原始 JSON 报告 机器可读
{
"data": {
"repo": {
"topics": [
"cell-cell-communication",
"ligand-receptor",
"python",
"single-cell",
"single-cell-rna-seq",
"spatial",
"spatialomics"
],
"is_fork": false,
"size_kb": 431552,
"has_wiki": true,
"homepage": "http://liana-py.readthedocs.io/",
"languages": {
"Python": 505951
},
"pushed_at": "2026-07-16T13:45:28Z",
"created_at": "2022-09-22T13:20:35Z",
"owner_type": "Organization",
"updated_at": "2026-07-16T13:44:03Z",
"description": "LIANA+: an all-in-one framework for cell-cell communication",
"is_archived": false,
"is_disabled": false,
"license_spdx": "BSD-3-Clause",
"default_branch": "main",
"license_spdx_raw": "BSD-3-Clause",
"primary_language": "Python",
"significant_languages": [
"Python"
]
},
"owner": {
"blog": "saezlab.org",
"name": "Saez Lab",
"type": "Organization",
"login": "saezlab",
"company": null,
"location": "Germany",
"followers": 487,
"avatar_url": "https://avatars.githubusercontent.com/u/9979042?v=4",
"created_at": "2014-11-27T16:46:34Z",
"is_verified": null,
"public_repos": 306,
"account_age_days": 4254
},
"license": {
"state": "standard",
"spdx_id": "BSD-3-Clause",
"raw_spdx": "BSD-3-Clause",
"file_present": true,
"scorecard_found": true,
"profile_has_license": true
},
"activity": {
"releases": [
{
"tag": "v1.8.1",
"kind": "patch",
"published_at": "2026-07-16T13:45:28Z"
},
{
"tag": "v1.8.0",
"kind": "minor",
"published_at": "2026-06-29T12:43:58Z"
},
{
"tag": "1.7.3",
"kind": "patch",
"published_at": "2026-05-26T16:53:26Z"
},
{
"tag": "1.7.1",
"kind": "patch",
"published_at": "2026-01-24T11:36:03Z"
},
{
"tag": "metalinksdb",
"kind": "other",
"published_at": "2026-01-24T10:40:50Z"
},
{
"tag": "v1.7.0",
"kind": "minor",
"published_at": "2026-01-11T09:39:14Z"
},
{
"tag": "1.6.1",
"kind": "patch",
"published_at": "2025-09-28T14:20:34Z"
},
{
"tag": "v1.6.0",
"kind": "minor",
"published_at": "2025-07-14T10:02:34Z"
},
{
"tag": "1.5.1",
"kind": "patch",
"published_at": "2025-02-13T17:58:20Z"
},
{
"tag": "v1.5.0",
"kind": "minor",
"published_at": "2025-01-17T17:50:28Z"
},
{
"tag": "1.4.0",
"kind": "minor",
"published_at": "2024-09-02T10:20:57Z"
},
{
"tag": "1.3.0",
"kind": "minor",
"published_at": "2024-07-18T11:49:07Z"
},
{
"tag": "1.2.1",
"kind": "patch",
"published_at": "2024-06-12T07:42:52Z"
},
{
"tag": "1.2.0",
"kind": "minor",
"published_at": "2024-05-24T18:30:58Z"
},
{
"tag": "1.1.0",
"kind": "minor",
"published_at": "2024-04-12T09:01:13Z"
},
{
"tag": "1.0.5",
"kind": "patch",
"published_at": "2024-03-14T06:34:11Z"
},
{
"tag": "1.0.4",
"kind": "patch",
"published_at": "2024-01-17T16:09:53Z"
},
{
"tag": "1.0.3",
"kind": "patch",
"published_at": "2023-11-10T18:52:01Z"
},
{
"tag": "1.0.2",
"kind": "patch",
"published_at": "2023-10-26T06:45:07Z"
},
{
"tag": "1.0.1",
"kind": "patch",
"published_at": "2023-10-01T21:49:48Z"
},
{
"tag": "1.0.0a1",
"kind": "other",
"published_at": "2023-09-06T09:35:42Z"
},
{
"tag": "1.0.0a0",
"kind": "other",
"published_at": "2023-07-27T10:28:59Z"
},
{
"tag": "0.1.9",
"kind": "patch",
"published_at": "2023-07-10T18:26:53Z"
},
{
"tag": "0.1.8",
"kind": "patch",
"published_at": "2023-06-06T12:20:40Z"
}
],
"recent_commits": [
{
"oid": "705bcf9dd9faa2257fee30e624a9690d0ddb932f",
"body": null,
"is_bot": false,
"headline": "add mofaflow to decision tree",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-07-16T13:31:48Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5f3886509c69b6185cb24de927986a12051958d5",
"body": null,
"is_bot": false,
"headline": "fix float64 leak",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-07-16T13:00:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8f52076efc1f92ba4bdf031b86bfc8f941ccd96d",
"body": null,
"is_bot": false,
"headline": "copy correctly; fix links; deterministic mofaflex",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-07-16T12:37:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "65e279a94bb10f1a8cd470666ee52f9fc33c9b18",
"body": "Release 1.8.1: LRIC/cross-PCF memory & perf refactor (#245), MistyData uns/obsm\npreservation (#242), expand_coordinates utility + MOFA-Flex tutorial (#238),\nand pandas<3 pin for rank_aggregate/by_sample compatibility (#244).\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
"is_bot": false,
"headline": "Bump version: 1.8.0 → 1.8.1",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-07-15T19:11:24Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "0296f50836a2a91064bd54ce6025b2d5af464d6f",
"body": "Keeps docs/notebooks/models/ (trained MOFA-Flex models) out of the repo.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
"is_bot": false,
"headline": "chore: ignore *.hdf5 model files",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-07-15T19:11:00Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "b55b2365e748e5e254ede6b8db130d51f964077e",
"body": "inflow_mofaflex.ipynb: re-executed with dpi_save=50 and a load-if-exists guard\non the (GPU-trained) model so the tutorial is reproducible; dissection now focuses\non Factor 4 (GABAergic-neuron enkephalin/opioid, striatal) and Factor 1 (FGF/ECM\ntrophic niche), with the biology narrative rewritten to match the fitted model.\n\nLRIC_tutorial.ipynb: re-executed to reflect the updated LRIC/cross-PCF numerics\nfrom #245.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
"is_bot": false,
"headline": "docs: rerun MOFA-Flex and LRIC tutorials",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-07-15T19:11:00Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "21e8af68102455235e7e689cdd88b257b7231acf",
"body": "From AtheerAS:fix/LRIC. Introduces prep_check_adata-based unified preprocessing,\nchunked (pair_chunk) sparse scale-matrix multiplication to bound peak memory,\nsparse_distance_matrix/searchsorted binning, and a .raw-subsetting correctness\nfix (updates test reference values). Removes _filter_by_min_cells/_spatial_pairs.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
"is_bot": false,
"headline": "Merge #245: LRIC/CrossPCF memory & performance refactor",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-07-15T17:22:20Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "6a89d7bb7d79f20e9a356023500de1ff2b6ea335",
"body": "#244a (AnnData `dtype=` removal in >=0.11) is already resolved in the pipeline.\n#244b (pandas 3.0 Copy-on-Write turns the chained `inplace` fillna on\n`lrs_to_keep` into a no-op, and string-typed columns coerce the internal\nNone-labelled score column to 'nan') breaks rank_aggregate consensus/by_sample.\nFull pandas-3.0 support is broader than this issue, so pin <3 for now.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
"is_bot": false,
"headline": "fix: pin pandas<3 pending pandas-3.0 support (#244)",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-07-15T17:16:45Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "f3a67d6725f5e8c7ed6337b1c366c50b007ab8c2",
"body": null,
"is_bot": false,
"headline": "change fig",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-07-15T16:07:30Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "725be83b2c4a1bfbb1a82de99a678290cb8815dc",
"body": null,
"is_bot": false,
"headline": "Fix LRIC performance and memory issues",
"author_name": "AtheerAS",
"author_login": "AtheerAS",
"committed_at": "2026-07-14T21:29:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "348f943e474077522e66e015a63603cd033c95c6",
"body": null,
"is_bot": false,
"headline": "extend",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-07-10T14:22:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1d50c7a8dfbc0a461c35fbf7b1803d082da56893",
"body": null,
"is_bot": false,
"headline": "adjust tuto",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-07-08T14:07:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "92346aeaa4929bb03a3c2fdf1cc482437fb0d94e",
"body": null,
"is_bot": false,
"headline": "adjust exand coords",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-07-08T12:20:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8dea8584b68670212e6a8b3c4ad3bc5cae1477ca",
"body": "…oordinates on a non-overlapping grid",
"is_bot": false,
"headline": "Add _expand_coordinates utility for laying out multi-sample spatial c…",
"author_name": "AtheerAS",
"author_login": "AtheerAS",
"committed_at": "2026-07-05T11:23:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0b9a9aa2c9cc53b9ef122efc4defa73667679a94",
"body": null,
"is_bot": false,
"headline": "Update notebook",
"author_name": "AtheerAS",
"author_login": "AtheerAS",
"committed_at": "2026-07-03T15:21:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a6ce2d12a244cf269a8fa43b0fb108992b077df9",
"body": null,
"is_bot": false,
"headline": "inflow - MOFAflex notebook & util",
"author_name": "AtheerAS",
"author_login": "AtheerAS",
"committed_at": "2026-07-02T21:59:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "18d574b9e3b6c1c436663ce8999b9931b442c294",
"body": null,
"is_bot": false,
"headline": "title fix",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-06-29T12:28:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9788e7f30c957f83128d119c1d8e48ddb9ba5c37",
"body": null,
"is_bot": false,
"headline": "improve diagram",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-06-29T12:20:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c64c4adaa4a196eb6f973ed33cc47cb2905d81f9",
"body": null,
"is_bot": false,
"headline": "Bump version: 1.7.3 → 1.8.0",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-06-29T12:14:24Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6cc62f72d73421bdabdec9d0d92152b937007ae7",
"body": "Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
"is_bot": false,
"headline": "docs: changelog for 1.8.0 (LRIC, cross-PCF, pyCrossTalkeR)",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-06-29T12:13:23Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "f193ba3ecad4cb435a957ef348820ea1f90fede7",
"body": null,
"is_bot": false,
"headline": "update tree and docs",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-06-29T12:09:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6be05952f7a205993d6a4757e65b04ee7ea52f71",
"body": null,
"is_bot": false,
"headline": "improve API + merge crosstalker",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-06-29T11:49:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "290a9148af032521e2aa51138a986ccb79af7477",
"body": "(cherry picked from commit 9da871ea8729a2511af1bb99fd5e422b8e8a05dd)",
"is_bot": false,
"headline": "fix version and from_liana",
"author_name": "jsnagai",
"author_login": "jsnagai",
"committed_at": "2026-06-29T11:36:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "40b8b4c64788c360782edf848752db0fdd24864f",
"body": null,
"is_bot": false,
"headline": "fix on decimal instability in weighted spearman",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-06-29T11:16:29Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "170c2264423618124dc9c0dbc69613f2d978e0a8",
"body": null,
"is_bot": false,
"headline": "add help plots",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-06-29T10:31:35Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5a1f0a1ed2ffc4ffc9a03ae5f34684a82d9b1ade",
"body": null,
"is_bot": false,
"headline": "expand definitions + acknowledge prior work",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-06-29T09:37:33Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "14d61e6a7c4a56caa1f225e657d93a90c3a475dc",
"body": null,
"is_bot": false,
"headline": "resolve linting etc",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-06-29T07:44:29Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "440206efd9a837f982b0fcb1170e785d9e8de98e",
"body": null,
"is_bot": false,
"headline": "first pass",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-06-29T07:13:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b0e8cb6c1eea73c0842192ea8da24875dac7b4a1",
"body": null,
"is_bot": false,
"headline": "remove np.log1p call from linear_transform",
"author_name": "AtheerAS",
"author_login": "AtheerAS",
"committed_at": "2026-06-25T18:07:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fb062e80b84101aa677e55565d8d0c7347735fcd",
"body": null,
"is_bot": false,
"headline": "Add overview figure",
"author_name": "AtheerAS",
"author_login": "AtheerAS",
"committed_at": "2026-06-25T17:45:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "908f1520a678a3673fdd30907388a4886cee8bfb",
"body": null,
"is_bot": false,
"headline": "Address PR review comments",
"author_name": "AtheerAS",
"author_login": "AtheerAS",
"committed_at": "2026-06-25T17:23:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "71999e6313516da370448128e636821e583c1d8d",
"body": null,
"is_bot": false,
"headline": "wPCF notebook & functions",
"author_name": "AtheerAS",
"author_login": "AtheerAS",
"committed_at": "2026-06-05T13:33:38Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "850d3b24558332d41cd3f8731d139223f609b63c",
"body": "Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>",
"is_bot": false,
"headline": "bump version to 1.7.3",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-05-26T16:48:38Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "7d61c033744f7b7b3a08231347eb1d9582e487a3",
"body": null,
"is_bot": false,
"headline": "update hcop call",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-05-26T16:23:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d776ba253a4ee382cbb2d9a0f4925bf12f522389",
"body": null,
"is_bot": false,
"headline": "strip unneeded signatures",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-05-26T16:15:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1e43c069b427f80d331fc37d8bc0c6036689c1c0",
"body": null,
"is_bot": false,
"headline": "make sure the notebook runs",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-05-14T08:59:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b0da6f5c9b72780150eedd6ef76f8c18ad310318",
"body": "- Add mypy type-checking note in Code-style section\n- Document the new build.yaml CI workflow (uv build + twine check)\n- Fix bump2version → bumpversion (aligns with pyproject.toml dev dep)\n- Update README CI badge URL: main.yml → test.yml (workflow rename)\n\nCo-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>",
"is_bot": false,
"headline": "docs: update contributing guide for mypy, build CI, and bumpversion",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-05-14T08:51:20Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "e2b49dc924207d1ee2c435cfc778cc1952f8d7da",
"body": "…build CI)\n\nResolves 6 merge conflicts with HEAD (v1.7.x spatial proximity features,\nGCS-based orthology, target_organism param). Fixes ruff/mypy pre-commit\nfailures introduced by the PR: Callable annotations, missing return\nstatements, var-annotated type hints, and structural type-ignore comments.\n\nCo-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>",
"is_bot": false,
"headline": "Merge PR #219: doc update (NumPy docstrings, type annotations, mypy, …",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-05-14T08:50:24Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "c011dfeb909a1c0a2043a8648b0f09dc6ff96be1",
"body": null,
"is_bot": false,
"headline": "metalinks sync",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-05-14T08:24:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e7617fe0a30e2eba1344bd0ea29a8db158fec039",
"body": "- Replace defunct EBI FTP URL with HGNC Google Cloud Storage bucket\n- Add target_organism parameter (default \"mouse\") to get_hcop_orthologs,\n supporting all 19 HCOP species\n- Update prior_knowledge.ipynb to use new target_organism API\n- Update CHANGELOG for 1.7.2\n\nCo-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>",
"is_bot": false,
"headline": "fix orthology: switch HCOP to GCS, add target_organism param",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-05-14T08:05:56Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "e0a50da4e034cd19590d8b36af18bd554e2423d7",
"body": null,
"is_bot": false,
"headline": "merge solution from decoupler",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-05-14T07:56:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "30a9859eb9d1b57be02e6f43b6be355632aa1722",
"body": null,
"is_bot": false,
"headline": "extend figs",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-05-14T07:31:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3ce3dcce473617be319797c83b8b6c153f3eb97d",
"body": null,
"is_bot": false,
"headline": "docs versions",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-24T11:44:47Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "276fc05d065006680940f1611e33aa9f04a683c4",
"body": null,
"is_bot": false,
"headline": "fix logo location",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-24T11:30:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "eb7cc85b4a3767b88d63b7ff72963e64e79b7728",
"body": null,
"is_bot": false,
"headline": "adjust link",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-24T11:25:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fb531d64c3edd97f78e8fde2ab38288381f77b5d",
"body": "Metalinks access",
"is_bot": false,
"headline": "Merge pull request #228 from saezlab/metalinks_access",
"author_name": "Daniel Dimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-24T11:23:23Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a41a3ba396acd5f5d98439abdbb95dc2d04ae6d5",
"body": null,
"is_bot": false,
"headline": "clarify tree",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-24T11:21:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "601a57b911e30ef671ea64ca9264631b3605487f",
"body": null,
"is_bot": false,
"headline": "test mermaid",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-24T11:16:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f31dcf40edf03db52e4bdb46ac0fda52a129c0a6",
"body": null,
"is_bot": false,
"headline": "test to decimal",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-24T11:08:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7c02c318b772a542e9180eec5ce54272921caa17",
"body": null,
"is_bot": false,
"headline": "adjust acc to scanpy version",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-24T10:56:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "70bf35c86028f9719f3fcd47e77d98153564a977",
"body": null,
"is_bot": false,
"headline": "Bump version: 1.7.0 → 1.7.1",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-24T10:44:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6ad8488ee541ff19fe746f8539af2aef77f9cc6b",
"body": null,
"is_bot": false,
"headline": "update to gh release",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-24T10:43:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "305ea037078103ae4b327a8bc6f9225e10b17bf8",
"body": null,
"is_bot": false,
"headline": "simplify",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-07T20:24:19Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "85e84b3052442d6654545de103ac952ef2fafd8c",
"body": null,
"is_bot": false,
"headline": "add more headers",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-07T20:06:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "25ff730f522801485dcbc70a337834c6ea58270f",
"body": null,
"is_bot": false,
"headline": "improve header formating",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-07T20:00:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "180c6d2b0d35b88afb1bacfdd8d6308deadb4497",
"body": "v1.7.0",
"is_bot": false,
"headline": "v1.7.0",
"author_name": "Daniel Dimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-07T19:50:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "59a3546682f228112932796490ecc3dc7abd2c24",
"body": null,
"is_bot": false,
"headline": "ensure metalinksdb gets properly downloaded",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-07T19:45:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "01381ba1006fdfc5676a14a15792d5d40af08de1",
"body": "…tion\n\nCo-authored-by: dbdimitrov <50865230+dbdimitrov@users.noreply.github.com>",
"is_bot": true,
"headline": "Revert groupby parameter change - '@label' is correct internal conven…",
"author_name": "copilot-swe-agent[bot]",
"author_login": "Copilot",
"committed_at": "2026-01-07T18:59:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5ab0b43b8946ebe0ea8edf03a6f39283f9db7671",
"body": "Co-authored-by: dbdimitrov <50865230+dbdimitrov@users.noreply.github.com>",
"is_bot": true,
"headline": "Address code review comments: fix formatting, typos, and unused imports",
"author_name": "copilot-swe-agent[bot]",
"author_login": "Copilot",
"committed_at": "2026-01-07T18:56:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f897876be47b7be8ec7253acdc52b7d5419c837d",
"body": null,
"is_bot": true,
"headline": "Initial plan",
"author_name": "copilot-swe-agent[bot]",
"author_login": "Copilot",
"committed_at": "2026-01-07T18:48:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7fe04a64e03dcf57f3e41736d91551ac953b9d77",
"body": null,
"is_bot": false,
"headline": "update dependencies",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-07T18:37:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d98539f6e7fa64c0f210c5c8912f340aba39ab3d",
"body": null,
"is_bot": false,
"headline": "resolve #220",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-07T18:31:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0b44e13bdc4866aa28641e3bfd543ec4a3c1b2f2",
"body": null,
"is_bot": false,
"headline": "add installation",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-07T14:57:12Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e546f35fb7c554503ab816d49d1330031264ff03",
"body": null,
"is_bot": false,
"headline": "add some plots",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-07T14:26:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cdbcbbc658665ae361b41bfc34a39e96116e750d",
"body": null,
"is_bot": false,
"headline": "update tutorial",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-07T10:56:47Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1066c1c5ca9e68d3f265073c9db64e915c03a73b",
"body": null,
"is_bot": false,
"headline": "remove wrong imports",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-07T08:38:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a18b1f64f375c6c0e045f9a4d82e577c65006b40",
"body": null,
"is_bot": false,
"headline": "add 3.13 to toml #216",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-07T08:24:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "50bea1c5b97dc5bfd468d08bd132da828143deed",
"body": null,
"is_bot": false,
"headline": "Bump version: 1.6.1 → 1.7.0",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-07T08:20:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "dab259fc5417a778e771ce0e4374dd86f36b24c0",
"body": null,
"is_bot": false,
"headline": "fix import issue",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2026-01-07T08:12:42Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "52216835c5b380c57ddadec9bba9ae4329116078",
"body": null,
"is_bot": false,
"headline": "update tests",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-12-19T12:28:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fe80ec95e50325af659f2df1727e9a98d46ecf2d",
"body": null,
"is_bot": false,
"headline": "Update inflow score",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-12-18T13:42:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "070683da9f76d3198b297ffa198b5f1db2969709",
"body": null,
"is_bot": false,
"headline": "add adata to mudata function",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-12-17T21:02:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "45a8fb7ab51d1776c8b4cf0b4dbc8a1b2624108a",
"body": null,
"is_bot": false,
"headline": "Update inflow notebook",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-12-17T20:31:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1773dfe2d0772005f1f562f6b65c5dd700092b6d",
"body": null,
"is_bot": false,
"headline": "Line wrapping and examples in `obsm_to_adata.py`",
"author_name": "Nicolas Palacio",
"author_login": "npalacioescat",
"committed_at": "2025-12-15T12:39:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e774b5262dd5b5087161484d5845ffbe389cee07",
"body": null,
"is_bot": false,
"headline": "Line wrap and examples in `quary_bandwidth.py`",
"author_name": "Nicolas Palacio",
"author_login": "npalacioescat",
"committed_at": "2025-12-09T13:44:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "33b79828880959bcc1c88bc3da35822944ba870c",
"body": null,
"is_bot": false,
"headline": "Line wrapping and examples in `spatial_neighbors.py`",
"author_name": "Nicolas Palacio",
"author_login": "npalacioescat",
"committed_at": "2025-12-09T13:08:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "dfcc59b2bfab1e5c4cdd26a7d2c1d12e4ad2b575",
"body": null,
"is_bot": false,
"headline": "Update inflow score notebook",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-12-05T15:52:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "dce5cb5f357ca0935acee8b4035c4d0219578d1a",
"body": null,
"is_bot": false,
"headline": "update compute specificity",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-12-05T13:30:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "998a5e8073036f29ffa76487dc164df73aabd35f",
"body": null,
"is_bot": false,
"headline": "add unittest for global spec",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-12-05T12:51:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "21d889ba207ace134c26d6f6b207e1859718f494",
"body": null,
"is_bot": false,
"headline": "changes to global spec",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-12-04T22:27:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bf4e27a696d8103d77f3e21e5e6166f2579e8e81",
"body": null,
"is_bot": false,
"headline": "del heatmap fun",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-12-04T16:28:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "21257b8ac05ee25cdd7ed41f1005f7c550991ca1",
"body": null,
"is_bot": false,
"headline": "Update global specificity function - omit loops",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-12-03T15:21:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1aa0d4092f4e254344a5d22ce0d1f3dfc1a01df7",
"body": null,
"is_bot": false,
"headline": "drop gini metrics",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-12-03T12:54:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "da11dd99847dffab154613265ccab92533354108",
"body": null,
"is_bot": false,
"headline": "Update inflow.var operations: gini",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-12-03T12:19:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2ba87d9ea40eb07188f674564b5b6e95c4413325",
"body": null,
"is_bot": false,
"headline": "add comment",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2025-12-03T08:18:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "47a4ed30c12ee6dac330441f74d748a780315cd8",
"body": null,
"is_bot": false,
"headline": "mask acc to filter",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2025-12-03T07:56:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f31e55b4836b4e96aee137b39e9332e6fa177207",
"body": null,
"is_bot": false,
"headline": "merge spatial weights",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2025-12-03T06:51:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ad98024cfe3fdc447407a7495ff54f1e99078b0f",
"body": null,
"is_bot": false,
"headline": "merge",
"author_name": "dbdimitrov",
"author_login": "dbdimitrov",
"committed_at": "2025-12-03T06:45:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b2882f8f7246d4bfd065d95cda1df040f51d9b64",
"body": null,
"is_bot": false,
"headline": "Update inflow-related functions",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-12-02T20:27:19Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9740b189a5d4644d4afedb1a4ea64b15dadf534a",
"body": null,
"is_bot": false,
"headline": "Inflow updates",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-12-02T18:26:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a4219bc6e13ed3e856ee02c15f0470ae8c424838",
"body": null,
"is_bot": false,
"headline": "Examples and line wrapping in `utils/transform.py`",
"author_name": "Nicolas Palacio",
"author_login": "npalacioescat",
"committed_at": "2025-12-02T12:10:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "69858ddf9ba9947b25b862320ec659b1dc35bbe4",
"body": null,
"is_bot": false,
"headline": "Line wrapping in `__init__.py`",
"author_name": "Nicolas Palacio",
"author_login": "npalacioescat",
"committed_at": "2025-12-02T11:59:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f53ebfae4ff42a3840372534baa9c9ae8c7e25ea",
"body": null,
"is_bot": false,
"headline": "Line wrapping for `_logging.py`",
"author_name": "Nicolas Palacio",
"author_login": "npalacioescat",
"committed_at": "2025-12-02T11:55:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d997f263ad5e9a9107af17e31878a9f3244f26bf",
"body": null,
"is_bot": false,
"headline": "unittest for global_specificity",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-12-02T11:25:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6d6401979c777b7889c157df862019e6a899bb53",
"body": null,
"is_bot": false,
"headline": "Add inflow_spatial unittest",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-12-02T11:15:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7c04f895ca4c5e8e7a179e02e45ca36e6889bf2b",
"body": null,
"is_bot": false,
"headline": "Update spatial_inflow plot function",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-12-01T23:29:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2ddcee85bb57663da53a7ffc71c1cfb3d767d2ca",
"body": "…tmap plot function",
"is_bot": false,
"headline": "Add unittest for heatmap, update global specificity function, and hea…",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-12-01T15:46:32Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "352dbbfcc7bf331071bbfce3fbb722928d177e5c",
"body": null,
"is_bot": false,
"headline": "Update functions",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-11-28T19:15:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b3b7abff667cb800609e202c047413f3352fad89",
"body": null,
"is_bot": false,
"headline": "Update inflow-related plots functions",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-11-28T18:47:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1347885c596bef8bb93826fc6cb36e9965ba582c",
"body": null,
"is_bot": false,
"headline": "Update inflow-related functions",
"author_name": "Atheer Alsayah",
"author_login": null,
"committed_at": "2025-11-27T20:42:25Z",
"body_truncated": false,
"is_coding_agent": false
}
],
"releases_count": 24,
"commits_last_year": 181,
"latest_release_at": "2026-07-16T13:45:28Z",
"latest_release_tag": "v1.8.1",
"releases_from_tags": false,
"days_since_last_push": 5,
"active_weeks_last_year": 22,
"days_since_latest_release": 5,
"mean_days_between_releases": 60.5
},
"community": {
"has_readme": true,
"has_license": true,
"has_description": true,
"has_contributing": true,
"health_percentage": 62,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"ecosystem": {
"packages": [
{
"name": "liana",
"exists": true,
"license": null,
"keywords": [
"Programming Language :: Python :: 3 :: Only",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3.13"
],
"ecosystem": "pypi",
"matches_repo": true,
"registry_url": "https://pypi.org/project/liana/",
"is_deprecated": false,
"latest_version": "1.8.1",
"repository_url": "https://github.com/saezlab/liana-py",
"versions_count": 29,
"total_downloads": null,
"dependents_count": null,
"deprecation_note": null,
"maintainers_count": null,
"monthly_downloads": null,
"first_published_at": "2022-11-15T15:47:33.742319Z",
"latest_published_at": "2026-07-16T13:46:03.585343Z",
"latest_version_yanked": null,
"days_since_latest_publish": 5
}
]
},
"popularity": {
"forks": 34,
"stars": 305,
"watchers": 1,
"fork_history": {
"days": [
{
"date": "2023-01-31",
"count": 1
},
{
"date": "2023-03-22",
"count": 1
},
{
"date": "2023-04-20",
"count": 1
},
{
"date": "2023-04-26",
"count": 1
},
{
"date": "2023-05-08",
"count": 1
},
{
"date": "2023-07-05",
"count": 1
},
{
"date": "2023-09-23",
"count": 1
},
{
"date": "2023-10-23",
"count": 1
},
{
"date": "2023-10-25",
"count": 1
},
{
"date": "2024-02-11",
"count": 1
},
{
"date": "2024-04-29",
"count": 1
},
{
"date": "2024-05-15",
"count": 1
},
{
"date": "2024-06-04",
"count": 2
},
{
"date": "2024-08-03",
"count": 1
},
{
"date": "2024-09-03",
"count": 2
},
{
"date": "2024-09-04",
"count": 1
},
{
"date": "2024-09-10",
"count": 1
},
{
"date": "2024-09-21",
"count": 1
},
{
"date": "2024-12-16",
"count": 1
},
{
"date": "2025-01-21",
"count": 1
},
{
"date": "2025-03-15",
"count": 1
},
{
"date": "2025-04-01",
"count": 1
},
{
"date": "2025-05-25",
"count": 1
},
{
"date": "2025-06-23",
"count": 1
},
{
"date": "2025-11-18",
"count": 1
},
{
"date": "2025-12-03",
"count": 1
},
{
"date": "2026-02-05",
"count": 1
},
{
"date": "2026-03-31",
"count": 1
},
{
"date": "2026-04-15",
"count": 1
},
{
"date": "2026-04-16",
"count": 1
},
{
"date": "2026-05-16",
"count": 1
},
{
"date": "2026-07-10",
"count": 1
}
],
"complete": true,
"collected": 34,
"total_forks": 34
},
"star_history": {
"days": [
{
"date": "2022-10-21",
"count": 2
},
{
"date": "2022-10-26",
"count": 3
},
{
"date": "2022-11-10",
"count": 1
},
{
"date": "2022-11-15",
"count": 2
},
{
"date": "2022-12-07",
"count": 1
},
{
"date": "2022-12-10",
"count": 1
},
{
"date": "2023-01-25",
"count": 1
},
{
"date": "2023-02-05",
"count": 1
},
{
"date": "2023-02-17",
"count": 1
},
{
"date": "2023-02-21",
"count": 1
},
{
"date": "2023-02-22",
"count": 1
},
{
"date": "2023-02-27",
"count": 1
},
{
"date": "2023-03-08",
"count": 1
},
{
"date": "2023-04-06",
"count": 1
},
{
"date": "2023-04-14",
"count": 1
},
{
"date": "2023-04-18",
"count": 1
},
{
"date": "2023-04-27",
"count": 1
},
{
"date": "2023-05-02",
"count": 3
},
{
"date": "2023-05-03",
"count": 1
},
{
"date": "2023-05-08",
"count": 2
},
{
"date": "2023-05-19",
"count": 1
},
{
"date": "2023-05-24",
"count": 2
},
{
"date": "2023-06-02",
"count": 1
},
{
"date": "2023-06-05",
"count": 1
},
{
"date": "2023-06-08",
"count": 1
},
{
"date": "2023-06-09",
"count": 1
},
{
"date": "2023-06-14",
"count": 1
},
{
"date": "2023-06-19",
"count": 1
},
{
"date": "2023-06-23",
"count": 1
},
{
"date": "2023-07-01",
"count": 1
},
{
"date": "2023-07-12",
"count": 1
},
{
"date": "2023-07-27",
"count": 2
},
{
"date": "2023-07-29",
"count": 1
},
{
"date": "2023-08-11",
"count": 1
},
{
"date": "2023-08-22",
"count": 2
},
{
"date": "2023-08-23",
"count": 7
},
{
"date": "2023-08-24",
"count": 1
},
{
"date": "2023-08-25",
"count": 2
},
{
"date": "2023-08-26",
"count": 1
},
{
"date": "2023-08-29",
"count": 1
},
{
"date": "2023-09-01",
"count": 1
},
{
"date": "2023-09-05",
"count": 1
},
{
"date": "2023-09-06",
"count": 1
},
{
"date": "2023-09-08",
"count": 1
},
{
"date": "2023-09-10",
"count": 1
},
{
"date": "2023-09-11",
"count": 1
},
{
"date": "2023-09-12",
"count": 1
},
{
"date": "2023-09-15",
"count": 1
},
{
"date": "2023-09-20",
"count": 2
},
{
"date": "2023-09-26",
"count": 1
},
{
"date": "2023-09-28",
"count": 2
},
{
"date": "2023-10-01",
"count": 1
},
{
"date": "2023-10-23",
"count": 1
},
{
"date": "2023-10-24",
"count": 1
},
{
"date": "2023-10-25",
"count": 1
},
{
"date": "2023-10-26",
"count": 1
},
{
"date": "2023-10-31",
"count": 1
},
{
"date": "2023-11-01",
"count": 1
},
{
"date": "2023-11-03",
"count": 1
},
{
"date": "2023-11-05",
"count": 1
},
{
"date": "2023-11-08",
"count": 1
},
{
"date": "2023-11-09",
"count": 1
},
{
"date": "2023-11-19",
"count": 1
},
{
"date": "2023-11-23",
"count": 1
},
{
"date": "2023-12-01",
"count": 1
},
{
"date": "2023-12-04",
"count": 1
},
{
"date": "2023-12-11",
"count": 1
},
{
"date": "2023-12-12",
"count": 1
},
{
"date": "2023-12-18",
"count": 2
},
{
"date": "2023-12-21",
"count": 1
},
{
"date": "2023-12-29",
"count": 1
},
{
"date": "2024-01-04",
"count": 1
},
{
"date": "2024-01-05",
"count": 1
},
{
"date": "2024-01-21",
"count": 1
},
{
"date": "2024-02-02",
"count": 1
},
{
"date": "2024-02-05",
"count": 1
},
{
"date": "2024-02-06",
"count": 2
},
{
"date": "2024-02-08",
"count": 2
},
{
"date": "2024-02-14",
"count": 1
},
{
"date": "2024-02-23",
"count": 1
},
{
"date": "2024-03-05",
"count": 1
},
{
"date": "2024-03-07",
"count": 2
},
{
"date": "2024-03-20",
"count": 1
},
{
"date": "2024-03-31",
"count": 1
},
{
"date": "2024-04-08",
"count": 1
},
{
"date": "2024-04-12",
"count": 1
},
{
"date": "2024-04-15",
"count": 1
},
{
"date": "2024-04-16",
"count": 1
},
{
"date": "2024-04-26",
"count": 1
},
{
"date": "2024-05-12",
"count": 1
},
{
"date": "2024-05-15",
"count": 1
},
{
"date": "2024-05-21",
"count": 1
},
{
"date": "2024-05-27",
"count": 1
},
{
"date": "2024-05-28",
"count": 1
},
{
"date": "2024-06-06",
"count": 1
},
{
"date": "2024-06-08",
"count": 1
},
{
"date": "2024-06-13",
"count": 1
},
{
"date": "2024-06-16",
"count": 1
},
{
"date": "2024-06-17",
"count": 1
},
{
"date": "2024-06-19",
"count": 1
},
{
"date": "2024-06-20",
"count": 1
},
{
"date": "2024-06-26",
"count": 1
},
{
"date": "2024-06-28",
"count": 1
},
{
"date": "2024-06-30",
"count": 2
},
{
"date": "2024-07-02",
"count": 1
},
{
"date": "2024-07-03",
"count": 2
},
{
"date": "2024-07-11",
"count": 1
},
{
"date": "2024-07-16",
"count": 1
},
{
"date": "2024-07-19",
"count": 1
},
{
"date": "2024-07-25",
"count": 1
},
{
"date": "2024-07-28",
"count": 1
},
{
"date": "2024-08-03",
"count": 1
},
{
"date": "2024-08-08",
"count": 1
},
{
"date": "2024-08-11",
"count": 1
},
{
"date": "2024-08-12",
"count": 1
},
{
"date": "2024-08-15",
"count": 1
},
{
"date": "2024-09-02",
"count": 1
},
{
"date": "2024-09-03",
"count": 3
},
{
"date": "2024-09-04",
"count": 2
},
{
"date": "2024-09-06",
"count": 1
},
{
"date": "2024-09-10",
"count": 1
},
{
"date": "2024-09-17",
"count": 1
},
{
"date": "2024-09-18",
"count": 2
},
{
"date": "2024-09-19",
"count": 1
},
{
"date": "2024-10-07",
"count": 1
},
{
"date": "2024-10-11",
"count": 2
},
{
"date": "2024-10-21",
"count": 1
},
{
"date": "2024-10-23",
"count": 1
},
{
"date": "2024-10-24",
"count": 1
},
{
"date": "2024-11-03",
"count": 1
},
{
"date": "2024-11-04",
"count": 1
},
{
"date": "2024-11-13",
"count": 1
},
{
"date": "2024-11-14",
"count": 1
},
{
"date": "2024-11-19",
"count": 1
},
{
"date": "2024-11-26",
"count": 2
},
{
"date": "2024-12-01",
"count": 1
},
{
"date": "2024-12-05",
"count": 1
},
{
"date": "2024-12-13",
"count": 1
},
{
"date": "2024-12-20",
"count": 1
},
{
"date": "2025-01-04",
"count": 1
},
{
"date": "2025-01-07",
"count": 1
},
{
"date": "2025-01-09",
"count": 1
},
{
"date": "2025-01-28",
"count": 1
},
{
"date": "2025-02-03",
"count": 1
},
{
"date": "2025-02-04",
"count": 1
},
{
"date": "2025-02-07",
"count": 1
},
{
"date": "2025-02-10",
"count": 1
},
{
"date": "2025-02-12",
"count": 1
},
{
"date": "2025-02-14",
"count": 1
},
{
"date": "2025-02-15",
"count": 1
},
{
"date": "2025-02-20",
"count": 2
},
{
"date": "2025-02-21",
"count": 1
},
{
"date": "2025-02-27",
"count": 1
},
{
"date": "2025-02-28",
"count": 1
},
{
"date": "2025-03-06",
"count": 1
},
{
"date": "2025-03-11",
"count": 1
},
{
"date": "2025-03-12",
"count": 1
},
{
"date": "2025-03-13",
"count": 1
},
{
"date": "2025-03-16",
"count": 1
},
{
"date": "2025-03-18",
"count": 2
},
{
"date": "2025-03-24",
"count": 1
},
{
"date": "2025-03-25",
"count": 1
},
{
"date": "2025-03-30",
"count": 1
},
{
"date": "2025-04-02",
"count": 1
},
{
"date": "2025-04-09",
"count": 1
},
{
"date": "2025-04-10",
"count": 1
},
{
"date": "2025-04-12",
"count": 1
},
{
"date": "2025-04-19",
"count": 1
},
{
"date": "2025-05-04",
"count": 1
},
{
"date": "2025-05-20",
"count": 1
},
{
"date": "2025-05-25",
"count": 1
},
{
"date": "2025-05-29",
"count": 1
},
{
"date": "2025-05-31",
"count": 1
},
{
"date": "2025-06-02",
"count": 1
},
{
"date": "2025-06-03",
"count": 1
},
{
"date": "2025-06-04",
"count": 1
},
{
"date": "2025-06-05",
"count": 1
},
{
"date": "2025-06-10",
"count": 2
},
{
"date": "2025-06-12",
"count": 1
},
{
"date": "2025-06-20",
"count": 1
},
{
"date": "2025-06-21",
"count": 1
},
{
"date": "2025-06-23",
"count": 1
},
{
"date": "2025-07-10",
"count": 1
},
{
"date": "2025-07-15",
"count": 2
},
{
"date": "2025-07-17",
"count": 1
},
{
"date": "2025-08-05",
"count": 1
},
{
"date": "2025-08-14",
"count": 1
},
{
"date": "2025-08-15",
"count": 1
},
{
"date": "2025-08-18",
"count": 1
},
{
"date": "2025-09-04",
"count": 1
},
{
"date": "2025-09-12",
"count": 3
},
{
"date": "2025-09-18",
"count": 1
},
{
"date": "2025-09-21",
"count": 1
},
{
"date": "2025-09-23",
"count": 1
},
{
"date": "2025-09-24",
"count": 1
},
{
"date": "2025-09-25",
"count": 1
},
{
"date": "2025-09-30",
"count": 2
},
{
"date": "2025-10-09",
"count": 1
},
{
"date": "2025-10-15",
"count": 1
},
{
"date": "2025-10-16",
"count": 1
},
{
"date": "2025-10-20",
"count": 1
},
{
"date": "2025-10-23",
"count": 1
},
{
"date": "2025-11-07",
"count": 1
},
{
"date": "2025-11-13",
"count": 1
},
{
"date": "2025-11-20",
"count": 1
},
{
"date": "2025-11-24",
"count": 1
},
{
"date": "2025-12-01",
"count": 2
},
{
"date": "2025-12-03",
"count": 2
},
{
"date": "2025-12-09",
"count": 2
},
{
"date": "2025-12-16",
"count": 1
},
{
"date": "2025-12-18",
"count": 1
},
{
"date": "2025-12-27",
"count": 1
},
{
"date": "2025-12-31",
"count": 1
},
{
"date": "2026-01-04",
"count": 1
},
{
"date": "2026-01-05",
"count": 1
},
{
"date": "2026-01-09",
"count": 1
},
{
"date": "2026-01-12",
"count": 1
},
{
"date": "2026-01-17",
"count": 1
},
{
"date": "2026-01-19",
"count": 1
},
{
"date": "2026-01-23",
"count": 1
},
{
"date": "2026-01-30",
"count": 1
},
{
"date": "2026-02-02",
"count": 1
},
{
"date": "2026-02-03",
"count": 1
},
{
"date": "2026-02-08",
"count": 1
},
{
"date": "2026-02-10",
"count": 1
},
{
"date": "2026-02-12",
"count": 1
},
{
"date": "2026-02-13",
"count": 1
},
{
"date": "2026-02-23",
"count": 1
},
{
"date": "2026-02-24",
"count": 1
},
{
"date": "2026-03-03",
"count": 1
},
{
"date": "2026-03-10",
"count": 1
},
{
"date": "2026-03-12",
"count": 1
},
{
"date": "2026-03-16",
"count": 1
},
{
"date": "2026-03-17",
"count": 1
},
{
"date": "2026-03-19",
"count": 1
},
{
"date": "2026-03-21",
"count": 1
},
{
"date": "2026-03-26",
"count": 1
},
{
"date": "2026-03-29",
"count": 1
},
{
"date": "2026-04-06",
"count": 1
},
{
"date": "2026-04-12",
"count": 1
},
{
"date": "2026-04-15",
"count": 1
},
{
"date": "2026-05-05",
"count": 1
},
{
"date": "2026-05-08",
"count": 1
},
{
"date": "2026-05-12",
"count": 1
},
{
"date": "2026-05-16",
"count": 1
},
{
"date": "2026-05-18",
"count": 2
},
{
"date": "2026-05-27",
"count": 1
},
{
"date": "2026-05-28",
"count": 1
},
{
"date": "2026-05-30",
"count": 1
},
{
"date": "2026-06-02",
"count": 1
},
{
"date": "2026-06-03",
"count": 1
},
{
"date": "2026-06-16",
"count": 2
},
{
"date": "2026-06-20",
"count": 1
},
{
"date": "2026-06-24",
"count": 2
},
{
"date": "2026-06-27",
"count": 2
},
{
"date": "2026-06-29",
"count": 1
},
{
"date": "2026-07-05",
"count": 1
},
{
"date": "2026-07-09",
"count": 2
},
{
"date": "2026-07-10",
"count": 1
}
],
"complete": true,
"collected": 305,
"total_stars": 305
},
"open_issues_and_prs": 29
},
"ai_readiness": {
"has_nix": false,
"example_dirs": [
"notebooks"
],
"has_llms_txt": false,
"has_dockerfile": false,
"has_mcp_signal": false,
"bootstrap_files": [],
"api_schema_files": [],
"has_devcontainer": false,
"typecheck_configs": [],
"toolchain_manifests": [],
"largest_source_bytes": 30684,
"source_files_sampled": 106,
"oversized_source_files": 0,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"dependencies": {
"manifests": [
"pyproject.toml"
],
"advisories": {
"error": null,
"scope": "repository_graph",
"source": "osv",
"findings": [
{
"name": "cryptography",
"direct": false,
"version": "46.0.3",
"severity": "critical",
"ecosystem": "pypi",
"cvss_score": 9.8,
"advisory_ids": [
"GHSA-537c-gmf6-5ccf",
"GHSA-m959-cc7f-wv43",
"GHSA-p423-j2cm-9vmq",
"GHSA-r6ph-v2qm-q3c2",
"PYSEC-2026-2141",
"PYSEC-2026-35",
"PYSEC-2026-36"
],
"fixed_version": "48.0.1",
"advisory_count": 7,
"oldest_advisory_days": 160
},
{
"name": "pillow",
"direct": false,
"version": "12.1.0",
"severity": "critical",
"ecosystem": "pypi",
"cvss_score": 9.1,
"advisory_ids": [
"GHSA-45hq-cxwh-f6vc",
"GHSA-4x4j-2g7c-83w6",
"GHSA-5x94-69rx-g8h2",
"GHSA-5xmw-vc9v-4wf2",
"GHSA-62p4-gmf7-7g93",
"GHSA-6r8x-57c9-28j4",
"GHSA-8v84-f9pq-wr9x",
"GHSA-9hw9-ch79-4vh6",
"GHSA-cfh3-3jmp-rvhc",
"GHSA-fj7v-r99m-22gq"
],
"fixed_version": "12.3.0",
"advisory_count": 33,
"oldest_advisory_days": 160
},
{
"name": "click",
"direct": false,
"version": "8.3.1",
"severity": "high",
"ecosystem": "pypi",
"cvss_score": 7.2,
"advisory_ids": [
"PYSEC-2026-2132"
],
"fixed_version": "8.3.3",
"advisory_count": 1,
"oldest_advisory_days": 82
},
{
"name": "protobuf",
"direct": false,
"version": "6.33.4",
"severity": "high",
"ecosystem": "pypi",
"cvss_score": 7.5,
"advisory_ids": [
"GHSA-7gcm-g887-7qv7",
"PYSEC-2026-1805"
],
"fixed_version": "6.33.5",
"advisory_count": 2,
"oldest_advisory_days": 179
},
{
"name": "pyarrow",
"direct": false,
"version": "23.0.0",
"severity": "high",
"ecosystem": "pypi",
"cvss_score": 7,
"advisory_ids": [
"GHSA-rgxp-2hwp-jwgg",
"PYSEC-2026-113"
],
"fixed_version": "23.0.1",
"advisory_count": 2,
"oldest_advisory_days": 154
},
{
"name": "soupsieve",
"direct": false,
"version": "2.8.3",
"severity": "high",
"ecosystem": "pypi",
"cvss_score": 7.5,
"advisory_ids": [
"GHSA-2wc2-fm75-p42x",
"GHSA-836r-79rf-4m37",
"PYSEC-2026-3071",
"PYSEC-2026-3072"
],
"fixed_version": "2.8.4",
"advisory_count": 4,
"oldest_advisory_days": 12
},
{
"name": "tornado",
"direct": false,
"version": "6.5.4",
"severity": "high",
"ecosystem": "pypi",
"cvss_score": 7.7,
"advisory_ids": [
"GHSA-3x9g-8vmp-wqvf",
"GHSA-78cv-mqj4-43f7",
"GHSA-cx3h-4qpv-8hc9",
"GHSA-fqwm-6jpj-5wxc",
"GHSA-mgf9-4vpg-hj56",
"GHSA-pw6j-qg29-8w7f",
"GHSA-qjxf-f2mg-c6mc",
"PYSEC-2026-140",
"PYSEC-2026-2287",
"PYSEC-2026-3387"
],
"fixed_version": "6.5.7",
"advisory_count": 12,
"oldest_advisory_days": 132
},
{
"name": "urllib3",
"direct": false,
"version": "2.6.3",
"severity": "high",
"ecosystem": "pypi",
"cvss_score": 7.5,
"advisory_ids": [
"GHSA-mf9v-mfxr-j63j",
"GHSA-qccp-gfcp-xxvc",
"PYSEC-2026-141",
"PYSEC-2026-142"
],
"fixed_version": "2.7.0",
"advisory_count": 4,
"oldest_advisory_days": 71
},
{
"name": "idna",
"direct": false,
"version": "3.11",
"severity": "moderate",
"ecosystem": "pypi",
"cvss_score": 5.3,
"advisory_ids": [
"GHSA-65pc-fj4g-8rjx",
"PYSEC-2026-215"
],
"fixed_version": "3.15",
"advisory_count": 2,
"oldest_advisory_days": 63
},
{
"name": "pytest",
"direct": false,
"version": "9.0.2",
"severity": "moderate",
"ecosystem": "pypi",
"cvss_score": 6.8,
"advisory_ids": [
"GHSA-6w46-j5rx-g56g",
"PYSEC-2026-1845"
],
"fixed_version": "9.0.3",
"advisory_count": 2,
"oldest_advisory_days": 180
},
{
"name": "requests",
"direct": false,
"version": "2.32.5",
"severity": "moderate",
"ecosystem": "pypi",
"cvss_score": 5.5,
"advisory_ids": [
"GHSA-gc5v-m9x4-r6x2",
"PYSEC-2026-2275"
],
"fixed_version": "2.33.0",
"advisory_count": 2,
"oldest_advisory_days": 118
},
{
"name": "setuptools",
"direct": false,
"version": "80.10.1",
"severity": "moderate",
"ecosystem": "pypi",
"cvss_score": 6.1,
"advisory_ids": [
"GHSA-h35f-9h28-mq5c",
"PYSEC-2026-3447"
],
"fixed_version": "83.0.0",
"advisory_count": 2,
"oldest_advisory_days": 13
},
{
"name": "pygments",
"direct": false,
"version": "2.19.2",
"severity": "low",
"ecosystem": "pypi",
"cvss_score": 3.3,
"advisory_ids": [
"GHSA-5239-wwwm-4pmq",
"PYSEC-2026-2987"
],
"fixed_version": "2.20.0",
"advisory_count": 2,
"oldest_advisory_days": 121
}
],
"collected": true,
"truncated": false,
"by_severity": {
"low": 1,
"high": 6,
"critical": 2,
"moderate": 4
},
"advisory_count": 75,
"affected_count": 13,
"assessed_count": 204,
"assessed_package": null,
"unassessed_count": 0,
"direct_affected_count": 0
},
"ecosystems": [
"pypi"
],
"dependencies": [
{
"name": "anndata",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">=0.7.4"
},
{
"name": "mudata",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "scanpy",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "numba",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "tqdm",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">=4.0"
},
{
"name": "docrep",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">=0.3.1"
},
{
"name": "plotnine",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">=0.10.1"
},
{
"name": "session-info2",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "pandas",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": "<3"
}
],
"all_dependencies": {
"error": null,
"source": "github-sbom",
"packages": [
{
"name": "anndata",
"direct": true,
"version": "0.11.4",
"ecosystem": "pypi"
},
{
"name": "anndata",
"direct": true,
"version": "0.12.7",
"ecosystem": "pypi"
},
{
"name": "docrep",
"direct": true,
"version": "0.3.2",
"ecosystem": "pypi"
},
{
"name": "mudata",
"direct": true,
"version": "0.3.2",
"ecosystem": "pypi"
},
{
"name": "numba",
"direct": true,
"version": "0.63.1",
"ecosystem": "pypi"
},
{
"name": "pandas",
"direct": true,
"version": "2.3.3",
"ecosystem": "pypi"
},
{
"name": "plotnine",
"direct": true,
"version": "0.15.2",
"ecosystem": "pypi"
},
{
"name": "scanpy",
"direct": true,
"version": "1.11.5",
"ecosystem": "pypi"
},
{
"name": "scanpy",
"direct": true,
"version": "1.12",
"ecosystem": "pypi"
},
{
"name": "session-info2",
"direct": true,
"version": "0.3",
"ecosystem": "pypi"
},
{
"name": "tqdm",
"direct": true,
"version": "4.67.1",
"ecosystem": "pypi"
},
{
"name": "accessible-pygments",
"direct": false,
"version": "0.0.5",
"ecosystem": "pypi"
},
{
"name": "adjusttext",
"direct": false,
"version": "1.3.0",
"ecosystem": "pypi"
},
{
"name": "alabaster",
"direct": false,
"version": "1.0.0",
"ecosystem": "pypi"
},
{
"name": "appnope",
"direct": false,
"version": "0.1.4",
"ecosystem": "pypi"
},
{
"name": "array-api-compat",
"direct": false,
"version": "1.13.0",
"ecosystem": "pypi"
},
{
"name": "asttokens",
"direct": false,
"version": "3.0.1",
"ecosystem": "pypi"
},
{
"name": "attrs",
"direct": false,
"version": "25.4.0",
"ecosystem": "pypi"
},
{
"name": "babel",
"direct": false,
"version": "2.17.0",
"ecosystem": "pypi"
},
{
"name": "backports-tarfile",
"direct": false,
"version": "1.2.0",
"ecosystem": "pypi"
},
{
"name": "beautifulsoup4",
"direct": false,
"version": "4.14.3",
"ecosystem": "pypi"
},
{
"name": "bump2version",
"direct": false,
"version": "1.0.1",
"ecosystem": "pypi"
},
{
"name": "bumpversion",
"direct": false,
"version": "0.6.0",
"ecosystem": "pypi"
},
{
"name": "cell2cell",
"direct": false,
"version": "0.8.4",
"ecosystem": "pypi"
},
{
"name": "certifi",
"direct": false,
"version": "2026.1.4",
"ecosystem": "pypi"
},
{
"name": "cffi",
"direct": false,
"version": "2.0.0",
"ecosystem": "pypi"
},
{
"name": "cfgv",
"direct": false,
"version": "3.5.0",
"ecosystem": "pypi"
},
{
"name": "charset-normalizer",
"direct": false,
"version": "3.4.4",
"ecosystem": "pypi"
},
{
"name": "click",
"direct": false,
"version": "8.3.1",
"ecosystem": "pypi"
},
{
"name": "colorama",
"direct": false,
"version": "0.4.6",
"ecosystem": "pypi"
},
{
"name": "comm",
"direct": false,
"version": "0.2.3",
"ecosystem": "pypi"
},
{
"name": "contourpy",
"direct": false,
"version": "1.3.2",
"ecosystem": "pypi"
},
{
"name": "contourpy",
"direct": false,
"version": "1.3.3",
"ecosystem": "pypi"
},
{
"name": "corneto",
"direct": false,
"version": "0.9.1a6",
"ecosystem": "pypi"
},
{
"name": "coverage",
"direct": false,
"version": "7.13.1",
"ecosystem": "pypi"
},
{
"name": "cryptography",
"direct": false,
"version": "46.0.3",
"ecosystem": "pypi"
},
{
"name": "cvxpy-base",
"direct": false,
"version": "1.7.5",
"ecosystem": "pypi"
},
{
"name": "cycler",
"direct": false,
"version": "0.12.1",
"ecosystem": "pypi"
},
{
"name": "debugpy",
"direct": false,
"version": "1.8.19",
"ecosystem": "pypi"
},
{
"name": "decorator",
"direct": false,
"version": "5.2.1",
"ecosystem": "pypi"
},
{
"name": "decoupler",
"direct": false,
"version": "2.1.4",
"ecosystem": "pypi"
},
{
"name": "distlib",
"direct": false,
"version": "0.4.0",
"ecosystem": "pypi"
},
{
"name": "docutils",
"direct": false,
"version": "0.21.2",
"ecosystem": "pypi"
},
{
"name": "donfig",
"direct": false,
"version": "0.8.1.post1",
"ecosystem": "pypi"
},
{
"name": "et-xmlfile",
"direct": false,
"version": "2.0.0",
"ecosystem": "pypi"
},
{
"name": "exceptiongroup",
"direct": false,
"version": "1.3.1",
"ecosystem": "pypi"
},
{
"name": "executing",
"direct": false,
"version": "2.2.1",
"ecosystem": "pypi"
},
{
"name": "fast-array-utils",
"direct": false,
"version": "1.3.1",
"ecosystem": "pypi"
},
{
"name": "fastjsonschema",
"direct": false,
"version": "2.21.2",
"ecosystem": "pypi"
},
{
"name": "filelock",
"direct": false,
"version": "3.20.3",
"ecosystem": "pypi"
},
{
"name": "fonttools",
"direct": false,
"version": "4.61.1",
"ecosystem": "pypi"
},
{
"name": "formulaic",
"direct": false,
"version": "1.2.1",
"ecosystem": "pypi"
},
{
"name": "formulaic-contrasts",
"direct": false,
"version": "1.0.0",
"ecosystem": "pypi"
},
{
"name": "google-crc32c",
"direct": false,
"version": "1.8.0",
"ecosystem": "pypi"
},
{
"name": "greenlet",
"direct": false,
"version": "3.3.1",
"ecosystem": "pypi"
},
{
"name": "gseapy",
"direct": false,
"version": "1.1.11",
"ecosystem": "pypi"
},
{
"name": "h5py",
"direct": false,
"version": "3.15.1",
"ecosystem": "pypi"
},
{
"name": "highspy",
"direct": false,
"version": "1.12.0",
"ecosystem": "pypi"
},
{
"name": "id",
"direct": false,
"version": "1.5.0",
"ecosystem": "pypi"
},
{
"name": "identify",
"direct": false,
"version": "2.6.16",
"ecosystem": "pypi"
},
{
"name": "idna",
"direct": false,
"version": "3.11",
"ecosystem": "pypi"
},
{
"name": "imagesize",
"direct": false,
"version": "1.4.1",
"ecosystem": "pypi"
},
{
"name": "importlib-metadata",
"direct": false,
"version": "8.7.1",
"ecosystem": "pypi"
},
{
"name": "inflect",
"direct": false,
"version": "7.5.0",
"ecosystem": "pypi"
},
{
"name": "iniconfig",
"direct": false,
"version": "2.3.0",
"ecosystem": "pypi"
},
{
"name": "interface-meta",
"direct": false,
"version": "1.3.0",
"ecosystem": "pypi"
},
{
"name": "ipykernel",
"direct": false,
"version": "7.1.0",
"ecosystem": "pypi"
},
{
"name": "ipython",
"direct": false,
"version": "8.38.0",
"ecosystem": "pypi"
},
{
"name": "ipython",
"direct": false,
"version": "9.9.0",
"ecosystem": "pypi"
},
{
"name": "ipython-pygments-lexers",
"direct": false,
"version": "1.1.1",
"ecosystem": "pypi"
},
{
"name": "jaraco-classes",
"direct": false,
"version": "3.4.0",
"ecosystem": "pypi"
},
{
"name": "jaraco-context",
"direct": false,
"version": "6.1.0",
"ecosystem": "pypi"
},
{
"name": "jaraco-functools",
"direct": false,
"version": "4.4.0",
"ecosystem": "pypi"
},
{
"name": "jedi",
"direct": false,
"version": "0.19.2",
"ecosystem": "pypi"
},
{
"name": "jeepney",
"direct": false,
"version": "0.9.0",
"ecosystem": "pypi"
},
{
"name": "jinja2",
"direct": false,
"version": "3.1.6",
"ecosystem": "pypi"
},
{
"name": "joblib",
"direct": false,
"version": "1.5.3",
"ecosystem": "pypi"
},
{
"name": "jsonschema",
"direct": false,
"version": "4.26.0",
"ecosystem": "pypi"
},
{
"name": "jsonschema-specifications",
"direct": false,
"version": "2025.9.1",
"ecosystem": "pypi"
},
{
"name": "jupyter-cache",
"direct": false,
"version": "1.0.1",
"ecosystem": "pypi"
},
{
"name": "jupyter-client",
"direct": false,
"version": "8.8.0",
"ecosystem": "pypi"
},
{
"name": "jupyter-core",
"direct": false,
"version": "5.9.1",
"ecosystem": "pypi"
},
{
"name": "keyring",
"direct": false,
"version": "25.7.0",
"ecosystem": "pypi"
},
{
"name": "kiwisolver",
"direct": false,
"version": "1.4.9",
"ecosystem": "pypi"
},
{
"name": "kneed",
"direct": false,
"version": "0.8.5",
"ecosystem": "pypi"
},
{
"name": "latexcodec",
"direct": false,
"version": "3.0.1",
"ecosystem": "pypi"
},
{
"name": "legacy-api-wrap",
"direct": false,
"version": "1.5",
"ecosystem": "pypi"
},
{
"name": "legendkit",
"direct": false,
"version": "0.3.6",
"ecosystem": "pypi"
},
{
"name": "liana",
"direct": false,
"version": "1.7.1",
"ecosystem": "pypi"
},
{
"name": "llvmlite",
"direct": false,
"version": "0.46.0",
"ecosystem": "pypi"
},
{
"name": "markdown-it-py",
"direct": false,
"version": "3.0.0",
"ecosystem": "pypi"
},
{
"name": "markdown-it-py",
"direct": false,
"version": "4.0.0",
"ecosystem": "pypi"
},
{
"name": "markupsafe",
"direct": false,
"version": "3.0.3",
"ecosystem": "pypi"
},
{
"name": "marsilea",
"direct": false,
"version": "0.5.7",
"ecosystem": "pypi"
},
{
"name": "matplotlib",
"direct": false,
"version": "3.10.8",
"ecosystem": "pypi"
},
{
"name": "matplotlib-inline",
"direct": false,
"version": "0.2.1",
"ecosystem": "pypi"
},
{
"name": "mdit-py-plugins",
"direct": false,
"version": "0.5.0",
"ecosystem": "pypi"
},
{
"name": "mdurl",
"direct": false,
"version": "0.1.2",
"ecosystem": "pypi"
},
{
"name": "mizani",
"direct": false,
"version": "0.14.3",
"ecosystem": "pypi"
},
{
"name": "mofapy2",
"direct": false,
"version": "0.7.3",
"ecosystem": "pypi"
},
{
"name": "mofax",
"direct": false,
"version": "0.3.7",
"ecosystem": "pypi"
},
{
"name": "more-itertools",
"direct": false,
"version": "10.8.0",
"ecosystem": "pypi"
},
{
"name": "muon",
"direct": false,
"version": "0.1.7",
"ecosystem": "pypi"
},
{
"name": "myst-nb",
"direct": false,
"version": "1.3.0",
"ecosystem": "pypi"
},
{
"name": "myst-parser",
"direct": false,
"version": "4.0.1",
"ecosystem": "pypi"
},
{
"name": "myst-parser",
"direct": false,
"version": "5.0.0",
"ecosystem": "pypi"
},
{
"name": "narwhals",
"direct": false,
"version": "2.15.0",
"ecosystem": "pypi"
},
{
"name": "natsort",
"direct": false,
"version": "8.4.0",
"ecosystem": "pypi"
},
{
"name": "nbclient",
"direct": false,
"version": "0.10.4",
"ecosystem": "pypi"
},
{
"name": "nbformat",
"direct": false,
"version": "5.10.4",
"ecosystem": "pypi"
},
{
"name": "nest-asyncio",
"direct": false,
"version": "1.6.0",
"ecosystem": "pypi"
},
{
"name": "networkx",
"direct": false,
"version": "3.4.2",
"ecosystem": "pypi"
},
{
"name": "networkx",
"direct": false,
"version": "3.6.1",
"ecosystem": "pypi"
},
{
"name": "nh3",
"direct": false,
"version": "0.3.2",
"ecosystem": "pypi"
},
{
"name": "nodeenv",
"direct": false,
"version": "1.10.0",
"ecosystem": "pypi"
},
{
"name": "numcodecs",
"direct": false,
"version": "0.16.5",
"ecosystem": "pypi"
},
{
"name": "numpy",
"direct": false,
"version": "2.2.6",
"ecosystem": "pypi"
},
{
"name": "numpy",
"direct": false,
"version": "2.3.5",
"ecosystem": "pypi"
},
{
"name": "omnipath",
"direct": false,
"version": "1.0.12",
"ecosystem": "pypi"
},
{
"name": "openpyxl",
"direct": false,
"version": "3.1.5",
"ecosystem": "pypi"
},
{
"name": "packaging",
"direct": false,
"version": "26.0",
"ecosystem": "pypi"
},
{
"name": "parso",
"direct": false,
"version": "0.8.5",
"ecosystem": "pypi"
},
{
"name": "patsy",
"direct": false,
"version": "1.0.2",
"ecosystem": "pypi"
},
{
"name": "pexpect",
"direct": false,
"version": "4.9.0",
"ecosystem": "pypi"
},
{
"name": "pillow",
"direct": false,
"version": "12.1.0",
"ecosystem": "pypi"
},
{
"name": "platformdirs",
"direct": false,
"version": "4.5.1",
"ecosystem": "pypi"
},
{
"name": "pluggy",
"direct": false,
"version": "1.6.0",
"ecosystem": "pypi"
},
{
"name": "pre-commit",
"direct": false,
"version": "4.5.1",
"ecosystem": "pypi"
},
{
"name": "prompt-toolkit",
"direct": false,
"version": "3.0.52",
"ecosystem": "pypi"
},
{
"name": "protobuf",
"direct": false,
"version": "6.33.4",
"ecosystem": "pypi"
},
{
"name": "psutil",
"direct": false,
"version": "7.2.1",
"ecosystem": "pypi"
},
{
"name": "ptyprocess",
"direct": false,
"version": "0.7.0",
"ecosystem": "pypi"
},
{
"name": "pure-eval",
"direct": false,
"version": "0.2.3",
"ecosystem": "pypi"
},
{
"name": "pyarrow",
"direct": false,
"version": "23.0.0",
"ecosystem": "pypi"
},
{
"name": "pybtex",
"direct": false,
"version": "0.25.1",
"ecosystem": "pypi"
},
{
"name": "pybtex-docutils",
"direct": false,
"version": "1.0.3",
"ecosystem": "pypi"
},
{
"name": "pycparser",
"direct": false,
"version": "3.0",
"ecosystem": "pypi"
},
{
"name": "pydata-sphinx-theme",
"direct": false,
"version": "0.15.4",
"ecosystem": "pypi"
},
{
"name": "pydeseq2",
"direct": false,
"version": "0.5.2",
"ecosystem": "pypi"
},
{
"name": "pydeseq2",
"direct": false,
"version": "0.5.4",
"ecosystem": "pypi"
},
{
"name": "pygments",
"direct": false,
"version": "2.19.2",
"ecosystem": "pypi"
},
{
"name": "pynndescent",
"direct": false,
"version": "0.6.0",
"ecosystem": "pypi"
},
{
"name": "pyparsing",
"direct": false,
"version": "3.3.2",
"ecosystem": "pypi"
},
{
"name": "pyscipopt",
"direct": false,
"version": "5.7.1",
"ecosystem": "pypi"
},
{
"name": "pytest",
"direct": false,
"version": "9.0.2",
"ecosystem": "pypi"
},
{
"name": "python-dateutil",
"direct": false,
"version": "2.9.0.post0",
"ecosystem": "pypi"
},
{
"name": "pytz",
"direct": false,
"version": "2025.2",
"ecosystem": "pypi"
},
{
"name": "pywin32-ctypes",
"direct": false,
"version": "0.2.3",
"ecosystem": "pypi"
},
{
"name": "pyyaml",
"direct": false,
"version": "6.0.3",
"ecosystem": "pypi"
},
{
"name": "pyzmq",
"direct": false,
"version": "27.1.0",
"ecosystem": "pypi"
},
{
"name": "readme-renderer",
"direct": false,
"version": "44.0",
"ecosystem": "pypi"
},
{
"name": "referencing",
"direct": false,
"version": "0.37.0",
"ecosystem": "pypi"
},
{
"name": "requests",
"direct": false,
"version": "2.32.5",
"ecosystem": "pypi"
},
{
"name": "requests-toolbelt",
"direct": false,
"version": "1.0.0",
"ecosystem": "pypi"
},
{
"name": "rfc3986",
"direct": false,
"version": "2.0.0",
"ecosystem": "pypi"
},
{
"name": "rich",
"direct": false,
"version": "14.2.0",
"ecosystem": "pypi"
},
{
"name": "rpds-py",
"direct": false,
"version": "0.30.0",
"ecosystem": "pypi"
},
{
"name": "scikit-learn",
"direct": false,
"version": "1.7.2",
"ecosystem": "pypi"
},
{
"name": "scikit-learn",
"direct": false,
"version": "1.8.0",
"ecosystem": "pypi"
},
{
"name": "scipy",
"direct": false,
"version": "1.15.3",
"ecosystem": "pypi"
},
{
"name": "scipy",
"direct": false,
"version": "1.17.0",
"ecosystem": "pypi"
},
{
"name": "seaborn",
"direct": false,
"version": "0.13.2",
"ecosystem": "pypi"
},
{
"name": "secretstorage",
"direct": false,
"version": "3.5.0",
"ecosystem": "pypi"
},
{
"name": "session-info",
"direct": false,
"version": "1.0.1",
"ecosystem": "pypi"
},
{
"name": "setuptools",
"direct": false,
"version": "80.10.1",
"ecosystem": "pypi"
},
{
"name": "six",
"direct": false,
"version": "1.17.0",
"ecosystem": "pypi"
},
{
"name": "snowballstemmer",
"direct": false,
"version": "3.0.1",
"ecosystem": "pypi"
},
{
"name": "soupsieve",
"direct": false,
"version": "2.8.3",
"ecosystem": "pypi"
},
{
"name": "sphinx",
"direct": false,
"version": "8.1.3",
"ecosystem": "pypi"
},
{
"name": "sphinx-autodoc-typehints",
"direct": false,
"version": "3.0.1",
"ecosystem": "pypi"
},
{
"name": "sphinx-book-theme",
"direct": false,
"version": "1.1.4",
"ecosystem": "pypi"
},
{
"name": "sphinx-copybutton",
"direct": false,
"version": "0.5.2",
"ecosystem": "pypi"
},
{
"name": "sphinx-tabs",
"direct": false,
"version": "3.4.7",
"ecosystem": "pypi"
},
{
"name": "sphinxcontrib-applehelp",
"direct": false,
"version": "2.0.0",
"ecosystem": "pypi"
},
{
"name": "sphinxcontrib-bibtex",
"direct": false,
"version": "2.6.5",
"ecosystem": "pypi"
},
{
"name": "sphinxcontrib-devhelp",
"direct": false,
"version": "2.0.0",
"ecosystem": "pypi"
},
{
"name": "sphinxcontrib-htmlhelp",
"direct": false,
"version": "2.1.0",
"ecosystem": "pypi"
},
{
"name": "sphinxcontrib-jsmath",
"direct": false,
"version": "1.0.1",
"ecosystem": "pypi"
},
{
"name": "sphinxcontrib-qthelp",
"direct": false,
"version": "2.0.0",
"ecosystem": "pypi"
},
{
"name": "sphinxcontrib-serializinghtml",
"direct": false,
"version": "2.0.0",
"ecosystem": "pypi"
},
{
"name": "sphinxext-opengraph",
"direct": false,
"version": "0.13.0",
"ecosystem": "pypi"
},
{
"name": "sqlalchemy",
"direct": false,
"version": "2.0.46",
"ecosystem": "pypi"
},
{
"name": "stack-data",
"direct": false,
"version": "0.6.3",
"ecosystem": "pypi"
},
{
"name": "statannotations",
"direct": false,
"version": "0.7.2",
"ecosystem": "pypi"
},
{
"name": "statsmodels",
"direct": false,
"version": "0.14.6",
"ecosystem": "pypi"
},
{
"name": "stdlib-list",
"direct": false,
"version": "0.12.0",
"ecosystem": "pypi"
},
{
"name": "tabulate",
"direct": false,
"version": "0.9.0",
"ecosystem": "pypi"
},
{
"name": "tensorly",
"direct": false,
"version": "0.9.0",
"ecosystem": "pypi"
},
{
"name": "threadpoolctl",
"direct": false,
"version": "3.6.0",
"ecosystem": "pypi"
},
{
"name": "tomli",
"direct": false,
"version": "2.4.0",
"ecosystem": "pypi"
},
{
"name": "tornado",
"direct": false,
"version": "6.5.4",
"ecosystem": "pypi"
},
{
"name": "traitlets",
"direct": false,
"version": "5.14.3",
"ecosystem": "pypi"
},
{
"name": "twine",
"direct": false,
"version": "6.2.0",
"ecosystem": "pypi"
},
{
"name": "typeguard",
"direct": false,
"version": "4.4.4",
"ecosystem": "pypi"
},
{
"name": "typing-extensions",
"direct": false,
"version": "4.15.0",
"ecosystem": "pypi"
},
{
"name": "tzdata",
"direct": false,
"version": "2025.3",
"ecosystem": "pypi"
},
{
"name": "umap-learn",
"direct": false,
"version": "0.5.11",
"ecosystem": "pypi"
},
{
"name": "urllib3",
"direct": false,
"version": "2.6.3",
"ecosystem": "pypi"
},
{
"name": "virtualenv",
"direct": false,
"version": "20.36.1",
"ecosystem": "pypi"
},
{
"name": "wcwidth",
"direct": false,
"version": "0.3.2",
"ecosystem": "pypi"
},
{
"name": "wrapt",
"direct": false,
"version": "2.0.1",
"ecosystem": "pypi"
},
{
"name": "xlrd",
"direct": false,
"version": "2.0.2",
"ecosystem": "pypi"
},
{
"name": "zarr",
"direct": false,
"version": "3.1.5",
"ecosystem": "pypi"
},
{
"name": "zipp",
"direct": false,
"version": "3.23.0",
"ecosystem": "pypi"
}
],
"collected": true,
"truncated": false,
"total_count": 204,
"direct_count": 11,
"indirect_count": 193
}
},
"maintainership": {
"issues": {
"open_prs": 2,
"merged_prs": 46,
"open_issues": 27,
"closed_ratio": 0.85,
"closed_issues": 153,
"closed_unmerged_prs": 18
},
"bus_factor": 1,
"bot_contributors": 1,
"top_contributors": [
{
"type": "User",
"login": "dbdimitrov",
"commits": 180,
"avatar_url": "https://avatars.githubusercontent.com/u/50865230?v=4"
},
{
"type": "User",
"login": "npalacioescat",
"commits": 61,
"avatar_url": "https://avatars.githubusercontent.com/u/22887412?v=4"
},
{
"type": "User",
"login": "pablormier",
"commits": 10,
"avatar_url": "https://avatars.githubusercontent.com/u/1433810?v=4"
},
{
"type": "User",
"login": "AtheerAS",
"commits": 8,
"avatar_url": "https://avatars.githubusercontent.com/u/89348482?v=4"
},
{
"type": "User",
"login": "robinfallegger",
"commits": 7,
"avatar_url": "https://avatars.githubusercontent.com/u/10638014?v=4"
},
{
"type": "User",
"login": "demian1",
"commits": 7,
"avatar_url": "https://avatars.githubusercontent.com/u/186915569?v=4"
},
{
"type": "User",
"login": "fbnrst",
"commits": 6,
"avatar_url": "https://avatars.githubusercontent.com/u/7300030?v=4"
},
{
"type": "User",
"login": "PauBadiaM",
"commits": 6,
"avatar_url": "https://avatars.githubusercontent.com/u/44896790?v=4"
},
{
"type": "User",
"login": "psl-schaefer",
"commits": 3,
"avatar_url": "https://avatars.githubusercontent.com/u/62442385?v=4"
},
{
"type": "User",
"login": "deeenes",
"commits": 2,
"avatar_url": "https://avatars.githubusercontent.com/u/2679889?v=4"
}
],
"contributors_sampled": 16,
"top_contributor_share": 0.608
},
"quality_signals": {
"has_ci": true,
"has_tests": true,
"ci_workflows": [
"build.yaml",
"release.yaml",
"test.yml"
],
"has_docs_dir": true,
"linter_configs": [],
"has_editorconfig": false,
"has_linter_config": true,
"has_precommit_config": true
},
"security_signals": {
"lockfiles": [
"uv.lock"
],
"scorecard": {
"checks": [
{
"name": "Binary-Artifacts",
"score": 10,
"reason": "no binaries found in the repo",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
},
{
"name": "Branch-Protection",
"score": null,
"reason": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
},
{
"name": "CI-Tests",
"score": 10,
"reason": "4 out of 4 merged PRs checked by a CI test -- score normalized to 10",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
},
{
"name": "CII-Best-Practices",
"score": 0,
"reason": "no effort to earn an OpenSSF best practices badge detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
},
{
"name": "Code-Review",
"score": 2,
"reason": "Found 2/7 approved changesets -- score normalized to 2",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
},
{
"name": "Contributors",
"score": 10,
"reason": "project has 15 contributing companies or organizations",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
},
{
"name": "Dangerous-Workflow",
"score": 10,
"reason": "no dangerous workflow patterns detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
},
{
"name": "Dependency-Update-Tool",
"score": 0,
"reason": "no update tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
},
{
"name": "Fuzzing",
"score": 0,
"reason": "project is not fuzzed",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
},
{
"name": "License",
"score": 10,
"reason": "license file detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
},
{
"name": "Maintained",
"score": 10,
"reason": "30 commit(s) and 7 issue activity found in the last 90 days -- score normalized to 10",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
},
{
"name": "Packaging",
"score": 10,
"reason": "packaging workflow detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
},
{
"name": "Pinned-Dependencies",
"score": 0,
"reason": "dependency not pinned by hash detected -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
},
{
"name": "SAST",
"score": 0,
"reason": "SAST tool is not run on all commits -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
},
{
"name": "Security-Policy",
"score": 0,
"reason": "security policy file not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
},
{
"name": "Signed-Releases",
"score": null,
"reason": "no releases found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
},
{
"name": "Token-Permissions",
"score": 0,
"reason": "detected GitHub workflow tokens with excessive permissions",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
},
{
"name": "Vulnerabilities",
"score": 0,
"reason": "41 existing vulnerabilities detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
}
],
"commit": "705bcf9dd9faa2257fee30e624a9690d0ddb932f",
"ran_at": "2026-07-21T21:22:03Z",
"aggregate_score": 4.3,
"scorecard_version": "v5.5.0"
},
"has_codeql_workflow": false,
"has_security_policy": false,
"has_dependabot_config": false
}
},
"config": {
"disabled_metrics": [],
"disabled_categories": [],
"disabled_components": {}
},
"source": {
"url": "https://github.com/saezlab/liana-py",
"host": "github.com",
"name": "liana-py",
"owner": "saezlab"
},
"metrics": {
"overall": {
"key": "overall",
"band": "good",
"name": "Overall health",
"note": null,
"notes": [],
"value": 74,
"inputs": {
"security": 54,
"vitality": 84,
"community": 61,
"governance": 68,
"engineering": 96
},
"components": []
},
"categories": [
{
"key": "vitality",
"band": "good",
"name": "Vitality",
"value": 84,
"weight": 0.22,
"metrics": [
{
"key": "development_activity",
"band": "good",
"name": "Development activity",
"note": null,
"notes": [],
"value": 79,
"inputs": {
"commits_last_year": 181,
"human_commit_share": 0.97,
"days_since_last_push": 5,
"active_weeks_last_year": 22
},
"components": [
{
"key": "push_recency",
"name": "Push recency",
"detail": "last push 5 days ago",
"points": 36,
"status": "met",
"details": [
{
"code": "push_recency",
"params": {
"days": 5
}
}
],
"max_points": 36
},
{
"key": "commit_cadence",
"name": "Commit cadence",
"detail": "22/52 weeks with commits",
"points": 15.2,
"status": "partial",
"details": [
{
"code": "commit_cadence_weeks",
"params": {
"weeks": 22
}
}
],
"max_points": 36
},
{
"key": "commit_volume",
"name": "Commit volume",
"detail": "181 commits in the last year",
"points": 18,
"status": "met",
"details": [
{
"code": "commits_last_year",
"params": {
"count": 181
}
}
],
"max_points": 18
},
{
"key": "openssf_scorecard_maintained",
"name": "OpenSSF Scorecard: Maintained",
"detail": "30 commit(s) and 7 issue activity found in the last 90 days -- score normalized to 10",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "release_discipline",
"band": "excellent",
"name": "Release discipline",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 92,
"inputs": {
"releases_count": 24,
"latest_release_tag": "v1.8.1",
"releases_from_tags": false,
"days_since_latest_release": 5,
"mean_days_between_releases": 60.5
},
"components": [
{
"key": "ships_releases",
"name": "Ships releases",
"detail": "24 releases published",
"points": 27,
"status": "met",
"details": [
{
"code": "releases_published",
"params": {
"count": 24
}
}
],
"max_points": 27
},
{
"key": "release_recency",
"name": "Release recency",
"detail": "latest release 5 days ago",
"points": 36,
"status": "met",
"details": [
{
"code": "release_recency",
"params": {
"days": 5
}
}
],
"max_points": 36
},
{
"key": "release_cadence",
"name": "Release cadence",
"detail": "a release every ~60.5 days",
"points": 19.8,
"status": "partial",
"details": [
{
"code": "release_cadence",
"params": {
"gap": 60.5
}
}
],
"max_points": 27
},
{
"key": "openssf_scorecard_signed_releases",
"name": "OpenSSF Scorecard: Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
}
]
},
{
"key": "abandonment",
"band": "excellent",
"name": "Abandonment",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"cap": null,
"state": "maintained",
"guards": [],
"signals": [],
"red_flag": false,
"multiplier_pct": 100,
"declared_reason": null,
"unverified_reason": null,
"unanswered_open_prs": null,
"unanswered_open_issues": null,
"days_since_last_merged_pr": null,
"days_since_last_human_commit": 5,
"days_since_last_human_commit_is_floor": false
},
"components": [
{
"key": "project_is_still_maintained",
"name": "Project is still maintained",
"detail": "last human commit 5 days ago",
"points": 100,
"status": "met",
"details": [
{
"code": "abandonment_maintained",
"params": {
"days": 5
}
}
],
"max_points": 100
}
]
}
],
"description": "Is the project alive — is code being written and are releases shipping?"
},
{
"key": "community",
"band": "moderate",
"name": "Community & Adoption",
"value": 61,
"weight": 0.18,
"metrics": [
{
"key": "popularity",
"band": "moderate",
"name": "Popularity & adoption",
"note": null,
"notes": [],
"value": 53,
"inputs": {
"forks": 34,
"stars": 305,
"watchers": 1,
"growth_state": "organic",
"growth_factor_pct": 100
},
"components": [
{
"key": "stars",
"name": "Stars",
"detail": "305 stars",
"points": 40.3,
"status": "partial",
"details": [
{
"code": "stars",
"params": {
"count": 305
}
}
],
"max_points": 60
},
{
"key": "forks",
"name": "Forks",
"detail": "34 forks",
"points": 12.7,
"status": "partial",
"details": [
{
"code": "forks",
"params": {
"count": 34
}
}
],
"max_points": 25
},
{
"key": "watchers",
"name": "Watchers",
"detail": "1 watchers",
"points": 0,
"status": "missed",
"details": [
{
"code": "watchers",
"params": {
"count": 1
}
}
],
"max_points": 15
}
]
},
{
"key": "community_health",
"band": "good",
"name": "Community health",
"note": null,
"notes": [],
"value": 70,
"inputs": {
"has_readme": true,
"has_license": true,
"has_contributing": true,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 22.5,
"status": "met",
"details": [],
"max_points": 22.5
},
{
"key": "license",
"name": "License",
"detail": "recognized license (BSD-3-Clause)",
"points": 22.5,
"status": "met",
"details": [
{
"code": "license_standard",
"params": {}
},
{
"code": "license_spdx",
"params": {
"spdx": "BSD-3-Clause"
}
}
],
"max_points": 22.5
},
{
"key": "contributing_guide",
"name": "CONTRIBUTING guide",
"detail": null,
"points": 18,
"status": "met",
"details": [],
"max_points": 18
},
{
"key": "code_of_conduct",
"name": "Code of conduct",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 13.5
},
{
"key": "issue_template",
"name": "Issue template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.2
},
{
"key": "pr_template",
"name": "PR template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.3
}
]
}
],
"description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
},
{
"key": "governance",
"band": "moderate",
"name": "Sustainability & Governance",
"value": 68,
"weight": 0.24,
"metrics": [
{
"key": "maintainer_resilience",
"band": "at_risk",
"name": "Maintainer resilience (bus factor)",
"note": null,
"notes": [],
"value": 41,
"inputs": {
"bus_factor": 1,
"contributors_sampled": 16,
"top_contributor_share": 0.608
},
"components": [
{
"key": "bus_factor",
"name": "Bus factor",
"detail": "1 contributor(s) cover half of all commits",
"points": 9,
"status": "partial",
"details": [
{
"code": "bus_factor",
"params": {
"count": 1
}
}
],
"max_points": 54
},
{
"key": "commit_distribution",
"name": "Commit distribution",
"detail": "top contributor authored 61% of commits",
"points": 8.8,
"status": "partial",
"details": [
{
"code": "top_contributor_share",
"params": {
"share": 61
}
}
],
"max_points": 22.5
},
{
"key": "contributor_breadth",
"name": "Contributor breadth",
"detail": "16 contributors",
"points": 13.5,
"status": "met",
"details": [
{
"code": "contributors_sampled",
"params": {
"count": 16
}
}
],
"max_points": 13.5
},
{
"key": "openssf_scorecard_contributors",
"name": "OpenSSF Scorecard: Contributors",
"detail": "project has 15 contributing companies or organizations",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "good",
"name": "Issue & PR responsiveness",
"note": null,
"notes": [],
"value": 70,
"inputs": {
"merged_prs": 46,
"open_issues": 27,
"closed_issues": 153,
"issue_closed_ratio": 0.85,
"closed_unmerged_prs": 18
},
"components": [
{
"key": "issue_resolution",
"name": "Issue resolution",
"detail": "85% of issues closed",
"points": 39.7,
"status": "partial",
"details": [
{
"code": "issues_closed_share",
"params": {
"share": 85
}
}
],
"max_points": 46.75
},
{
"key": "pr_acceptance",
"name": "PR acceptance",
"detail": "46/64 decided PRs merged",
"points": 27.5,
"status": "partial",
"details": [
{
"code": "decided_prs_merged",
"params": {
"merged": 46,
"decided": 64
}
}
],
"max_points": 38.25
},
{
"key": "openssf_scorecard_code_review",
"name": "OpenSSF Scorecard: Code-Review",
"detail": "Found 2/7 approved changesets -- score normalized to 2",
"points": 3,
"status": "partial",
"details": [],
"max_points": 15
}
]
},
{
"key": "stewardship",
"band": "good",
"name": "Ownership & stewardship",
"note": null,
"notes": [],
"value": 74,
"inputs": {
"followers": 487,
"owner_type": "Organization",
"is_verified": null,
"owner_login": "saezlab",
"public_repos": 306,
"account_age_days": 4254
},
"components": [
{
"key": "ownership_backing",
"name": "Ownership backing",
"detail": "organization-owned",
"points": 30,
"status": "met",
"details": [
{
"code": "owner_organization",
"params": {}
}
],
"max_points": 30
},
{
"key": "verified_domain",
"name": "Verified domain",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "owner_reach",
"name": "Owner reach",
"detail": "487 followers of saezlab",
"points": 19.3,
"status": "partial",
"details": [
{
"code": "owner_followers",
"params": {
"count": 487,
"login": "saezlab"
}
}
],
"max_points": 25
},
{
"key": "track_record",
"name": "Track record",
"detail": "306 public repos, account ~11 yr old",
"points": 25,
"status": "met",
"details": [
{
"code": "public_repos",
"params": {
"count": 306
}
},
{
"code": "account_age_years",
"params": {
"years": 11
}
}
],
"max_points": 25
}
]
},
{
"key": "package_maintenance",
"band": "excellent",
"name": "Package maintenance",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"packages": [
"liana"
],
"ecosystems": "pypi",
"any_deprecated": false,
"min_days_since_publish": 5
},
"components": [
{
"key": "published_resolvable",
"name": "Published & resolvable",
"detail": "1 package(s) on pypi",
"points": 25,
"status": "met",
"details": [
{
"code": "packages_published",
"params": {
"count": 1,
"ecosystems": "pypi"
}
}
],
"max_points": 25
},
{
"key": "publish_recency",
"name": "Publish recency",
"detail": "latest publish 5 days ago",
"points": 35,
"status": "met",
"details": [
{
"code": "publish_recency",
"params": {
"days": 5
}
}
],
"max_points": 35
},
{
"key": "version_history",
"name": "Version history",
"detail": "29 published versions",
"points": 20,
"status": "met",
"details": [
{
"code": "published_versions",
"params": {
"count": 29
}
}
],
"max_points": 20
},
{
"key": "not_deprecated",
"name": "Not deprecated",
"detail": "active, not deprecated or yanked",
"points": 20,
"status": "met",
"details": [
{
"code": "package_not_deprecated",
"params": {}
}
],
"max_points": 20
}
]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "excellent",
"name": "Engineering Quality",
"value": 96,
"weight": 0.2,
"metrics": [
{
"key": "engineering_practices",
"band": "excellent",
"name": "Engineering practices",
"note": null,
"notes": [],
"value": 94,
"inputs": {
"has_ci": true,
"has_tests": true,
"has_editorconfig": false,
"has_linter_config": true,
"has_precommit_config": true
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": "3 workflow(s)",
"points": 24,
"status": "met",
"details": [
{
"code": "ci_workflows",
"params": {
"count": 3
}
}
],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 24,
"status": "met",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": null,
"points": 16,
"status": "met",
"details": [],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 9.6,
"status": "met",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "4 out of 4 merged PRs checked by a CI test -- score normalized to 10",
"points": 20,
"status": "met",
"details": [],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "excellent",
"name": "Documentation",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"topics": [
"cell-cell-communication",
"ligand-receptor",
"python",
"single-cell",
"single-cell-rna-seq",
"spatial",
"spatialomics"
],
"has_wiki": true,
"homepage": "http://liana-py.readthedocs.io/",
"has_readme": true,
"has_docs_dir": true,
"has_description": true
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 30,
"status": "met",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 25,
"status": "met",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": "http://liana-py.readthedocs.io/",
"points": 15,
"status": "met",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": "7 topics",
"points": 10,
"status": "met",
"details": [
{
"code": "topics_count",
"params": {
"count": 7
}
}
],
"max_points": 10
},
{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "moderate",
"name": "Security",
"value": 54,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "at_risk",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): Branch-Protection, Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"branch_protection",
"signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 43,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 16,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 2,
"scorecard_aggregate": 4.3
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "4 out of 4 merged PRs checked by a CI test -- score normalized to 10",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 2/7 approved changesets -- score normalized to 2",
"points": 1.5,
"status": "partial",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 15 contributing companies or organizations",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no dangerous workflow patterns detected",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "no update tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "30 commit(s) and 7 issue activity found in the last 90 days -- score normalized to 10",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow detected",
"points": 5,
"status": "met",
"details": [],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "SAST tool is not run on all commits -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "detected GitHub workflow tokens with excessive permissions",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "41 existing vulnerabilities detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "dependency_advisories",
"band": "excellent",
"name": "Dependency advisories",
"note": "Excluded from scoring (no data or not applicable): Indirect dependencies free of known advisories, No advisories left outstanding. Remaining weights renormalized. Matched 204 resolved dependencies against OSV. This repository publishes no package the index resolves, so the repository dependency graph was assessed instead. That graph mixes development and test pins with shipped dependencies, so only the declared runtime dependencies are scored; transitive findings are reported as context and excluded from the score. Reachability is not analyzed.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"indirect_dependencies_free_of_known_advisories",
"no_advisories_left_outstanding"
]
}
},
{
"code": "weights_renormalized",
"params": {}
},
{
"code": "advisories_scope_repository",
"params": {
"assessed": 204
}
},
{
"code": "advisories_repo_graph_caveat",
"params": {}
},
{
"code": "advisories_reachability",
"params": {}
}
],
"value": 100,
"inputs": {
"source": "osv",
"advisories": 75,
"affected_packages": 13,
"assessed_packages": 204,
"unassessed_packages": 0,
"affected_by_severity": "critical 2, high 6, moderate 4, low 1",
"direct_affected_packages": 0
},
"components": [
{
"key": "direct_dependencies_free_of_known_advisories",
"name": "Direct dependencies free of known advisories",
"detail": "no direct dependency carries a known advisory",
"points": 35,
"status": "met",
"details": [
{
"code": "no_direct_advisories",
"params": {}
}
],
"max_points": 35
},
{
"key": "indirect_dependencies_free_of_known_advisories",
"name": "Indirect dependencies free of known advisories",
"detail": "transitive set not separable from development and test dependencies in this scope",
"points": 0,
"status": "excluded",
"details": [
{
"code": "advisories_scope_not_separable",
"params": {}
}
],
"max_points": 25
},
{
"key": "no_advisories_left_outstanding",
"name": "No advisories left outstanding",
"detail": "no advisory carries a publication date",
"points": 0,
"status": "excluded",
"details": [
{
"code": "advisories_no_publication_date",
"params": {}
}
],
"max_points": 40
}
]
},
{
"key": "malicious_dependencies",
"band": "excellent",
"name": "Malicious dependencies",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"source": "osv",
"meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
"packages": [],
"red_flag": false,
"assessed_packages": 204,
"malicious_packages": 0,
"direct_malicious_packages": 0,
"withdrawn_malicious_packages": 0,
"installable_malicious_packages": 0
},
"components": [
{
"key": "no_dependency_reported_as_a_malicious_package",
"name": "No dependency reported as a malicious package",
"detail": "no dependency is reported as a malicious package",
"points": 100,
"status": "met",
"details": [
{
"code": "no_malicious_dependencies",
"params": {}
}
],
"max_points": 100
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "excellent",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"review_only_matches": 0,
"assessed_self_published_locations": 19
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "at_risk",
"name": "AI Readiness",
"value": 38,
"weight": 0,
"metrics": [
{
"key": "ai_agent_context",
"band": "critical",
"name": "Agent context & guidance",
"note": null,
"notes": [],
"value": 7,
"inputs": {
"has_llms_txt": false,
"legible_history_share": 0.124,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "legible_commit_history",
"name": "Legible commit history",
"detail": "12 of 97 human commits state their intent (structured subject or explanatory body)",
"points": 6.6,
"status": "partial",
"details": [
{
"code": "legible_history",
"params": {
"legible": 12,
"sampled": 97
}
}
],
"max_points": 40
}
]
},
{
"key": "ai_verify_loop",
"band": "moderate",
"name": "Verify loop (build / test / typecheck)",
"note": null,
"notes": [],
"value": 53,
"inputs": {
"has_nix": false,
"has_tests": true,
"lockfiles": [
"uv.lock"
],
"has_dockerfile": false,
"typed_language": false,
"bootstrap_files": [],
"has_devcontainer": false,
"has_linter_config": true,
"typecheck_configs": [],
"agent_commit_share": 0.1,
"toolchain_manifests": [],
"dependency_bot_commit_share": 0
},
"components": [
{
"key": "one_command_bootstrap",
"name": "One-command bootstrap",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "automated_tests",
"name": "Automated tests",
"detail": null,
"points": 22,
"status": "met",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": null,
"points": 11,
"status": "met",
"details": [],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": "lockfile",
"points": 10,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "lockfile"
}
}
],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "10 of the last 100 commits agent-authored or agent-credited",
"points": 10,
"status": "met",
"details": [
{
"code": "agent_authored_commits",
"params": {
"count": 10,
"sampled": 100
}
}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "no automated dependency updates observed",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_dependency_automation",
"params": {}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "moderate",
"name": "Code legibility for models",
"note": null,
"notes": [],
"value": 55,
"inputs": {
"primary_language": "Python",
"largest_source_bytes": 30684,
"source_files_sampled": 106,
"oversized_source_files": 0
},
"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "Python without a type-check config",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_typecheck_config_language",
"params": {
"language": "Python"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "0/106 source files over 60KB",
"points": 55,
"status": "met",
"details": [
{
"code": "oversized_source_files",
"params": {
"kb": 60,
"sampled": 106,
"oversized": 0
}
}
],
"max_points": 55
}
]
},
{
"key": "ai_interfaces",
"band": "at_risk",
"name": "Machine-readable interfaces",
"note": null,
"notes": [],
"value": 40,
"inputs": {
"example_dirs": [
"notebooks"
],
"has_mcp_signal": false,
"api_schema_files": []
},
"components": [
{
"key": "api_schema_openapi_graphql_proto",
"name": "API schema (OpenAPI/GraphQL/proto)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 40
},
{
"key": "mcp_server",
"name": "MCP server",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "runnable_examples",
"name": "Runnable examples",
"detail": "notebooks",
"points": 40,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "notebooks"
}
}
],
"max_points": 40
}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.13.0"
},
"warnings": [
"deps.dev does not index pypi:liana@1.8.1; advisories assessed against the repository dependency graph instead"
],
"report_type": "repository",
"generated_at": "2026-07-21T21:22:29.975173Z",
"schema_version": "0.23.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/s/saezlab/liana-py.svg",
"full_name": "saezlab/liana-py",
"license_state": "standard",
"license_spdx": "BSD-3-Clause"
}