公开记录良好
软件健康报告模式 0.23.0 · 指标 1.13.0 · 2026-07-21 20:45 UTC
Clinical-Genomics / scout
VCF visualization interface
Clinical-Genomics/scout 的健康指数为 100 分中的 82 分，处于「良好」区间。 其得分最高的类别是Vitality（98/100），最低的是AI Readiness（53/100）。 最近一次更新在 1 天前。 近期的大部分工作由 2 位贡献者完成。
82
总分 / 100软件健康指数
指标归入加权类别，统一采用 1–100 量表。总体分先取类别加权平均；当公开证据触发高风险司法辖区政策时，评级会按政策调整，并设置 49（有风险）的上限。AI 就绪度不计入总体分。
82
优秀85-100堪称典范；基本满足所有检验标准
良好70-84健康；仅有轻微不足
中等50-69可接受，但存在明显不足；建议进行审查
存在风险30-49存在重大薄弱环节；采用时应保持审慎
危急1-29问题严重（项目被弃置、仅有单一维护者、缺乏基本工程规范）
评分画像
每条轴代表一个类别。形状比平均值更重要——健康的对象会填满整个图形，而“一峰一谷”式画像意味着某一维度的优势正掩盖另一维度的风险。
所有权
软件包生态系统
按类别列示的指标
活力
项目是否仍有生命——是否仍在编写代码，是否仍在发布版本？
98
开发活跃度
96优秀
评分方式
| 36/36 | 推送新近度 — 最近一次推送于 1 天前 |
| 32.5/36 | 提交节奏 — 52 周中有 47 周有提交 |
| 18/18 | 提交量 — 最近一年 376 次提交 |
| 10/10 | OpenSSF Scorecard：Maintained — 30 commit(s) and 27 issue activity found in the last 90 days -- score normalized to 10 |
所用输入
| commits_last_year | 376 |
| human_commit_share | 1 |
| days_since_last_push | 1 |
| active_weeks_last_year | 47 |
发布纪律
100优秀
评分方式
| 27/27 | 有发布版本 — 已发布 100 个发布版本 |
| 36/36 | 发布时效 — 最近一次发布版本于 6 天前 |
| 27/27 | 发布节奏 — 约每 9.1 天发布一次 |
| 0/10 | OpenSSF Scorecard：Signed-Releases — 无数据 |
所用输入
| releases_count | 100 |
| latest_release_tag | v4.113.3 |
| releases_from_tags | 否 |
| days_since_latest_release | 6 |
| mean_days_between_releases | 9.1 |
已排除计分（无数据或不适用）：OpenSSF Scorecard：Signed-Releases。 其余权重已重新归一化。
社区与采用
项目是否拥有用户、下载量与关注度，并具备欢迎贡献者参与的配置？
66
流行度与采用
57中等
评分方式
| 36.5/60 | 星标 — 179 个星标 |
| 14.2/25 | 复刻 — 51 个复刻 |
| 6/15 | 关注者 — 13 位关注者 |
所用输入
| forks | 51 |
| stars | 179 |
| watchers | 13 |
| growth_state | organic |
| growth_factor_pct | 100 |
社区健康
77良好
评分方式
| 22.5/22.5 | README |
| 22.5/22.5 | 许可证 — 可识别的许可证（BSD-3-Clause） |
| 18/18 | CONTRIBUTING 指南 |
| 0/13.5 | 行为准则 |
| 0/7.2 | 议题模板 |
| 6.3/6.3 | PR 模板 |
所用输入
| has_readme | 是 |
| has_license | 是 |
| has_contributing | 是 |
| has_issue_template | 否 |
| has_code_of_conduct | 否 |
| has_pull_request_template | 是 |
可持续性与治理
项目能否在其成员之外延续——巴士系数、响应能力、由谁支持，以及软件包的维护状况？
79
维护者韧性（巴士系数）
63中等
评分方式
| 25.2/54 | 巴士系数 — 2 位贡献者贡献了半数提交 |
| 14/22.5 | 提交分布 — 头号贡献者编写了 38% 的提交 |
| 13.5/13.5 | 贡献者广度 — 33 位贡献者 |
| 10/10 | OpenSSF Scorecard：Contributors — project has 15 contributing companies or organizations |
所用输入
| bus_factor | 2 |
| contributors_sampled | 33 |
| top_contributor_share | 0.377 |
议题与 PR 响应能力
92优秀
评分方式
| 43.3/46.8 | 议题解决 — 93% 的议题已关闭 |
| 35.1/38.3 | PR 接受 — 已裁定的 PR 中 2,732/2,973 已合并 |
| 13.5/15 | OpenSSF Scorecard：Code-Review — Found 29/30 approved changesets -- score normalized to 9 |
所用输入
| merged_prs | 2,732 |
| open_issues | 245 |
| closed_issues | 3,097 |
| issue_closed_ratio | 0.927 |
| closed_unmerged_prs | 241 |
所有权与托管责任
69中等
评分方式
| 30/30 | 所有权背书 — 组织持有 |
| 0/20 | 已验证域名 |
| 14.3/25 | 所有者影响力 — Clinical-Genomics 有 96 位关注者 |
| 25/25 | 既往记录 — 123 个公开仓库，账户约 12 年 |
所用输入
| followers | 96 |
| owner_type | Organization |
| is_verified | — |
| owner_login | Clinical-Genomics |
| public_repos | 123 |
| account_age_days | 4,570 |
软件包维护
100优秀
评分方式
| 25/25 | 已发布且可解析 — pypi 上有 1 个软件包 |
| 35/35 | 发布时效 — 最近一次发布于 6 天前 |
| 20/20 | 版本历史 — 194 个已发布版本 |
| 20/20 | 未被弃用 — 活跃，未被弃用或撤回 |
所用输入
| packages | scout-browser |
| ecosystems | pypi |
| any_deprecated | 否 |
| min_days_since_publish | 6 |
工程质量
基础的工程与文档实践是否到位？
96
工程实践
100优秀
评分方式
| 24/24 | CI 工作流 — 9 个工作流 |
| 24/24 | 存在测试 |
| 16/16 | Linter 配置 |
| 9.6/9.6 | Pre-commit 钩子 |
| 6.4/6.4 | .editorconfig |
| 20/20 | OpenSSF Scorecard：CI-Tests — 30 out of 30 merged PRs checked by a CI test -- score normalized to 10 |
所用输入
| has_ci | 是 |
| has_tests | 是 |
| has_editorconfig | 是 |
| has_linter_config | 是 |
| has_precommit_config | 是 |
文档
90优秀
评分方式
| 30/30 | README |
| 25/25 | 文档目录 |
| 15/15 | 文档 / 主页站点 — https://clinical-genomics.github.io/scout |
| 10/10 | 仓库描述 |
| 0/10 | 主题标签 |
| 10/10 | Wiki |
所用输入
| topics | — |
| has_wiki | 是 |
| homepage | https://clinical-genomics.github.io/scout |
| has_readme | 是 |
| has_docs_dir | 是 |
| has_description | 是 |
安全
可见的安全与供应链实践是否稳固，且不存在未解决的高风险司法辖区暴露？
66
安全态势
65中等
评分方式
| 7.5/7.5 | Binary-Artifacts — no binaries found in the repo |
| 0/7.5 | Branch-Protection — 无数据 |
| 2.5/2.5 | CI-Tests — 30 out of 30 merged PRs checked by a CI test -- score normalized to 10 |
| 0/2.5 | CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected |
| 6.8/7.5 | Code-Review — Found 29/30 approved changesets -- score normalized to 9 |
| 2.5/2.5 | Contributors — project has 15 contributing companies or organizations |
| 10/10 | Dangerous-Workflow — no dangerous workflow patterns detected |
| 0/7.5 | Dependency-Update-Tool — no update tool detected |
| 0/5 | Fuzzing — project is not fuzzed |
| 2.5/2.5 | 许可证 — license file detected |
| 7.5/7.5 | Maintained — 30 commit(s) and 27 issue activity found in the last 90 days -- score normalized to 10 |
| 5/5 | Packaging — packaging workflow detected |
| 0/5 | Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
| 5/5 | SAST — SAST tool is run on all commits |
| 2/5 | Security-Policy — security policy file detected |
| 0/7.5 | Signed-Releases — 无数据 |
| 0/7.5 | Token-Permissions — detected GitHub workflow tokens with excessive permissions |
| 6.8/7.5 | Vulnerabilities — 1 existing vulnerabilities detected |
所用输入
| source | openssf_scorecard |
| checks_evaluated | 16 |
| scorecard_version | v5.5.0 |
| checks_inconclusive | 2 |
| scorecard_aggregate | 6.4 |
已排除计分（无数据或不适用）：branch_protection, signed_releases。 其余权重已重新归一化。
依赖安全公告
69中等
评分方式
| 11.5/35 | 直接依赖不含已知公告 — 1 个受影响：pdfkit 1.0.0 (high 8.4) |
| 0/25 | 间接依赖不含已知公告 — 在此范围内，传递依赖集合无法与开发和测试依赖区分 |
| 40/40 | 没有长期未处理的公告 — 没有公告公开超过 90 天 |
所用输入
| source | osv |
| advisories | 2 |
| affected_packages | 1 |
| assessed_packages | 118 |
| unassessed_packages | 0 |
| affected_by_severity | high 1 |
| direct_affected_packages | 1 |
已排除计分（无数据或不适用）：间接依赖不含已知公告。 其余权重已重新归一化。 已将 118 个已解析依赖与 OSV 比对。 该仓库未发布任何索引可解析的软件包，因此改为评估仓库依赖图。该图将开发与测试版本固定同交付的依赖混在一起，因此仅对声明的运行时依赖计分；传递性发现仅作为背景信息列出，不计入评分。 未对可达性进行分析。
AI 就绪度
该仓库在多大程度上具备与 AI 编码代理协同开发与维护的条件？这是一枚独立的实验性徽章——权重为 0.0，因此单独呈现，不影响总体健康评分。
53
AI 代理上下文与指引
40存在风险
评分方式
| 0/45 | 代理指令 — 没有 CLAUDE.md / AGENTS.md / 编辑器规则 |
| 0/15 | 机器可读文档（llms.txt） |
| 40/40 | 可读的提交历史 — 100 次人类提交中有 100 次说明了意图（结构化标题或解释性正文） |
所用输入
| has_llms_txt | 否 |
| legible_history_share | 1 |
| agent_instruction_files | — |
| agent_instruction_max_bytes | — |
评分方式
| 18/18 | 一条命令的引导启动 — Makefile |
| 22/22 | 自动化测试 |
| 11/11 | Lint / 格式化配置 |
| 0/11 | 静态类型检查 |
| 10/10 | 可复现环境 — Dockerfile, lockfile |
| 0/10 | 已体现的代理实践 — 最近 100 次提交中没有代理编写的提交 |
| 0/8 | 自动化维护 — 未观察到自动依赖更新 |
| 0/10 | OpenSSF Scorecard：Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
所用输入
| has_nix | 否 |
| has_tests | 是 |
| lockfiles | uv.lock |
| has_dockerfile | 是 |
| typed_language | 否 |
| bootstrap_files | Makefile |
| has_devcontainer | 否 |
| has_linter_config | 是 |
| typecheck_configs | — |
| agent_commit_share | 0 |
| toolchain_manifests | — |
| dependency_bot_commit_share | 0 |
面向模型的代码可读性
55中等
评分方式
| 0/45 | 可类型检查的代码 — HTML，未配置类型检查 |
| 54.7/55 | 可控的文件大小 — 采样的 566 个源文件中有 3 个超过 60KB |
所用输入
| primary_language | HTML |
| largest_source_bytes | 79,453 |
| source_files_sampled | 566 |
| oversized_source_files | 3 |
关键数据
179GitHub 星标
33贡献者
376最近 12 个月提交数
1距最近推送天数
100发布版本数
2巴士系数（bus factor）
245开放议题
PyPI软件包生态系统数
数据采集警告
- deps.dev does not index pypi:scout-browser@4.113.3; advisories assessed against the repository dependency graph instead
更多细节
Star 与 Fork 历史 179 ★ / 51 ⇿
179Star
51Fork
99发布
每颗 star 和每个 fork 的添加时间，来自 GitHub 并按天汇总。累计增长位于其构成来源——每日新增——的正上方，二者可相互对照：稳定的自然增长与短暂的突增形态截然不同。当这一差别可被衡量时，它会作为增长真实性予以报告。
主版本 0次版本 1修订 42
每个点涵盖 11 天。
OpenSSF Scorecard 6.4 / 10
6.4综合
来自开源项目 OpenSSF Scorecard 的独立、工具无关的安全评估。每项检查奖励的是安全实践本身，而非特定供应商的工具。Scorecard 无法判定的检查项标记为 不适用，并从安全评分中剔除（绝不按零分计）。
| 10 | Binary-Artifacts | no binaries found in the repo |
| 不适用 | Branch-Protection | internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md |
| 10 | CI-Tests | 30 out of 30 merged PRs checked by a CI test -- score normalized to 10 |
| 0 | CII-Best-Practices | no effort to earn an OpenSSF best practices badge detected |
| 9 | Code-Review | Found 29/30 approved changesets -- score normalized to 9 |
| 10 | Contributors | project has 15 contributing companies or organizations |
| 10 | Dangerous-Workflow | no dangerous workflow patterns detected |
| 0 | Dependency-Update-Tool | no update tool detected |
| 0 | Fuzzing | project is not fuzzed |
| 10 | License | license file detected |
| 10 | Maintained | 30 commit(s) and 27 issue activity found in the last 90 days -- score normalized to 10 |
| 10 | Packaging | packaging workflow detected |
| 0 | Pinned-Dependencies | dependency not pinned by hash detected -- score normalized to 0 |
| 10 | SAST | SAST tool is run on all commits |
| 4 | Security-Policy | security policy file detected |
| 不适用 | Signed-Releases | no releases found |
| 0 | Token-Permissions | detected GitHub workflow tokens with excessive permissions |
| 9 | Vulnerabilities | 1 existing vulnerabilities detected |
直接依赖 36
| 注册表 | 软件包 | 版本约束 | 清单文件 |
|---|---|---|---|
| PyPI | werkzeug | — | pyproject.toml |
| PyPI | Flask | >=2.0 | pyproject.toml |
| PyPI | Flask-Bootstrap | — | pyproject.toml |
| PyPI | Flask-CORS | — | pyproject.toml |
| PyPI | path.py | — | pyproject.toml |
| PyPI | markdown | — | pyproject.toml |
| PyPI | WTForms | — | pyproject.toml |
| PyPI | Flask-WTF | — | pyproject.toml |
| PyPI | Flask-Mail | — | pyproject.toml |
| PyPI | coloredlogs | — | pyproject.toml |
| PyPI | query_phenomizer | — | pyproject.toml |
| PyPI | Flask-Babel | >=3 | pyproject.toml |
| PyPI | livereload | >=2.7 | pyproject.toml |
| PyPI | tornado | >=6.4.1 | pyproject.toml |
| PyPI | python-dateutil | — | pyproject.toml |
| PyPI | pymongo | — | pyproject.toml |
| PyPI | pathlib | — | pyproject.toml |
| PyPI | pdfkit | — | pyproject.toml |
| PyPI | phenopackets | — | pyproject.toml |
| PyPI | xlsxwriter | — | pyproject.toml |
| PyPI | click | — | pyproject.toml |
| PyPI | cryptography | — | pyproject.toml |
| PyPI | defusedxml | — | pyproject.toml |
| PyPI | importlib_resources | — | pyproject.toml |
| PyPI | authlib | — | pyproject.toml |
| PyPI | flask-login | — | pyproject.toml |
| PyPI | cyvcf2 | — | pyproject.toml |
| PyPI | configobj | — | pyproject.toml |
| PyPI | ped_parser | — | pyproject.toml |
| PyPI | pydantic | >=2 | pyproject.toml |
| PyPI | PyYaml | >=5.1 | pyproject.toml |
| PyPI | intervaltree | ==3.0.2 | pyproject.toml |
| PyPI | anytree | — | pyproject.toml |
| PyPI | tabulate | — | pyproject.toml |
| PyPI | flask-ldap3-login | >=1.0.2 | pyproject.toml |
| PyPI | chanjo-report | >=4.12.2 | pyproject.toml |
全部依赖 118
来自 GitHub 依赖图的完整解析依赖集合：36 个直接依赖与 82 个间接（传递）软件包。仓库提交锁文件时，传递闭包才是完整的。
| 注册表 | 软件包 | 版本 | 关系 |
|---|---|---|---|
| PyPI | anytree | 2.13.0 | 直接 |
| PyPI | authlib | 1.7.2 | 直接 |
| PyPI | chanjo-report | 4.12.2 | 直接 |
| PyPI | click | 8.4.2 | 直接 |
| PyPI | coloredlogs | 15.0.1 | 直接 |
| PyPI | configobj | 5.0.9 | 直接 |
| PyPI | cryptography | 49.0.0 | 直接 |
| PyPI | cyvcf2 | 0.34.0 | 直接 |
| PyPI | defusedxml | 0.7.1 | 直接 |
| PyPI | flask | 3.1.3 | 直接 |
| PyPI | flask-babel | 4.0.0 | 直接 |
| PyPI | flask-bootstrap | 3.3.7.1 | 直接 |
| PyPI | flask-cors | 6.0.5 | 直接 |
| PyPI | flask-ldap3-login | 1.0.2 | 直接 |
| PyPI | flask-login | 0.7.0.dev0 | 直接 |
| PyPI | flask-mail | 0.10.0 | 直接 |
| PyPI | flask-wtf | 1.3.0 | 直接 |
| PyPI | importlib-resources | 7.1.0 | 直接 |
| PyPI | intervaltree | 3.0.2 | 直接 |
| PyPI | livereload | 2.7.1 | 直接 |
| PyPI | markdown | 3.10.2 | 直接 |
| PyPI | path-py | 12.5.0 | 直接 |
| PyPI | pathlib | 1.0.1 | 直接 |
| PyPI | pdfkit | 1.0.0 | 直接 |
| PyPI | ped-parser | 1.6.6 | 直接 |
| PyPI | phenopackets | 2.0.2.post5 | 直接 |
| PyPI | pydantic | 2.13.4 | 直接 |
| PyPI | pymongo | 4.17.0 | 直接 |
| PyPI | python-dateutil | 2.9.0.post0 | 直接 |
| PyPI | pyyaml | 6.0.3 | 直接 |
| PyPI | query-phenomizer | 1.2.1 | 直接 |
| PyPI | tabulate | 0.10.0 | 直接 |
| PyPI | tornado | 6.5.7 | 直接 |
| PyPI | werkzeug | 3.1.8 | 直接 |
| PyPI | wtforms | 3.2.2 | 直接 |
| PyPI | xlsxwriter | 3.2.9 | 直接 |
| PyPI | annotated-types | 0.7.0 | 间接 |
| PyPI | babel | 2.18.0 | 间接 |
| PyPI | backrefs | 7.0 | 间接 |
| PyPI | black | 26.5.1 | 间接 |
| PyPI | blinker | 1.9.0 | 间接 |
| PyPI | certifi | 2026.6.17 | 间接 |
| PyPI | cffi | 2.1.0 | 间接 |
| PyPI | chanjo | 4.9.1 | 间接 |
| PyPI | charset-normalizer | 3.4.9 | 间接 |
| PyPI | colorama | 0.4.6 | 间接 |
| PyPI | coverage | 7.15.1 | 间接 |
| PyPI | dnspython | 2.8.0 | 间接 |
| PyPI | dominate | 2.9.1 | 间接 |
| PyPI | exceptiongroup | 1.3.1 | 间接 |
| PyPI | flask-debugtoolbar | 0.16.0 | 间接 |
| PyPI | flask-sqlalchemy | 3.1.1 | 间接 |
| PyPI | ghp-import | 2.1.0 | 间接 |
| PyPI | greenlet | 3.5.3 | 间接 |
| PyPI | humanfriendly | 10.0 | 间接 |
| PyPI | idna | 3.18 | 间接 |
| PyPI | importlib-metadata | 9.0.0 | 间接 |
| PyPI | iniconfig | 2.3.0 | 间接 |
| PyPI | invoke | 3.0.3 | 间接 |
| PyPI | isort | 8.0.1 | 间接 |
| PyPI | itsdangerous | 2.2.0 | 间接 |
| PyPI | jinja2 | 3.1.6 | 间接 |
| PyPI | joserfc | 1.7.3 | 间接 |
| PyPI | ldap3 | 2.9.1 | 间接 |
| PyPI | lxml | 6.1.1 | 间接 |
| PyPI | markdown-include | 0.8.1 | 间接 |
| PyPI | markupsafe | 3.0.3 | 间接 |
| PyPI | mergedeep | 1.3.4 | 间接 |
| PyPI | mkdocs | 1.6.1 | 间接 |
| PyPI | mkdocs-get-deps | 0.2.2 | 间接 |
| PyPI | mkdocs-material | 9.7.6 | 间接 |
| PyPI | mkdocs-material-extensions | 1.3.1 | 间接 |
| PyPI | mongomock | 4.3.0 | 间接 |
| PyPI | mypy-extensions | 1.1.0 | 间接 |
| PyPI | numpy | 2.2.6 | 间接 |
| PyPI | numpy | 2.4.6 | 间接 |
| PyPI | numpy | 2.5.1 | 间接 |
| PyPI | packaging | 26.2 | 间接 |
| PyPI | paginate | 0.5.7 | 间接 |
| PyPI | path | 17.1.1 | 间接 |
| PyPI | pathspec | 1.1.1 | 间接 |
| PyPI | platformdirs | 4.10.0 | 间接 |
| PyPI | pluggy | 1.6.0 | 间接 |
| PyPI | protobuf | 6.33.6 | 间接 |
| PyPI | pyasn1 | 0.6.4 | 间接 |
| PyPI | pycparser | 3.0 | 间接 |
| PyPI | pydantic-core | 2.46.4 | 间接 |
| PyPI | pygments | 2.20.0 | 间接 |
| PyPI | pymdown-extensions | 11.0.1 | 间接 |
| PyPI | pymysql | 1.2.0 | 间接 |
| PyPI | pyreadline3 | 3.5.6 | 间接 |
| PyPI | pyscss | 1.4.0 | 间接 |
| PyPI | pytest | 9.1.1 | 间接 |
| PyPI | pytest-cov | 7.1.0 | 间接 |
| PyPI | pytest-flask | 1.3.0 | 间接 |
| PyPI | pytest-mock | 3.15.1 | 间接 |
| PyPI | pytest-test-groups | 1.2.1 | 间接 |
| PyPI | pytokens | 0.4.1 | 间接 |
| PyPI | pytz | 2026.2 | 间接 |
| PyPI | pyyaml-env-tag | 1.1 | 间接 |
| PyPI | requests | 2.34.2 | 间接 |
| PyPI | responses | 0.26.2 | 间接 |
| PyPI | ruff | 0.15.21 | 间接 |
| PyPI | scout-browser | 4.113.3 | 间接 |
| PyPI | sentinels | 1.1.1 | 间接 |
| PyPI | six | 1.17.0 | 间接 |
| PyPI | sortedcontainers | 2.4.0 | 间接 |
| PyPI | sqlalchemy | 2.0.51 | 间接 |
| PyPI | sqlservice | 3.1.0 | 间接 |
| PyPI | toml | 0.10.2 | 间接 |
| PyPI | tomli | 2.4.1 | 间接 |
| PyPI | toolz | 1.1.0 | 间接 |
| PyPI | typing-extensions | 4.16.0 | 间接 |
| PyPI | typing-inspection | 0.4.2 | 间接 |
| PyPI | urllib3 | 2.7.0 | 间接 |
| PyPI | visitor | 0.1.3 | 间接 |
| PyPI | watchdog | 6.0.0 | 间接 |
| PyPI | zipp | 4.1.0 | 间接 |
依赖安全公告 1
该仓库未发布可被索引解析的包，因此评估的是其自身的依赖图——共 118 个包，其中也包含从不交付的开发与测试版本固定：1 个存在已知公告，1 个为直接依赖。
| 软件包 | 版本 | 关系 | 严重程度 | 公告数 | 修复版本 |
|---|---|---|---|---|---|
| pdfkit | 1.0.0 | 直接 | 高 | 2 | — |
公告表示依赖图中记录的版本落入某条公告的受影响范围。可达性未经分析，且依赖图包含开发与测试的版本固定——某项发现可能只涉及工具链而非交付的软件。
原始 JSON 报告 机器可读
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"Makefile": 1067,
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"JavaScript": 61768
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"created_at": "2014-10-10T08:44:01Z",
"owner_type": "Organization",
"updated_at": "2026-07-15T11:53:27Z",
"description": "VCF visualization interface",
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"headline": "Minor release 4.113 (#6412)",
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"body": "…n admin (#6416)\n\n* Institute-level dismiss variants tahs\n\n* Display selected items on institute settings\n\n* PR ref in changelog\n\n* Remove logging messages\n\n* Thanks SonarCloud\n\n* How about this\n\n* Tiny fix\n\n* Other fix\n\n* Removed a couple of commas\n\n* Apply the same on variant page\n\n* Small fix\n\n* Add a test\n\n* Revert ID of form element\n\n* Fix according to review\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
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"headline": "Customise displayed variant dismiss tags in institute settings - as a…",
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"body": "* Fix error in typing on adapter acmg module\n\n* Fix one more of the same\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
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"headline": "Fix error in typing on adapter acmg module (#6433)",
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"body": "…ants (#6430)\n\n* Fix #6428 - GnomAD MT link out from empty r2 to r3/r4 build with variants\n\n* Fix #6431 - de-duplicate MT links\n\n* convince sonarcloud\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>",
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"headline": "Fix #6428 - GnomAD MT link out from empty r2 to r3/r4 build with vari…",
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"body": "* Hide variants with no GT call on MT reports\n\n* Remove unused import and add PR ref\n\n* Explicit skip variant\n\n* Apply suggestion from @dnil\n\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>\n\n* Fix code style issues with Black\n\n* Use a common constant\n\n* Rename constant\n\n* Reduce complexity\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>\nCo-authored-by: Lint Action <lint-action@samuelmeuli.com>",
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"headline": "Hide variants with no GT call on MT reports (#6429)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-06-22T13:08:29Z",
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"headline": "Fix #6425 - sort external gene links esp litvar2 link (#6426)",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
"committed_at": "2026-06-22T08:28:08Z",
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"body": "* Moved liftover mocked responses to conftests\n\n* Small fix\n\n* Changelog ref\n\n* json to dict\n\n* Fixed changelog\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
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"headline": "Moved liftover mocked responses to conftest (#6415)",
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"body": "* Display 2 GnomAD frequency links on SNV and Gene pages\n\n* Small fixes\n\n* Safer code\n\n* Do not repeat gene links 4 times\n\n* Just one gene link\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
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"headline": "Display 2 GnomAD frequency links on SNV and Gene pages (#6413)",
"author_name": "Chiara Rasi",
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"body": "* Fix #6392 - NA for missing GQ. TypeHint for ACMG evaluation criterion.\n\n* Changelog\n\n* Bump Changelog PR nr\n\n* Update scout/models/acmg_evaluation.py\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>",
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"headline": "Missing gq na (#6420)",
"author_name": "Daniel Nilsson",
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"body": "* Same icon on case page\n\n* Updated changelog\n\n* Fix changelog\n\n* Group icon only if more than one sample\n\n* Revert the config\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>",
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"headline": "Clearer gens buttons on SV variant page (#6410)",
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"body": "* ACMG evaluation page doesn't close after submission\n\n* Import missing modules\n\n* Add PR ref\n\n* Fixed clearing ACMG without criterua\n\n* Fix syntax in test\n\n* Small fix for return type\n\n* Same fix in other function\n\n* Use fake model for criteria and fix type hint\n\n* Introduced double button, to optionally redirect\n\n* Updated changelog\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
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"headline": "Keep ACMG classification open after submit (#6405)",
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"body": "Co-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
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"headline": "Normalise email/id field to lowercase when using LDAP login (#6407)",
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"body": "* Normalize new users' emails when created by GUI\n\n* Fix test\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
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"headline": "Normalize new users' emails when created by GUI (#6406)",
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"body": "* Fix #6363 - comments accept markdown syntax\n\n* Update changelog PR nr\n\n* Update changelog\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>",
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"headline": "Fix #6363 - comments accept markdown syntax (#6401)",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
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"headline": "Compare LDAP auth response against enum (#6400)",
"author_name": "Alexander Koc",
"author_login": "alkc",
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"body": "* Fix links in causatives exported to managed variants format\n\n* Remove debug messages\n\n* Even better fix\n\n* Rename one more\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>",
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"headline": "Fix links in causatives exported to managed variants format (#6398)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-06-12T12:50:34Z",
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"body": "* Fix exporting causatives from 38 cases without --build param\n\n* Fix before\n\n* Same length in tuple\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>",
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"headline": "Fix exporting causatives from 38 cases without --build param (#6399)",
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"body": "…reas (#6390)\n\n* Fix PDF export to support multi-page output\n\n* Remove empty lines\n\n* PR ref in changelog\n\n* Reintroduce textarea text wrapping\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
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"headline": "Fix ACMG PDF export to support multi-page output and multi-line texta…",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-06-12T05:25:29Z",
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"body": "* Add Mitorsaw\n\n* changelog",
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"headline": "Add mitorsaw (#6393)",
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"author_login": "dnil",
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"body": "* Fix editing ACMG comments on reclassify\n\n* Remove extra space at the beginning of the comment\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>",
"is_bot": false,
"headline": "Fix editing ACMG comments on reclassify (#6388)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
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"body": "* Fix #6263 - search for specific simple id/variant id\n\n* Changelog\n\n* maybe actually keep the case query\n\n* better tooltip\n\n* fix according to test\n\n* Fix according to review\n\n* false positive...\n\n* Update scout/adapter/mongo/query.py\n\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>\n\n* \n[…]\nrints/institutes/views.py\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>\n\n* Rephrase warning slightly\n\n* and the tooltip similarly\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>",
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"headline": "Search specific var (#6385)",
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"author_login": "dnil",
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"body": "* Tooltip with LoqusDB instances description\n\n* PR ref in changelog\n\n* Simplify code\n\n* Safer code, as per review\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>",
"is_bot": false,
"headline": "Tooltip with LoqusDB instances description (#6384)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
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"body": "* Use mock HPO terms in test\n\n* PR ref in changelog\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>",
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"headline": "Use mock HPO terms in test (#6383)",
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"body": "* Fix #6376 - add an activate case button\n\n* Changelog\n\n* state rather than action",
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"headline": "Fix #6376 - add an activate case button (#6379)",
"author_name": "Daniel Nilsson",
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"body": "* Fix #6374 - add live search option\n\n* right, dash instead of underscore when given directly\n\n* changelog\n\n* another space\n\n* and a handful more\n\n* and another space for those\n\n* wrong type\n\n* minor formatting\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>",
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"headline": "Live search (#6377)",
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"body": "* Fix colspan for gene variants table - no variants found\n\n* Fix #5005 - extend filters on gene variants page\n\n* attempt to reuse secondary query builder\n\n* Fix #3946 - search SNVs and SVs CADD, gnomAD, SpliceAI, REVEL\n\n* Changelog\n\n* compact filter form: move the conceptually different OMIM genetic\n[…]\ncomment the shared / individual fields in the class for now\n\n* tooltip\n\n* see, copy-paste is hard\n\n* dash style var names in direct html\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>",
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"headline": "Gene vars inheritance (#6357)",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
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"body": "* Add 'Has methylation' filter on cases page\n\n* Typo\n\n* Add a test\n\n* Persist has_methylation if case is updated\n\n* Thanks SonarQube\n\n* Updated changelog\n\n* Remove spacing at the beginning\n\n* Rename style and be done with it\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>",
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"headline": "Add 'Has methylation' filter on cases page (#6375)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
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"body": "* Methylation badge on cases page\n\n* Update CHANGELOG.md\n\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
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"headline": "Methylation badge on cases page (#6373)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
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"oid": "b29cfe72fde45020ffce5868bd57e8281419244c",
"body": "* Fix #6295 - filter dark regions/sma page for gene panels\n\n* Add a Clinical HPO Dark link button to the case page\n\n* Move filter, title style\n\n* adjust title\n\n* Format dark panels filter like variants filter collapse\n\n* reorder cards\n\n* formatting\n\n* light mode reset visibility\n\n* reuse part of fun\n[…]\nof tests\n\n* revert import\n\n* Test comments\n\n* Apply suggestion from @northwestwitch\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>",
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"headline": "Fix #6295 - filter dark regions/sma page for gene panels (#6353)",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
"committed_at": "2026-06-05T08:42:21Z",
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"body": "* Only admins can edit collaborators to share cases with\n\n* Fix field reset by non-admin user\n\n* typo\n\n* common function for string values\n\n* Rename the other function\n\n* Nope, like this\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
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"headline": "Only admins can edit collaborators to share cases with (#6370)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-06-04T12:45:33Z",
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"oid": "ed491678467eefe1b8de48de9a8e99cf5b3e723c",
"body": "…to db (#6369)\n\n* send on ccv modifiers to post to db function\n\n* Update changelog\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>",
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"headline": "Fixes bug where CCV classification ignores modifiers when submitting …",
"author_name": "molucorner",
"author_login": "molucorner",
"committed_at": "2026-06-04T06:56:11Z",
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"oid": "539d41be895400cce8f2c722cbbb404b357bb8fc",
"body": "* Enable link to previous ACMG classifications for SV variants\n\n* Simplify\n\n* Add PR ref to changelog\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>",
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"headline": "Fix SV ACMG links for previous classifications (#6365)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-06-03T13:51:00Z",
"body_truncated": false,
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"oid": "7412a9862027e01843cf779505dd4ff798ae64af",
"body": "* Filter variants by gene OMIM disease inheritance\n\n* Forgot changelog\n\n* Add tests\n\n* Better label\n\n* Fix second col style\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
"is_bot": false,
"headline": "Filter variants by gene OMIM disease inheritance (#6355)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-06-02T05:44:07Z",
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"oid": "22397b0f3bea43b2d85542606fd3777d8354c823",
"body": "* litvar2 links to dbsnp id\n\n* fix changelog\n\n* Display simple deep links for litvar2 on all snp ids\n\n* One is enough\n\n* js script to check for litvar availability\n\n* move variant scripts to components\n\n* no, that hits cors. make a view, and do keep the link on failure to look up\n\n* a bit more docst\n[…]\nad risky for the reward\n\n* break out subfunctions to lower complexity, change a couple of linter style suggestions\n\n* use for-of instead\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>",
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"headline": "Litvar links (#6351)",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
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"oid": "fd371648ea7ee9b58ea9e06d2c5176bf9d7a9daf",
"body": "* Cache per-case genomic info when loading variants\n\n* PR ref in changelog\n\n* No need to cache genes\n\n* Clear case case and persist build-dependent info across cases, as per review\n\n* Actually clear the case cache\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>",
"is_bot": false,
"headline": "Cache per-case genomic info when loading variants (#6350)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-29T08:58:54Z",
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"oid": "ee242092bf568b5a5c5523c6108fbc0676a045a3",
"body": "* Work in progress\n\n* New service + tests\n\n* Fix alignment controller and relative tests\n\n* Fixed also align views\n\n* Updated changelog\n\n* Fix import\n\n* some fixed\n\n* Replace with empty string\n\n* Fix other test\n\n* Thanks SonarQube\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
"is_bot": false,
"headline": "Replace Ensembl liftover with Broad API liftover (#6293)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-28T09:53:53Z",
"body_truncated": false,
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{
"oid": "4f9a994876f51a0bc2256ca3f1eb7d2512dc47dd",
"body": "* Minor release 4.112\n\n* small fix in changelog\n\n* Fixed changelog\n\n* Fixed changelog\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
"is_bot": false,
"headline": "Minor release 4.112 (#6323)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-27T06:53:20Z",
"body_truncated": false,
"is_coding_agent": false
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{
"oid": "265bcff1e46a7ffe4af21f0a65885efc7b4eff2e",
"body": "* Fix #6321 - foldable matching variants on variant page\n\n* CHANGELOG\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>",
"is_bot": false,
"headline": "Fix #6321 - foldable matching variants on variant page (#6346)",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
"committed_at": "2026-05-27T06:15:26Z",
"body_truncated": false,
"is_coding_agent": false
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{
"oid": "53bf34943bc48d8d010501713aec6dda9d3b6cc2",
"body": "* Fix other warnings when loading regions and genes 38\n\n* Fix some more\n\n* final touch\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>",
"is_bot": false,
"headline": "Fix other warnings when loading regions and genes 38 (#6348)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-27T05:41:42Z",
"body_truncated": false,
"is_coding_agent": false
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{
"oid": "90354cbd161c01ef4741133e4f0ac083dc80cd92",
"body": "* Fix time limit in export causatives CLI\n\n* Fix PR ref in changelog\n\n* Trigger tests\n\n* Trigger tests\n\n* Retrigger tests\n\n* reretrigger tests\n\n* tests again\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
"is_bot": false,
"headline": "Fix time limit in export causatives CLI (#6338)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-26T13:16:49Z",
"body_truncated": false,
"is_coding_agent": false
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{
"oid": "c37c8fd097c747feba11e0415a46a86e342787ae",
"body": "* Fix searching variants by gene with build 38 genes\n\n* Simplify\n\n* Safer code\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
"is_bot": false,
"headline": "Fix search variants by gene with 38-only genes (#6340)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-26T11:01:37Z",
"body_truncated": false,
"is_coding_agent": false
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{
"oid": "48818448fb0ccd1b9ee2dde72a778172aceef40e",
"body": null,
"is_bot": false,
"headline": "Fix #6342 - load region check chromosome prefix (#6343)",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
"committed_at": "2026-05-26T09:46:45Z",
"body_truncated": false,
"is_coding_agent": false
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{
"oid": "b1fbe2dd289827f98eb453de4b4169b46131439e",
"body": "* Remember search options on panel filters\n\n* Work in progress\n\n* Some more improvements\n\n* Remembers filters on panel update\n\n* Updated changelog\n\n* Use constant and update changelog\n\n* Simplify panels function\n\n* Attempt at simplifying the function\n\n* Import types\n\n* Tiny fixes\n\n* Simplify some mo\n[…]\n institute select\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>\nCo-authored-by: Lint Action <lint-action@samuelmeuli.com>",
"is_bot": false,
"headline": "Remember panels filters when editing panels (#6305)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-26T05:27:57Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "19d77ca4dc8dcdce7937a4603bf2caa8861ef18c",
"body": "…(#6312)\n\n* Improve causatives page performance by removing duplicate case queries\n\n* PR ref in changelog\n\n* Consider limit genes\n\n* Add case tags to projection for good measure\n\n* Display case status tag on causatives and verified pages\n\n* Fix merge conflict, hopefully\n\n* Nope, but not it should wo\n[…]\n\n\n* order alphabetically list and add build\n\n* Function returns an iterable\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
"is_bot": false,
"headline": "Improve causatives page performance by removing duplicate case query …",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-25T06:23:08Z",
"body_truncated": true,
"is_coding_agent": false
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{
"oid": "51b3f8205cfc4b0a251ee2400db47217676615db",
"body": "* Remove unused imports on commands export variants module\n\n* fix changelog\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
"is_bot": false,
"headline": "Remove unused imports on commands/export/variants module (#6334)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-25T05:27:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e36652c0f93e24a08d97c745ada9d19586e8dd18",
"body": null,
"is_bot": false,
"headline": "Fix #6332 - add mitosalt SV tag (#6333)",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
"committed_at": "2026-05-22T16:04:38Z",
"body_truncated": false,
"is_coding_agent": false
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{
"oid": "dc3f8944badc16f84dad93da9f3afa3759847318",
"body": "* Expand export causatives cli to export as managed infile\n\n* Doesn't work yet\n\n* I'm stuck\n\n* Looks like it's working\n\n* Removed unused line\n\n* Fix code style issues with Black\n\n* trigger tests\n\n* Updated changelog\n\n* Fixed, almost\n\n* wip\n\n* Fix code here and there and test\n\n* Fix restrict query by\n[…]\nent as per review\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Lint Action <lint-action@samuelmeuli.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
"is_bot": false,
"headline": "CLI export causatives as managed (#6290)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-22T09:25:14Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "35065f67b3c1a72abfa312474ed97615fc2e6de8",
"body": "* Do not default to build 37 when loading variants from a case\n\n* Fix changelog\n\n* typo\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>",
"is_bot": false,
"headline": "Do not default to build 37 when loading variants from a case (#6331)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-22T08:56:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "688b22e4c5b34a0ef0a4bcc25654246bfa1e14c6",
"body": "* Clearer logs with case ID when variants loading fails\n\n* PR ref\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
"is_bot": false,
"headline": "Clearer logs with case ID when variants loading fails (#6329)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-22T08:34:38Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5a4727247ec6acb606d2fae107f0b9f95c2dc5a7",
"body": null,
"is_bot": false,
"headline": "Fix #6326 - display pending panel change comments (#6327)",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
"committed_at": "2026-05-22T08:16:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4f8a199c618c5947e957aa0469e6301e10b43d3a",
"body": "…315)\n\n* Display matching causatives' case status and tags on variant page\n\n* Add some spacing\n\n* PR ref on changelog\n\n* Better spacing\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
"is_bot": false,
"headline": "Display matching causatives' case status and tags on variant page (#6…",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-22T05:57:22Z",
"body_truncated": false,
"is_coding_agent": false
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{
"oid": "591d14eef28c529d44498564e205c87f608ec298",
"body": "… ACMG (#6325)\n\n* fix bug where likely beign overwrites benign as classification for ACMG\n\n* update changelog",
"is_bot": false,
"headline": "Fixes bug where likely benign overwrites benign as classification for…",
"author_name": "molucorner",
"author_login": "molucorner",
"committed_at": "2026-05-22T05:39:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ec9aae80ec3ff266ab7dcdf151e93c05a47e8bef",
"body": "* Fix #6307 - add export category tags\n\n* type hints\n\n* header\n\n* unused import\n\n* CAUSATIVE is better, right\n\n* changelog...",
"is_bot": false,
"headline": "Fix #6307 - add export category tags (#6324)",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
"committed_at": "2026-05-21T14:12:29Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d8ff563272f6f91ec161a514d0cfa677ddb2eae3",
"body": "* Fix trying to load research in build 37 for cases with build 38\n\n* tiny fix\n\n* Add PR reference\n\n* Fix test accordingly\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>",
"is_bot": false,
"headline": "Fix trying to load research in build 37 for cases with build 38 (#6322)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-21T12:58:47Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ba9b6eecfd311a51ff7911c81a29e273d73dbae6",
"body": "* Add contigs on exported VCF files - managed and causatives\n\n* forgot changelog\n\n* Update scout/constants/variants_export.py\n\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>\n\n* Use different chrom size according to build\n\n* Remove comment\n\n* Added 2 new lines in VCF (source) and cli, according tp review\n\n* Add missing import\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
"is_bot": false,
"headline": "Add contigs on exported VCF files - managed and causatives (#6310)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-21T08:51:19Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4bb63239033db832b945d54ffe268e668f2edea7",
"body": "* Do not capitalize Paraphase region names\n\n* Also do the sorting right\n\n* Leave status as it was, as it's mostly gene names\n\n* Apply suggestion from @dnil\n\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>\n\n* Update scout/server/blueprints/cases/templates/cases/case_sma_dark.html\n\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
"is_bot": false,
"headline": "Do not capitalize Paraphase region names (#6301)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-19T08:43:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "04756caa11732725830eddc80f3986ef6bf71a41",
"body": "* Fix adding one managed variant in build 38\n\n* Remove typo\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>",
"is_bot": false,
"headline": "Fix adding one managed variant in build 38 (#6300)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-19T05:47:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7ca2c4d278dec254d65b6ac31b6d7025aa216c1a",
"body": "Co-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>",
"is_bot": false,
"headline": "Display build in managed variants page (#6297)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-19T05:25:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "421dedc8df186613a7a2c8ced2b844abc7f94328",
"body": "* Fix #6291 - compress demo case fusion vcf\n\n* and add the files\n\n* change filename in tests\n\n* Update changelog\n\n* Update changelog",
"is_bot": false,
"headline": "Fix #6291 - compress demo case fusion vcf (#6292)",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
"committed_at": "2026-05-15T10:37:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e76928c195b7a84eb4ee39513eba3c05332b1e3a",
"body": "* Version 4.111.3 - reintroduce alias for panel\n\n* and 38 fallback",
"is_bot": false,
"headline": "Version 4.111.3 - reintroduce alias for panel (#6289)",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
"committed_at": "2026-05-12T17:10:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "67ff628bf08be63f93addc1439d1e687abce81be",
"body": "…… (#6288)\n\n* Fix #6287 - partly revert aliasing, use GRCh38 to mean add chr prefix also for export variants\n\n* add help text\n\n* Prefix for export transcripts as well\n\n* Changelog\n\n* use f string\n\n* add to docs as well\n\n* citations\n\n* Ahem",
"is_bot": false,
"headline": "Fix #6287 - partly revert aliasing, use GRCh38 to mean add chr prefix…",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
"committed_at": "2026-05-12T15:13:42Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1c2acc5b661e0b4b09b4881409e46b23af371933",
"body": null,
"is_bot": false,
"headline": "Version 4.111.1 (#6285)",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
"committed_at": "2026-05-12T12:08:12Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "159651021368fdad14795996abe3cb749d4f6a86",
"body": "* Fix #6282 - build aliases for export commands\n\n* Build for MT/M shift as well\n\n* fix test accordingly\n\n* unused imports",
"is_bot": false,
"headline": "Fix #6282 - build aliases for export commands (#6283)",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
"committed_at": "2026-05-12T11:35:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "303a47ce37c367d56516939b0c5ba4da1e43b79f",
"body": "* Version 4.111.0 release candidate\n\n* Changelog\n\n* Fixed changelog\n\n* Upgrade uv.lock to include latest chanjo and chanjo-report\n\n* update chanjo-report to 4.12.2\n\n* fresh uv.lock\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>",
"is_bot": false,
"headline": "Version 4.111.0 release candidate (#6264)",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
"committed_at": "2026-05-11T14:31:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "55e6691b6643692779b029bb23b762952119cd37",
"body": "* Fix #6276 - CLI mito report to use both M and MT\n\n* Might as well push the chanjo-report version to latest\n\n* right\n\n* Fix #6278 - describe MT var loading in admin docs\n\n* docs\n\n* ahem, that is passed to build_query",
"is_bot": false,
"headline": "Fix #6276 - CLI mito report to use both M and MT (#6277)",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
"committed_at": "2026-05-11T14:05:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a3be8242dfcb504766266e76a86d79a795fe6d66",
"body": "* Fix #6274 - institute settings loqusdb cleared for non-admin\n\n* add tests and more getters\n\n* en passant types and html fixes\n\n* update docstring\n\n* Show all cases, show all vars are apparently user land\n\n* Update CHANGELOG.md\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>\n\n* update comments\n\n* test comments\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>",
"is_bot": false,
"headline": "Fix #6274 - institute settings loqusdb cleared for non-admin (#6275)",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
"committed_at": "2026-05-11T06:18:24Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "90e564fc5f6fac56eee21870570d1706b54ff534",
"body": "…t and typos (#6270)\n\n* Old expected_coverage option removed from docs, blog post, some layout and typos\n\n* Fix #6266 - Update docs on case config custom images (#6267)\n\n* changelog\n\n* like this perhaps\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>",
"is_bot": false,
"headline": "Old expected_coverage option removed from docs, blog post, some layou…",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
"committed_at": "2026-05-07T12:20:46Z",
"body_truncated": false,
"is_coding_agent": false
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{
"oid": "1cdef7999703ee83ad8241a45d73815e3e5f70d7",
"body": "Co-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>",
"is_bot": false,
"headline": "Dowload Ensembl data last when downloading everything (#6269)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-07T11:13:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "96dff2ea1f96059627db830ff47073118fe6aaeb",
"body": null,
"is_bot": false,
"headline": "Fix #6266 - Update docs on case config custom images (#6267)",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
"committed_at": "2026-05-07T07:46:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6b2920dd17bc9466a524adc555186067cdcf8393",
"body": "* Fix #6154 - add CLI command to delete rank model from db\n\n* test text\n\n* Update tests/commands/delete/test_delete_rank_model.py\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>\n\n* Update scout/adapter/mongo/rank_model.py\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>\n\n* DeleteResult type\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmail.com>",
"is_bot": false,
"headline": "Fix #6154 - add CLI command to delete rank model from db (#6262)",
"author_name": "Daniel Nilsson",
"author_login": "dnil",
"committed_at": "2026-05-05T13:24:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e0f97a233646911b69345b8b943f623fa2005ab3",
"body": "* Simplest solution: hide empty categories\n\n* Update scout/server/blueprints/institutes/templates/overview/cases.html\n\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>\n\n* Trigger test\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>\nCo-authored-by: Daniel Nilsson <daniel.k.nilsson@gmail.com>",
"is_bot": false,
"headline": "Hide empty categories of cases on caseS page (#6260)",
"author_name": "Chiara Rasi",
"author_login": "northwestwitch",
"committed_at": "2026-05-05T12:22:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a8291e2b74e0b9b09defb22ace1017d27ec10a4d",
"body": "* Improve merging managed variants description when upserting\n\n* Remove redundant code\n\n* This is broken\n\n* Changelog\n\n---------\n\nCo-authored-by: Chiara Rasi <rasi.chiara@gmacil.com>",
"is_bot": false,
"headline": "Small fix on managed variant upsert (#6259)",
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"metrics": [
{
"key": "maintainer_resilience",
"band": "moderate",
"name": "Maintainer resilience (bus factor)",
"note": null,
"notes": [],
"value": 63,
"inputs": {
"bus_factor": 2,
"contributors_sampled": 33,
"top_contributor_share": 0.377
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"components": [
{
"key": "bus_factor",
"name": "Bus factor",
"detail": "2 contributor(s) cover half of all commits",
"points": 25.2,
"status": "partial",
"details": [
{
"code": "bus_factor",
"params": {
"count": 2
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}
],
"max_points": 54
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{
"key": "commit_distribution",
"name": "Commit distribution",
"detail": "top contributor authored 38% of commits",
"points": 14,
"status": "partial",
"details": [
{
"code": "top_contributor_share",
"params": {
"share": 38
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}
],
"max_points": 22.5
},
{
"key": "contributor_breadth",
"name": "Contributor breadth",
"detail": "33 contributors",
"points": 13.5,
"status": "met",
"details": [
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"code": "contributors_sampled",
"params": {
"count": 33
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}
],
"max_points": 13.5
},
{
"key": "openssf_scorecard_contributors",
"name": "OpenSSF Scorecard: Contributors",
"detail": "project has 15 contributing companies or organizations",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "excellent",
"name": "Issue & PR responsiveness",
"note": null,
"notes": [],
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"inputs": {
"merged_prs": 2732,
"open_issues": 245,
"closed_issues": 3097,
"issue_closed_ratio": 0.927,
"closed_unmerged_prs": 241
},
"components": [
{
"key": "issue_resolution",
"name": "Issue resolution",
"detail": "93% of issues closed",
"points": 43.3,
"status": "partial",
"details": [
{
"code": "issues_closed_share",
"params": {
"share": 93
}
}
],
"max_points": 46.75
},
{
"key": "pr_acceptance",
"name": "PR acceptance",
"detail": "2732/2973 decided PRs merged",
"points": 35.1,
"status": "partial",
"details": [
{
"code": "decided_prs_merged",
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"merged": 2732,
"decided": 2973
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}
],
"max_points": 38.25
},
{
"key": "openssf_scorecard_code_review",
"name": "OpenSSF Scorecard: Code-Review",
"detail": "Found 29/30 approved changesets -- score normalized to 9",
"points": 13.5,
"status": "partial",
"details": [],
"max_points": 15
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]
},
{
"key": "stewardship",
"band": "moderate",
"name": "Ownership & stewardship",
"note": null,
"notes": [],
"value": 69,
"inputs": {
"followers": 96,
"owner_type": "Organization",
"is_verified": null,
"owner_login": "Clinical-Genomics",
"public_repos": 123,
"account_age_days": 4570
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"components": [
{
"key": "ownership_backing",
"name": "Ownership backing",
"detail": "organization-owned",
"points": 30,
"status": "met",
"details": [
{
"code": "owner_organization",
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}
],
"max_points": 30
},
{
"key": "verified_domain",
"name": "Verified domain",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "owner_reach",
"name": "Owner reach",
"detail": "96 followers of Clinical-Genomics",
"points": 14.3,
"status": "partial",
"details": [
{
"code": "owner_followers",
"params": {
"count": 96,
"login": "Clinical-Genomics"
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}
],
"max_points": 25
},
{
"key": "track_record",
"name": "Track record",
"detail": "123 public repos, account ~12 yr old",
"points": 25,
"status": "met",
"details": [
{
"code": "public_repos",
"params": {
"count": 123
}
},
{
"code": "account_age_years",
"params": {
"years": 12
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}
],
"max_points": 25
}
]
},
{
"key": "package_maintenance",
"band": "excellent",
"name": "Package maintenance",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"packages": [
"scout-browser"
],
"ecosystems": "pypi",
"any_deprecated": false,
"min_days_since_publish": 6
},
"components": [
{
"key": "published_resolvable",
"name": "Published & resolvable",
"detail": "1 package(s) on pypi",
"points": 25,
"status": "met",
"details": [
{
"code": "packages_published",
"params": {
"count": 1,
"ecosystems": "pypi"
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}
],
"max_points": 25
},
{
"key": "publish_recency",
"name": "Publish recency",
"detail": "latest publish 6 days ago",
"points": 35,
"status": "met",
"details": [
{
"code": "publish_recency",
"params": {
"days": 6
}
}
],
"max_points": 35
},
{
"key": "version_history",
"name": "Version history",
"detail": "194 published versions",
"points": 20,
"status": "met",
"details": [
{
"code": "published_versions",
"params": {
"count": 194
}
}
],
"max_points": 20
},
{
"key": "not_deprecated",
"name": "Not deprecated",
"detail": "active, not deprecated or yanked",
"points": 20,
"status": "met",
"details": [
{
"code": "package_not_deprecated",
"params": {}
}
],
"max_points": 20
}
]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "excellent",
"name": "Engineering Quality",
"value": 96,
"weight": 0.2,
"metrics": [
{
"key": "engineering_practices",
"band": "excellent",
"name": "Engineering practices",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"has_ci": true,
"has_tests": true,
"has_editorconfig": true,
"has_linter_config": true,
"has_precommit_config": true
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": "9 workflow(s)",
"points": 24,
"status": "met",
"details": [
{
"code": "ci_workflows",
"params": {
"count": 9
}
}
],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 24,
"status": "met",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": null,
"points": 16,
"status": "met",
"details": [],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 9.6,
"status": "met",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 6.4,
"status": "met",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "30 out of 30 merged PRs checked by a CI test -- score normalized to 10",
"points": 20,
"status": "met",
"details": [],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "excellent",
"name": "Documentation",
"note": null,
"notes": [],
"value": 90,
"inputs": {
"topics": [],
"has_wiki": true,
"homepage": "https://clinical-genomics.github.io/scout",
"has_readme": true,
"has_docs_dir": true,
"has_description": true
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 30,
"status": "met",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 25,
"status": "met",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": "https://clinical-genomics.github.io/scout",
"points": 15,
"status": "met",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
},
{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "moderate",
"name": "Security",
"value": 66,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "moderate",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): Branch-Protection, Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"branch_protection",
"signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 65,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 16,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 2,
"scorecard_aggregate": 6.4
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "30 out of 30 merged PRs checked by a CI test -- score normalized to 10",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 29/30 approved changesets -- score normalized to 9",
"points": 6.8,
"status": "partial",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 15 contributing companies or organizations",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no dangerous workflow patterns detected",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "no update tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "30 commit(s) and 27 issue activity found in the last 90 days -- score normalized to 10",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow detected",
"points": 5,
"status": "met",
"details": [],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "SAST tool is run on all commits",
"points": 5,
"status": "met",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file detected",
"points": 2,
"status": "partial",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "detected GitHub workflow tokens with excessive permissions",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "1 existing vulnerabilities detected",
"points": 6.8,
"status": "partial",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "dependency_advisories",
"band": "moderate",
"name": "Dependency advisories",
"note": "Excluded from scoring (no data or not applicable): Indirect dependencies free of known advisories. Remaining weights renormalized. Matched 118 resolved dependencies against OSV. This repository publishes no package the index resolves, so the repository dependency graph was assessed instead. That graph mixes development and test pins with shipped dependencies, so only the declared runtime dependencies are scored; transitive findings are reported as context and excluded from the score. Reachability is not analyzed.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
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}
},
{
"code": "weights_renormalized",
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},
{
"code": "advisories_scope_repository",
"params": {
"assessed": 118
}
},
{
"code": "advisories_repo_graph_caveat",
"params": {}
},
{
"code": "advisories_reachability",
"params": {}
}
],
"value": 69,
"inputs": {
"source": "osv",
"advisories": 2,
"affected_packages": 1,
"assessed_packages": 118,
"unassessed_packages": 0,
"affected_by_severity": "high 1",
"direct_affected_packages": 1
},
"components": [
{
"key": "direct_dependencies_free_of_known_advisories",
"name": "Direct dependencies free of known advisories",
"detail": "1 affected: pdfkit 1.0.0 (high 8.4)",
"points": 11.5,
"status": "partial",
"details": [
{
"code": "advisories_affected",
"params": {
"count": 1,
"packages": "pdfkit 1.0.0 (high 8.4)"
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}
],
"max_points": 35
},
{
"key": "indirect_dependencies_free_of_known_advisories",
"name": "Indirect dependencies free of known advisories",
"detail": "transitive set not separable from development and test dependencies in this scope",
"points": 0,
"status": "excluded",
"details": [
{
"code": "advisories_scope_not_separable",
"params": {}
}
],
"max_points": 25
},
{
"key": "no_advisories_left_outstanding",
"name": "No advisories left outstanding",
"detail": "no advisory has been public longer than 90 days",
"points": 40,
"status": "met",
"details": [
{
"code": "advisories_none_stale",
"params": {
"days": 90
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}
],
"max_points": 40
}
]
},
{
"key": "malicious_dependencies",
"band": "excellent",
"name": "Malicious dependencies",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"source": "osv",
"meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
"packages": [],
"red_flag": false,
"assessed_packages": 118,
"malicious_packages": 0,
"direct_malicious_packages": 0,
"withdrawn_malicious_packages": 0,
"installable_malicious_packages": 0
},
"components": [
{
"key": "no_dependency_reported_as_a_malicious_package",
"name": "No dependency reported as a malicious package",
"detail": "no dependency is reported as a malicious package",
"points": 100,
"status": "met",
"details": [
{
"code": "no_malicious_dependencies",
"params": {}
}
],
"max_points": 100
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "excellent",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
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"Iran",
"North Korea"
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"review_only_matches": 0,
"assessed_self_published_locations": 11
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "moderate",
"name": "AI Readiness",
"value": 53,
"weight": 0,
"metrics": [
{
"key": "ai_agent_context",
"band": "at_risk",
"name": "Agent context & guidance",
"note": null,
"notes": [],
"value": 40,
"inputs": {
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"legible_history_share": 1,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
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"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
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},
{
"key": "legible_commit_history",
"name": "Legible commit history",
"detail": "100 of 100 human commits state their intent (structured subject or explanatory body)",
"points": 40,
"status": "met",
"details": [
{
"code": "legible_history",
"params": {
"legible": 100,
"sampled": 100
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}
],
"max_points": 40
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]
},
{
"key": "ai_verify_loop",
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"name": "Verify loop (build / test / typecheck)",
"note": null,
"notes": [],
"value": 61,
"inputs": {
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"has_tests": true,
"lockfiles": [
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"has_dockerfile": true,
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"bootstrap_files": [
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"typecheck_configs": [],
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"toolchain_manifests": [],
"dependency_bot_commit_share": 0
},
"components": [
{
"key": "one_command_bootstrap",
"name": "One-command bootstrap",
"detail": "Makefile",
"points": 18,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
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}
],
"max_points": 18
},
{
"key": "automated_tests",
"name": "Automated tests",
"detail": null,
"points": 22,
"status": "met",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": null,
"points": 11,
"status": "met",
"details": [],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": "Dockerfile, lockfile",
"points": 10,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "Dockerfile, lockfile"
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}
],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "no agent-authored commits among the last 100",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_authored_commits",
"params": {
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}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "no automated dependency updates observed",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_dependency_automation",
"params": {}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "moderate",
"name": "Code legibility for models",
"note": null,
"notes": [],
"value": 55,
"inputs": {
"primary_language": "HTML",
"largest_source_bytes": 79453,
"source_files_sampled": 566,
"oversized_source_files": 3
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"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "HTML without a type-check config",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_typecheck_config_language",
"params": {
"language": "HTML"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "3/566 source files over 60KB",
"points": 54.7,
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