09",
            "count": 1
          },
          {
            "date": "2026-01-12",
            "count": 1
          },
          {
            "date": "2026-01-17",
            "count": 1
          },
          {
            "date": "2026-01-19",
            "count": 1
          },
          {
            "date": "2026-01-23",
            "count": 1
          },
          {
            "date": "2026-01-30",
            "count": 1
          },
          {
            "date": "2026-02-02",
            "count": 1
          },
          {
            "date": "2026-02-03",
            "count": 1
          },
          {
            "date": "2026-02-08",
            "count": 1
          },
          {
            "date": "2026-02-10",
            "count": 1
          },
          {
            "date": "2026-02-12",
            "count": 1
          },
          {
            "date": "2026-02-13",
            "count": 1
          },
          {
            "date": "2026-02-23",
            "count": 1
          },
          {
            "date": "2026-02-24",
            "count": 1
          },
          {
            "date": "2026-03-03",
            "count": 1
          },
          {
            "date": "2026-03-10",
            "count": 1
          },
          {
            "date": "2026-03-12",
            "count": 1
          },
          {
            "date": "2026-03-16",
            "count": 1
          },
          {
            "date": "2026-03-17",
            "count": 1
          },
          {
            "date": "2026-03-19",
            "count": 1
          },
          {
            "date": "2026-03-21",
            "count": 1
          },
          {
            "date": "2026-03-26",
            "count": 1
          },
          {
            "date": "2026-03-29",
            "count": 1
          },
          {
            "date": "2026-04-06",
            "count": 1
          },
          {
            "date": "2026-04-12",
            "count": 1
          },
          {
            "date": "2026-04-15",
            "count": 1
          },
          {
            "date": "2026-05-05",
            "count": 1
          },
          {
            "date": "2026-05-08",
            "count": 1
          },
          {
            "date": "2026-05-12",
            "count": 1
          },
          {
            "date": "2026-05-16",
            "count": 1
          },
          {
            "date": "2026-05-18",
            "count": 2
          },
          {
            "date": "2026-05-27",
            "count": 1
          },
          {
            "date": "2026-05-28",
            "count": 1
          },
          {
            "date": "2026-05-30",
            "count": 1
          },
          {
            "date": "2026-06-02",
            "count": 1
          },
          {
            "date": "2026-06-03",
            "count": 1
          },
          {
            "date": "2026-06-16",
            "count": 2
          },
          {
            "date": "2026-06-20",
            "count": 1
          },
          {
            "date": "2026-06-24",
            "count": 2
          },
          {
            "date": "2026-06-27",
            "count": 2
          },
          {
            "date": "2026-06-29",
            "count": 1
          },
          {
            "date": "2026-07-05",
            "count": 1
          },
          {
            "date": "2026-07-09",
            "count": 2
          },
          {
            "date": "2026-07-10",
            "count": 1
          }
        ],
        "complete": true,
        "collected": 305,
        "total_stars": 305
      },
      "open_issues_and_prs": 29
    },
    "ai_readiness": {
      "has_nix": false,
      "example_dirs": [
        "notebooks"
      ],
      "has_llms_txt": false,
      "has_dockerfile": false,
      "has_mcp_signal": false,
      "bootstrap_files": [],
      "api_schema_files": [],
      "has_devcontainer": false,
      "typecheck_configs": [],
      "toolchain_manifests": [],
      "largest_source_bytes": 30684,
      "source_files_sampled": 106,
      "oversized_source_files": 0,
      "agent_instruction_files": [],
      "agent_instruction_max_bytes": null
    },
    "dependencies": {
      "manifests": [
        "pyproject.toml"
      ],
      "advisories": {
        "error": null,
        "scope": "repository_graph",
        "source": "osv",
        "findings": [
          {
            "name": "cryptography",
            "direct": false,
            "version": "46.0.3",
            "severity": "critical",
            "ecosystem": "pypi",
            "cvss_score": 9.8,
            "advisory_ids": [
              "GHSA-537c-gmf6-5ccf",
              "GHSA-m959-cc7f-wv43",
              "GHSA-p423-j2cm-9vmq",
              "GHSA-r6ph-v2qm-q3c2",
              "PYSEC-2026-2141",
              "PYSEC-2026-35",
              "PYSEC-2026-36"
            ],
            "fixed_version": "48.0.1",
            "advisory_count": 7,
            "oldest_advisory_days": 160
          },
          {
            "name": "pillow",
            "direct": false,
            "version": "12.1.0",
            "severity": "critical",
            "ecosystem": "pypi",
            "cvss_score": 9.1,
            "advisory_ids": [
              "GHSA-45hq-cxwh-f6vc",
              "GHSA-4x4j-2g7c-83w6",
              "GHSA-5x94-69rx-g8h2",
              "GHSA-5xmw-vc9v-4wf2",
              "GHSA-62p4-gmf7-7g93",
              "GHSA-6r8x-57c9-28j4",
              "GHSA-8v84-f9pq-wr9x",
              "GHSA-9hw9-ch79-4vh6",
              "GHSA-cfh3-3jmp-rvhc",
              "GHSA-fj7v-r99m-22gq"
            ],
            "fixed_version": "12.3.0",
            "advisory_count": 33,
            "oldest_advisory_days": 160
          },
          {
            "name": "click",
            "direct": false,
            "version": "8.3.1",
            "severity": "high",
            "ecosystem": "pypi",
            "cvss_score": 7.2,
            "advisory_ids": [
              "PYSEC-2026-2132"
            ],
            "fixed_version": "8.3.3",
            "advisory_count": 1,
            "oldest_advisory_days": 82
          },
          {
            "name": "protobuf",
            "direct": false,
            "version": "6.33.4",
            "severity": "high",
            "ecosystem": "pypi",
            "cvss_score": 7.5,
            "advisory_ids": [
              "GHSA-7gcm-g887-7qv7",
              "PYSEC-2026-1805"
            ],
            "fixed_version": "6.33.5",
            "advisory_count": 2,
            "oldest_advisory_days": 179
          },
          {
            "name": "pyarrow",
            "direct": false,
            "version": "23.0.0",
            "severity": "high",
            "ecosystem": "pypi",
            "cvss_score": 7,
            "advisory_ids": [
              "GHSA-rgxp-2hwp-jwgg",
              "PYSEC-2026-113"
            ],
            "fixed_version": "23.0.1",
            "advisory_count": 2,
            "oldest_advisory_days": 154
          },
          {
            "name": "soupsieve",
            "direct": false,
            "version": "2.8.3",
            "severity": "high",
            "ecosystem": "pypi",
            "cvss_score": 7.5,
            "advisory_ids": [
              "GHSA-2wc2-fm75-p42x",
              "GHSA-836r-79rf-4m37",
              "PYSEC-2026-3071",
              "PYSEC-2026-3072"
            ],
            "fixed_version": "2.8.4",
            "advisory_count": 4,
            "oldest_advisory_days": 12
          },
          {
            "name": "tornado",
            "direct": false,
            "version": "6.5.4",
            "severity": "high",
            "ecosystem": "pypi",
            "cvss_score": 7.7,
            "advisory_ids": [
              "GHSA-3x9g-8vmp-wqvf",
              "GHSA-78cv-mqj4-43f7",
              "GHSA-cx3h-4qpv-8hc9",
              "GHSA-fqwm-6jpj-5wxc",
              "GHSA-mgf9-4vpg-hj56",
              "GHSA-pw6j-qg29-8w7f",
              "GHSA-qjxf-f2mg-c6mc",
              "PYSEC-2026-140",
              "PYSEC-2026-2287",
              "PYSEC-2026-3387"
            ],
            "fixed_version": "6.5.7",
            "advisory_count": 12,
            "oldest_advisory_days": 132
          },
          {
            "name": "urllib3",
            "direct": false,
            "version": "2.6.3",
            "severity": "high",
            "ecosystem": "pypi",
            "cvss_score": 7.5,
            "advisory_ids": [
              "GHSA-mf9v-mfxr-j63j",
              "GHSA-qccp-gfcp-xxvc",
              "PYSEC-2026-141",
              "PYSEC-2026-142"
            ],
            "fixed_version": "2.7.0",
            "advisory_count": 4,
            "oldest_advisory_days": 71
          },
          {
            "name": "idna",
            "direct": false,
            "version": "3.11",
            "severity": "moderate",
            "ecosystem": "pypi",
            "cvss_score": 5.3,
            "advisory_ids": [
              "GHSA-65pc-fj4g-8rjx",
              "PYSEC-2026-215"
            ],
            "fixed_version": "3.15",
            "advisory_count": 2,
            "oldest_advisory_days": 63
          },
          {
            "name": "pytest",
            "direct": false,
            "version": "9.0.2",
            "severity": "moderate",
            "ecosystem": "pypi",
            "cvss_score": 6.8,
            "advisory_ids": [
              "GHSA-6w46-j5rx-g56g",
              "PYSEC-2026-1845"
            ],
            "fixed_version": "9.0.3",
            "advisory_count": 2,
            "oldest_advisory_days": 180
          },
          {
            "name": "requests",
            "direct": false,
            "version": "2.32.5",
            "severity": "moderate",
            "ecosystem": "pypi",
            "cvss_score": 5.5,
            "advisory_ids": [
              "GHSA-gc5v-m9x4-r6x2",
              "PYSEC-2026-2275"
            ],
            "fixed_version": "2.33.0",
            "advisory_count": 2,
            "oldest_advisory_days": 118
          },
          {
            "name": "setuptools",
            "direct": false,
            "version": "80.10.1",
            "severity": "moderate",
            "ecosystem": "pypi",
            "cvss_score": 6.1,
            "advisory_ids": [
              "GHSA-h35f-9h28-mq5c",
              "PYSEC-2026-3447"
            ],
            "fixed_version": "83.0.0",
            "advisory_count": 2,
            "oldest_advisory_days": 13
          },
          {
            "name": "pygments",
            "direct": false,
            "version": "2.19.2",
            "severity": "low",
            "ecosystem": "pypi",
            "cvss_score": 3.3,
            "advisory_ids": [
              "GHSA-5239-wwwm-4pmq",
              "PYSEC-2026-2987"
            ],
            "fixed_version": "2.20.0",
            "advisory_count": 2,
            "oldest_advisory_days": 121
          }
        ],
        "collected": true,
        "truncated": false,
        "by_severity": {
          "low": 1,
          "high": 6,
          "critical": 2,
          "moderate": 4
        },
        "advisory_count": 75,
        "affected_count": 13,
        "assessed_count": 204,
        "assessed_package": null,
        "unassessed_count": 0,
        "direct_affected_count": 0
      },
      "ecosystems": [
        "pypi"
      ],
      "dependencies": [
        {
          "name": "anndata",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=0.7.4"
        },
        {
          "name": "mudata",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": null
        },
        {
          "name": "scanpy",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": null
        },
        {
          "name": "numba",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": null
        },
        {
          "name": "tqdm",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=4.0"
        },
        {
          "name": "docrep",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=0.3.1"
        },
        {
          "name": "plotnine",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=0.10.1"
        },
        {
          "name": "session-info2",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": null
        },
        {
          "name": "pandas",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": "<3"
        }
      ],
      "all_dependencies": {
        "error": null,
        "source": "github-sbom",
        "packages": [
          {
            "name": "anndata",
            "direct": true,
            "version": "0.11.4",
            "ecosystem": "pypi"
          },
          {
            "name": "anndata",
            "direct": true,
            "version": "0.12.7",
            "ecosystem": "pypi"
          },
          {
            "name": "docrep",
            "direct": true,
            "version": "0.3.2",
            "ecosystem": "pypi"
          },
          {
            "name": "mudata",
            "direct": true,
            "version": "0.3.2",
            "ecosystem": "pypi"
          },
          {
            "name": "numba",
            "direct": true,
            "version": "0.63.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pandas",
            "direct": true,
            "version": "2.3.3",
            "ecosystem": "pypi"
          },
          {
            "name": "plotnine",
            "direct": true,
            "version": "0.15.2",
            "ecosystem": "pypi"
          },
          {
            "name": "scanpy",
            "direct": true,
            "version": "1.11.5",
            "ecosystem": "pypi"
          },
          {
            "name": "scanpy",
            "direct": true,
            "version": "1.12",
            "ecosystem": "pypi"
          },
          {
            "name": "session-info2",
            "direct": true,
            "version": "0.3",
            "ecosystem": "pypi"
          },
          {
            "name": "tqdm",
            "direct": true,
            "version": "4.67.1",
            "ecosystem": "pypi"
          },
          {
            "name": "accessible-pygments",
            "direct": false,
            "version": "0.0.5",
            "ecosystem": "pypi"
          },
          {
            "name": "adjusttext",
            "direct": false,
            "version": "1.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "alabaster",
            "direct": false,
            "version": "1.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "appnope",
            "direct": false,
            "version": "0.1.4",
            "ecosystem": "pypi"
          },
          {
            "name": "array-api-compat",
            "direct": false,
            "version": "1.13.0",
            "ecosystem": "pypi"
          },
          {
            "name": "asttokens",
            "direct": false,
            "version": "3.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "attrs",
            "direct": false,
            "version": "25.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "babel",
            "direct": false,
            "version": "2.17.0",
            "ecosystem": "pypi"
          },
          {
            "name": "backports-tarfile",
            "direct": false,
            "version": "1.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "beautifulsoup4",
            "direct": false,
            "version": "4.14.3",
            "ecosystem": "pypi"
          },
          {
            "name": "bump2version",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "bumpversion",
            "direct": false,
            "version": "0.6.0",
            "ecosystem": "pypi"
          },
          {
            "name": "cell2cell",
            "direct": false,
            "version": "0.8.4",
            "ecosystem": "pypi"
          },
          {
            "name": "certifi",
            "direct": false,
            "version": "2026.1.4",
            "ecosystem": "pypi"
          },
          {
            "name": "cffi",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "cfgv",
            "direct": false,
            "version": "3.5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "charset-normalizer",
            "direct": false,
            "version": "3.4.4",
            "ecosystem": "pypi"
          },
          {
            "name": "click",
            "direct": false,
            "version": "8.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "colorama",
            "direct": false,
            "version": "0.4.6",
            "ecosystem": "pypi"
          },
          {
            "name": "comm",
            "direct": false,
            "version": "0.2.3",
            "ecosystem": "pypi"
          },
          {
            "name": "contourpy",
            "direct": false,
            "version": "1.3.2",
            "ecosystem": "pypi"
          },
          {
            "name": "contourpy",
            "direct": false,
            "version": "1.3.3",
            "ecosystem": "pypi"
          },
          {
            "name": "corneto",
            "direct": false,
            "version": "0.9.1a6",
            "ecosystem": "pypi"
          },
          {
            "name": "coverage",
            "direct": false,
            "version": "7.13.1",
            "ecosystem": "pypi"
          },
          {
            "name": "cryptography",
            "direct": false,
            "version": "46.0.3",
            "ecosystem": "pypi"
          },
          {
            "name": "cvxpy-base",
            "direct": false,
            "version": "1.7.5",
            "ecosystem": "pypi"
          },
          {
            "name": "cycler",
            "direct": false,
            "version": "0.12.1",
            "ecosystem": "pypi"
          },
          {
            "name": "debugpy",
            "direct": false,
            "version": "1.8.19",
            "ecosystem": "pypi"
          },
          {
            "name": "decorator",
            "direct": false,
            "version": "5.2.1",
            "ecosystem": "pypi"
          },
          {
            "name": "decoupler",
            "direct": false,
            "version": "2.1.4",
            "ecosystem": "pypi"
          },
          {
            "name": "distlib",
            "direct": false,
            "version": "0.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "docutils",
            "direct": false,
            "version": "0.21.2",
            "ecosystem": "pypi"
          },
          {
            "name": "donfig",
            "direct": false,
            "version": "0.8.1.post1",
            "ecosystem": "pypi"
          },
          {
            "name": "et-xmlfile",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "exceptiongroup",
            "direct": false,
            "version": "1.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "executing",
            "direct": false,
            "version": "2.2.1",
            "ecosystem": "pypi"
          },
          {
            "name": "fast-array-utils",
            "direct": false,
            "version": "1.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "fastjsonschema",
            "direct": false,
            "version": "2.21.2",
            "ecosystem": "pypi"
          },
          {
            "name": "filelock",
            "direct": false,
            "version": "3.20.3",
            "ecosystem": "pypi"
          },
          {
            "name": "fonttools",
            "direct": false,
            "version": "4.61.1",
            "ecosystem": "pypi"
          },
          {
            "name": "formulaic",
            "direct": false,
            "version": "1.2.1",
            "ecosystem": "pypi"
          },
          {
            "name": "formulaic-contrasts",
            "direct": false,
            "version": "1.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "google-crc32c",
            "direct": false,
            "version": "1.8.0",
            "ecosystem": "pypi"
          },
          {
            "name": "greenlet",
            "direct": false,
            "version": "3.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "gseapy",
            "direct": false,
            "version": "1.1.11",
            "ecosystem": "pypi"
          },
          {
            "name": "h5py",
            "direct": false,
            "version": "3.15.1",
            "ecosystem": "pypi"
          },
          {
            "name": "highspy",
            "direct": false,
            "version": "1.12.0",
            "ecosystem": "pypi"
          },
          {
            "name": "id",
            "direct": false,
            "version": "1.5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "identify",
            "direct": false,
            "version": "2.6.16",
            "ecosystem": "pypi"
          },
          {
            "name": "idna",
            "direct": false,
            "version": "3.11",
            "ecosystem": "pypi"
          },
          {
            "name": "imagesize",
            "direct": false,
            "version": "1.4.1",
            "ecosystem": "pypi"
          },
          {
            "name": "importlib-metadata",
            "direct": false,
            "version": "8.7.1",
            "ecosystem": "pypi"
          },
          {
            "name": "inflect",
            "direct": false,
            "version": "7.5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "iniconfig",
            "direct": false,
            "version": "2.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "interface-meta",
            "direct": false,
            "version": "1.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "ipykernel",
            "direct": false,
            "version": "7.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "ipython",
            "direct": false,
            "version": "8.38.0",
            "ecosystem": "pypi"
          },
          {
            "name": "ipython",
            "direct": false,
            "version": "9.9.0",
            "ecosystem": "pypi"
          },
          {
            "name": "ipython-pygments-lexers",
            "direct": false,
            "version": "1.1.1",
            "ecosystem": "pypi"
          },
          {
            "name": "jaraco-classes",
            "direct": false,
            "version": "3.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jaraco-context",
            "direct": false,
            "version": "6.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jaraco-functools",
            "direct": false,
            "version": "4.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jedi",
            "direct": false,
            "version": "0.19.2",
            "ecosystem": "pypi"
          },
          {
            "name": "jeepney",
            "direct": false,
            "version": "0.9.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jinja2",
            "direct": false,
            "version": "3.1.6",
            "ecosystem": "pypi"
          },
          {
            "name": "joblib",
            "direct": false,
            "version": "1.5.3",
            "ecosystem": "pypi"
          },
          {
            "name": "jsonschema",
            "direct": false,
            "version": "4.26.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jsonschema-specifications",
            "direct": false,
            "version": "2025.9.1",
            "ecosystem": "pypi"
          },
          {
            "name": "jupyter-cache",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "jupyter-client",
            "direct": false,
            "version": "8.8.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jupyter-core",
            "direct": false,
            "version": "5.9.1",
            "ecosystem": "pypi"
          },
          {
            "name": "keyring",
            "direct": false,
            "version": "25.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "kiwisolver",
            "direct": false,
            "version": "1.4.9",
            "ecosystem": "pypi"
          },
          {
            "name": "kneed",
            "direct": false,
            "version": "0.8.5",
            "ecosystem": "pypi"
          },
          {
            "name": "latexcodec",
            "direct": false,
            "version": "3.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "legacy-api-wrap",
            "direct": false,
            "version": "1.5",
            "ecosystem": "pypi"
          },
          {
            "name": "legendkit",
            "direct": false,
            "version": "0.3.6",
            "ecosystem": "pypi"
          },
          {
            "name": "liana",
            "direct": false,
            "version": "1.7.1",
            "ecosystem": "pypi"
          },
          {
            "name": "llvmlite",
            "direct": false,
            "version": "0.46.0",
            "ecosystem": "pypi"
          },
          {
            "name": "markdown-it-py",
            "direct": false,
            "version": "3.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "markdown-it-py",
            "direct": false,
            "version": "4.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "markupsafe",
            "direct": false,
            "version": "3.0.3",
            "ecosystem": "pypi"
          },
          {
            "name": "marsilea",
            "direct": false,
            "version": "0.5.7",
            "ecosystem": "pypi"
          },
          {
            "name": "matplotlib",
            "direct": false,
            "version": "3.10.8",
            "ecosystem": "pypi"
          },
          {
            "name": "matplotlib-inline",
            "direct": false,
            "version": "0.2.1",
            "ecosystem": "pypi"
          },
          {
            "name": "mdit-py-plugins",
            "direct": false,
            "version": "0.5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "mdurl",
            "direct": false,
            "version": "0.1.2",
            "ecosystem": "pypi"
          },
          {
            "name": "mizani",
            "direct": false,
            "version": "0.14.3",
            "ecosystem": "pypi"
          },
          {
            "name": "mofapy2",
            "direct": false,
            "version": "0.7.3",
            "ecosystem": "pypi"
          },
          {
            "name": "mofax",
            "direct": false,
            "version": "0.3.7",
            "ecosystem": "pypi"
          },
          {
            "name": "more-itertools",
            "direct": false,
            "version": "10.8.0",
            "ecosystem": "pypi"
          },
          {
            "name": "muon",
            "direct": false,
            "version": "0.1.7",
            "ecosystem": "pypi"
          },
          {
            "name": "myst-nb",
            "direct": false,
            "version": "1.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "myst-parser",
            "direct": false,
            "version": "4.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "myst-parser",
            "direct": false,
            "version": "5.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "narwhals",
            "direct": false,
            "version": "2.15.0",
            "ecosystem": "pypi"
          },
          {
            "name": "natsort",
            "direct": false,
            "version": "8.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "nbclient",
            "direct": false,
            "version": "0.10.4",
            "ecosystem": "pypi"
          },
          {
            "name": "nbformat",
            "direct": false,
            "version": "5.10.4",
            "ecosystem": "pypi"
          },
          {
            "name": "nest-asyncio",
            "direct": false,
            "version": "1.6.0",
            "ecosystem": "pypi"
          },
          {
            "name": "networkx",
            "direct": false,
            "version": "3.4.2",
            "ecosystem": "pypi"
          },
          {
            "name": "networkx",
            "direct": false,
            "version": "3.6.1",
            "ecosystem": "pypi"
          },
          {
            "name": "nh3",
            "direct": false,
            "version": "0.3.2",
            "ecosystem": "pypi"
          },
          {
            "name": "nodeenv",
            "direct": false,
            "version": "1.10.0",
            "ecosystem": "pypi"
          },
          {
            "name": "numcodecs",
            "direct": false,
            "version": "0.16.5",
            "ecosystem": "pypi"
          },
          {
            "name": "numpy",
            "direct": false,
            "version": "2.2.6",
            "ecosystem": "pypi"
          },
          {
            "name": "numpy",
            "direct": false,
            "version": "2.3.5",
            "ecosystem": "pypi"
          },
          {
            "name": "omnipath",
            "direct": false,
            "version": "1.0.12",
            "ecosystem": "pypi"
          },
          {
            "name": "openpyxl",
            "direct": false,
            "version": "3.1.5",
            "ecosystem": "pypi"
          },
          {
            "name": "packaging",
            "direct": false,
            "version": "26.0",
            "ecosystem": "pypi"
          },
          {
            "name": "parso",
            "direct": false,
            "version": "0.8.5",
            "ecosystem": "pypi"
          },
          {
            "name": "patsy",
            "direct": false,
            "version": "1.0.2",
            "ecosystem": "pypi"
          },
          {
            "name": "pexpect",
            "direct": false,
            "version": "4.9.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pillow",
            "direct": false,
            "version": "12.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "platformdirs",
            "direct": false,
            "version": "4.5.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pluggy",
            "direct": false,
            "version": "1.6.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pre-commit",
            "direct": false,
            "version": "4.5.1",
            "ecosystem": "pypi"
          },
          {
            "name": "prompt-toolkit",
            "direct": false,
            "version": "3.0.52",
            "ecosystem": "pypi"
          },
          {
            "name": "protobuf",
            "direct": false,
            "version": "6.33.4",
            "ecosystem": "pypi"
          },
          {
            "name": "psutil",
            "direct": false,
            "version": "7.2.1",
            "ecosystem": "pypi"
          },
          {
            "name": "ptyprocess",
            "direct": false,
            "version": "0.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pure-eval",
            "direct": false,
            "version": "0.2.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pyarrow",
            "direct": false,
            "version": "23.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pybtex",
            "direct": false,
            "version": "0.25.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pybtex-docutils",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pycparser",
            "direct": false,
            "version": "3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pydata-sphinx-theme",
            "direct": false,
            "version": "0.15.4",
            "ecosystem": "pypi"
          },
          {
            "name": "pydeseq2",
            "direct": false,
            "version": "0.5.2",
            "ecosystem": "pypi"
          },
          {
            "name": "pydeseq2",
            "direct": false,
            "version": "0.5.4",
            "ecosystem": "pypi"
          },
          {
            "name": "pygments",
            "direct": false,
            "version": "2.19.2",
            "ecosystem": "pypi"
          },
          {
            "name": "pynndescent",
            "direct": false,
            "version": "0.6.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pyparsing",
            "direct": false,
            "version": "3.3.2",
            "ecosystem": "pypi"
          },
          {
            "name": "pyscipopt",
            "direct": false,
            "version": "5.7.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest",
            "direct": false,
            "version": "9.0.2",
            "ecosystem": "pypi"
          },
          {
            "name": "python-dateutil",
            "direct": false,
            "version": "2.9.0.post0",
            "ecosystem": "pypi"
          },
          {
            "name": "pytz",
            "direct": false,
            "version": "2025.2",
            "ecosystem": "pypi"
          },
          {
            "name": "pywin32-ctypes",
            "direct": false,
            "version": "0.2.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pyyaml",
            "direct": false,
            "version": "6.0.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pyzmq",
            "direct": false,
            "version": "27.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "readme-renderer",
            "direct": false,
            "version": "44.0",
            "ecosystem": "pypi"
          },
          {
            "name": "referencing",
            "direct": false,
            "version": "0.37.0",
            "ecosystem": "pypi"
          },
          {
            "name": "requests",
            "direct": false,
            "version": "2.32.5",
            "ecosystem": "pypi"
          },
          {
            "name": "requests-toolbelt",
            "direct": false,
            "version": "1.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "rfc3986",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "rich",
            "direct": false,
            "version": "14.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "rpds-py",
            "direct": false,
            "version": "0.30.0",
            "ecosystem": "pypi"
          },
          {
            "name": "scikit-learn",
            "direct": false,
            "version": "1.7.2",
            "ecosystem": "pypi"
          },
          {
            "name": "scikit-learn",
            "direct": false,
            "version": "1.8.0",
            "ecosystem": "pypi"
          },
          {
            "name": "scipy",
            "direct": false,
            "version": "1.15.3",
            "ecosystem": "pypi"
          },
          {
            "name": "scipy",
            "direct": false,
            "version": "1.17.0",
            "ecosystem": "pypi"
          },
          {
            "name": "seaborn",
            "direct": false,
            "version": "0.13.2",
            "ecosystem": "pypi"
          },
          {
            "name": "secretstorage",
            "direct": false,
            "version": "3.5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "session-info",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "setuptools",
            "direct": false,
            "version": "80.10.1",
            "ecosystem": "pypi"
          },
          {
            "name": "six",
            "direct": false,
            "version": "1.17.0",
            "ecosystem": "pypi"
          },
          {
            "name": "snowballstemmer",
            "direct": false,
            "version": "3.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "soupsieve",
            "direct": false,
            "version": "2.8.3",
            "ecosystem": "pypi"
          },
          {
            "name": "sphinx",
            "direct": false,
            "version": "8.1.3",
            "ecosystem": "pypi"
          },
          {
            "name": "sphinx-autodoc-typehints",
            "direct": false,
            "version": "3.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "sphinx-book-theme",
            "direct": false,
            "version": "1.1.4",
            "ecosystem": "pypi"
          },
          {
            "name": "sphinx-copybutton",
            "direct": false,
            "version": "0.5.2",
            "ecosystem": "pypi"
          },
          {
            "name": "sphinx-tabs",
            "direct": false,
            "version": "3.4.7",
            "ecosystem": "pypi"
          },
          {
            "name": "sphinxcontrib-applehelp",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "sphinxcontrib-bibtex",
            "direct": false,
            "version": "2.6.5",
            "ecosystem": "pypi"
          },
          {
            "name": "sphinxcontrib-devhelp",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "sphinxcontrib-htmlhelp",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "sphinxcontrib-jsmath",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "sphinxcontrib-qthelp",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "sphinxcontrib-serializinghtml",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "sphinxext-opengraph",
            "direct": false,
            "version": "0.13.0",
            "ecosystem": "pypi"
          },
          {
            "name": "sqlalchemy",
            "direct": false,
            "version": "2.0.46",
            "ecosystem": "pypi"
          },
          {
            "name": "stack-data",
            "direct": false,
            "version": "0.6.3",
            "ecosystem": "pypi"
          },
          {
            "name": "statannotations",
            "direct": false,
            "version": "0.7.2",
            "ecosystem": "pypi"
          },
          {
            "name": "statsmodels",
            "direct": false,
            "version": "0.14.6",
            "ecosystem": "pypi"
          },
          {
            "name": "stdlib-list",
            "direct": false,
            "version": "0.12.0",
            "ecosystem": "pypi"
          },
          {
            "name": "tabulate",
            "direct": false,
            "version": "0.9.0",
            "ecosystem": "pypi"
          },
          {
            "name": "tensorly",
            "direct": false,
            "version": "0.9.0",
            "ecosystem": "pypi"
          },
          {
            "name": "threadpoolctl",
            "direct": false,
            "version": "3.6.0",
            "ecosystem": "pypi"
          },
          {
            "name": "tomli",
            "direct": false,
            "version": "2.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "tornado",
            "direct": false,
            "version": "6.5.4",
            "ecosystem": "pypi"
          },
          {
            "name": "traitlets",
            "direct": false,
            "version": "5.14.3",
            "ecosystem": "pypi"
          },
          {
            "name": "twine",
            "direct": false,
            "version": "6.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "typeguard",
            "direct": false,
            "version": "4.4.4",
            "ecosystem": "pypi"
          },
          {
            "name": "typing-extensions",
            "direct": false,
            "version": "4.15.0",
            "ecosystem": "pypi"
          },
          {
            "name": "tzdata",
            "direct": false,
            "version": "2025.3",
            "ecosystem": "pypi"
          },
          {
            "name": "umap-learn",
            "direct": false,
            "version": "0.5.11",
            "ecosystem": "pypi"
          },
          {
            "name": "urllib3",
            "direct": false,
            "version": "2.6.3",
            "ecosystem": "pypi"
          },
          {
            "name": "virtualenv",
            "direct": false,
            "version": "20.36.1",
            "ecosystem": "pypi"
          },
          {
            "name": "wcwidth",
            "direct": false,
            "version": "0.3.2",
            "ecosystem": "pypi"
          },
          {
            "name": "wrapt",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "xlrd",
            "direct": false,
            "version": "2.0.2",
            "ecosystem": "pypi"
          },
          {
            "name": "zarr",
            "direct": false,
            "version": "3.1.5",
            "ecosystem": "pypi"
          },
          {
            "name": "zipp",
            "direct": false,
            "version": "3.23.0",
            "ecosystem": "pypi"
          }
        ],
        "collected": true,
        "truncated": false,
        "total_count": 204,
        "direct_count": 11,
        "indirect_count": 193
      }
    },
    "maintainership": {
      "issues": {
        "open_prs": 2,
        "merged_prs": 46,
        "open_issues": 27,
        "closed_ratio": 0.85,
        "closed_issues": 153,
        "closed_unmerged_prs": 18
      },
      "bus_factor": 1,
      "bot_contributors": 1,
      "top_contributors": [
        {
          "type": "User",
          "login": "dbdimitrov",
          "commits": 180,
          "avatar_url": "https://avatars.githubusercontent.com/u/50865230?v=4"
        },
        {
          "type": "User",
          "login": "npalacioescat",
          "commits": 61,
          "avatar_url": "https://avatars.githubusercontent.com/u/22887412?v=4"
        },
        {
          "type": "User",
          "login": "pablormier",
          "commits": 10,
          "avatar_url": "https://avatars.githubusercontent.com/u/1433810?v=4"
        },
        {
          "type": "User",
          "login": "AtheerAS",
          "commits": 8,
          "avatar_url": "https://avatars.githubusercontent.com/u/89348482?v=4"
        },
        {
          "type": "User",
          "login": "robinfallegger",
          "commits": 7,
          "avatar_url": "https://avatars.githubusercontent.com/u/10638014?v=4"
        },
        {
          "type": "User",
          "login": "demian1",
          "commits": 7,
          "avatar_url": "https://avatars.githubusercontent.com/u/186915569?v=4"
        },
        {
          "type": "User",
          "login": "fbnrst",
          "commits": 6,
          "avatar_url": "https://avatars.githubusercontent.com/u/7300030?v=4"
        },
        {
          "type": "User",
          "login": "PauBadiaM",
          "commits": 6,
          "avatar_url": "https://avatars.githubusercontent.com/u/44896790?v=4"
        },
        {
          "type": "User",
          "login": "psl-schaefer",
          "commits": 3,
          "avatar_url": "https://avatars.githubusercontent.com/u/62442385?v=4"
        },
        {
          "type": "User",
          "login": "deeenes",
          "commits": 2,
          "avatar_url": "https://avatars.githubusercontent.com/u/2679889?v=4"
        }
      ],
      "contributors_sampled": 16,
      "top_contributor_share": 0.608
    },
    "quality_signals": {
      "has_ci": true,
      "has_tests": true,
      "ci_workflows": [
        "build.yaml",
        "release.yaml",
        "test.yml"
      ],
      "has_docs_dir": true,
      "linter_configs": [],
      "has_editorconfig": false,
      "has_linter_config": true,
      "has_precommit_config": true
    },
    "security_signals": {
      "lockfiles": [
        "uv.lock"
      ],
      "scorecard": {
        "checks": [
          {
            "name": "Binary-Artifacts",
            "score": 10,
            "reason": "no binaries found in the repo",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
          },
          {
            "name": "Branch-Protection",
            "score": null,
            "reason": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
          },
          {
            "name": "CI-Tests",
            "score": 10,
            "reason": "4 out of 4 merged PRs checked by a CI test -- score normalized to 10",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
          },
          {
            "name": "CII-Best-Practices",
            "score": 0,
            "reason": "no effort to earn an OpenSSF best practices badge detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
          },
          {
            "name": "Code-Review",
            "score": 2,
            "reason": "Found 2/7 approved changesets -- score normalized to 2",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
          },
          {
            "name": "Contributors",
            "score": 10,
            "reason": "project has 15 contributing companies or organizations",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
          },
          {
            "name": "Dangerous-Workflow",
            "score": 10,
            "reason": "no dangerous workflow patterns detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
          },
          {
            "name": "Dependency-Update-Tool",
            "score": 0,
            "reason": "no update tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
          },
          {
            "name": "Fuzzing",
            "score": 0,
            "reason": "project is not fuzzed",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
          },
          {
            "name": "License",
            "score": 10,
            "reason": "license file detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
          },
          {
            "name": "Maintained",
            "score": 10,
            "reason": "30 commit(s) and 7 issue activity found in the last 90 days -- score normalized to 10",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
          },
          {
            "name": "Packaging",
            "score": 10,
            "reason": "packaging workflow detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
          },
          {
            "name": "Pinned-Dependencies",
            "score": 0,
            "reason": "dependency not pinned by hash detected -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
          },
          {
            "name": "SAST",
            "score": 0,
            "reason": "SAST tool is not run on all commits -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
          },
          {
            "name": "Security-Policy",
            "score": 0,
            "reason": "security policy file not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
          },
          {
            "name": "Signed-Releases",
            "score": null,
            "reason": "no releases found",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
          },
          {
            "name": "Token-Permissions",
            "score": 0,
            "reason": "detected GitHub workflow tokens with excessive permissions",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
          },
          {
            "name": "Vulnerabilities",
            "score": 0,
            "reason": "41 existing vulnerabilities detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
          }
        ],
        "commit": "705bcf9dd9faa2257fee30e624a9690d0ddb932f",
        "ran_at": "2026-07-21T21:22:03Z",
        "aggregate_score": 4.3,
        "scorecard_version": "v5.5.0"
      },
      "has_codeql_workflow": false,
      "has_security_policy": false,
      "has_dependabot_config": false
    }
  },
  "config": {
    "disabled_metrics": [],
    "disabled_categories": [],
    "disabled_components": {}
  },
  "source": {
    "url": "https://github.com/saezlab/liana-py",
    "host": "github.com",
    "name": "liana-py",
    "owner": "saezlab"
  },
  "metrics": {
    "overall": {
      "key": "overall",
      "band": "good",
      "name": "Overall health",
      "note": null,
      "notes": [],
      "value": 74,
      "inputs": {
        "security": 54,
        "vitality": 84,
        "community": 61,
        "governance": 68,
        "engineering": 96
      },
      "components": []
    },
    "categories": [
      {
        "key": "vitality",
        "band": "good",
        "name": "Vitality",
        "value": 84,
        "weight": 0.22,
        "metrics": [
          {
            "key": "development_activity",
            "band": "good",
            "name": "Development activity",
            "note": null,
            "notes": [],
            "value": 79,
            "inputs": {
              "commits_last_year": 181,
              "human_commit_share": 0.97,
              "days_since_last_push": 5,
              "active_weeks_last_year": 22
            },
            "components": [
              {
                "key": "push_recency",
                "name": "Push recency",
                "detail": "last push 5 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "push_recency",
                    "params": {
                      "days": 5
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_cadence",
                "name": "Commit cadence",
                "detail": "22/52 weeks with commits",
                "points": 15.2,
                "status": "partial",
                "details": [
                  {
                    "code": "commit_cadence_weeks",
                    "params": {
                      "weeks": 22
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_volume",
                "name": "Commit volume",
                "detail": "181 commits in the last year",
                "points": 18,
                "status": "met",
                "details": [
                  {
                    "code": "commits_last_year",
                    "params": {
                      "count": 181
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "openssf_scorecard_maintained",
                "name": "OpenSSF Scorecard: Maintained",
                "detail": "30 commit(s) and 7 issue activity found in the last 90 days -- score normalized to 10",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "release_discipline",
            "band": "excellent",
            "name": "Release discipline",
            "note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "openssf_scorecard_signed_releases"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 92,
            "inputs": {
              "releases_count": 24,
              "latest_release_tag": "v1.8.1",
              "releases_from_tags": false,
              "days_since_latest_release": 5,
              "mean_days_between_releases": 60.5
            },
            "components": [
              {
                "key": "ships_releases",
                "name": "Ships releases",
                "detail": "24 releases published",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "releases_published",
                    "params": {
                      "count": 24
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "release_recency",
                "name": "Release recency",
                "detail": "latest release 5 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "release_recency",
                    "params": {
                      "days": 5
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "release_cadence",
                "name": "Release cadence",
                "detail": "a release every ~60.5 days",
                "points": 19.8,
                "status": "partial",
                "details": [
                  {
                    "code": "release_cadence",
                    "params": {
                      "gap": 60.5
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "openssf_scorecard_signed_releases",
                "name": "OpenSSF Scorecard: Signed-Releases",
                "detail": "no releases found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 10
              }
            ]
          },
          {
            "key": "abandonment",
            "band": "excellent",
            "name": "Abandonment",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "cap": null,
              "state": "maintained",
              "guards": [],
              "signals": [],
              "red_flag": false,
              "multiplier_pct": 100,
              "declared_reason": null,
              "unverified_reason": null,
              "unanswered_open_prs": null,
              "unanswered_open_issues": null,
              "days_since_last_merged_pr": null,
              "days_since_last_human_commit": 5,
              "days_since_last_human_commit_is_floor": false
            },
            "components": [
              {
                "key": "project_is_still_maintained",
                "name": "Project is still maintained",
                "detail": "last human commit 5 days ago",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "abandonment_maintained",
                    "params": {
                      "days": 5
                    }
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Is the project alive — is code being written and are releases shipping?"
      },
      {
        "key": "community",
        "band": "moderate",
        "name": "Community & Adoption",
        "value": 61,
        "weight": 0.18,
        "metrics": [
          {
            "key": "popularity",
            "band": "moderate",
            "name": "Popularity & adoption",
            "note": null,
            "notes": [],
            "value": 53,
            "inputs": {
              "forks": 34,
              "stars": 305,
              "watchers": 1,
              "growth_state": "organic",
              "growth_factor_pct": 100
            },
            "components": [
              {
                "key": "stars",
                "name": "Stars",
                "detail": "305 stars",
                "points": 40.3,
                "status": "partial",
                "details": [
                  {
                    "code": "stars",
                    "params": {
                      "count": 305
                    }
                  }
                ],
                "max_points": 60
              },
              {
                "key": "forks",
                "name": "Forks",
                "detail": "34 forks",
                "points": 12.7,
                "status": "partial",
                "details": [
                  {
                    "code": "forks",
                    "params": {
                      "count": 34
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "watchers",
                "name": "Watchers",
                "detail": "1 watchers",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "watchers",
                    "params": {
                      "count": 1
                    }
                  }
                ],
                "max_points": 15
              }
            ]
          },
          {
            "key": "community_health",
            "band": "good",
            "name": "Community health",
            "note": null,
            "notes": [],
            "value": 70,
            "inputs": {
              "has_readme": true,
              "has_license": true,
              "has_contributing": true,
              "has_issue_template": false,
              "has_code_of_conduct": false,
              "has_pull_request_template": false
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 22.5,
                "status": "met",
                "details": [],
                "max_points": 22.5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "recognized license (BSD-3-Clause)",
                "points": 22.5,
                "status": "met",
                "details": [
                  {
                    "code": "license_standard",
                    "params": {}
                  },
                  {
                    "code": "license_spdx",
                    "params": {
                      "spdx": "BSD-3-Clause"
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributing_guide",
                "name": "CONTRIBUTING guide",
                "detail": null,
                "points": 18,
                "status": "met",
                "details": [],
                "max_points": 18
              },
              {
                "key": "code_of_conduct",
                "name": "Code of conduct",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 13.5
              },
              {
                "key": "issue_template",
                "name": "Issue template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.2
              },
              {
                "key": "pr_template",
                "name": "PR template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.3
              }
            ]
          }
        ],
        "description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
      },
      {
        "key": "governance",
        "band": "moderate",
        "name": "Sustainability & Governance",
        "value": 68,
        "weight": 0.24,
        "metrics": [
          {
            "key": "maintainer_resilience",
            "band": "at_risk",
            "name": "Maintainer resilience (bus factor)",
            "note": null,
            "notes": [],
            "value": 41,
            "inputs": {
              "bus_factor": 1,
              "contributors_sampled": 16,
              "top_contributor_share": 0.608
            },
            "components": [
              {
                "key": "bus_factor",
                "name": "Bus factor",
                "detail": "1 contributor(s) cover half of all commits",
                "points": 9,
                "status": "partial",
                "details": [
                  {
                    "code": "bus_factor",
                    "params": {
                      "count": 1
                    }
                  }
                ],
                "max_points": 54
              },
              {
                "key": "commit_distribution",
                "name": "Commit distribution",
                "detail": "top contributor authored 61% of commits",
                "points": 8.8,
                "status": "partial",
                "details": [
                  {
                    "code": "top_contributor_share",
                    "params": {
                      "share": 61
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributor_breadth",
                "name": "Contributor breadth",
                "detail": "16 contributors",
                "points": 13.5,
                "status": "met",
                "details": [
                  {
                    "code": "contributors_sampled",
                    "params": {
                      "count": 16
                    }
                  }
                ],
                "max_points": 13.5
              },
              {
                "key": "openssf_scorecard_contributors",
                "name": "OpenSSF Scorecard: Contributors",
                "detail": "project has 15 contributing companies or organizations",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "responsiveness",
            "band": "good",
            "name": "Issue & PR responsiveness",
            "note": null,
            "notes": [],
            "value": 70,
            "inputs": {
              "merged_prs": 46,
              "open_issues": 27,
              "closed_issues": 153,
              "issue_closed_ratio": 0.85,
              "closed_unmerged_prs": 18
            },
            "components": [
              {
                "key": "issue_resolution",
                "name": "Issue resolution",
                "detail": "85% of issues closed",
                "points": 39.7,
                "status": "partial",
                "details": [
                  {
                    "code": "issues_closed_share",
                    "params": {
                      "share": 85
                    }
                  }
                ],
                "max_points": 46.75
              },
              {
                "key": "pr_acceptance",
                "name": "PR acceptance",
                "detail": "46/64 decided PRs merged",
                "points": 27.5,
                "status": "partial",
                "details": [
                  {
                    "code": "decided_prs_merged",
                    "params": {
                      "merged": 46,
                      "decided": 64
                    }
                  }
                ],
                "max_points": 38.25
              },
              {
                "key": "openssf_scorecard_code_review",
                "name": "OpenSSF Scorecard: Code-Review",
                "detail": "Found 2/7 approved changesets -- score normalized to 2",
                "points": 3,
                "status": "partial",
                "details": [],
                "max_points": 15
              }
            ]
          },
          {
            "key": "stewardship",
            "band": "good",
            "name": "Ownership & stewardship",
            "note": null,
            "notes": [],
            "value": 74,
            "inputs": {
              "followers": 487,
              "owner_type": "Organization",
              "is_verified": null,
              "owner_login": "saezlab",
              "public_repos": 306,
              "account_age_days": 4254
            },
            "components": [
              {
                "key": "ownership_backing",
                "name": "Ownership backing",
                "detail": "organization-owned",
                "points": 30,
                "status": "met",
                "details": [
                  {
                    "code": "owner_organization",
                    "params": {}
                  }
                ],
                "max_points": 30
              },
              {
                "key": "verified_domain",
                "name": "Verified domain",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "owner_reach",
                "name": "Owner reach",
                "detail": "487 followers of saezlab",
                "points": 19.3,
                "status": "partial",
                "details": [
                  {
                    "code": "owner_followers",
                    "params": {
                      "count": 487,
                      "login": "saezlab"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "track_record",
                "name": "Track record",
                "detail": "306 public repos, account ~11 yr old",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "public_repos",
                    "params": {
                      "count": 306
                    }
                  },
                  {
                    "code": "account_age_years",
                    "params": {
                      "years": 11
                    }
                  }
                ],
                "max_points": 25
              }
            ]
          },
          {
            "key": "package_maintenance",
            "band": "excellent",
            "name": "Package maintenance",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "packages": [
                "liana"
              ],
              "ecosystems": "pypi",
              "any_deprecated": false,
              "min_days_since_publish": 5
            },
            "components": [
              {
                "key": "published_resolvable",
                "name": "Published & resolvable",
                "detail": "1 package(s) on pypi",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "packages_published",
                    "params": {
                      "count": 1,
                      "ecosystems": "pypi"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "publish_recency",
                "name": "Publish recency",
                "detail": "latest publish 5 days ago",
                "points": 35,
                "status": "met",
                "details": [
                  {
                    "code": "publish_recency",
                    "params": {
                      "days": 5
                    }
                  }
                ],
                "max_points": 35
              },
              {
                "key": "version_history",
                "name": "Version history",
                "detail": "29 published versions",
                "points": 20,
                "status": "met",
                "details": [
                  {
                    "code": "published_versions",
                    "params": {
                      "count": 29
                    }
                  }
                ],
                "max_points": 20
              },
              {
                "key": "not_deprecated",
                "name": "Not deprecated",
                "detail": "active, not deprecated or yanked",
                "points": 20,
                "status": "met",
                "details": [
                  {
                    "code": "package_not_deprecated",
                    "params": {}
                  }
                ],
                "max_points": 20
              }
            ]
          }
        ],
        "description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
      },
      {
        "key": "engineering",
        "band": "excellent",
        "name": "Engineering Quality",
        "value": 96,
        "weight": 0.2,
        "metrics": [
          {
            "key": "engineering_practices",
            "band": "excellent",
            "name": "Engineering practices",
            "note": null,
            "notes": [],
            "value": 94,
            "inputs": {
              "has_ci": true,
              "has_tests": true,
              "has_editorconfig": false,
              "has_linter_config": true,
              "has_precommit_config": true
            },
            "components": [
              {
                "key": "ci_workflows",
                "name": "CI workflows",
                "detail": "3 workflow(s)",
                "points": 24,
                "status": "met",
                "details": [
                  {
                    "code": "ci_workflows",
                    "params": {
                      "count": 3
                    }
                  }
                ],
                "max_points": 24
              },
              {
                "key": "tests_present",
                "name": "Tests present",
                "detail": null,
                "points": 24,
                "status": "met",
                "details": [],
                "max_points": 24
              },
              {
                "key": "linter_config",
                "name": "Linter config",
                "detail": null,
                "points": 16,
                "status": "met",
                "details": [],
                "max_points": 16
              },
              {
                "key": "pre_commit_hooks",
                "name": "Pre-commit hooks",
                "detail": null,
                "points": 9.6,
                "status": "met",
                "details": [],
                "max_points": 9.6
              },
              {
                "key": "editorconfig",
                "name": ".editorconfig",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.4
              },
              {
                "key": "openssf_scorecard_ci_tests",
                "name": "OpenSSF Scorecard: CI-Tests",
                "detail": "4 out of 4 merged PRs checked by a CI test -- score normalized to 10",
                "points": 20,
                "status": "met",
                "details": [],
                "max_points": 20
              }
            ]
          },
          {
            "key": "documentation",
            "band": "excellent",
            "name": "Documentation",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "topics": [
                "cell-cell-communication",
                "ligand-receptor",
                "python",
                "single-cell",
                "single-cell-rna-seq",
                "spatial",
                "spatialomics"
              ],
              "has_wiki": true,
              "homepage": "http://liana-py.readthedocs.io/",
              "has_readme": true,
              "has_docs_dir": true,
              "has_description": true
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 30,
                "status": "met",
                "details": [],
                "max_points": 30
              },
              {
                "key": "documentation_directory",
                "name": "Documentation directory",
                "detail": null,
                "points": 25,
                "status": "met",
                "details": [],
                "max_points": 25
              },
              {
                "key": "documentation_homepage_site",
                "name": "Documentation / homepage site",
                "detail": "http://liana-py.readthedocs.io/",
                "points": 15,
                "status": "met",
                "details": [],
                "max_points": 15
              },
              {
                "key": "repository_description",
                "name": "Repository description",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "topics",
                "name": "Topics",
                "detail": "7 topics",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "topics_count",
                    "params": {
                      "count": 7
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "wiki",
                "name": "Wiki",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
      },
      {
        "key": "security",
        "band": "moderate",
        "name": "Security",
        "value": 54,
        "weight": 0.16,
        "metrics": [
          {
            "key": "security_posture",
            "band": "at_risk",
            "name": "Security posture",
            "note": "Excluded from scoring (no data or not applicable): Branch-Protection, Signed-Releases. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "branch_protection",
                    "signed_releases"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 43,
            "inputs": {
              "source": "openssf_scorecard",
              "checks_evaluated": 16,
              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 2,
              "scorecard_aggregate": 4.3
            },
            "components": [
              {
                "key": "binary_artifacts",
                "name": "Binary-Artifacts",
                "detail": "no binaries found in the repo",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "ci_tests",
                "name": "CI-Tests",
                "detail": "4 out of 4 merged PRs checked by a CI test -- score normalized to 10",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "code_review",
                "name": "Code-Review",
                "detail": "Found 2/7 approved changesets -- score normalized to 2",
                "points": 1.5,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 15 contributing companies or organizations",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no dangerous workflow patterns detected",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "no update tool detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "30 commit(s) and 7 issue activity found in the last 90 days -- score normalized to 10",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow detected",
                "points": 5,
                "status": "met",
                "details": [],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
                "detail": "SAST tool is not run on all commits -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "security_policy",
                "name": "Security-Policy",
                "detail": "security policy file not detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "signed_releases",
                "name": "Signed-Releases",
                "detail": "no releases found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "detected GitHub workflow tokens with excessive permissions",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "41 existing vulnerabilities detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              }
            ]
          },
          {
            "key": "dependency_advisories",
            "band": "excellent",
            "name": "Dependency advisories",
            "note": "Excluded from scoring (no data or not applicable): Indirect dependencies free of known advisories, No advisories left outstanding. Remaining weights renormalized. Matched 204 resolved dependencies against OSV. This repository publishes no package the index resolves, so the repository dependency graph was assessed instead. That graph mixes development and test pins with shipped dependencies, so only the declared runtime dependencies are scored; transitive findings are reported as context and excluded from the score. Reachability is not analyzed.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "indirect_dependencies_free_of_known_advisories",
                    "no_advisories_left_outstanding"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              },
              {
                "code": "advisories_scope_repository",
                "params": {
                  "assessed": 204
                }
              },
              {
                "code": "advisories_repo_graph_caveat",
                "params": {}
              },
              {
                "code": "advisories_reachability",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "source": "osv",
              "advisories": 75,
              "affected_packages": 13,
              "assessed_packages": 204,
              "unassessed_packages": 0,
              "affected_by_severity": "critical 2, high 6, moderate 4, low 1",
              "direct_affected_packages": 0
            },
            "components": [
              {
                "key": "direct_dependencies_free_of_known_advisories",
                "name": "Direct dependencies free of known advisories",
                "detail": "no direct dependency carries a known advisory",
                "points": 35,
                "status": "met",
                "details": [
                  {
                    "code": "no_direct_advisories",
                    "params": {}
                  }
                ],
                "max_points": 35
              },
              {
                "key": "indirect_dependencies_free_of_known_advisories",
                "name": "Indirect dependencies free of known advisories",
                "detail": "transitive set not separable from development and test dependencies in this scope",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "advisories_scope_not_separable",
                    "params": {}
                  }
                ],
                "max_points": 25
              },
              {
                "key": "no_advisories_left_outstanding",
                "name": "No advisories left outstanding",
                "detail": "no advisory carries a publication date",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "advisories_no_publication_date",
                    "params": {}
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "malicious_dependencies",
            "band": "excellent",
            "name": "Malicious dependencies",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "source": "osv",
              "meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
              "packages": [],
              "red_flag": false,
              "assessed_packages": 204,
              "malicious_packages": 0,
              "direct_malicious_packages": 0,
              "withdrawn_malicious_packages": 0,
              "installable_malicious_packages": 0
            },
            "components": [
              {
                "key": "no_dependency_reported_as_a_malicious_package",
                "name": "No dependency reported as a malicious package",
                "detail": "no dependency is reported as a malicious package",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "no_malicious_dependencies",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          },
          {
            "key": "high_risk_jurisdiction_exposure",
            "band": "excellent",
            "name": "High-Risk Jurisdiction Exposure",
            "note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
            "notes": [
              {
                "code": "jurisdiction_evidence_limits",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "meaning": "self-published location evidence; not nationality or citizenship",
              "red_flag": false,
              "exposures": [],
              "policy_countries": [
                "Russia",
                "Iran",
                "North Korea"
              ],
              "review_only_matches": 0,
              "assessed_self_published_locations": 19
            },
            "components": [
              {
                "key": "policy_exposure_multiplier",
                "name": "Policy exposure multiplier",
                "detail": "no confirmed policy-scope location match",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "jurisdiction_no_match",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "at_risk",
        "name": "AI Readiness",
        "value": 38,
        "weight": 0,
        "metrics": [
          {
            "key": "ai_agent_context",
            "band": "critical",
            "name": "Agent context & guidance",
            "note": null,
            "notes": [],
            "value": 7,
            "inputs": {
              "has_llms_txt": false,
              "legible_history_share": 0.124,
              "agent_instruction_files": [],
              "agent_instruction_max_bytes": null
            },
            "components": [
              {
                "key": "agent_instructions",
                "name": "Agent instructions",
                "detail": "no CLAUDE.md / AGENTS.md / editor rules",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_instructions",
                    "params": {}
                  }
                ],
                "max_points": 45
              },
              {
                "key": "machine_readable_docs_llms_txt",
                "name": "Machine-readable docs (llms.txt)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "legible_commit_history",
                "name": "Legible commit history",
                "detail": "12 of 97 human commits state their intent (structured subject or explanatory body)",
                "points": 6.6,
                "status": "partial",
                "details": [
                  {
                    "code": "legible_history",
                    "params": {
                      "legible": 12,
                      "sampled": 97
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "ai_verify_loop",
            "band": "moderate",
            "name": "Verify loop (build / test / typecheck)",
            "note": null,
            "notes": [],
            "value": 53,
            "inputs": {
              "has_nix": false,
              "has_tests": true,
              "lockfiles": [
                "uv.lock"
              ],
              "has_dockerfile": false,
              "typed_language": false,
              "bootstrap_files": [],
              "has_devcontainer": false,
              "has_linter_config": true,
              "typecheck_configs": [],
              "agent_commit_share": 0.1,
              "toolchain_manifests": [],
              "dependency_bot_commit_share": 0
            },
            "components": [
              {
                "key": "one_command_bootstrap",
                "name": "One-command bootstrap",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 18
              },
              {
                "key": "automated_tests",
                "name": "Automated tests",
                "detail": null,
                "points": 22,
                "status": "met",
                "details": [],
                "max_points": 22
              },
              {
                "key": "lint_format_config",
                "name": "Lint / format config",
                "detail": null,
                "points": 11,
                "status": "met",
                "details": [],
                "max_points": 11
              },
              {
                "key": "static_type_checking",
                "name": "Static type checking",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
              },
              {
                "key": "reproducible_environment",
                "name": "Reproducible environment",
                "detail": "lockfile",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "lockfile"
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "demonstrated_agent_practice",
                "name": "Demonstrated agent practice",
                "detail": "10 of the last 100 commits agent-authored or agent-credited",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "agent_authored_commits",
                    "params": {
                      "count": 10,
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "automated_maintenance",
                "name": "Automated maintenance",
                "detail": "no automated dependency updates observed",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_dependency_automation",
                    "params": {}
                  }
                ],
                "max_points": 8
              },
              {
                "key": "openssf_scorecard_pinned_dependencies",
                "name": "OpenSSF Scorecard: Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "ai_code_legibility",
            "band": "moderate",
            "name": "Code legibility for models",
            "note": null,
            "notes": [],
            "value": 55,
            "inputs": {
              "primary_language": "Python",
              "largest_source_bytes": 30684,
              "source_files_sampled": 106,
              "oversized_source_files": 0
            },
            "components": [
              {
                "key": "type_checkable_code",
                "name": "Type-checkable code",
                "detail": "Python without a type-check config",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_typecheck_config_language",
                    "params": {
                      "language": "Python"
                    }
                  }
                ],
                "max_points": 45
              },
              {
                "key": "manageable_file_sizes",
                "name": "Manageable file sizes",
                "detail": "0/106 source files over 60KB",
                "points": 55,
                "status": "met",
                "details": [
                  {
                    "code": "oversized_source_files",
                    "params": {
                      "kb": 60,
                      "sampled": 106,
                      "oversized": 0
                    }
                  }
                ],
                "max_points": 55
              }
            ]
          },
          {
            "key": "ai_interfaces",
            "band": "at_risk",
            "name": "Machine-readable interfaces",
            "note": null,
            "notes": [],
            "value": 40,
            "inputs": {
              "example_dirs": [
                "notebooks"
              ],
              "has_mcp_signal": false,
              "api_schema_files": []
            },
            "components": [
              {
                "key": "api_schema_openapi_graphql_proto",
                "name": "API schema (OpenAPI/GraphQL/proto)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 40
              },
              {
                "key": "mcp_server",
                "name": "MCP server",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "runnable_examples",
                "name": "Runnable examples",
                "detail": "notebooks",
                "points": 40,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "notebooks"
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          }
        ],
        "description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
      }
    ],
    "metrics_version": "1.13.0"
  },
  "warnings": [
    "deps.dev does not index pypi:liana@1.8.1; advisories assessed against the repository dependency graph instead"
  ],
  "report_type": "repository",
  "generated_at": "2026-07-21T21:22:29.975173Z",
  "schema_version": "0.23.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/s/saezlab/liana-py.svg",
  "full_name": "saezlab/liana-py",
  "license_state": "standard",
  "license_spdx": "BSD-3-Clause"
}

评分是信号,而非担保。 评分反映的是 GitHub 上公开可见的实践——不是代码审计,也不是安全保证。

缺失数据将被剔除并重新归一化权重,绝不按零分计。方法论已版本化并公开:指标 v1.13.0、模式 v0.23.0—— 完整方法论 · 指标知识库.

单项结果在整体记录中的位置: 汇总统计PyPI.