公开记录
软件健康报告模式 0.26.0 · 指标 1.13.0 · 2026-07-21 23:48 UTC

chapmanb / bcbb

Incubator for useful bioinformatics code, primarily in Python and R

Python · HTML未检测到许可证★ 644 星标⑂ 241 复刻始于 2008年12月在 GitHub 上查看 ↗

chapmanb/bcbb 的健康指数为 100 分中的 34 分,处于「存在风险」区间。 其得分最高的类别是Sustainability & Governance(59/100),最低的是Vitality(10/100)。 最近一次更新在 531 天前。 近期的大部分工作由 1 位贡献者完成。

34
总分 / 100
存在风险

软件健康指数

指标归入加权类别,统一采用 1–100 量表。总体分先取类别加权平均;当公开证据触发高风险司法辖区政策时,评级会按政策调整,并设置 49(有风险)的上限。AI 就绪度不计入总体分。

34
优秀85-100堪称典范;基本满足所有检验标准
良好70-84健康;仅有轻微不足
中等50-69可接受,但存在明显不足;建议进行审查
存在风险30-49存在重大薄弱环节;采用时应保持审慎
危急1-29问题严重(项目被弃置、仅有单一维护者、缺乏基本工程规范)
活力社区与采用可持续性与治理工程质量安全AI 就绪度

评分画像

每条轴代表一个类别。形状比平均值更重要——健康的对象会填满整个图形,而“一峰一谷”式画像意味着某一维度的优势正掩盖另一维度的风险。

Abandonment Policy applies a 85% multiplier to weighted overall health.

所有权

Brad Chapman个人账户
982 关注者121 个公开仓库始于 2008年12月Ginkgo Bioworks

该仓库由个人账户拥有。相较于组织支持的项目,单一所有者项目的延续性风险更高。

软件包生态系统

注册表软件包版本月下载量版本数最近发布
PyPIbcbio-gff0.7.1-15904 天前
PyPIbcbio-phyloblast指向其他仓库——不计分0.1.2-34891 天前

按类别列示的指标

活力

项目是否仍有生命——是否仍在编写代码,是否仍在发布版本?

10危急 · 占总体的 22%
评分方式
0/36推送新近度 — 最近一次推送于 531 天前
0/36提交节奏 — 52 周中有 0 周有提交
0/18提交量 — 最近一年 0 次提交
0/10OpenSSF Scorecard:Maintained — 0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0
所用输入
commits_last_year0
human_commit_share1
days_since_last_push531
active_weeks_last_year0

发布纪律

24危急
评分方式
16.2/27有发布版本 — 2 个版本标签(无 GitHub 发布版本)
0/36发布时效 — 最近一次发布版本于 1,749 天前
5.4/27发布节奏 — 约每 3,164.1 天发布一次
0/10OpenSSF Scorecard:Signed-Releases — 无数据
所用输入
releases_count2
latest_release_tagv0.6.7
releases_from_tags
days_since_latest_release1,749
mean_days_between_releases3,164.1
已排除计分(无数据或不适用):OpenSSF Scorecard:Signed-Releases。 其余权重已重新归一化。

社区与采用

项目是否拥有用户、下载量与关注度,并具备欢迎贡献者参与的配置?

52中等 · 占总体的 18%
评分方式
45.6/60星标 — 644 个星标
19.8/25复刻 — 241 个复刻
9.6/15关注者 — 55 位关注者
所用输入
forks241
stars644
watchers55
growth_stateorganic
growth_factor_pct100

社区健康

25危急
评分方式
22.5/22.5README
0/22.5许可证 — 未检测到许可证文件
0/18CONTRIBUTING 指南
0/13.5行为准则
0/7.2议题模板
0/6.3PR 模板
所用输入
has_readme
has_license
has_contributing
has_issue_template
has_code_of_conduct
has_pull_request_template

可持续性与治理

项目能否在其成员之外延续——巴士系数、响应能力、由谁支持,以及软件包的维护状况?

59中等 · 占总体的 24%
评分方式
9/54巴士系数 — 1 位贡献者贡献了半数提交
2.2/22.5提交分布 — 头号贡献者编写了 90% 的提交
13.5/13.5贡献者广度 — 25 位贡献者
10/10OpenSSF Scorecard:Contributors — project has 25 contributing companies or organizations
所用输入
bus_factor1
contributors_sampled25
top_contributor_share0.904
评分方式
36.2/46.8议题解决 — 78% 的议题已关闭
26.3/38.3PR 接受 — 已裁定的 PR 中 46/67 已合并
6/15OpenSSF Scorecard:Code-Review — Found 9/20 approved changesets -- score normalized to 4
所用输入
merged_prs46
open_issues18
closed_issues62
issue_closed_ratio0.775
closed_unmerged_prs21
评分方式
10/30所有权背书 — 个人(用户)账户
0/20已验证域名 — 不适用于个人账户
21.5/25所有者影响力 — chapmanb 有 982 位关注者
25/25既往记录 — 121 个公开仓库,账户约 17 年
所用输入
followers982
owner_typeUser
is_verified
owner_loginchapmanb
public_repos121
account_age_days6,433
已排除计分(无数据或不适用):已验证域名。 其余权重已重新归一化。
评分方式
25/25已发布且可解析 — pypi 上有 1 个软件包
4/35发布时效 — 最近一次发布于 904 天前
20/20版本历史 — 15 个已发布版本
20/20未被弃用 — 活跃,未被弃用或撤回
所用输入
packagesbcbio-gff
ecosystemspypi
any_deprecated
min_days_since_publish904

工程质量

基础的工程与文档实践是否到位?

36存在风险 · 占总体的 20%

工程实践

24危急
评分方式
0/24CI 工作流
24/24存在测试
0/16Linter 配置
0/9.6Pre-commit 钩子
0/6.4.editorconfig
0/20OpenSSF Scorecard:CI-Tests — 0 out of 9 merged PRs checked by a CI test -- score normalized to 0
所用输入
has_ci
has_tests
has_editorconfig
has_linter_config
has_precommit_config

文档

55中等
评分方式
30/30README
0/25文档目录
15/15文档 / 主页站点 — http://bcbio.wordpress.com
10/10仓库描述
0/10主题标签
0/10Wiki
所用输入
topics
has_wiki
homepagehttp://bcbio.wordpress.com
has_readme
has_docs_dir
has_description

安全

可见的安全与供应链实践是否稳固,且不存在未解决的高风险司法辖区暴露?

43存在风险 · 占总体的 16%

安全态势

29危急
评分方式
7.5/7.5Binary-Artifacts — no binaries found in the repo
0/7.5Branch-Protection — branch protection not enabled on development/release branches
0/2.5CI-Tests — 0 out of 9 merged PRs checked by a CI test -- score normalized to 0
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
3/7.5Code-Review — Found 9/20 approved changesets -- score normalized to 4
2.5/2.5Contributors — project has 25 contributing companies or organizations
0/10Dangerous-Workflow — 无数据
0/7.5Dependency-Update-Tool — no update tool detected
0/5Fuzzing — project is not fuzzed
0/2.5许可证 — license file not detected
0/7.5Maintained — 0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0
0/5Packaging — 无数据
0/5Pinned-Dependencies — 无数据
0/5SAST — SAST tool is not run on all commits -- score normalized to 0
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — 无数据
0/7.5Token-Permissions — 无数据
7.5/7.5Vulnerabilities — 0 existing vulnerabilities detected
所用输入
sourceopenssf_scorecard
checks_evaluated13
scorecard_versionv5.5.0
checks_inconclusive5
scorecard_aggregate2.9
已排除计分(无数据或不适用):dangerous_workflow, packaging, pinned_dependencies, signed_releases, token_permissions。 其余权重已重新归一化。
评分方式
35/35直接依赖不含已知公告 — 没有直接依赖携带已知公告
25/25间接依赖不含已知公告 — 没有间接依赖携带已知公告
0/40没有长期未处理的公告 — 没有公告带有发布日期
所用输入
sourceosv
advisories0
affected_packages0
assessed_packages3
unassessed_packages0
affected_by_severitynone
direct_affected_packages0
已排除计分(无数据或不适用):没有长期未处理的公告。 其余权重已重新归一化。 比对的是 pypi:bcbio-gff@0.7.1 的运行时依赖闭包——安装已发布的软件包时真正被拉取进来的内容——共 3 个软件包。 未对可达性进行分析。

AI 就绪度

该仓库在多大程度上具备与 AI 编码代理协同开发与维护的条件?这是一枚独立的实验性徽章——权重为 0.0,因此单独呈现,不影响总体健康评分。

37存在风险 · 占总体的 0%
评分方式
0/45代理指令 — 没有 CLAUDE.md / AGENTS.md / 编辑器规则
0/15机器可读文档(llms.txt)
16/40可读的提交历史 — 100 次人类提交中有 30 次说明了意图(结构化标题或解释性正文)
所用输入
has_llms_txt
legible_history_share0.3
agent_instruction_files
agent_instruction_max_bytes
评分方式
18/18一条命令的引导启动 — abstracts/bosc_2015_bcbio_prioritization/Makefile, abstracts/bosc_2016_bcbio_cwl/Makefile, abstracts/bosc_2017_bcbio_integration/Makefile, abstracts/bosc_2018_bcbio_validation/Makefile, abstracts/hackathon_workshop_2017/Makefile, nextgen/docs/Makefile, papers/bcbio-nextgen/Makefile
22/22自动化测试
0/11Lint / 格式化配置
0/11静态类型检查
0/10可复现环境
0/10已体现的代理实践 — 最近 100 次提交中没有代理编写的提交
0/8自动化维护 — 未观察到自动依赖更新
0/10OpenSSF Scorecard:Pinned-Dependencies — 无数据
所用输入
has_nix
has_tests
lockfiles
has_dockerfile
typed_language
bootstrap_filesabstracts/bosc_2015_bcbio_prioritization/Makefile, abstracts/bosc_2016_bcbio_cwl/Makefile, abstracts/bosc_2017_bcbio_integration/Makefile, abstracts/bosc_2018_bcbio_validation/Makefile, abstracts/hackathon_workshop_2017/Makefile, nextgen/docs/Makefile, papers/bcbio-nextgen/Makefile
has_devcontainer
has_linter_config
typecheck_configs
agent_commit_share0
toolchain_manifests
dependency_bot_commit_share0
已排除计分(无数据或不适用):OpenSSF Scorecard:Pinned-Dependencies。 其余权重已重新归一化。
评分方式
0/45可类型检查的代码 — Python,未配置类型检查
54.7/55可控的文件大小 — 采样的 186 个源文件中有 1 个超过 60KB
所用输入
primary_languagePython
largest_source_bytes70,319
source_files_sampled186
oversized_source_files1

机器可读接口

40存在风险
评分方式
0/40API 模式(OpenAPI/GraphQL/proto)
0/20MCP 服务器
40/40可运行示例 — examples, notebooks
所用输入
example_dirsexamples, notebooks
has_mcp_signal
api_schema_files

关键数据

644GitHub 星标
25贡献者
0最近 12 个月提交数
531距最近推送天数
2发布版本数
1巴士系数(bus factor)
18开放议题
PyPI软件包生态系统数

数据采集警告

  • pypi package 'bcbio-phyloblast' points at a different repository (http://bcbio.wordpress.com); excluded from ecosystem scoring

更多细节

Star 与 Fork 历史 644 ★ / 241 ⇿
644Star
241Fork
2发布

每颗 star 和每个 fork 的添加时间,来自 GitHub 并按天汇总。累计增长位于其构成来源——每日新增——的正上方,二者可相互对照:稳定的自然增长与短暂的突增形态截然不同。当这一差别可被衡量时,它会作为增长真实性予以报告。

0125250375500625750643227202008-122017-092026-06
主版本 0次版本 1修订 1

每个点涵盖 17 天。

OpenSSF Scorecard 2.9 / 10
2.9综合

来自开源项目 OpenSSF Scorecard 的独立、工具无关的安全评估。每项检查奖励的是安全实践本身,而非特定供应商的工具。Scorecard 无法判定的检查项标记为 不适用,并从安全评分中剔除(绝不按零分计)。Scorecard v5.5.0 · 2026-07-21 23:47 UTC

10Binary-Artifactsno binaries found in the repo
0Branch-Protectionbranch protection not enabled on development/release branches
0CI-Tests0 out of 9 merged PRs checked by a CI test -- score normalized to 0
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
4Code-ReviewFound 9/20 approved changesets -- score normalized to 4
10Contributorsproject has 25 contributing companies or organizations
不适用Dangerous-Workflowno workflows found
0Dependency-Update-Toolno update tool detected
0Fuzzingproject is not fuzzed
0Licenselicense file not detected
0Maintained0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0
不适用Packagingpackaging workflow not detected
不适用Pinned-Dependenciesno dependencies found
0SASTSAST tool is not run on all commits -- score normalized to 0
0Security-Policysecurity policy file not detected
不适用Signed-Releasesno releases found
不适用Token-PermissionsNo tokens found
10Vulnerabilities0 existing vulnerabilities detected
全部依赖 3

来自 GitHub 依赖图的完整解析依赖集合:0 个直接依赖与 3 个间接(传递)软件包。仓库提交锁文件时,传递闭包才是完整的。

注册表软件包版本关系
PyPIbiopython间接
PyPIpyyaml间接
PyPIsix间接
依赖安全公告 0

安装 pypi:bcbio-gff@0.7.1 会引入 3 个包(直接与传递):其中 0 个存在已知公告,0 个为直接依赖。

没有已知公告影响已评估的依赖。

公告表示依赖图中记录的版本落入某条公告的受影响范围。可达性未经分析,且依赖图包含开发与测试的版本固定——某项发现可能只涉及工具链而非交付的软件。

原始 JSON 报告 机器可读
{
  "data": {
    "repo": {
      "topics": [],
      "is_fork": false,
      "size_kb": 83224,
      "has_wiki": false,
      "homepage": "http://bcbio.wordpress.com",
      "languages": {
        "R": 14547,
        "CSS": 90068,
        "TeX": 142313,
        "HTML": 248867,
        "SCSS": 16872,
        "Shell": 2356,
        "Python": 850665,
        "Clojure": 9818,
        "Makefile": 6313,
        "JavaScript": 88232,
        "Jupyter Notebook": 5429
      },
      "pushed_at": "2025-02-05T14:20:51Z",
      "created_at": "2008-12-09T21:05:22Z",
      "owner_type": "User",
      "updated_at": "2026-07-09T17:16:49Z",
      "description": "Incubator for useful bioinformatics code, primarily in Python and R",
      "is_archived": false,
      "is_disabled": false,
      "license_spdx": null,
      "default_branch": "master",
      "license_spdx_raw": null,
      "primary_language": "Python",
      "significant_languages": [
        "Python",
        "HTML"
      ]
    },
    "owner": {
      "blog": "http://bcb.io",
      "name": "Brad Chapman",
      "type": "User",
      "login": "chapmanb",
      "company": "Ginkgo Bioworks",
      "location": "Boston, MA",
      "followers": 982,
      "avatar_url": "https://avatars.githubusercontent.com/u/39391?v=4",
      "created_at": "2008-12-09T18:45:45Z",
      "is_verified": null,
      "public_repos": 121,
      "account_age_days": 6433
    },
    "license": {
      "state": "absent",
      "spdx_id": null,
      "raw_spdx": null,
      "file_present": false,
      "scorecard_found": false,
      "profile_has_license": false
    },
    "activity": {
      "releases": [
        {
          "tag": "v0.6.7",
          "kind": "patch",
          "published_at": "2021-10-06T13:26:49Z"
        },
        {
          "tag": "v0.6.0",
          "kind": "minor",
          "published_at": "2013-02-06T10:19:08Z"
        }
      ],
      "recent_commits": [
        {
          "oid": "320353c64ee0dc938113ca36f19b2e6de6b597be",
          "body": "fix: Suppress warning about invalid escape sequence",
          "is_bot": false,
          "headline": "Merge pull request #147 from phaverty-ginkgo/suppress_regex_warning",
          "author_name": "Rory Kirchner",
          "author_login": "roryk",
          "committed_at": "2025-02-05T14:20:51Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6fca8aa5aabbd7e3d5ff63f3d9f2afc73e9584b7",
          "body": null,
          "is_bot": false,
          "headline": "Suppress warning about invalid excape sequence",
          "author_name": "Peter Haverty",
          "author_login": "phaverty-ginkgo",
          "committed_at": "2025-02-04T23:41:08Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9c6d83ee3f0491f647a9ecd5947b13c99b478f26",
          "body": null,
          "is_bot": false,
          "headline": "Version bump: bcbio-gff-v0.7.1",
          "author_name": "chapmanb",
          "author_login": "chapmanb",
          "committed_at": "2024-01-29T13:59:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "03e96caa2b91cce22b6d05cf5d5f473cccbb7eb2",
          "body": null,
          "is_bot": false,
          "headline": "Do not smother Biopython deprecation warnings. Fixes #139",
          "author_name": "chapmanb",
          "author_login": "chapmanb",
          "committed_at": "2024-01-29T13:45:00Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "dd0dd8fa6732ff48afc38a7f05aaa32d37010761",
          "body": "updates for biopython 1.82",
          "is_bot": false,
          "headline": "Merge pull request #141 from fubar2/master",
          "author_name": "Brad Chapman",
          "author_login": "chapmanb",
          "committed_at": "2024-01-29T13:23:43Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0db78650b163166337328ea4613ee6a0d9ccc5fa",
          "body": "docs: Fix a few typos",
          "is_bot": false,
          "headline": "Merge pull request #135 from timgates42/bugfix_typos",
          "author_name": "Brad Chapman",
          "author_login": "chapmanb",
          "committed_at": "2024-01-29T13:21:47Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "eec72c3faca1e5e9e4e48dbf46d396a9045baa3b",
          "body": "fix nofuzzy_start/end deprecation - replaced with start and end\nmove all strands in seqfeatures into simplelocations\nPasses tests !",
          "is_bot": false,
          "headline": "updates for biopython 1.86",
          "author_name": "fubar2",
          "author_login": "fubar2",
          "committed_at": "2024-01-02T23:12:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "81442c07173aaa59cbc1be33dd4a6e0eee87c5f6",
          "body": "Fix error with biopython 1.81",
          "is_bot": false,
          "headline": "Merge pull request #137 from abretaud/unknownseq",
          "author_name": "Brad Chapman",
          "author_login": "chapmanb",
          "committed_at": "2023-03-13T12:55:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8a36af0c1af2c2b39e841cea2496f7a367ffdae5",
          "body": null,
          "is_bot": false,
          "headline": "Fix error with biopython 1.81",
          "author_name": "Anthony Bretaudeau",
          "author_login": "abretaud",
          "committed_at": "2023-02-15T15:53:12Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "63224f4b106c49dcfa25cf73406dcaa047a77758",
          "body": "There are small typos in:\n- posts/conferences/bosc2018_day1a.md\n- posts/seminars/tumor_heterogeneity_carter.md\n\nFixes:\n- Should read `suppressors` rather than `supressors`.\n- Should read `service` rather than `serivce`.\n\nSigned-off-by: Tim Gates <tim.gates@iress.com>",
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        "key": "engineering",
        "band": "at_risk",
        "name": "Engineering Quality",
        "value": 36,
        "weight": 0.2,
        "metrics": [
          {
            "key": "engineering_practices",
            "band": "critical",
            "name": "Engineering practices",
            "note": null,
            "notes": [],
            "value": 24,
            "inputs": {
              "has_ci": false,
              "has_tests": true,
              "has_editorconfig": false,
              "has_linter_config": false,
              "has_precommit_config": false
            },
            "components": [
              {
                "key": "ci_workflows",
                "name": "CI workflows",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 24
              },
              {
                "key": "tests_present",
                "name": "Tests present",
                "detail": null,
                "points": 24,
                "status": "met",
                "details": [],
                "max_points": 24
              },
              {
                "key": "linter_config",
                "name": "Linter config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 16
              },
              {
                "key": "pre_commit_hooks",
                "name": "Pre-commit hooks",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 9.6
              },
              {
                "key": "editorconfig",
                "name": ".editorconfig",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.4
              },
              {
                "key": "openssf_scorecard_ci_tests",
                "name": "OpenSSF Scorecard: CI-Tests",
                "detail": "0 out of 9 merged PRs checked by a CI test -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              }
            ]
          },
          {
            "key": "documentation",
            "band": "moderate",
            "name": "Documentation",
            "note": null,
            "notes": [],
            "value": 55,
            "inputs": {
              "topics": [],
              "has_wiki": false,
              "homepage": "http://bcbio.wordpress.com",
              "has_readme": true,
              "has_docs_dir": false,
              "has_description": true
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 30,
                "status": "met",
                "details": [],
                "max_points": 30
              },
              {
                "key": "documentation_directory",
                "name": "Documentation directory",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 25
              },
              {
                "key": "documentation_homepage_site",
                "name": "Documentation / homepage site",
                "detail": "http://bcbio.wordpress.com",
                "points": 15,
                "status": "met",
                "details": [],
                "max_points": 15
              },
              {
                "key": "repository_description",
                "name": "Repository description",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "topics",
                "name": "Topics",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              },
              {
                "key": "wiki",
                "name": "Wiki",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
      },
      {
        "key": "security",
        "band": "at_risk",
        "name": "Security",
        "value": 43,
        "weight": 0.16,
        "metrics": [
          {
            "key": "security_posture",
            "band": "critical",
            "name": "Security posture",
            "note": "Excluded from scoring (no data or not applicable): Dangerous-Workflow, Packaging, Pinned-Dependencies, Signed-Releases, Token-Permissions. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "dangerous_workflow",
                    "packaging",
                    "pinned_dependencies",
                    "signed_releases",
                    "token_permissions"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 29,
            "inputs": {
              "source": "openssf_scorecard",
              "checks_evaluated": 13,
              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 5,
              "scorecard_aggregate": 2.9
            },
            "components": [
              {
                "key": "binary_artifacts",
                "name": "Binary-Artifacts",
                "detail": "no binaries found in the repo",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "branch protection not enabled on development/release branches",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "ci_tests",
                "name": "CI-Tests",
                "detail": "0 out of 9 merged PRs checked by a CI test -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "code_review",
                "name": "Code-Review",
                "detail": "Found 9/20 approved changesets -- score normalized to 4",
                "points": 3,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 25 contributing companies or organizations",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no workflows found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "no update tool detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file not detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow not detected",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
                "detail": "no dependencies found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
                "detail": "SAST tool is not run on all commits -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "security_policy",
                "name": "Security-Policy",
                "detail": "security policy file not detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "signed_releases",
                "name": "Signed-Releases",
                "detail": "no releases found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "No tokens found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "0 existing vulnerabilities detected",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              }
            ]
          },
          {
            "key": "dependency_advisories",
            "band": "excellent",
            "name": "Dependency advisories",
            "note": "Excluded from scoring (no data or not applicable): No advisories left outstanding. Remaining weights renormalized. Matched the pypi:bcbio-gff@0.7.1 runtime dependency closure — what installing the published package pulls in — 3 packages. Reachability is not analyzed.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "no_advisories_left_outstanding"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              },
              {
                "code": "advisories_scope_published",
                "params": {
                  "package": "pypi:bcbio-gff@0.7.1",
                  "assessed": 3
                }
              },
              {
                "code": "advisories_reachability",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "source": "osv",
              "advisories": 0,
              "affected_packages": 0,
              "assessed_packages": 3,
              "unassessed_packages": 0,
              "affected_by_severity": "none",
              "direct_affected_packages": 0
            },
            "components": [
              {
                "key": "direct_dependencies_free_of_known_advisories",
                "name": "Direct dependencies free of known advisories",
                "detail": "no direct dependency carries a known advisory",
                "points": 35,
                "status": "met",
                "details": [
                  {
                    "code": "no_direct_advisories",
                    "params": {}
                  }
                ],
                "max_points": 35
              },
              {
                "key": "indirect_dependencies_free_of_known_advisories",
                "name": "Indirect dependencies free of known advisories",
                "detail": "no indirect dependency carries a known advisory",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "no_indirect_advisories",
                    "params": {}
                  }
                ],
                "max_points": 25
              },
              {
                "key": "no_advisories_left_outstanding",
                "name": "No advisories left outstanding",
                "detail": "no advisory carries a publication date",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "advisories_no_publication_date",
                    "params": {}
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "malicious_dependencies",
            "band": "excellent",
            "name": "Malicious dependencies",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "source": "osv",
              "meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
              "packages": [],
              "red_flag": false,
              "assessed_packages": 3,
              "malicious_packages": 0,
              "direct_malicious_packages": 0,
              "withdrawn_malicious_packages": 0,
              "installable_malicious_packages": 0
            },
            "components": [
              {
                "key": "no_dependency_reported_as_a_malicious_package",
                "name": "No dependency reported as a malicious package",
                "detail": "no dependency is reported as a malicious package",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "no_malicious_dependencies",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          },
          {
            "key": "high_risk_jurisdiction_exposure",
            "band": "excellent",
            "name": "High-Risk Jurisdiction Exposure",
            "note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
            "notes": [
              {
                "code": "jurisdiction_evidence_limits",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "meaning": "self-published location evidence; not nationality or citizenship",
              "red_flag": false,
              "exposures": [],
              "policy_countries": [
                "Russia",
                "Iran",
                "North Korea"
              ],
              "review_only_matches": 0,
              "assessed_self_published_locations": 19
            },
            "components": [
              {
                "key": "policy_exposure_multiplier",
                "name": "Policy exposure multiplier",
                "detail": "no confirmed policy-scope location match",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "jurisdiction_no_match",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "at_risk",
        "name": "AI Readiness",
        "value": 37,
        "weight": 0,
        "metrics": [
          {
            "key": "ai_agent_context",
            "band": "critical",
            "name": "Agent context & guidance",
            "note": null,
            "notes": [],
            "value": 16,
            "inputs": {
              "has_llms_txt": false,
              "legible_history_share": 0.3,
              "agent_instruction_files": [],
              "agent_instruction_max_bytes": null
            },
            "components": [
              {
                "key": "agent_instructions",
                "name": "Agent instructions",
                "detail": "no CLAUDE.md / AGENTS.md / editor rules",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_instructions",
                    "params": {}
                  }
                ],
                "max_points": 45
              },
              {
                "key": "machine_readable_docs_llms_txt",
                "name": "Machine-readable docs (llms.txt)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "legible_commit_history",
                "name": "Legible commit history",
                "detail": "30 of 100 human commits state their intent (structured subject or explanatory body)",
                "points": 16,
                "status": "partial",
                "details": [
                  {
                    "code": "legible_history",
                    "params": {
                      "legible": 30,
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "ai_verify_loop",
            "band": "at_risk",
            "name": "Verify loop (build / test / typecheck)",
            "note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Pinned-Dependencies. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "openssf_scorecard_pinned_dependencies"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 44,
            "inputs": {
              "has_nix": false,
              "has_tests": true,
              "lockfiles": [],
              "has_dockerfile": false,
              "typed_language": false,
              "bootstrap_files": [
                "abstracts/bosc_2015_bcbio_prioritization/Makefile",
                "abstracts/bosc_2016_bcbio_cwl/Makefile",
                "abstracts/bosc_2017_bcbio_integration/Makefile",
                "abstracts/bosc_2018_bcbio_validation/Makefile",
                "abstracts/hackathon_workshop_2017/Makefile",
                "nextgen/docs/Makefile",
                "papers/bcbio-nextgen/Makefile"
              ],
              "has_devcontainer": false,
              "has_linter_config": false,
              "typecheck_configs": [],
              "agent_commit_share": 0,
              "toolchain_manifests": [],
              "dependency_bot_commit_share": 0
            },
            "components": [
              {
                "key": "one_command_bootstrap",
                "name": "One-command bootstrap",
                "detail": "abstracts/bosc_2015_bcbio_prioritization/Makefile, abstracts/bosc_2016_bcbio_cwl/Makefile, abstracts/bosc_2017_bcbio_integration/Makefile, abstracts/bosc_2018_bcbio_validation/Makefile, abstracts/hackathon_workshop_2017/Makefile, nextgen/docs/Makefile, papers/bcbio-nextgen/Makefile",
                "points": 18,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "abstracts/bosc_2015_bcbio_prioritization/Makefile, abstracts/bosc_2016_bcbio_cwl/Makefile, abstracts/bosc_2017_bcbio_integration/Makefile, abstracts/bosc_2018_bcbio_validation/Makefile, abstracts/hackathon_workshop_2017/Makefile, nextgen/docs/Makefile, papers/bcbio-nextgen/Makefile"
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "automated_tests",
                "name": "Automated tests",
                "detail": null,
                "points": 22,
                "status": "met",
                "details": [],
                "max_points": 22
              },
              {
                "key": "lint_format_config",
                "name": "Lint / format config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
              },
              {
                "key": "static_type_checking",
                "name": "Static type checking",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
              },
              {
                "key": "reproducible_environment",
                "name": "Reproducible environment",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              },
              {
                "key": "demonstrated_agent_practice",
                "name": "Demonstrated agent practice",
                "detail": "no agent-authored commits among the last 100",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_authored_commits",
                    "params": {
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "automated_maintenance",
                "name": "Automated maintenance",
                "detail": "no automated dependency updates observed",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_dependency_automation",
                    "params": {}
                  }
                ],
                "max_points": 8
              },
              {
                "key": "openssf_scorecard_pinned_dependencies",
                "name": "OpenSSF Scorecard: Pinned-Dependencies",
                "detail": "no dependencies found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 10
              }
            ]
          },
          {
            "key": "ai_code_legibility",
            "band": "moderate",
            "name": "Code legibility for models",
            "note": null,
            "notes": [],
            "value": 55,
            "inputs": {
              "primary_language": "Python",
              "largest_source_bytes": 70319,
              "source_files_sampled": 186,
              "oversized_source_files": 1
            },
            "components": [
              {
                "key": "type_checkable_code",
                "name": "Type-checkable code",
                "detail": "Python without a type-check config",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_typecheck_config_language",
                    "params": {
                      "language": "Python"
                    }
                  }
                ],
                "max_points": 45
              },
              {
                "key": "manageable_file_sizes",
                "name": "Manageable file sizes",
                "detail": "1/186 source files over 60KB",
                "points": 54.7,
                "status": "partial",
                "details": [
                  {
                    "code": "oversized_source_files",
                    "params": {
                      "kb": 60,
                      "sampled": 186,
                      "oversized": 1
                    }
                  }
                ],
                "max_points": 55
              }
            ]
          },
          {
            "key": "ai_interfaces",
            "band": "at_risk",
            "name": "Machine-readable interfaces",
            "note": null,
            "notes": [],
            "value": 40,
            "inputs": {
              "example_dirs": [
                "examples",
                "notebooks"
              ],
              "has_mcp_signal": false,
              "api_schema_files": []
            },
            "components": [
              {
                "key": "api_schema_openapi_graphql_proto",
                "name": "API schema (OpenAPI/GraphQL/proto)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 40
              },
              {
                "key": "mcp_server",
                "name": "MCP server",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "runnable_examples",
                "name": "Runnable examples",
                "detail": "examples, notebooks",
                "points": 40,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "examples, notebooks"
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          }
        ],
        "description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
      }
    ],
    "metrics_version": "1.13.0"
  },
  "warnings": [
    "pypi package 'bcbio-phyloblast' points at a different repository (http://bcbio.wordpress.com); excluded from ecosystem scoring"
  ],
  "report_type": "repository",
  "generated_at": "2026-07-21T23:48:23.672955Z",
  "schema_version": "0.26.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/c/chapmanb/bcbb.svg",
  "full_name": "chapmanb/bcbb",
  "license_state": "absent",
  "license_spdx": null
}

评分是信号,而非担保。 评分反映的是 GitHub 上公开可见的实践——不是代码审计,也不是安全保证。

缺失数据将被剔除并重新归一化权重,绝不按零分计。方法论已版本化并公开:指标 v1.13.0、模式 v0.26.0—— 完整方法论 · 指标知识库.

单项结果在整体记录中的位置: 汇总统计PyPI.