Öffentliches Register
Software-GesundheitsberichtSchema 0.11.0 · Metriken 1.13.0 · 2026-07-15 13:16 UTC

the-omics-os / lobster

The self-evolving agentic framework for bioinformatics

PythonEigene Lizenz★ 42 Sterne⑂ 9 Forksseit Aug. 2025Auf GitHub ansehen ↗

the-omics-os/lobster erreicht einen Gesundheitsindex von 60 von 100 und liegt damit im Bereich Mittel. Am stärksten schneidet es bei Engineering Quality (81/100) ab, am schwächsten bei Security (34/100). Zuletzt vor 5 Tagen aktualisiert. Ein einzelner Mitwirkender trägt den Großteil der jüngsten Arbeit.

60
gesamt / 100
Mittel

Software-Gesundheitsindex

Metriken werden auf einer Skala von 1–100 in gewichtete Kategorien gruppiert. Der Gesamtwert beginnt als ihr Mittel; sobald öffentliche Evidenz die Richtlinie für Hochrisikojurisdiktionen auslöst, wird die Bewertung angepasst und erhält die Obergrenze 49 (Gefährdet). AI Readiness liegt außerhalb.

60
Exzellent85-100Vorbildlich; erfüllt im Wesentlichen alle geprüften Kriterien
Gut70-84Gesund; geringfügige Lücken
Mittel50-69Akzeptabel mit deutlichen Lücken; Überprüfung empfohlen
Gefährdet30-49Erhebliche Schwächen; eine Übernahme erfordert Vorsicht
Kritisch1-29Schwerwiegende Probleme (aufgegeben, nur ein Maintainer, keine Hygiene)
VitalitätCommunity &VerbreitungNachhaltigkeit &GovernanceEngineering-QualitätSicherheitAI Readiness

Bewertungsprofil

Jede Achse ist eine Kategorie. Die Form zählt mehr als der Durchschnitt — ein gesundes Projekt füllt die gesamte Fläche, während ein Profil aus Spitzen und Kratern bedeutet, dass Stärke in einer Dimension Risiken in einer anderen verdeckt.

Eigentümerschaft

omics-osOrganisation
14 Follower9 öffentliche Reposseit Aug. 2025

Dieses Repository wird von einer Organisation getragen — geteilte, rechenschaftspflichtige Trägerschaft, die jeden einzelnen Maintainer überdauern kann.

Paket-Ökosysteme

RegistryPaketVersionDownloads / MonatVersionenZuletzt veröffentlichtTags
PyPIlobster-ai1.1.419-58vor 12 Tagenbioinformaticsrna-seqsingle-cellaimachine-learningdata-analysisgenomics

Metriken nach Kategorie

Vitalität

Lebt das Projekt — wird Code geschrieben und werden Releases ausgeliefert?

80Gut · 22 % des Gesamtindex
Wie die Bewertung erfolgt
36/36Push-Aktualität — letzter Push vor 5 Tagen
9/36Commit-Rhythmus — 13/52 Wochen mit Commits
18/18Commit-Volumen — 814 Commits im letzten Jahr
10/10OpenSSF Scorecard: Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
Verwendete Eingangsdaten
commits_last_year814
human_commit_share
days_since_last_push5
active_weeks_last_year13
Wie die Bewertung erfolgt
27/27Liefert Releases aus — 56 Releases veröffentlicht
36/36Release-Aktualität — letztes Release vor 12 Tagen
27/27Release-Rhythmus — ein Release etwa alle 7,6 Tage
0/10OpenSSF Scorecard: Signed-Releases — Project has not signed or included provenance with any releases.
Verwendete Eingangsdaten
releases_count56
latest_release_tagv1.1.419
releases_from_tagsnein
days_since_latest_release12
mean_days_between_releases7,6

Community & Verbreitung

Hat das Projekt Nutzer, Downloads, Aufmerksamkeit und ein einladendes Umfeld für Beitragende?

48Gefährdet · 18 % des Gesamtindex
Wie die Bewertung erfolgt
26.2/60Stars — 42 Stars
7.5/25Forks — 9 Forks
0/15Watcher — 0 Watcher
Verwendete Eingangsdaten
forks9
stars42
watchers0
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history
Wie die Bewertung erfolgt
22.5/22.5README
16.9/22.5Lizenz — Lizenzdatei vorhanden, keine anerkannte Lizenz
18/18CONTRIBUTING-Leitfaden
0/13.5Verhaltenskodex
0/7.2Issue-Vorlage
0/6.3PR-Vorlage
Verwendete Eingangsdaten
has_readmeja
has_licenseja
has_contributingja
has_issue_templatenein
has_code_of_conductnein
has_pull_request_templatenein

Nachhaltigkeit & Governance

Überdauert das Projekt die Menschen, die es tragen — Bus-Faktor, Reaktionsfähigkeit, Trägerschaft und Paketpflege?

52Mittel · 24 % des Gesamtindex
Wie die Bewertung erfolgt
9/54Bus-Faktor — 1 Beitragende decken die Hälfte aller Commits ab
0/22.5Commit-Verteilung — wichtigste beitragende Person verfasste 100 % der Commits
2.7/13.5Breite der Beitragenden — 2 Beitragende
3/10OpenSSF Scorecard: Contributors — project has 1 contributing companies or organizations -- score normalized to 3
Verwendete Eingangsdaten
bus_factor1
contributors_sampled2
top_contributor_share0,998
Wie die Bewertung erfolgt
40.1/46.8Issue-Lösungsquote — 86 % der Issues geschlossen
22.9/38.3PR-Annahme — 6/10 entschiedene PRs gemergt
0/15OpenSSF Scorecard: Code-Review — Found 0/30 approved changesets -- score normalized to 0
Verwendete Eingangsdaten
merged_prs6
open_issues1
closed_issues6
issue_closed_ratio0,857
closed_unmerged_prs4
Wie die Bewertung erfolgt
30/30Organisatorische Trägerschaft — im Besitz einer Organisation
0/20Verifizierte Domain
8.5/25Reichweite des Inhabers — 14 Follower von the-omics-os
9.1/25Kontohistorie — 9 öffentliche Repos, Kontoalter ca. 0 Jahre
Verwendete Eingangsdaten
followers14
owner_typeOrganization
is_verified
owner_loginthe-omics-os
public_repos9
account_age_days336

Paketpflege

100Exzellent
Wie die Bewertung erfolgt
25/25Veröffentlicht & auflösbar — 1 Paket(e) auf pypi
35/35Veröffentlichungsaktualität — letzte Veröffentlichung vor 12 Tagen
20/20Versionshistorie — 58 veröffentlichte Versionen
20/20Nicht veraltet — aktiv, nicht veraltet oder zurückgezogen
Verwendete Eingangsdaten
packageslobster-ai
ecosystemspypi
any_deprecatednein
min_days_since_publish12

Engineering-Qualität

Sind grundlegende Engineering- und Dokumentationspraktiken vorhanden?

81Gut · 20 % des Gesamtindex
Wie die Bewertung erfolgt
24/24CI-Workflows — 6 Workflow(s)
24/24Tests vorhanden
0/16Linter-Konfiguration
0/9.6Pre-Commit-Hooks
0/6.4.editorconfig
20/20OpenSSF Scorecard: CI-Tests — 2 out of 2 merged PRs checked by a CI test -- score normalized to 10
Verwendete Eingangsdaten
has_cija
has_testsja
has_editorconfignein
has_linter_confignein
has_precommit_confignein

Dokumentation

100Exzellent
Wie die Bewertung erfolgt
30/30README
25/25Dokumentationsverzeichnis
15/15Dokumentations-/Homepage-Site — https://www.lobsterbio.com/
10/10Repository-Beschreibung
10/10Topics — 7 Topics
10/10Wiki
Verwendete Eingangsdaten
topicsagents, bioinformatics, langgraph, transcriptomics, lobster, omics, proteomics
has_wikija
homepagehttps://www.lobsterbio.com/
has_readmeja
has_docs_dirja
has_descriptionja

Sicherheit

Sind die sichtbaren Sicherheits- und Lieferkettenpraktiken belastbar, ohne ungeklärte Exposition gegenüber Hochrisikojurisdiktionen?

34Gefährdet · 16 % des Gesamtindex

Sicherheitslage

34Gefährdet
Wie die Bewertung erfolgt
7.5/7.5Binary-Artifacts — no binaries found in the repo
0/7.5Branch-Protection — branch protection not enabled on development/release branches
2.5/2.5CI-Tests — 2 out of 2 merged PRs checked by a CI test -- score normalized to 10
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
0/7.5Code-Review — Found 0/30 approved changesets -- score normalized to 0
0.8/2.5Contributors — project has 1 contributing companies or organizations -- score normalized to 3
10/10Dangerous-Workflow — no dangerous workflow patterns detected
0/7.5Dependency-Update-Tool — no update tool detected
0/5Fuzzing — project is not fuzzed
2.2/2.5Lizenz — license file detected
7.5/7.5Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
5/5Packaging — packaging workflow detected
0/5Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
0/5SAST — SAST tool is not run on all commits -- score normalized to 0
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — Project has not signed or included provenance with any releases.
0/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
0/7.5Vulnerabilities — 149 existing vulnerabilities detected
Verwendete Eingangsdaten
sourceopenssf_scorecard
checks_evaluated18
scorecard_versionv5.5.0
checks_inconclusive0
scorecard_aggregate3,4

AI Readiness

Wie gut ist das Repository dafür ausgestattet, mit KI-Coding-Agenten entwickelt und gepflegt zu werden? Ein unabhängiges, experimentelles Badge — Gewicht 0,0, es wird eigenständig ausgewiesen und verändert den Gesamt-Gesundheitswert nicht.

49Gefährdet · 0 % des Gesamtindex
Wie die Bewertung erfolgt
0/45Agentenanweisungen — keine CLAUDE.md / AGENTS.md / Editor-Regeln
0/15Maschinenlesbare Doku (llms.txt)
0/40Lesbare Commit-Historie — keine Daten
Verwendete Eingangsdaten
has_llms_txtnein
legible_history_share
agent_instruction_files
agent_instruction_max_bytes
Von der Bewertung ausgeschlossen (keine Daten oder nicht anwendbar): Lesbare Commit-Historie. Die verbleibenden Gewichte wurden renormalisiert.
Wie die Bewertung erfolgt
18/18Bootstrap mit einem Befehl — Makefile
22/22Automatisierte Tests
0/11Lint-/Format-Konfiguration
11/11Statische Typprüfung — packages/lobster-genomics/lobster/agents/genomics/py.typed, packages/lobster-metabolomics/lobster/agents/metabolomics/py.typed, packages/lobster-metadata/lobster/agents/metadata_assistant/py.typed, packages/lobster-ml/lobster/agents/machine_learning/py.typed, packages/lobster-proteomics/lobster/agents/proteomics/py.typed, packages/lobster-research/lobster/agents/data_expert/py.typed, packages/lobster-research/lobster/agents/research/py.typed, packages/lobster-structural-viz/lobster/agents/py.typed, packages/lobster-transcriptomics/lobster/agents/transcriptomics/py.typed, packages/lobster-visualization/lobster/agents/py.typed
10/10Reproduzierbare Umgebung — lockfile
0/10Belegte Agentenpraxis — keine Daten
0/8Automatisierte Wartung — keine Daten
0/10OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
Verwendete Eingangsdaten
has_nixnein
has_testsja
lockfilesgo.sum, uv.lock
has_dockerfilenein
typed_languagenein
bootstrap_filesMakefile
has_devcontainernein
has_linter_confignein
typecheck_configspackages/lobster-genomics/lobster/agents/genomics/py.typed, packages/lobster-metabolomics/lobster/agents/metabolomics/py.typed, packages/lobster-metadata/lobster/agents/metadata_assistant/py.typed, packages/lobster-ml/lobster/agents/machine_learning/py.typed, packages/lobster-proteomics/lobster/agents/proteomics/py.typed, packages/lobster-research/lobster/agents/data_expert/py.typed, packages/lobster-research/lobster/agents/research/py.typed, packages/lobster-structural-viz/lobster/agents/py.typed, packages/lobster-transcriptomics/lobster/agents/transcriptomics/py.typed, packages/lobster-visualization/lobster/agents/py.typed
agent_commit_share
toolchain_manifests
dependency_bot_commit_share
Von der Bewertung ausgeschlossen (keine Daten oder nicht anwendbar): Belegte Agentenpraxis, Automatisierte Wartung. Die verbleibenden Gewichte wurden renormalisiert.
Wie die Bewertung erfolgt
27/45Typprüfbarer Code — Python mit Typprüfungs-Konfiguration (packages/lobster-genomics/lobster/agents/genomics/py.typed, packages/lobster-metabolomics/lobster/agents/metabolomics/py.typed, packages/lobster-metadata/lobster/agents/metadata_assistant/py.typed, packages/lobster-ml/lobster/agents/machine_learning/py.typed, packages/lobster-proteomics/lobster/agents/proteomics/py.typed, packages/lobster-research/lobster/agents/data_expert/py.typed, packages/lobster-research/lobster/agents/research/py.typed, packages/lobster-structural-viz/lobster/agents/py.typed, packages/lobster-transcriptomics/lobster/agents/transcriptomics/py.typed, packages/lobster-visualization/lobster/agents/py.typed)
52.8/55Handhabbare Dateigrößen — 43/1.061 Quelldateien über 60 KB
Verwendete Eingangsdaten
primary_languagePython
largest_source_bytes171.948
source_files_sampled1.061
oversized_source_files43

Eckdaten

42GitHub-Sterne
2Mitwirkende
814Commits, letzte 12 Monate
5Tage seit letztem Push
56Releases
1Bus-Faktor
1offene Issues
Go, PyPIPaket-Ökosysteme

Warnungen zur Datenerhebung

  • Could not fetch go package 'github.com/the-omics-os/lobster-tui' from its registry

Weitere Details

OpenSSF Scorecard 3.4 / 10
3.4Gesamtwert

Unabhängige, werkzeugneutrale Sicherheitsbewertung durch das quelloffene OpenSSF Scorecard. Jede Prüfung honoriert eine Sicherheits-Praxis, nicht das Werkzeug eines bestimmten Anbieters. Prüfungen, die Scorecard nicht ermitteln konnte, sind mit k. A. markiert und vom Sicherheitswert ausgeschlossen (nie als null gezählt).Scorecard v5.5.0 · 2026-07-15 13:15 UTC

10Binary-Artifactsno binaries found in the repo
0Branch-Protectionbranch protection not enabled on development/release branches
10CI-Tests2 out of 2 merged PRs checked by a CI test -- score normalized to 10
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
0Code-ReviewFound 0/30 approved changesets -- score normalized to 0
3Contributorsproject has 1 contributing companies or organizations -- score normalized to 3
10Dangerous-Workflowno dangerous workflow patterns detected
0Dependency-Update-Toolno update tool detected
0Fuzzingproject is not fuzzed
9Licenselicense file detected
10Maintained30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
10Packagingpackaging workflow detected
0Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 0
0SASTSAST tool is not run on all commits -- score normalized to 0
0Security-Policysecurity policy file not detected
0Signed-ReleasesProject has not signed or included provenance with any releases.
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
0Vulnerabilities149 existing vulnerabilities detected
Direkte Abhängigkeiten 42
RegistryPaketVersionsvorgabeManifest
Gocharm.land/bubbles/v2v2.0.0lobster-tui/go.mod
Gocharm.land/bubbletea/v2v2.0.1lobster-tui/go.mod
Gocharm.land/lipgloss/v2v2.0.0lobster-tui/go.mod
Gogithub.com/alecthomas/chroma/v2v2.14.0lobster-tui/go.mod
Gogithub.com/charmbracelet/glamourv0.10.0lobster-tui/go.mod
Gogolang.org/x/termv0.40.0lobster-tui/go.mod
PyPIpandas>=1.5.0pyproject.toml
PyPInumpy>=2.2,<2.5pyproject.toml
PyPIscipy>=1.10.0pyproject.toml
PyPIscikit-learn>=1.3.0pyproject.toml
PyPIanndata>=0.9.0pyproject.toml
PyPImudata>=0.2.0pyproject.toml
PyPIh5py>=3.9.0pyproject.toml
PyPIlangchain-core>=0.3.79pyproject.toml
PyPIlanggraph>=1.0.5pyproject.toml
PyPIrich>=12.0.0pyproject.toml
PyPItyper>=0.7.0pyproject.toml
PyPIpython-dotenv>=1.0.0pyproject.toml
PyPIprompt-toolkit>=3.0.52pyproject.toml
PyPIplotly>=5.0.0pyproject.toml
PyPImatplotlib>=3.7.0pyproject.toml
PyPIkaleido>=0.2.0pyproject.toml
PyPIbiopython>=1.81pyproject.toml
PyPIstatsmodels>=0.14.0pyproject.toml
PyPIgseapy>=1.1.0pyproject.toml
PyPIGEOparsepyproject.toml
PyPIopenpyxl>=3.1.0pyproject.toml
PyPIpyreadr>=0.4.0pyproject.toml
PyPIxmltodict>=0.13.0pyproject.toml
PyPIlxml>=4.9.0pyproject.toml
PyPIrequests>=2.31.0pyproject.toml
PyPIhttpx>=0.27.0pyproject.toml
PyPIcloudscraper>=1.2.71pyproject.toml
PyPIpysradb>=2.5.1pyproject.toml
PyPInbformat>=5.9.0pyproject.toml
PyPIpapermill>=2.4.0pyproject.toml
PyPIjinja2>=3.1pyproject.toml
PyPIpackaging>=25.0pyproject.toml
PyPItabulate>=0.9.0pyproject.toml
PyPItomli_w>=1.0pyproject.toml
PyPIpsutil>=7.0.0pyproject.toml
PyPIlobster-ai-tui~=1.1.0pyproject.toml
Alle Abhängigkeiten 530

Vollständig aufgelöster Abhängigkeitssatz aus dem GitHub-Abhängigkeitsgraphen: 53 direkte und 477 indirekte (transitive) Pakete. Die transitive Hülle ist vollständig, wenn das Repository eine Lockfile eincheckt.

RegistryPaketVersionBeziehung
Gocharm.land/bubbles/v2v2.0.0direkt
Gocharm.land/bubbletea/v2v2.0.1direkt
Gocharm.land/lipgloss/v2v2.0.0direkt
Gogithub.com/alecthomas/chroma/v2v2.14.0direkt
Gogithub.com/charmbracelet/glamourv0.10.0direkt
Gogolang.org/x/termv0.40.0direkt
PyPIanndatadirekt
PyPIanndata0.12.6direkt
PyPIbiopythondirekt
PyPIbiopython1.86direkt
PyPIcloudscraper1.2.71direkt
PyPIgeoparse2.0.4direkt
PyPIgseapy1.1.11direkt
PyPIh5pydirekt
PyPIh5py3.15.1direkt
PyPIhttpxdirekt
PyPIhttpx0.28.1direkt
PyPIjinja23.1.6direkt
PyPIkaleido1.2.0direkt
PyPIlangchain-core1.2.13direkt
PyPIlanggraph1.0.8direkt
PyPIlobster-ai-tui1.1.420direkt
PyPIlxml6.0.2direkt
PyPImatplotlib3.10.7direkt
PyPImudata0.3.2direkt
PyPInbformat5.10.4direkt
PyPInumpydirekt
PyPInumpy2.2.6direkt
PyPIopenpyxl3.1.5direkt
PyPIpackaging25.0direkt
PyPIpandasdirekt
PyPIpandas2.3.3direkt
PyPIpapermill2.6.0direkt
PyPIplotlydirekt
PyPIplotly6.5.0direkt
PyPIprompt-toolkit3.0.52direkt
PyPIpsutil7.1.3direkt
PyPIpyreadr0.5.3direkt
PyPIpysradb2.5.1direkt
PyPIpython-dotenv1.2.1direkt
PyPIrequestsdirekt
PyPIrequests2.32.5direkt
PyPIrich14.2.0direkt
PyPIscikit-learndirekt
PyPIscikit-learn1.7.2direkt
PyPIscipydirekt
PyPIscipy1.16.3direkt
PyPIstatsmodelsdirekt
PyPIstatsmodels0.14.5direkt
PyPItabulate0.9.0direkt
PyPItomli-w1.2.0direkt
PyPItyper0.19.2direkt
PyPIxmltodict1.0.2direkt
Gogithub.com/atotto/clipboardv0.1.4indirekt
Gogithub.com/aymanbagabas/go-osc52/v2v2.0.1indirekt
Gogithub.com/aymerick/douceurv0.2.0indirekt
Gogithub.com/charmbracelet/colorprofilev0.4.2indirekt
Gogithub.com/charmbracelet/lipglossv1.1.1-0.20250404203927-76690c660834indirekt
Gogithub.com/charmbracelet/ultravioletv0.0.0-20260205113103-524a6607adb8indirekt
Gogithub.com/charmbracelet/x/ansiv0.11.6indirekt
Gogithub.com/charmbracelet/x/cellbufv0.0.15indirekt
Gogithub.com/charmbracelet/x/exp/slicev0.0.0-20250327172914-2fdc97757edfindirekt
Gogithub.com/charmbracelet/x/termv0.2.2indirekt
Gogithub.com/charmbracelet/x/termiosv0.1.1indirekt
Gogithub.com/charmbracelet/x/windowsv0.2.2indirekt
Gogithub.com/clipperhouse/displaywidthv0.11.0indirekt
Gogithub.com/clipperhouse/uax29/v2v2.7.0indirekt
Gogithub.com/dlclark/regexp2v1.11.0indirekt
Gogithub.com/gorilla/cssv1.0.1indirekt
Gogithub.com/lucasb-eyer/go-colorfulv1.3.0indirekt
Gogithub.com/mattn/go-isattyv0.0.20indirekt
Gogithub.com/mattn/go-runewidthv0.0.20indirekt
Gogithub.com/microcosm-cc/bluemondayv1.0.27indirekt
Gogithub.com/muesli/cancelreaderv0.2.2indirekt
Gogithub.com/muesli/reflowv0.3.0indirekt
Gogithub.com/muesli/termenvv0.16.0indirekt
Gogithub.com/rivo/unisegv0.4.7indirekt
Gogithub.com/xo/terminfov0.0.0-20220910002029-abceb7e1c41eindirekt
Gogithub.com/yuin/goldmarkv1.7.8indirekt
Gogithub.com/yuin/goldmark-emojiv1.0.5indirekt
Gogolang.org/x/netv0.33.0indirekt
Gogolang.org/x/syncv0.19.0indirekt
Gogolang.org/x/sysv0.41.0indirekt
Gogolang.org/x/textv0.24.0indirekt
PyPIaccelerate1.11.0indirekt
PyPIaiohappyeyeballs2.6.1indirekt
PyPIaiohttp3.13.2indirekt
PyPIaiosignal1.4.0indirekt
PyPIannotated-doc0.0.4indirekt
PyPIannotated-types0.7.0indirekt
PyPIannoy1.17.3indirekt
PyPIansicolors1.1.8indirekt
PyPIanthropic0.79.0indirekt
PyPIantlr4-python3-runtime4.9.3indirekt
PyPIanyio4.11.0indirekt
PyPIarray-api-compat1.12.0indirekt
PyPIastroid4.0.2indirekt
PyPIattrs25.4.0indirekt
PyPIautograd1.8.0indirekt
PyPIautograd-gamma0.5.0indirekt
PyPIazure-ai-agents1.2.0b6indirekt
PyPIazure-ai-inference1.0.0b9indirekt
PyPIazure-ai-projects1.1.0b4indirekt
PyPIazure-common1.1.28indirekt
PyPIazure-core1.38.1indirekt
PyPIazure-core-tracing-opentelemetry1.0.0b12indirekt
PyPIazure-cosmos4.14.6indirekt
PyPIazure-identity1.25.2indirekt
PyPIazure-search-documents11.6.0indirekt
PyPIazure-storage-blob12.28.0indirekt
PyPIbabel2.17.0indirekt
PyPIbackoff2.2.1indirekt
PyPIbackrefs6.1indirekt
PyPIbandit1.9.1indirekt
PyPIbcrypt5.0.0indirekt
PyPIbeautifulsoup44.14.2indirekt
PyPIbed-reader1.0.6indirekt
PyPIblack25.11.0indirekt
PyPIblosc23.11.1indirekt
PyPIboto31.42.49indirekt
PyPIbotocore1.42.49indirekt
PyPIbuild1.3.0indirekt
PyPIbump2version1.0.1indirekt
PyPIbumpversion0.6.0indirekt
PyPIcertifi2025.11.12indirekt
PyPIcffi2.0.0indirekt
PyPIcfgv3.4.0indirekt
PyPIcharset-normalizer3.4.4indirekt
PyPIchoreographer1.2.1indirekt
PyPIchromadbindirekt
PyPIchromadb1.5.2indirekt
PyPIclick8.3.1indirekt
PyPIcloudpickle3.1.2indirekt
PyPIcohereindirekt
PyPIcohere6.1.0indirekt
PyPIcolorama0.4.6indirekt
PyPIcoloredlogs15.0.1indirekt
PyPIcolorlog6.10.1indirekt
PyPIcontourpy1.3.3indirekt
PyPIcoverage7.12.0indirekt
PyPIcrc32c2.8indirekt
PyPIcryptography46.0.3indirekt
PyPIcycler0.12.1indirekt
PyPIcython3.2.1indirekt
PyPIcyvcf2indirekt
PyPIcyvcf20.31.4indirekt
PyPIdask2026.1.2indirekt
PyPIdask-glm0.4.0indirekt
PyPIdask-ml2025.1.0indirekt
PyPIdill0.4.0indirekt
PyPIdistlib0.4.0indirekt
PyPIdistributed2026.1.2indirekt
PyPIdistro1.9.0indirekt
PyPIdocling2.62.0indirekt
PyPIdocling-core2.51.1indirekt
PyPIdocling-ibm-models3.10.2indirekt
PyPIdocling-parse4.7.1indirekt
PyPIdocstring-parser0.17.0indirekt
PyPIdocutils0.22.3indirekt
PyPIdonfig0.8.1.post1indirekt
PyPIdurationpy0.10indirekt
PyPIentrypoints0.4indirekt
PyPIet-xmlfile2.0.0indirekt
PyPIexecnet2.1.2indirekt
PyPIfactory-boy3.3.3indirekt
PyPIfaker38.0.0indirekt
PyPIfakeredis2.32.1indirekt
PyPIfastapi0.121.2indirekt
PyPIfastavro1.12.2indirekt
PyPIfastjsonschema2.21.2indirekt
PyPIfilelock3.20.0indirekt
PyPIfiletype1.2.0indirekt
PyPIflake87.3.0indirekt
PyPIflatbuffers25.12.19indirekt
PyPIfonttools4.60.1indirekt
PyPIformulaic1.2.1indirekt
PyPIformulaic-contrasts1.0.0indirekt
PyPIfreezegun1.5.5indirekt
PyPIfrozenlist1.8.0indirekt
PyPIfsspec2025.10.0indirekt
PyPIftputil5.1.0indirekt
PyPIgenebeindirekt
PyPIgenebe0.2.1indirekt
PyPIghp-import2.1.0indirekt
PyPIgoogle-auth2.48.0indirekt
PyPIgoogle-genai1.63.0indirekt
PyPIgoogleapis-common-protos1.72.0indirekt
PyPIgrimp3.14indirekt
PyPIgrpcio1.76.0indirekt
PyPIh110.16.0indirekt
PyPIharmonypyindirekt
PyPIharmonypy0.2.0indirekt
PyPIhf-xet1.2.0indirekt
PyPIhttpcore1.0.9indirekt
PyPIhttpretty1.1.4indirekt
PyPIhttptools0.7.1indirekt
PyPIhuggingface-hub0.36.0indirekt
PyPIhumanfriendly10.0indirekt
PyPIhyperoptindirekt
PyPIid1.5.0indirekt
PyPIidentify2.6.15indirekt
PyPIidna3.11indirekt
PyPIigraphindirekt
PyPIigraph1.0.0indirekt
PyPIimageio2.37.2indirekt
PyPIimbalanced-learnindirekt
PyPIimport-linter2.10indirekt
PyPIimportlib-metadata8.7.0indirekt
PyPIimportlib-resources6.5.2indirekt
PyPIiniconfig2.3.0indirekt
PyPIinterface-meta1.3.0indirekt
PyPIinterpretindirekt
PyPIisodate0.7.2indirekt
PyPIisort7.0.0indirekt
PyPIjaraco-classes3.4.0indirekt
PyPIjaraco-context6.0.1indirekt
PyPIjaraco-functools4.3.0indirekt
PyPIjeepney0.9.0indirekt
PyPIjiter0.12.0indirekt
PyPIjmespath1.0.1indirekt
PyPIjoblib1.5.2indirekt
PyPIjsonlines4.0.0indirekt
PyPIjsonpatch1.33indirekt
PyPIjsonpointer3.0.0indirekt
PyPIjsonref1.1.0indirekt
PyPIjsonschema4.25.1indirekt
PyPIjsonschema-specifications2025.9.1indirekt
PyPIjupyter-client8.8.0indirekt
PyPIjupyter-core5.9.1indirekt
PyPIkeyring25.7.0indirekt
PyPIkiwisolver1.4.9indirekt
PyPIkubernetes35.0.0indirekt
PyPIlangchain1.2.10indirekt
PyPIlangchain-anthropic1.3.3indirekt
PyPIlangchain-aws1.2.5indirekt
PyPIlangchain-azure-ai1.0.3indirekt
PyPIlangchain-google-genai4.2.0indirekt
PyPIlangchain-ollama0.3.10indirekt
PyPIlangchain-openai1.1.9indirekt
PyPIlangfuse3.10.0indirekt
PyPIlanggraph-checkpoint2.1.2indirekt
PyPIlanggraph-prebuilt1.0.7indirekt
PyPIlanggraph-sdk0.3.6indirekt
PyPIlangsmith0.3.45indirekt
PyPIlangsmith0.4.43indirekt
PyPIlatex2mathml3.78.1indirekt
PyPIlazy-loader0.4indirekt
PyPIlegacy-api-wrap1.5indirekt
PyPIleidenalgindirekt
PyPIleidenalg0.11.0indirekt
PyPIlifelinesindirekt
PyPIlifelines0.30.1indirekt
PyPIlinkify-it-py2.0.3indirekt
PyPIllvmlite0.44.0indirekt
PyPIlobster-aiindirekt
PyPIlobster-drug-discoveryindirekt
PyPIlobster-drug-discovery1.1.420indirekt
PyPIlobster-genomics1.1.420indirekt
PyPIlobster-metabolomics1.1.420indirekt
PyPIlobster-mlindirekt
PyPIlobster-proteomics1.1.420indirekt
PyPIlobster-research1.1.420indirekt
PyPIlobster-transcriptomics1.1.420indirekt
PyPIlobster-vectorindirekt
PyPIlobster-vector1.1.420indirekt
PyPIlobster-visualization1.1.420indirekt
PyPIlocket1.0.0indirekt
PyPIlogistro2.0.1indirekt
PyPImarkdown3.10indirekt
PyPImarkdown-it-py4.0.0indirekt
PyPImarko2.2.1indirekt
PyPImarkupsafe3.0.3indirekt
PyPImccabe0.7.0indirekt
PyPImdit-py-plugins0.5.0indirekt
PyPImdurl0.1.2indirekt
PyPImeekoindirekt
PyPImeeko0.7.1indirekt
PyPImemory-profiler0.61.0indirekt
PyPImergedeep1.3.4indirekt
PyPImkdocs1.6.1indirekt
PyPImkdocs-get-deps0.2.0indirekt
PyPImkdocs-material9.7.0indirekt
PyPImkdocs-material-extensions1.3.1indirekt
PyPImmh35.2.0indirekt
PyPImofapy2indirekt
PyPImore-itertools10.8.0indirekt
PyPImoto5.1.17indirekt
PyPImpire2.10.2indirekt
PyPImpmath1.3.0indirekt
PyPImsal1.34.0indirekt
PyPImsal-extensions1.3.1indirekt
PyPImsgpack1.1.2indirekt
PyPImultidict6.7.0indirekt
PyPImultipledispatch1.0.0indirekt
PyPImultiprocess0.70.18indirekt
PyPImypy1.18.2indirekt
PyPImypy-extensions1.1.0indirekt
PyPInarwhals2.12.0indirekt
PyPInatsort8.4.0indirekt
PyPInbclient0.10.2indirekt
PyPIndindex1.10.0indirekt
PyPInetworkxindirekt
PyPInetworkx3.5indirekt
PyPInh30.3.2indirekt
PyPInodeenv1.9.1indirekt
PyPInumba0.61.2indirekt
PyPInumcodecs0.16.3indirekt
PyPInumexpr2.14.1indirekt
PyPInvidia-cublas-cu1212.8.4.1indirekt
PyPInvidia-cuda-cupti-cu1212.8.90indirekt
PyPInvidia-cuda-nvrtc-cu1212.8.93indirekt
PyPInvidia-cuda-runtime-cu1212.8.90indirekt
PyPInvidia-cudnn-cu129.10.2.21indirekt
PyPInvidia-cufft-cu1211.3.3.83indirekt
PyPInvidia-cufile-cu121.13.1.3indirekt
PyPInvidia-curand-cu1210.3.9.90indirekt
PyPInvidia-cusolver-cu1211.7.3.90indirekt
PyPInvidia-cusparse-cu1212.5.8.93indirekt
PyPInvidia-cusparselt-cu120.7.1indirekt
PyPInvidia-nccl-cu122.27.5indirekt
PyPInvidia-nvjitlink-cu1212.8.93indirekt
PyPInvidia-nvshmem-cu123.3.20indirekt
PyPInvidia-nvtx-cu1212.8.90indirekt
PyPIoauthlib3.3.1indirekt
PyPIobonetindirekt
PyPIobonet1.1.1indirekt
PyPIocrmac1.0.0indirekt
PyPIollama0.6.1indirekt
PyPIomegaconf2.3.0indirekt
PyPIonnxruntime1.24.2indirekt
PyPIopenaiindirekt
PyPIopenai2.8.1indirekt
PyPIopencv-python4.11.0.86indirekt
PyPIopentelemetry-api1.38.0indirekt
PyPIopentelemetry-exporter-otlp-proto-common1.38.0indirekt
PyPIopentelemetry-exporter-otlp-proto-grpc1.38.0indirekt
PyPIopentelemetry-exporter-otlp-proto-http1.38.0indirekt
PyPIopentelemetry-proto1.38.0indirekt
PyPIopentelemetry-sdk1.38.0indirekt
PyPIopentelemetry-semantic-conventions0.59b0indirekt
PyPIorjson3.11.4indirekt
PyPIormsgpack1.12.0indirekt
PyPIoverrides7.7.0indirekt
PyPIpaginate0.5.7indirekt
PyPIpartd1.4.2indirekt
PyPIpathspec0.12.1indirekt
PyPIpatsy1.0.2indirekt
PyPIpeptidesindirekt
PyPIpeptides0.5.0indirekt
PyPIpillow11.3.0indirekt
PyPIpip26.0.1indirekt
PyPIpipdeptree2.30.0indirekt
PyPIplatformdirs4.5.0indirekt
PyPIpluggy1.6.0indirekt
PyPIpolars1.35.2indirekt
PyPIpolars-runtime-321.35.2indirekt
PyPIpolyfactory3.0.0indirekt
PyPIposthog5.4.0indirekt
PyPIpre-commit4.4.0indirekt
PyPIpropcache0.4.1indirekt
PyPIprotobuf6.33.1indirekt
PyPIpy-cpuinfo9.0.0indirekt
PyPIpyarrow22.0.0indirekt
PyPIpyasn10.6.2indirekt
PyPIpyasn1-modules0.4.2indirekt
PyPIpybase641.4.3indirekt
PyPIpyclipper1.3.0.post6indirekt
PyPIpycodestyle2.14.0indirekt
PyPIpycparser2.23indirekt
PyPIpydanticindirekt
PyPIpydantic2.12.4indirekt
PyPIpydantic-core2.41.5indirekt
PyPIpydantic-settings2.12.0indirekt
PyPIpydeseq2indirekt
PyPIpydeseq20.5.2indirekt
PyPIpyflakes3.4.0indirekt
PyPIpygments2.19.2indirekt
PyPIpyjwt2.11.0indirekt
PyPIpylatexenc2.10indirekt
PyPIpylint4.0.3indirekt
PyPIpymdown-extensions10.17.1indirekt
PyPIpymmh30.0.5indirekt
PyPIpynndescent0.5.13indirekt
PyPIpyobjc-core12.1indirekt
PyPIpyobjc-framework-cocoa12.1indirekt
PyPIpyobjc-framework-coreml12.1indirekt
PyPIpyobjc-framework-quartz12.1indirekt
PyPIpyobjc-framework-vision12.1indirekt
PyPIpyparsing3.2.5indirekt
PyPIpypdfium24.30.0indirekt
PyPIpypika0.51.1indirekt
PyPIpyproject-hooks1.2.0indirekt
PyPIpyreadline33.5.4indirekt
PyPIpytestindirekt
PyPIpytest9.0.1indirekt
PyPIpytest-asyncio1.3.0indirekt
PyPIpytest-benchmark5.2.3indirekt
PyPIpytest-covindirekt
PyPIpytest-cov7.0.0indirekt
PyPIpytest-html4.1.1indirekt
PyPIpytest-json-report1.5.0indirekt
PyPIpytest-metadata3.1.1indirekt
PyPIpytest-mockindirekt
PyPIpytest-mock3.15.1indirekt
PyPIpytest-timeout2.4.0indirekt
PyPIpytest-xdist3.8.0indirekt
PyPIpython-dateutil2.9.0.post0indirekt
PyPIpython-docx1.2.0indirekt
PyPIpython-multipart0.0.20indirekt
PyPIpython-pptx1.0.2indirekt
PyPIpytokens0.3.0indirekt
PyPIpytz2025.2indirekt
PyPIpywin32311indirekt
PyPIpywin32-ctypes0.2.3indirekt
PyPIpyyaml6.0.3indirekt
PyPIpyyaml-env-tag1.1indirekt
PyPIpyzmq27.1.0indirekt
PyPIrapidfuzzindirekt
PyPIrapidocr3.4.2indirekt
PyPIrdkitindirekt
PyPIrdkit2025.9.6indirekt
PyPIreadme-renderer44.0indirekt
PyPIredis7.0.1indirekt
PyPIreferencing0.37.0indirekt
PyPIregex2025.11.3indirekt
PyPIrequests-oauthlib2.0.0indirekt
PyPIrequests-toolbelt1.0.0indirekt
PyPIresponses0.25.8indirekt
PyPIrfc39862.0.0indirekt
PyPIrispy0.10.0indirekt
PyPIrpds-py0.29.0indirekt
PyPIrsa4.9.1indirekt
PyPIrtree1.4.1indirekt
PyPIruff0.14.5indirekt
PyPIs3transfer0.16.0indirekt
PyPIsafetensors0.6.2indirekt
PyPIscanpyindirekt
PyPIscanpy1.11.5indirekt
PyPIscikit-image0.25.2indirekt
PyPIscikit-miscindirekt
PyPIscikit-misc0.5.2indirekt
PyPIscikit-survivalindirekt
PyPIscrubletindirekt
PyPIscrublet0.2.3indirekt
PyPIscvi-toolsindirekt
PyPIseaborn0.13.2indirekt
PyPIsecretstorage3.4.1indirekt
PyPIsemchunk2.2.2indirekt
PyPIsentence-transformersindirekt
PyPIsentence-transformers5.4.1indirekt
PyPIsession-info1.0.1indirekt
PyPIsession-info20.2.3indirekt
PyPIsetuptoolsindirekt
PyPIsetuptools80.9.0indirekt
PyPIsgkitindirekt
PyPIsgkit0.8.0indirekt
PyPIshapindirekt
PyPIshapely2.1.2indirekt
PyPIshellingham1.5.4indirekt
PyPIsimplejson3.20.2indirekt
PyPIsix1.17.0indirekt
PyPIsniffio1.3.1indirekt
PyPIsortedcontainers2.4.0indirekt
PyPIsoupsieve2.8indirekt
PyPIsparse0.17.0indirekt
PyPIstarlette0.49.3indirekt
PyPIstdlib-list0.12.0indirekt
PyPIstevedore5.5.0indirekt
PyPIsympy1.14.0indirekt
PyPItables3.10.2indirekt
PyPItblib3.2.2indirekt
PyPItenacity9.1.2indirekt
PyPItexttable1.7.0indirekt
PyPItextual6.7.1indirekt
PyPIthreadpoolctl3.6.0indirekt
PyPItifffile2025.10.16indirekt
PyPItiktoken0.12.0indirekt
PyPItinynetrc1.3.1indirekt
PyPItokenizers0.22.1indirekt
PyPItomlkit0.13.3indirekt
PyPItoolz1.1.0indirekt
PyPItorchindirekt
PyPItorch2.9.1indirekt
PyPItorchvision0.24.1indirekt
PyPItornado6.5.2indirekt
PyPItqdm4.67.1indirekt
PyPItraitlets5.14.3indirekt
PyPItransformersindirekt
PyPItransformers4.57.1indirekt
PyPItree-sitter0.25.2indirekt
PyPItree-sitter-c0.24.1indirekt
PyPItree-sitter-java0.23.5indirekt
PyPItree-sitter-javascript0.25.0indirekt
PyPItree-sitter-python0.25.0indirekt
PyPItree-sitter-typescript0.23.2indirekt
PyPItriton3.5.1indirekt
PyPItwine6.2.0indirekt
PyPItypes-requests2.33.0.20260408indirekt
PyPItyping-extensions4.15.0indirekt
PyPItyping-inspection0.4.2indirekt
PyPItzdata2025.2indirekt
PyPIuc-micro-py1.0.3indirekt
PyPIumap-learn0.5.9.post2indirekt
PyPIurllib32.5.0indirekt
PyPIuuid-utils0.14.0indirekt
PyPIuvicorn0.38.0indirekt
PyPIuvloop0.22.1indirekt
PyPIvinaindirekt
PyPIvina1.2.7indirekt
PyPIvirtualenv20.35.4indirekt
PyPIwatchdog6.0.0indirekt
PyPIwatchfiles1.1.1indirekt
PyPIwcwidth0.2.14indirekt
PyPIwebsocket-client1.9.0indirekt
PyPIwebsockets15.0.1indirekt
PyPIwerkzeug3.1.3indirekt
PyPIwheelindirekt
PyPIwheel0.46.3indirekt
PyPIwrapt1.17.3indirekt
PyPIxarrayindirekt
PyPIxarray2025.11.0indirekt
PyPIxgboostindirekt
PyPIxlsxwriter3.2.9indirekt
PyPIxxhash3.6.0indirekt
PyPIyarl1.22.0indirekt
PyPIzarr3.1.3indirekt
PyPIzict3.0.0indirekt
PyPIzipp3.23.0indirekt
PyPIzstandard0.23.0indirekt
PyPIzstandard0.25.0indirekt
JSON-Rohbericht maschinenlesbar
{
  "data": {
    "repo": {
      "topics": [
        "agents",
        "bioinformatics",
        "langgraph",
        "transcriptomics",
        "lobster",
        "omics",
        "proteomics"
      ],
      "is_fork": false,
      "size_kb": 25200,
      "has_wiki": true,
      "homepage": "https://www.lobsterbio.com/",
      "languages": {
        "Go": 485100,
        "Jinja": 19657,
        "Shell": 6394,
        "Python": 17924569,
        "Makefile": 34579
      },
      "pushed_at": "2026-07-09T20:34:40Z",
      "created_at": "2025-08-13T03:19:01Z",
      "owner_type": "Organization",
      "updated_at": "2026-07-09T16:55:41Z",
      "description": "The self-evolving agentic framework for bioinformatics",
      "is_archived": false,
      "is_disabled": false,
      "license_spdx": null,
      "default_branch": "main",
      "primary_language": "Python",
      "significant_languages": [
        "Python"
      ]
    },
    "owner": {
      "blog": "https://www.omics-os.com/",
      "name": "omics-os",
      "type": "Organization",
      "login": "the-omics-os",
      "company": null,
      "location": "United States of America",
      "followers": 14,
      "avatar_url": "https://avatars.githubusercontent.com/u/226220958?v=4",
      "created_at": "2025-08-13T03:07:11Z",
      "is_verified": null,
      "public_repos": 9,
      "account_age_days": 336
    },
    "activity": {
      "releases_count": 56,
      "commits_last_year": 814,
      "latest_release_at": "2026-07-02T20:16:04Z",
      "latest_release_tag": "v1.1.419",
      "releases_from_tags": false,
      "days_since_last_push": 5,
      "active_weeks_last_year": 13,
      "days_since_latest_release": 12,
      "mean_days_between_releases": 7.6
    },
    "community": {
      "has_readme": true,
      "has_license": true,
      "has_description": true,
      "has_contributing": true,
      "health_percentage": 62,
      "has_issue_template": false,
      "has_code_of_conduct": false,
      "has_pull_request_template": false
    },
    "ecosystem": {
      "packages": [
        {
          "name": "lobster-ai",
          "exists": true,
          "license": "AGPL-3.0-or-later",
          "keywords": [
            "bioinformatics",
            "RNA-seq",
            "single-cell",
            "AI",
            "machine-learning",
            "data-analysis",
            "genomics",
            "Development Status :: 5 - Production/Stable",
            "Environment :: Console",
            "Framework :: FastAPI",
            "Intended Audience :: Healthcare Industry",
            "Intended Audience :: Science/Research",
            "Operating System :: OS Independent",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3.12",
            "Programming Language :: Python :: 3.13",
            "Topic :: Scientific/Engineering :: Artificial Intelligence",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
          ],
          "ecosystem": "pypi",
          "matches_repo": true,
          "registry_url": "https://pypi.org/project/lobster-ai/",
          "is_deprecated": false,
          "latest_version": "1.1.419",
          "repository_url": "https://github.com/the-omics-os/lobster",
          "versions_count": 58,
          "total_downloads": null,
          "dependents_count": null,
          "deprecation_note": null,
          "maintainers_count": null,
          "monthly_downloads": null,
          "first_published_at": "2026-01-06T10:37:54.576282Z",
          "latest_published_at": "2026-07-02T20:18:20.563280Z",
          "latest_version_yanked": null,
          "days_since_latest_publish": 12
        }
      ]
    },
    "popularity": {
      "forks": 9,
      "stars": 42,
      "watchers": 0,
      "open_issues_and_prs": 5
    },
    "ai_readiness": {
      "has_nix": false,
      "example_dirs": [],
      "has_llms_txt": false,
      "has_dockerfile": false,
      "has_mcp_signal": false,
      "bootstrap_files": [
        "Makefile"
      ],
      "api_schema_files": [],
      "has_devcontainer": false,
      "typecheck_configs": [
        "packages/lobster-genomics/lobster/agents/genomics/py.typed",
        "packages/lobster-metabolomics/lobster/agents/metabolomics/py.typed",
        "packages/lobster-metadata/lobster/agents/metadata_assistant/py.typed",
        "packages/lobster-ml/lobster/agents/machine_learning/py.typed",
        "packages/lobster-proteomics/lobster/agents/proteomics/py.typed",
        "packages/lobster-research/lobster/agents/data_expert/py.typed",
        "packages/lobster-research/lobster/agents/research/py.typed",
        "packages/lobster-structural-viz/lobster/agents/py.typed",
        "packages/lobster-transcriptomics/lobster/agents/transcriptomics/py.typed",
        "packages/lobster-visualization/lobster/agents/py.typed"
      ],
      "largest_source_bytes": 171948,
      "source_files_sampled": 1061,
      "oversized_source_files": 43,
      "agent_instruction_files": [],
      "agent_instruction_max_bytes": null
    },
    "dependencies": {
      "manifests": [
        "lobster-tui/go.mod",
        "pyproject.toml"
      ],
      "ecosystems": [
        "go",
        "pypi"
      ],
      "dependencies": [
        {
          "name": "charm.land/bubbles/v2",
          "manifest": "lobster-tui/go.mod",
          "ecosystem": "go",
          "version_constraint": "v2.0.0"
        },
        {
          "name": "charm.land/bubbletea/v2",
          "manifest": "lobster-tui/go.mod",
          "ecosystem": "go",
          "version_constraint": "v2.0.1"
        },
        {
          "name": "charm.land/lipgloss/v2",
          "manifest": "lobster-tui/go.mod",
          "ecosystem": "go",
          "version_constraint": "v2.0.0"
        },
        {
          "name": "github.com/alecthomas/chroma/v2",
          "manifest": "lobster-tui/go.mod",
          "ecosystem": "go",
          "version_constraint": "v2.14.0"
        },
        {
          "name": "github.com/charmbracelet/glamour",
          "manifest": "lobster-tui/go.mod",
          "ecosystem": "go",
          "version_constraint": "v0.10.0"
        },
        {
          "name": "golang.org/x/term",
          "manifest": "lobster-tui/go.mod",
          "ecosystem": "go",
          "version_constraint": "v0.40.0"
        },
        {
          "name": "pandas",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=1.5.0"
        },
        {
          "name": "numpy",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=2.2,<2.5"
        },
        {
          "name": "scipy",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=1.10.0"
        },
        {
          "name": "scikit-learn",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=1.3.0"
        },
        {
          "name": "anndata",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=0.9.0"
        },
        {
          "name": "mudata",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=0.2.0"
        },
        {
          "name": "h5py",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=3.9.0"
        },
        {
          "name": "langchain-core",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=0.3.79"
        },
        {
          "name": "langgraph",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=1.0.5"
        },
        {
          "name": "rich",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=12.0.0"
        },
        {
          "name": "typer",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=0.7.0"
        },
        {
          "name": "python-dotenv",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=1.0.0"
        },
        {
          "name": "prompt-toolkit",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=3.0.52"
        },
        {
          "name": "plotly",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=5.0.0"
        },
        {
          "name": "matplotlib",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=3.7.0"
        },
        {
          "name": "kaleido",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=0.2.0"
        },
        {
          "name": "biopython",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=1.81"
        },
        {
          "name": "statsmodels",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=0.14.0"
        },
        {
          "name": "gseapy",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=1.1.0"
        },
        {
          "name": "GEOparse",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": null
        },
        {
          "name": "openpyxl",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=3.1.0"
        },
        {
          "name": "pyreadr",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=0.4.0"
        },
        {
          "name": "xmltodict",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=0.13.0"
        },
        {
          "name": "lxml",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=4.9.0"
        },
        {
          "name": "requests",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=2.31.0"
        },
        {
          "name": "httpx",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=0.27.0"
        },
        {
          "name": "cloudscraper",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=1.2.71"
        },
        {
          "name": "pysradb",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=2.5.1"
        },
        {
          "name": "nbformat",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=5.9.0"
        },
        {
          "name": "papermill",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=2.4.0"
        },
        {
          "name": "jinja2",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=3.1"
        },
        {
          "name": "packaging",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=25.0"
        },
        {
          "name": "tabulate",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=0.9.0"
        },
        {
          "name": "tomli_w",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=1.0"
        },
        {
          "name": "psutil",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": ">=7.0.0"
        },
        {
          "name": "lobster-ai-tui",
          "manifest": "pyproject.toml",
          "ecosystem": "pypi",
          "version_constraint": "~=1.1.0"
        }
      ],
      "all_dependencies": {
        "error": null,
        "source": "github-sbom",
        "packages": [
          {
            "name": "charm.land/bubbles/v2",
            "direct": true,
            "version": "v2.0.0",
            "ecosystem": "go"
          },
          {
            "name": "charm.land/bubbletea/v2",
            "direct": true,
            "version": "v2.0.1",
            "ecosystem": "go"
          },
          {
            "name": "charm.land/lipgloss/v2",
            "direct": true,
            "version": "v2.0.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/alecthomas/chroma/v2",
            "direct": true,
            "version": "v2.14.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/charmbracelet/glamour",
            "direct": true,
            "version": "v0.10.0",
            "ecosystem": "go"
          },
          {
            "name": "golang.org/x/term",
            "direct": true,
            "version": "v0.40.0",
            "ecosystem": "go"
          },
          {
            "name": "anndata",
            "direct": true,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "anndata",
            "direct": true,
            "version": "0.12.6",
            "ecosystem": "pypi"
          },
          {
            "name": "biopython",
            "direct": true,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "biopython",
            "direct": true,
            "version": "1.86",
            "ecosystem": "pypi"
          },
          {
            "name": "cloudscraper",
            "direct": true,
            "version": "1.2.71",
            "ecosystem": "pypi"
          },
          {
            "name": "geoparse",
            "direct": true,
            "version": "2.0.4",
            "ecosystem": "pypi"
          },
          {
            "name": "gseapy",
            "direct": true,
            "version": "1.1.11",
            "ecosystem": "pypi"
          },
          {
            "name": "h5py",
            "direct": true,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "h5py",
            "direct": true,
            "version": "3.15.1",
            "ecosystem": "pypi"
          },
          {
            "name": "httpx",
            "direct": true,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "httpx",
            "direct": true,
            "version": "0.28.1",
            "ecosystem": "pypi"
          },
          {
            "name": "jinja2",
            "direct": true,
            "version": "3.1.6",
            "ecosystem": "pypi"
          },
          {
            "name": "kaleido",
            "direct": true,
            "version": "1.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-core",
            "direct": true,
            "version": "1.2.13",
            "ecosystem": "pypi"
          },
          {
            "name": "langgraph",
            "direct": true,
            "version": "1.0.8",
            "ecosystem": "pypi"
          },
          {
            "name": "lobster-ai-tui",
            "direct": true,
            "version": "1.1.420",
            "ecosystem": "pypi"
          },
          {
            "name": "lxml",
            "direct": true,
            "version": "6.0.2",
            "ecosystem": "pypi"
          },
          {
            "name": "matplotlib",
            "direct": true,
            "version": "3.10.7",
            "ecosystem": "pypi"
          },
          {
            "name": "mudata",
            "direct": true,
            "version": "0.3.2",
            "ecosystem": "pypi"
          },
          {
            "name": "nbformat",
            "direct": true,
            "version": "5.10.4",
            "ecosystem": "pypi"
          },
          {
            "name": "numpy",
            "direct": true,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "numpy",
            "direct": true,
            "version": "2.2.6",
            "ecosystem": "pypi"
          },
          {
            "name": "openpyxl",
            "direct": true,
            "version": "3.1.5",
            "ecosystem": "pypi"
          },
          {
            "name": "packaging",
            "direct": true,
            "version": "25.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pandas",
            "direct": true,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pandas",
            "direct": true,
            "version": "2.3.3",
            "ecosystem": "pypi"
          },
          {
            "name": "papermill",
            "direct": true,
            "version": "2.6.0",
            "ecosystem": "pypi"
          },
          {
            "name": "plotly",
            "direct": true,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "plotly",
            "direct": true,
            "version": "6.5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "prompt-toolkit",
            "direct": true,
            "version": "3.0.52",
            "ecosystem": "pypi"
          },
          {
            "name": "psutil",
            "direct": true,
            "version": "7.1.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pyreadr",
            "direct": true,
            "version": "0.5.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pysradb",
            "direct": true,
            "version": "2.5.1",
            "ecosystem": "pypi"
          },
          {
            "name": "python-dotenv",
            "direct": true,
            "version": "1.2.1",
            "ecosystem": "pypi"
          },
          {
            "name": "requests",
            "direct": true,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "requests",
            "direct": true,
            "version": "2.32.5",
            "ecosystem": "pypi"
          },
          {
            "name": "rich",
            "direct": true,
            "version": "14.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "scikit-learn",
            "direct": true,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "scikit-learn",
            "direct": true,
            "version": "1.7.2",
            "ecosystem": "pypi"
          },
          {
            "name": "scipy",
            "direct": true,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "scipy",
            "direct": true,
            "version": "1.16.3",
            "ecosystem": "pypi"
          },
          {
            "name": "statsmodels",
            "direct": true,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "statsmodels",
            "direct": true,
            "version": "0.14.5",
            "ecosystem": "pypi"
          },
          {
            "name": "tabulate",
            "direct": true,
            "version": "0.9.0",
            "ecosystem": "pypi"
          },
          {
            "name": "tomli-w",
            "direct": true,
            "version": "1.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "typer",
            "direct": true,
            "version": "0.19.2",
            "ecosystem": "pypi"
          },
          {
            "name": "xmltodict",
            "direct": true,
            "version": "1.0.2",
            "ecosystem": "pypi"
          },
          {
            "name": "github.com/atotto/clipboard",
            "direct": false,
            "version": "v0.1.4",
            "ecosystem": "go"
          },
          {
            "name": "github.com/aymanbagabas/go-osc52/v2",
            "direct": false,
            "version": "v2.0.1",
            "ecosystem": "go"
          },
          {
            "name": "github.com/aymerick/douceur",
            "direct": false,
            "version": "v0.2.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/charmbracelet/colorprofile",
            "direct": false,
            "version": "v0.4.2",
            "ecosystem": "go"
          },
          {
            "name": "github.com/charmbracelet/lipgloss",
            "direct": false,
            "version": "v1.1.1-0.20250404203927-76690c660834",
            "ecosystem": "go"
          },
          {
            "name": "github.com/charmbracelet/ultraviolet",
            "direct": false,
            "version": "v0.0.0-20260205113103-524a6607adb8",
            "ecosystem": "go"
          },
          {
            "name": "github.com/charmbracelet/x/ansi",
            "direct": false,
            "version": "v0.11.6",
            "ecosystem": "go"
          },
          {
            "name": "github.com/charmbracelet/x/cellbuf",
            "direct": false,
            "version": "v0.0.15",
            "ecosystem": "go"
          },
          {
            "name": "github.com/charmbracelet/x/exp/slice",
            "direct": false,
            "version": "v0.0.0-20250327172914-2fdc97757edf",
            "ecosystem": "go"
          },
          {
            "name": "github.com/charmbracelet/x/term",
            "direct": false,
            "version": "v0.2.2",
            "ecosystem": "go"
          },
          {
            "name": "github.com/charmbracelet/x/termios",
            "direct": false,
            "version": "v0.1.1",
            "ecosystem": "go"
          },
          {
            "name": "github.com/charmbracelet/x/windows",
            "direct": false,
            "version": "v0.2.2",
            "ecosystem": "go"
          },
          {
            "name": "github.com/clipperhouse/displaywidth",
            "direct": false,
            "version": "v0.11.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/clipperhouse/uax29/v2",
            "direct": false,
            "version": "v2.7.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/dlclark/regexp2",
            "direct": false,
            "version": "v1.11.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/gorilla/css",
            "direct": false,
            "version": "v1.0.1",
            "ecosystem": "go"
          },
          {
            "name": "github.com/lucasb-eyer/go-colorful",
            "direct": false,
            "version": "v1.3.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/mattn/go-isatty",
            "direct": false,
            "version": "v0.0.20",
            "ecosystem": "go"
          },
          {
            "name": "github.com/mattn/go-runewidth",
            "direct": false,
            "version": "v0.0.20",
            "ecosystem": "go"
          },
          {
            "name": "github.com/microcosm-cc/bluemonday",
            "direct": false,
            "version": "v1.0.27",
            "ecosystem": "go"
          },
          {
            "name": "github.com/muesli/cancelreader",
            "direct": false,
            "version": "v0.2.2",
            "ecosystem": "go"
          },
          {
            "name": "github.com/muesli/reflow",
            "direct": false,
            "version": "v0.3.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/muesli/termenv",
            "direct": false,
            "version": "v0.16.0",
            "ecosystem": "go"
          },
          {
            "name": "github.com/rivo/uniseg",
            "direct": false,
            "version": "v0.4.7",
            "ecosystem": "go"
          },
          {
            "name": "github.com/xo/terminfo",
            "direct": false,
            "version": "v0.0.0-20220910002029-abceb7e1c41e",
            "ecosystem": "go"
          },
          {
            "name": "github.com/yuin/goldmark",
            "direct": false,
            "version": "v1.7.8",
            "ecosystem": "go"
          },
          {
            "name": "github.com/yuin/goldmark-emoji",
            "direct": false,
            "version": "v1.0.5",
            "ecosystem": "go"
          },
          {
            "name": "golang.org/x/net",
            "direct": false,
            "version": "v0.33.0",
            "ecosystem": "go"
          },
          {
            "name": "golang.org/x/sync",
            "direct": false,
            "version": "v0.19.0",
            "ecosystem": "go"
          },
          {
            "name": "golang.org/x/sys",
            "direct": false,
            "version": "v0.41.0",
            "ecosystem": "go"
          },
          {
            "name": "golang.org/x/text",
            "direct": false,
            "version": "v0.24.0",
            "ecosystem": "go"
          },
          {
            "name": "accelerate",
            "direct": false,
            "version": "1.11.0",
            "ecosystem": "pypi"
          },
          {
            "name": "aiohappyeyeballs",
            "direct": false,
            "version": "2.6.1",
            "ecosystem": "pypi"
          },
          {
            "name": "aiohttp",
            "direct": false,
            "version": "3.13.2",
            "ecosystem": "pypi"
          },
          {
            "name": "aiosignal",
            "direct": false,
            "version": "1.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "annotated-doc",
            "direct": false,
            "version": "0.0.4",
            "ecosystem": "pypi"
          },
          {
            "name": "annotated-types",
            "direct": false,
            "version": "0.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "annoy",
            "direct": false,
            "version": "1.17.3",
            "ecosystem": "pypi"
          },
          {
            "name": "ansicolors",
            "direct": false,
            "version": "1.1.8",
            "ecosystem": "pypi"
          },
          {
            "name": "anthropic",
            "direct": false,
            "version": "0.79.0",
            "ecosystem": "pypi"
          },
          {
            "name": "antlr4-python3-runtime",
            "direct": false,
            "version": "4.9.3",
            "ecosystem": "pypi"
          },
          {
            "name": "anyio",
            "direct": false,
            "version": "4.11.0",
            "ecosystem": "pypi"
          },
          {
            "name": "array-api-compat",
            "direct": false,
            "version": "1.12.0",
            "ecosystem": "pypi"
          },
          {
            "name": "astroid",
            "direct": false,
            "version": "4.0.2",
            "ecosystem": "pypi"
          },
          {
            "name": "attrs",
            "direct": false,
            "version": "25.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "autograd",
            "direct": false,
            "version": "1.8.0",
            "ecosystem": "pypi"
          },
          {
            "name": "autograd-gamma",
            "direct": false,
            "version": "0.5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "azure-ai-agents",
            "direct": false,
            "version": "1.2.0b6",
            "ecosystem": "pypi"
          },
          {
            "name": "azure-ai-inference",
            "direct": false,
            "version": "1.0.0b9",
            "ecosystem": "pypi"
          },
          {
            "name": "azure-ai-projects",
            "direct": false,
            "version": "1.1.0b4",
            "ecosystem": "pypi"
          },
          {
            "name": "azure-common",
            "direct": false,
            "version": "1.1.28",
            "ecosystem": "pypi"
          },
          {
            "name": "azure-core",
            "direct": false,
            "version": "1.38.1",
            "ecosystem": "pypi"
          },
          {
            "name": "azure-core-tracing-opentelemetry",
            "direct": false,
            "version": "1.0.0b12",
            "ecosystem": "pypi"
          },
          {
            "name": "azure-cosmos",
            "direct": false,
            "version": "4.14.6",
            "ecosystem": "pypi"
          },
          {
            "name": "azure-identity",
            "direct": false,
            "version": "1.25.2",
            "ecosystem": "pypi"
          },
          {
            "name": "azure-search-documents",
            "direct": false,
            "version": "11.6.0",
            "ecosystem": "pypi"
          },
          {
            "name": "azure-storage-blob",
            "direct": false,
            "version": "12.28.0",
            "ecosystem": "pypi"
          },
          {
            "name": "babel",
            "direct": false,
            "version": "2.17.0",
            "ecosystem": "pypi"
          },
          {
            "name": "backoff",
            "direct": false,
            "version": "2.2.1",
            "ecosystem": "pypi"
          },
          {
            "name": "backrefs",
            "direct": false,
            "version": "6.1",
            "ecosystem": "pypi"
          },
          {
            "name": "bandit",
            "direct": false,
            "version": "1.9.1",
            "ecosystem": "pypi"
          },
          {
            "name": "bcrypt",
            "direct": false,
            "version": "5.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "beautifulsoup4",
            "direct": false,
            "version": "4.14.2",
            "ecosystem": "pypi"
          },
          {
            "name": "bed-reader",
            "direct": false,
            "version": "1.0.6",
            "ecosystem": "pypi"
          },
          {
            "name": "black",
            "direct": false,
            "version": "25.11.0",
            "ecosystem": "pypi"
          },
          {
            "name": "blosc2",
            "direct": false,
            "version": "3.11.1",
            "ecosystem": "pypi"
          },
          {
            "name": "boto3",
            "direct": false,
            "version": "1.42.49",
            "ecosystem": "pypi"
          },
          {
            "name": "botocore",
            "direct": false,
            "version": "1.42.49",
            "ecosystem": "pypi"
          },
          {
            "name": "build",
            "direct": false,
            "version": "1.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "bump2version",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "bumpversion",
            "direct": false,
            "version": "0.6.0",
            "ecosystem": "pypi"
          },
          {
            "name": "certifi",
            "direct": false,
            "version": "2025.11.12",
            "ecosystem": "pypi"
          },
          {
            "name": "cffi",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "cfgv",
            "direct": false,
            "version": "3.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "charset-normalizer",
            "direct": false,
            "version": "3.4.4",
            "ecosystem": "pypi"
          },
          {
            "name": "choreographer",
            "direct": false,
            "version": "1.2.1",
            "ecosystem": "pypi"
          },
          {
            "name": "chromadb",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "chromadb",
            "direct": false,
            "version": "1.5.2",
            "ecosystem": "pypi"
          },
          {
            "name": "click",
            "direct": false,
            "version": "8.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "cloudpickle",
            "direct": false,
            "version": "3.1.2",
            "ecosystem": "pypi"
          },
          {
            "name": "cohere",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "cohere",
            "direct": false,
            "version": "6.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "colorama",
            "direct": false,
            "version": "0.4.6",
            "ecosystem": "pypi"
          },
          {
            "name": "coloredlogs",
            "direct": false,
            "version": "15.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "colorlog",
            "direct": false,
            "version": "6.10.1",
            "ecosystem": "pypi"
          },
          {
            "name": "contourpy",
            "direct": false,
            "version": "1.3.3",
            "ecosystem": "pypi"
          },
          {
            "name": "coverage",
            "direct": false,
            "version": "7.12.0",
            "ecosystem": "pypi"
          },
          {
            "name": "crc32c",
            "direct": false,
            "version": "2.8",
            "ecosystem": "pypi"
          },
          {
            "name": "cryptography",
            "direct": false,
            "version": "46.0.3",
            "ecosystem": "pypi"
          },
          {
            "name": "cycler",
            "direct": false,
            "version": "0.12.1",
            "ecosystem": "pypi"
          },
          {
            "name": "cython",
            "direct": false,
            "version": "3.2.1",
            "ecosystem": "pypi"
          },
          {
            "name": "cyvcf2",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "cyvcf2",
            "direct": false,
            "version": "0.31.4",
            "ecosystem": "pypi"
          },
          {
            "name": "dask",
            "direct": false,
            "version": "2026.1.2",
            "ecosystem": "pypi"
          },
          {
            "name": "dask-glm",
            "direct": false,
            "version": "0.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "dask-ml",
            "direct": false,
            "version": "2025.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "dill",
            "direct": false,
            "version": "0.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "distlib",
            "direct": false,
            "version": "0.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "distributed",
            "direct": false,
            "version": "2026.1.2",
            "ecosystem": "pypi"
          },
          {
            "name": "distro",
            "direct": false,
            "version": "1.9.0",
            "ecosystem": "pypi"
          },
          {
            "name": "docling",
            "direct": false,
            "version": "2.62.0",
            "ecosystem": "pypi"
          },
          {
            "name": "docling-core",
            "direct": false,
            "version": "2.51.1",
            "ecosystem": "pypi"
          },
          {
            "name": "docling-ibm-models",
            "direct": false,
            "version": "3.10.2",
            "ecosystem": "pypi"
          },
          {
            "name": "docling-parse",
            "direct": false,
            "version": "4.7.1",
            "ecosystem": "pypi"
          },
          {
            "name": "docstring-parser",
            "direct": false,
            "version": "0.17.0",
            "ecosystem": "pypi"
          },
          {
            "name": "docutils",
            "direct": false,
            "version": "0.22.3",
            "ecosystem": "pypi"
          },
          {
            "name": "donfig",
            "direct": false,
            "version": "0.8.1.post1",
            "ecosystem": "pypi"
          },
          {
            "name": "durationpy",
            "direct": false,
            "version": "0.10",
            "ecosystem": "pypi"
          },
          {
            "name": "entrypoints",
            "direct": false,
            "version": "0.4",
            "ecosystem": "pypi"
          },
          {
            "name": "et-xmlfile",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "execnet",
            "direct": false,
            "version": "2.1.2",
            "ecosystem": "pypi"
          },
          {
            "name": "factory-boy",
            "direct": false,
            "version": "3.3.3",
            "ecosystem": "pypi"
          },
          {
            "name": "faker",
            "direct": false,
            "version": "38.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "fakeredis",
            "direct": false,
            "version": "2.32.1",
            "ecosystem": "pypi"
          },
          {
            "name": "fastapi",
            "direct": false,
            "version": "0.121.2",
            "ecosystem": "pypi"
          },
          {
            "name": "fastavro",
            "direct": false,
            "version": "1.12.2",
            "ecosystem": "pypi"
          },
          {
            "name": "fastjsonschema",
            "direct": false,
            "version": "2.21.2",
            "ecosystem": "pypi"
          },
          {
            "name": "filelock",
            "direct": false,
            "version": "3.20.0",
            "ecosystem": "pypi"
          },
          {
            "name": "filetype",
            "direct": false,
            "version": "1.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "flake8",
            "direct": false,
            "version": "7.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "flatbuffers",
            "direct": false,
            "version": "25.12.19",
            "ecosystem": "pypi"
          },
          {
            "name": "fonttools",
            "direct": false,
            "version": "4.60.1",
            "ecosystem": "pypi"
          },
          {
            "name": "formulaic",
            "direct": false,
            "version": "1.2.1",
            "ecosystem": "pypi"
          },
          {
            "name": "formulaic-contrasts",
            "direct": false,
            "version": "1.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "freezegun",
            "direct": false,
            "version": "1.5.5",
            "ecosystem": "pypi"
          },
          {
            "name": "frozenlist",
            "direct": false,
            "version": "1.8.0",
            "ecosystem": "pypi"
          },
          {
            "name": "fsspec",
            "direct": false,
            "version": "2025.10.0",
            "ecosystem": "pypi"
          },
          {
            "name": "ftputil",
            "direct": false,
            "version": "5.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "genebe",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "genebe",
            "direct": false,
            "version": "0.2.1",
            "ecosystem": "pypi"
          },
          {
            "name": "ghp-import",
            "direct": false,
            "version": "2.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "google-auth",
            "direct": false,
            "version": "2.48.0",
            "ecosystem": "pypi"
          },
          {
            "name": "google-genai",
            "direct": false,
            "version": "1.63.0",
            "ecosystem": "pypi"
          },
          {
            "name": "googleapis-common-protos",
            "direct": false,
            "version": "1.72.0",
            "ecosystem": "pypi"
          },
          {
            "name": "grimp",
            "direct": false,
            "version": "3.14",
            "ecosystem": "pypi"
          },
          {
            "name": "grpcio",
            "direct": false,
            "version": "1.76.0",
            "ecosystem": "pypi"
          },
          {
            "name": "h11",
            "direct": false,
            "version": "0.16.0",
            "ecosystem": "pypi"
          },
          {
            "name": "harmonypy",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "harmonypy",
            "direct": false,
            "version": "0.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "hf-xet",
            "direct": false,
            "version": "1.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "httpcore",
            "direct": false,
            "version": "1.0.9",
            "ecosystem": "pypi"
          },
          {
            "name": "httpretty",
            "direct": false,
            "version": "1.1.4",
            "ecosystem": "pypi"
          },
          {
            "name": "httptools",
            "direct": false,
            "version": "0.7.1",
            "ecosystem": "pypi"
          },
          {
            "name": "huggingface-hub",
            "direct": false,
            "version": "0.36.0",
            "ecosystem": "pypi"
          },
          {
            "name": "humanfriendly",
            "direct": false,
            "version": "10.0",
            "ecosystem": "pypi"
          },
          {
            "name": "hyperopt",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "id",
            "direct": false,
            "version": "1.5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "identify",
            "direct": false,
            "version": "2.6.15",
            "ecosystem": "pypi"
          },
          {
            "name": "idna",
            "direct": false,
            "version": "3.11",
            "ecosystem": "pypi"
          },
          {
            "name": "igraph",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "igraph",
            "direct": false,
            "version": "1.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "imageio",
            "direct": false,
            "version": "2.37.2",
            "ecosystem": "pypi"
          },
          {
            "name": "imbalanced-learn",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "import-linter",
            "direct": false,
            "version": "2.10",
            "ecosystem": "pypi"
          },
          {
            "name": "importlib-metadata",
            "direct": false,
            "version": "8.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "importlib-resources",
            "direct": false,
            "version": "6.5.2",
            "ecosystem": "pypi"
          },
          {
            "name": "iniconfig",
            "direct": false,
            "version": "2.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "interface-meta",
            "direct": false,
            "version": "1.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "interpret",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "isodate",
            "direct": false,
            "version": "0.7.2",
            "ecosystem": "pypi"
          },
          {
            "name": "isort",
            "direct": false,
            "version": "7.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jaraco-classes",
            "direct": false,
            "version": "3.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jaraco-context",
            "direct": false,
            "version": "6.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "jaraco-functools",
            "direct": false,
            "version": "4.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jeepney",
            "direct": false,
            "version": "0.9.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jiter",
            "direct": false,
            "version": "0.12.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jmespath",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "joblib",
            "direct": false,
            "version": "1.5.2",
            "ecosystem": "pypi"
          },
          {
            "name": "jsonlines",
            "direct": false,
            "version": "4.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jsonpatch",
            "direct": false,
            "version": "1.33",
            "ecosystem": "pypi"
          },
          {
            "name": "jsonpointer",
            "direct": false,
            "version": "3.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jsonref",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jsonschema",
            "direct": false,
            "version": "4.25.1",
            "ecosystem": "pypi"
          },
          {
            "name": "jsonschema-specifications",
            "direct": false,
            "version": "2025.9.1",
            "ecosystem": "pypi"
          },
          {
            "name": "jupyter-client",
            "direct": false,
            "version": "8.8.0",
            "ecosystem": "pypi"
          },
          {
            "name": "jupyter-core",
            "direct": false,
            "version": "5.9.1",
            "ecosystem": "pypi"
          },
          {
            "name": "keyring",
            "direct": false,
            "version": "25.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "kiwisolver",
            "direct": false,
            "version": "1.4.9",
            "ecosystem": "pypi"
          },
          {
            "name": "kubernetes",
            "direct": false,
            "version": "35.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain",
            "direct": false,
            "version": "1.2.10",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-anthropic",
            "direct": false,
            "version": "1.3.3",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-aws",
            "direct": false,
            "version": "1.2.5",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-azure-ai",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-google-genai",
            "direct": false,
            "version": "4.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-ollama",
            "direct": false,
            "version": "0.3.10",
            "ecosystem": "pypi"
          },
          {
            "name": "langchain-openai",
            "direct": false,
            "version": "1.1.9",
            "ecosystem": "pypi"
          },
          {
            "name": "langfuse",
            "direct": false,
            "version": "3.10.0",
            "ecosystem": "pypi"
          },
          {
            "name": "langgraph-checkpoint",
            "direct": false,
            "version": "2.1.2",
            "ecosystem": "pypi"
          },
          {
            "name": "langgraph-prebuilt",
            "direct": false,
            "version": "1.0.7",
            "ecosystem": "pypi"
          },
          {
            "name": "langgraph-sdk",
            "direct": false,
            "version": "0.3.6",
            "ecosystem": "pypi"
          },
          {
            "name": "langsmith",
            "direct": false,
            "version": "0.3.45",
            "ecosystem": "pypi"
          },
          {
            "name": "langsmith",
            "direct": false,
            "version": "0.4.43",
            "ecosystem": "pypi"
          },
          {
            "name": "latex2mathml",
            "direct": false,
            "version": "3.78.1",
            "ecosystem": "pypi"
          },
          {
            "name": "lazy-loader",
            "direct": false,
            "version": "0.4",
            "ecosystem": "pypi"
          },
          {
            "name": "legacy-api-wrap",
            "direct": false,
            "version": "1.5",
            "ecosystem": "pypi"
          },
          {
            "name": "leidenalg",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "leidenalg",
            "direct": false,
            "version": "0.11.0",
            "ecosystem": "pypi"
          },
          {
            "name": "lifelines",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "lifelines",
            "direct": false,
            "version": "0.30.1",
            "ecosystem": "pypi"
          },
          {
            "name": "linkify-it-py",
            "direct": false,
            "version": "2.0.3",
            "ecosystem": "pypi"
          },
          {
            "name": "llvmlite",
            "direct": false,
            "version": "0.44.0",
            "ecosystem": "pypi"
          },
          {
            "name": "lobster-ai",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "lobster-drug-discovery",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "lobster-drug-discovery",
            "direct": false,
            "version": "1.1.420",
            "ecosystem": "pypi"
          },
          {
            "name": "lobster-genomics",
            "direct": false,
            "version": "1.1.420",
            "ecosystem": "pypi"
          },
          {
            "name": "lobster-metabolomics",
            "direct": false,
            "version": "1.1.420",
            "ecosystem": "pypi"
          },
          {
            "name": "lobster-ml",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "lobster-proteomics",
            "direct": false,
            "version": "1.1.420",
            "ecosystem": "pypi"
          },
          {
            "name": "lobster-research",
            "direct": false,
            "version": "1.1.420",
            "ecosystem": "pypi"
          },
          {
            "name": "lobster-transcriptomics",
            "direct": false,
            "version": "1.1.420",
            "ecosystem": "pypi"
          },
          {
            "name": "lobster-vector",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "lobster-vector",
            "direct": false,
            "version": "1.1.420",
            "ecosystem": "pypi"
          },
          {
            "name": "lobster-visualization",
            "direct": false,
            "version": "1.1.420",
            "ecosystem": "pypi"
          },
          {
            "name": "locket",
            "direct": false,
            "version": "1.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "logistro",
            "direct": false,
            "version": "2.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "markdown",
            "direct": false,
            "version": "3.10",
            "ecosystem": "pypi"
          },
          {
            "name": "markdown-it-py",
            "direct": false,
            "version": "4.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "marko",
            "direct": false,
            "version": "2.2.1",
            "ecosystem": "pypi"
          },
          {
            "name": "markupsafe",
            "direct": false,
            "version": "3.0.3",
            "ecosystem": "pypi"
          },
          {
            "name": "mccabe",
            "direct": false,
            "version": "0.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "mdit-py-plugins",
            "direct": false,
            "version": "0.5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "mdurl",
            "direct": false,
            "version": "0.1.2",
            "ecosystem": "pypi"
          },
          {
            "name": "meeko",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "meeko",
            "direct": false,
            "version": "0.7.1",
            "ecosystem": "pypi"
          },
          {
            "name": "memory-profiler",
            "direct": false,
            "version": "0.61.0",
            "ecosystem": "pypi"
          },
          {
            "name": "mergedeep",
            "direct": false,
            "version": "1.3.4",
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs",
            "direct": false,
            "version": "1.6.1",
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-get-deps",
            "direct": false,
            "version": "0.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-material",
            "direct": false,
            "version": "9.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "mkdocs-material-extensions",
            "direct": false,
            "version": "1.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "mmh3",
            "direct": false,
            "version": "5.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "mofapy2",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "more-itertools",
            "direct": false,
            "version": "10.8.0",
            "ecosystem": "pypi"
          },
          {
            "name": "moto",
            "direct": false,
            "version": "5.1.17",
            "ecosystem": "pypi"
          },
          {
            "name": "mpire",
            "direct": false,
            "version": "2.10.2",
            "ecosystem": "pypi"
          },
          {
            "name": "mpmath",
            "direct": false,
            "version": "1.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "msal",
            "direct": false,
            "version": "1.34.0",
            "ecosystem": "pypi"
          },
          {
            "name": "msal-extensions",
            "direct": false,
            "version": "1.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "msgpack",
            "direct": false,
            "version": "1.1.2",
            "ecosystem": "pypi"
          },
          {
            "name": "multidict",
            "direct": false,
            "version": "6.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "multipledispatch",
            "direct": false,
            "version": "1.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "multiprocess",
            "direct": false,
            "version": "0.70.18",
            "ecosystem": "pypi"
          },
          {
            "name": "mypy",
            "direct": false,
            "version": "1.18.2",
            "ecosystem": "pypi"
          },
          {
            "name": "mypy-extensions",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "narwhals",
            "direct": false,
            "version": "2.12.0",
            "ecosystem": "pypi"
          },
          {
            "name": "natsort",
            "direct": false,
            "version": "8.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "nbclient",
            "direct": false,
            "version": "0.10.2",
            "ecosystem": "pypi"
          },
          {
            "name": "ndindex",
            "direct": false,
            "version": "1.10.0",
            "ecosystem": "pypi"
          },
          {
            "name": "networkx",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "networkx",
            "direct": false,
            "version": "3.5",
            "ecosystem": "pypi"
          },
          {
            "name": "nh3",
            "direct": false,
            "version": "0.3.2",
            "ecosystem": "pypi"
          },
          {
            "name": "nodeenv",
            "direct": false,
            "version": "1.9.1",
            "ecosystem": "pypi"
          },
          {
            "name": "numba",
            "direct": false,
            "version": "0.61.2",
            "ecosystem": "pypi"
          },
          {
            "name": "numcodecs",
            "direct": false,
            "version": "0.16.3",
            "ecosystem": "pypi"
          },
          {
            "name": "numexpr",
            "direct": false,
            "version": "2.14.1",
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-cublas-cu12",
            "direct": false,
            "version": "12.8.4.1",
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-cuda-cupti-cu12",
            "direct": false,
            "version": "12.8.90",
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-cuda-nvrtc-cu12",
            "direct": false,
            "version": "12.8.93",
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-cuda-runtime-cu12",
            "direct": false,
            "version": "12.8.90",
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-cudnn-cu12",
            "direct": false,
            "version": "9.10.2.21",
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-cufft-cu12",
            "direct": false,
            "version": "11.3.3.83",
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-cufile-cu12",
            "direct": false,
            "version": "1.13.1.3",
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-curand-cu12",
            "direct": false,
            "version": "10.3.9.90",
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-cusolver-cu12",
            "direct": false,
            "version": "11.7.3.90",
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-cusparse-cu12",
            "direct": false,
            "version": "12.5.8.93",
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-cusparselt-cu12",
            "direct": false,
            "version": "0.7.1",
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-nccl-cu12",
            "direct": false,
            "version": "2.27.5",
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-nvjitlink-cu12",
            "direct": false,
            "version": "12.8.93",
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-nvshmem-cu12",
            "direct": false,
            "version": "3.3.20",
            "ecosystem": "pypi"
          },
          {
            "name": "nvidia-nvtx-cu12",
            "direct": false,
            "version": "12.8.90",
            "ecosystem": "pypi"
          },
          {
            "name": "oauthlib",
            "direct": false,
            "version": "3.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "obonet",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "obonet",
            "direct": false,
            "version": "1.1.1",
            "ecosystem": "pypi"
          },
          {
            "name": "ocrmac",
            "direct": false,
            "version": "1.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "ollama",
            "direct": false,
            "version": "0.6.1",
            "ecosystem": "pypi"
          },
          {
            "name": "omegaconf",
            "direct": false,
            "version": "2.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "onnxruntime",
            "direct": false,
            "version": "1.24.2",
            "ecosystem": "pypi"
          },
          {
            "name": "openai",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "openai",
            "direct": false,
            "version": "2.8.1",
            "ecosystem": "pypi"
          },
          {
            "name": "opencv-python",
            "direct": false,
            "version": "4.11.0.86",
            "ecosystem": "pypi"
          },
          {
            "name": "opentelemetry-api",
            "direct": false,
            "version": "1.38.0",
            "ecosystem": "pypi"
          },
          {
            "name": "opentelemetry-exporter-otlp-proto-common",
            "direct": false,
            "version": "1.38.0",
            "ecosystem": "pypi"
          },
          {
            "name": "opentelemetry-exporter-otlp-proto-grpc",
            "direct": false,
            "version": "1.38.0",
            "ecosystem": "pypi"
          },
          {
            "name": "opentelemetry-exporter-otlp-proto-http",
            "direct": false,
            "version": "1.38.0",
            "ecosystem": "pypi"
          },
          {
            "name": "opentelemetry-proto",
            "direct": false,
            "version": "1.38.0",
            "ecosystem": "pypi"
          },
          {
            "name": "opentelemetry-sdk",
            "direct": false,
            "version": "1.38.0",
            "ecosystem": "pypi"
          },
          {
            "name": "opentelemetry-semantic-conventions",
            "direct": false,
            "version": "0.59b0",
            "ecosystem": "pypi"
          },
          {
            "name": "orjson",
            "direct": false,
            "version": "3.11.4",
            "ecosystem": "pypi"
          },
          {
            "name": "ormsgpack",
            "direct": false,
            "version": "1.12.0",
            "ecosystem": "pypi"
          },
          {
            "name": "overrides",
            "direct": false,
            "version": "7.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "paginate",
            "direct": false,
            "version": "0.5.7",
            "ecosystem": "pypi"
          },
          {
            "name": "partd",
            "direct": false,
            "version": "1.4.2",
            "ecosystem": "pypi"
          },
          {
            "name": "pathspec",
            "direct": false,
            "version": "0.12.1",
            "ecosystem": "pypi"
          },
          {
            "name": "patsy",
            "direct": false,
            "version": "1.0.2",
            "ecosystem": "pypi"
          },
          {
            "name": "peptides",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "peptides",
            "direct": false,
            "version": "0.5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pillow",
            "direct": false,
            "version": "11.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pip",
            "direct": false,
            "version": "26.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pipdeptree",
            "direct": false,
            "version": "2.30.0",
            "ecosystem": "pypi"
          },
          {
            "name": "platformdirs",
            "direct": false,
            "version": "4.5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pluggy",
            "direct": false,
            "version": "1.6.0",
            "ecosystem": "pypi"
          },
          {
            "name": "polars",
            "direct": false,
            "version": "1.35.2",
            "ecosystem": "pypi"
          },
          {
            "name": "polars-runtime-32",
            "direct": false,
            "version": "1.35.2",
            "ecosystem": "pypi"
          },
          {
            "name": "polyfactory",
            "direct": false,
            "version": "3.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "posthog",
            "direct": false,
            "version": "5.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pre-commit",
            "direct": false,
            "version": "4.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "propcache",
            "direct": false,
            "version": "0.4.1",
            "ecosystem": "pypi"
          },
          {
            "name": "protobuf",
            "direct": false,
            "version": "6.33.1",
            "ecosystem": "pypi"
          },
          {
            "name": "py-cpuinfo",
            "direct": false,
            "version": "9.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pyarrow",
            "direct": false,
            "version": "22.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pyasn1",
            "direct": false,
            "version": "0.6.2",
            "ecosystem": "pypi"
          },
          {
            "name": "pyasn1-modules",
            "direct": false,
            "version": "0.4.2",
            "ecosystem": "pypi"
          },
          {
            "name": "pybase64",
            "direct": false,
            "version": "1.4.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pyclipper",
            "direct": false,
            "version": "1.3.0.post6",
            "ecosystem": "pypi"
          },
          {
            "name": "pycodestyle",
            "direct": false,
            "version": "2.14.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pycparser",
            "direct": false,
            "version": "2.23",
            "ecosystem": "pypi"
          },
          {
            "name": "pydantic",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pydantic",
            "direct": false,
            "version": "2.12.4",
            "ecosystem": "pypi"
          },
          {
            "name": "pydantic-core",
            "direct": false,
            "version": "2.41.5",
            "ecosystem": "pypi"
          },
          {
            "name": "pydantic-settings",
            "direct": false,
            "version": "2.12.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pydeseq2",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pydeseq2",
            "direct": false,
            "version": "0.5.2",
            "ecosystem": "pypi"
          },
          {
            "name": "pyflakes",
            "direct": false,
            "version": "3.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pygments",
            "direct": false,
            "version": "2.19.2",
            "ecosystem": "pypi"
          },
          {
            "name": "pyjwt",
            "direct": false,
            "version": "2.11.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pylatexenc",
            "direct": false,
            "version": "2.10",
            "ecosystem": "pypi"
          },
          {
            "name": "pylint",
            "direct": false,
            "version": "4.0.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pymdown-extensions",
            "direct": false,
            "version": "10.17.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pymmh3",
            "direct": false,
            "version": "0.0.5",
            "ecosystem": "pypi"
          },
          {
            "name": "pynndescent",
            "direct": false,
            "version": "0.5.13",
            "ecosystem": "pypi"
          },
          {
            "name": "pyobjc-core",
            "direct": false,
            "version": "12.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pyobjc-framework-cocoa",
            "direct": false,
            "version": "12.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pyobjc-framework-coreml",
            "direct": false,
            "version": "12.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pyobjc-framework-quartz",
            "direct": false,
            "version": "12.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pyobjc-framework-vision",
            "direct": false,
            "version": "12.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pyparsing",
            "direct": false,
            "version": "3.2.5",
            "ecosystem": "pypi"
          },
          {
            "name": "pypdfium2",
            "direct": false,
            "version": "4.30.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pypika",
            "direct": false,
            "version": "0.51.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pyproject-hooks",
            "direct": false,
            "version": "1.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pyreadline3",
            "direct": false,
            "version": "3.5.4",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pytest",
            "direct": false,
            "version": "9.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-asyncio",
            "direct": false,
            "version": "1.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-benchmark",
            "direct": false,
            "version": "5.2.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-cov",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-cov",
            "direct": false,
            "version": "7.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-html",
            "direct": false,
            "version": "4.1.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-json-report",
            "direct": false,
            "version": "1.5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-metadata",
            "direct": false,
            "version": "3.1.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-mock",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-mock",
            "direct": false,
            "version": "3.15.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-timeout",
            "direct": false,
            "version": "2.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pytest-xdist",
            "direct": false,
            "version": "3.8.0",
            "ecosystem": "pypi"
          },
          {
            "name": "python-dateutil",
            "direct": false,
            "version": "2.9.0.post0",
            "ecosystem": "pypi"
          },
          {
            "name": "python-docx",
            "direct": false,
            "version": "1.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "python-multipart",
            "direct": false,
            "version": "0.0.20",
            "ecosystem": "pypi"
          },
          {
            "name": "python-pptx",
            "direct": false,
            "version": "1.0.2",
            "ecosystem": "pypi"
          },
          {
            "name": "pytokens",
            "direct": false,
            "version": "0.3.0",
            "ecosystem": "pypi"
          },
          {
            "name": "pytz",
            "direct": false,
            "version": "2025.2",
            "ecosystem": "pypi"
          },
          {
            "name": "pywin32",
            "direct": false,
            "version": "311",
            "ecosystem": "pypi"
          },
          {
            "name": "pywin32-ctypes",
            "direct": false,
            "version": "0.2.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pyyaml",
            "direct": false,
            "version": "6.0.3",
            "ecosystem": "pypi"
          },
          {
            "name": "pyyaml-env-tag",
            "direct": false,
            "version": "1.1",
            "ecosystem": "pypi"
          },
          {
            "name": "pyzmq",
            "direct": false,
            "version": "27.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "rapidfuzz",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "rapidocr",
            "direct": false,
            "version": "3.4.2",
            "ecosystem": "pypi"
          },
          {
            "name": "rdkit",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "rdkit",
            "direct": false,
            "version": "2025.9.6",
            "ecosystem": "pypi"
          },
          {
            "name": "readme-renderer",
            "direct": false,
            "version": "44.0",
            "ecosystem": "pypi"
          },
          {
            "name": "redis",
            "direct": false,
            "version": "7.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "referencing",
            "direct": false,
            "version": "0.37.0",
            "ecosystem": "pypi"
          },
          {
            "name": "regex",
            "direct": false,
            "version": "2025.11.3",
            "ecosystem": "pypi"
          },
          {
            "name": "requests-oauthlib",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "requests-toolbelt",
            "direct": false,
            "version": "1.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "responses",
            "direct": false,
            "version": "0.25.8",
            "ecosystem": "pypi"
          },
          {
            "name": "rfc3986",
            "direct": false,
            "version": "2.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "rispy",
            "direct": false,
            "version": "0.10.0",
            "ecosystem": "pypi"
          },
          {
            "name": "rpds-py",
            "direct": false,
            "version": "0.29.0",
            "ecosystem": "pypi"
          },
          {
            "name": "rsa",
            "direct": false,
            "version": "4.9.1",
            "ecosystem": "pypi"
          },
          {
            "name": "rtree",
            "direct": false,
            "version": "1.4.1",
            "ecosystem": "pypi"
          },
          {
            "name": "ruff",
            "direct": false,
            "version": "0.14.5",
            "ecosystem": "pypi"
          },
          {
            "name": "s3transfer",
            "direct": false,
            "version": "0.16.0",
            "ecosystem": "pypi"
          },
          {
            "name": "safetensors",
            "direct": false,
            "version": "0.6.2",
            "ecosystem": "pypi"
          },
          {
            "name": "scanpy",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "scanpy",
            "direct": false,
            "version": "1.11.5",
            "ecosystem": "pypi"
          },
          {
            "name": "scikit-image",
            "direct": false,
            "version": "0.25.2",
            "ecosystem": "pypi"
          },
          {
            "name": "scikit-misc",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "scikit-misc",
            "direct": false,
            "version": "0.5.2",
            "ecosystem": "pypi"
          },
          {
            "name": "scikit-survival",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "scrublet",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "scrublet",
            "direct": false,
            "version": "0.2.3",
            "ecosystem": "pypi"
          },
          {
            "name": "scvi-tools",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "seaborn",
            "direct": false,
            "version": "0.13.2",
            "ecosystem": "pypi"
          },
          {
            "name": "secretstorage",
            "direct": false,
            "version": "3.4.1",
            "ecosystem": "pypi"
          },
          {
            "name": "semchunk",
            "direct": false,
            "version": "2.2.2",
            "ecosystem": "pypi"
          },
          {
            "name": "sentence-transformers",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "sentence-transformers",
            "direct": false,
            "version": "5.4.1",
            "ecosystem": "pypi"
          },
          {
            "name": "session-info",
            "direct": false,
            "version": "1.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "session-info2",
            "direct": false,
            "version": "0.2.3",
            "ecosystem": "pypi"
          },
          {
            "name": "setuptools",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "setuptools",
            "direct": false,
            "version": "80.9.0",
            "ecosystem": "pypi"
          },
          {
            "name": "sgkit",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "sgkit",
            "direct": false,
            "version": "0.8.0",
            "ecosystem": "pypi"
          },
          {
            "name": "shap",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "shapely",
            "direct": false,
            "version": "2.1.2",
            "ecosystem": "pypi"
          },
          {
            "name": "shellingham",
            "direct": false,
            "version": "1.5.4",
            "ecosystem": "pypi"
          },
          {
            "name": "simplejson",
            "direct": false,
            "version": "3.20.2",
            "ecosystem": "pypi"
          },
          {
            "name": "six",
            "direct": false,
            "version": "1.17.0",
            "ecosystem": "pypi"
          },
          {
            "name": "sniffio",
            "direct": false,
            "version": "1.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "sortedcontainers",
            "direct": false,
            "version": "2.4.0",
            "ecosystem": "pypi"
          },
          {
            "name": "soupsieve",
            "direct": false,
            "version": "2.8",
            "ecosystem": "pypi"
          },
          {
            "name": "sparse",
            "direct": false,
            "version": "0.17.0",
            "ecosystem": "pypi"
          },
          {
            "name": "starlette",
            "direct": false,
            "version": "0.49.3",
            "ecosystem": "pypi"
          },
          {
            "name": "stdlib-list",
            "direct": false,
            "version": "0.12.0",
            "ecosystem": "pypi"
          },
          {
            "name": "stevedore",
            "direct": false,
            "version": "5.5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "sympy",
            "direct": false,
            "version": "1.14.0",
            "ecosystem": "pypi"
          },
          {
            "name": "tables",
            "direct": false,
            "version": "3.10.2",
            "ecosystem": "pypi"
          },
          {
            "name": "tblib",
            "direct": false,
            "version": "3.2.2",
            "ecosystem": "pypi"
          },
          {
            "name": "tenacity",
            "direct": false,
            "version": "9.1.2",
            "ecosystem": "pypi"
          },
          {
            "name": "texttable",
            "direct": false,
            "version": "1.7.0",
            "ecosystem": "pypi"
          },
          {
            "name": "textual",
            "direct": false,
            "version": "6.7.1",
            "ecosystem": "pypi"
          },
          {
            "name": "threadpoolctl",
            "direct": false,
            "version": "3.6.0",
            "ecosystem": "pypi"
          },
          {
            "name": "tifffile",
            "direct": false,
            "version": "2025.10.16",
            "ecosystem": "pypi"
          },
          {
            "name": "tiktoken",
            "direct": false,
            "version": "0.12.0",
            "ecosystem": "pypi"
          },
          {
            "name": "tinynetrc",
            "direct": false,
            "version": "1.3.1",
            "ecosystem": "pypi"
          },
          {
            "name": "tokenizers",
            "direct": false,
            "version": "0.22.1",
            "ecosystem": "pypi"
          },
          {
            "name": "tomlkit",
            "direct": false,
            "version": "0.13.3",
            "ecosystem": "pypi"
          },
          {
            "name": "toolz",
            "direct": false,
            "version": "1.1.0",
            "ecosystem": "pypi"
          },
          {
            "name": "torch",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "torch",
            "direct": false,
            "version": "2.9.1",
            "ecosystem": "pypi"
          },
          {
            "name": "torchvision",
            "direct": false,
            "version": "0.24.1",
            "ecosystem": "pypi"
          },
          {
            "name": "tornado",
            "direct": false,
            "version": "6.5.2",
            "ecosystem": "pypi"
          },
          {
            "name": "tqdm",
            "direct": false,
            "version": "4.67.1",
            "ecosystem": "pypi"
          },
          {
            "name": "traitlets",
            "direct": false,
            "version": "5.14.3",
            "ecosystem": "pypi"
          },
          {
            "name": "transformers",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "transformers",
            "direct": false,
            "version": "4.57.1",
            "ecosystem": "pypi"
          },
          {
            "name": "tree-sitter",
            "direct": false,
            "version": "0.25.2",
            "ecosystem": "pypi"
          },
          {
            "name": "tree-sitter-c",
            "direct": false,
            "version": "0.24.1",
            "ecosystem": "pypi"
          },
          {
            "name": "tree-sitter-java",
            "direct": false,
            "version": "0.23.5",
            "ecosystem": "pypi"
          },
          {
            "name": "tree-sitter-javascript",
            "direct": false,
            "version": "0.25.0",
            "ecosystem": "pypi"
          },
          {
            "name": "tree-sitter-python",
            "direct": false,
            "version": "0.25.0",
            "ecosystem": "pypi"
          },
          {
            "name": "tree-sitter-typescript",
            "direct": false,
            "version": "0.23.2",
            "ecosystem": "pypi"
          },
          {
            "name": "triton",
            "direct": false,
            "version": "3.5.1",
            "ecosystem": "pypi"
          },
          {
            "name": "twine",
            "direct": false,
            "version": "6.2.0",
            "ecosystem": "pypi"
          },
          {
            "name": "types-requests",
            "direct": false,
            "version": "2.33.0.20260408",
            "ecosystem": "pypi"
          },
          {
            "name": "typing-extensions",
            "direct": false,
            "version": "4.15.0",
            "ecosystem": "pypi"
          },
          {
            "name": "typing-inspection",
            "direct": false,
            "version": "0.4.2",
            "ecosystem": "pypi"
          },
          {
            "name": "tzdata",
            "direct": false,
            "version": "2025.2",
            "ecosystem": "pypi"
          },
          {
            "name": "uc-micro-py",
            "direct": false,
            "version": "1.0.3",
            "ecosystem": "pypi"
          },
          {
            "name": "umap-learn",
            "direct": false,
            "version": "0.5.9.post2",
            "ecosystem": "pypi"
          },
          {
            "name": "urllib3",
            "direct": false,
            "version": "2.5.0",
            "ecosystem": "pypi"
          },
          {
            "name": "uuid-utils",
            "direct": false,
            "version": "0.14.0",
            "ecosystem": "pypi"
          },
          {
            "name": "uvicorn",
            "direct": false,
            "version": "0.38.0",
            "ecosystem": "pypi"
          },
          {
            "name": "uvloop",
            "direct": false,
            "version": "0.22.1",
            "ecosystem": "pypi"
          },
          {
            "name": "vina",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "vina",
            "direct": false,
            "version": "1.2.7",
            "ecosystem": "pypi"
          },
          {
            "name": "virtualenv",
            "direct": false,
            "version": "20.35.4",
            "ecosystem": "pypi"
          },
          {
            "name": "watchdog",
            "direct": false,
            "version": "6.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "watchfiles",
            "direct": false,
            "version": "1.1.1",
            "ecosystem": "pypi"
          },
          {
            "name": "wcwidth",
            "direct": false,
            "version": "0.2.14",
            "ecosystem": "pypi"
          },
          {
            "name": "websocket-client",
            "direct": false,
            "version": "1.9.0",
            "ecosystem": "pypi"
          },
          {
            "name": "websockets",
            "direct": false,
            "version": "15.0.1",
            "ecosystem": "pypi"
          },
          {
            "name": "werkzeug",
            "direct": false,
            "version": "3.1.3",
            "ecosystem": "pypi"
          },
          {
            "name": "wheel",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "wheel",
            "direct": false,
            "version": "0.46.3",
            "ecosystem": "pypi"
          },
          {
            "name": "wrapt",
            "direct": false,
            "version": "1.17.3",
            "ecosystem": "pypi"
          },
          {
            "name": "xarray",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "xarray",
            "direct": false,
            "version": "2025.11.0",
            "ecosystem": "pypi"
          },
          {
            "name": "xgboost",
            "direct": false,
            "version": null,
            "ecosystem": "pypi"
          },
          {
            "name": "xlsxwriter",
            "direct": false,
            "version": "3.2.9",
            "ecosystem": "pypi"
          },
          {
            "name": "xxhash",
            "direct": false,
            "version": "3.6.0",
            "ecosystem": "pypi"
          },
          {
            "name": "yarl",
            "direct": false,
            "version": "1.22.0",
            "ecosystem": "pypi"
          },
          {
            "name": "zarr",
            "direct": false,
            "version": "3.1.3",
            "ecosystem": "pypi"
          },
          {
            "name": "zict",
            "direct": false,
            "version": "3.0.0",
            "ecosystem": "pypi"
          },
          {
            "name": "zipp",
            "direct": false,
            "version": "3.23.0",
            "ecosystem": "pypi"
          },
          {
            "name": "zstandard",
            "direct": false,
            "version": "0.23.0",
            "ecosystem": "pypi"
          },
          {
            "name": "zstandard",
            "direct": false,
            "version": "0.25.0",
            "ecosystem": "pypi"
          }
        ],
        "collected": true,
        "truncated": false,
        "total_count": 530,
        "direct_count": 53,
        "indirect_count": 477
      }
    },
    "maintainership": {
      "issues": {
        "open_prs": 4,
        "merged_prs": 6,
        "open_issues": 1,
        "closed_ratio": 0.857,
        "closed_issues": 6,
        "closed_unmerged_prs": 4
      },
      "bus_factor": 1,
      "top_contributors": [
        {
          "type": "User",
          "login": "cewinharhar",
          "commits": 812,
          "avatar_url": "https://avatars.githubusercontent.com/u/64527798?u=becd9ac56d66af3ceaefc0d33438b5890f78ff6c&v=4"
        },
        {
          "type": "User",
          "login": "vmihalis",
          "commits": 2,
          "avatar_url": "https://avatars.githubusercontent.com/u/67660547?u=38f10089309fa3bbb23973ec3b75801dc899a0f2&v=4"
        }
      ],
      "contributors_sampled": 2,
      "top_contributor_share": 0.998
    },
    "quality_signals": {
      "has_ci": true,
      "has_tests": true,
      "ci_workflows": [
        "ci-basic.yml",
        "ci-testing.yml",
        "pr-validation-basic.yml",
        "public-release.yml",
        "publish-packages.yml",
        "publish-tui.yml"
      ],
      "has_docs_dir": true,
      "linter_configs": [],
      "has_editorconfig": false,
      "has_linter_config": false,
      "has_precommit_config": false
    },
    "security_signals": {
      "lockfiles": [
        "go.sum",
        "uv.lock"
      ],
      "scorecard": {
        "checks": [
          {
            "name": "Binary-Artifacts",
            "score": 10,
            "reason": "no binaries found in the repo",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
          },
          {
            "name": "Branch-Protection",
            "score": 0,
            "reason": "branch protection not enabled on development/release branches",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
          },
          {
            "name": "CI-Tests",
            "score": 10,
            "reason": "2 out of 2 merged PRs checked by a CI test -- score normalized to 10",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
          },
          {
            "name": "CII-Best-Practices",
            "score": 0,
            "reason": "no effort to earn an OpenSSF best practices badge detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
          },
          {
            "name": "Code-Review",
            "score": 0,
            "reason": "Found 0/30 approved changesets -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
          },
          {
            "name": "Contributors",
            "score": 3,
            "reason": "project has 1 contributing companies or organizations -- score normalized to 3",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
          },
          {
            "name": "Dangerous-Workflow",
            "score": 10,
            "reason": "no dangerous workflow patterns detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
          },
          {
            "name": "Dependency-Update-Tool",
            "score": 0,
            "reason": "no update tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
          },
          {
            "name": "Fuzzing",
            "score": 0,
            "reason": "project is not fuzzed",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
          },
          {
            "name": "License",
            "score": 9,
            "reason": "license file detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
          },
          {
            "name": "Maintained",
            "score": 10,
            "reason": "30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
          },
          {
            "name": "Packaging",
            "score": 10,
            "reason": "packaging workflow detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
          },
          {
            "name": "Pinned-Dependencies",
            "score": 0,
            "reason": "dependency not pinned by hash detected -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
          },
          {
            "name": "SAST",
            "score": 0,
            "reason": "SAST tool is not run on all commits -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
          },
          {
            "name": "Security-Policy",
            "score": 0,
            "reason": "security policy file not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
          },
          {
            "name": "Signed-Releases",
            "score": 0,
            "reason": "Project has not signed or included provenance with any releases.",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
          },
          {
            "name": "Token-Permissions",
            "score": 0,
            "reason": "detected GitHub workflow tokens with excessive permissions",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
          },
          {
            "name": "Vulnerabilities",
            "score": 0,
            "reason": "149 existing vulnerabilities detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
          }
        ],
        "commit": "22ee3fea7c112aeab47f9345cc92336a40de3a5b",
        "ran_at": "2026-07-15T13:15:58Z",
        "aggregate_score": 3.4,
        "scorecard_version": "v5.5.0"
      },
      "has_codeql_workflow": false,
      "has_security_policy": false,
      "has_dependabot_config": false
    }
  },
  "config": {
    "disabled_metrics": [],
    "disabled_categories": [],
    "disabled_components": {}
  },
  "source": {
    "url": "https://github.com/the-omics-os/lobster",
    "host": "github.com",
    "name": "lobster",
    "owner": "the-omics-os"
  },
  "metrics": {
    "overall": {
      "key": "overall",
      "band": "moderate",
      "name": "Overall health",
      "note": null,
      "notes": [],
      "value": 60,
      "inputs": {
        "security": 34,
        "vitality": 80,
        "community": 48,
        "governance": 52,
        "engineering": 81
      },
      "components": []
    },
    "categories": [
      {
        "key": "vitality",
        "band": "good",
        "name": "Vitality",
        "value": 80,
        "weight": 0.22,
        "metrics": [
          {
            "key": "development_activity",
            "band": "good",
            "name": "Development activity",
            "note": null,
            "notes": [],
            "value": 73,
            "inputs": {
              "commits_last_year": 814,
              "human_commit_share": null,
              "days_since_last_push": 5,
              "active_weeks_last_year": 13
            },
            "components": [
              {
                "key": "push_recency",
                "name": "Push recency",
                "detail": "last push 5 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "push_recency",
                    "params": {
                      "days": 5
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_cadence",
                "name": "Commit cadence",
                "detail": "13/52 weeks with commits",
                "points": 9,
                "status": "partial",
                "details": [
                  {
                    "code": "commit_cadence_weeks",
                    "params": {
                      "weeks": 13
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_volume",
                "name": "Commit volume",
                "detail": "814 commits in the last year",
                "points": 18,
                "status": "met",
                "details": [
                  {
                    "code": "commits_last_year",
                    "params": {
                      "count": 814
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "openssf_scorecard_maintained",
                "name": "OpenSSF Scorecard: Maintained",
                "detail": "30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "release_discipline",
            "band": "excellent",
            "name": "Release discipline",
            "note": null,
            "notes": [],
            "value": 90,
            "inputs": {
              "releases_count": 56,
              "latest_release_tag": "v1.1.419",
              "releases_from_tags": false,
              "days_since_latest_release": 12,
              "mean_days_between_releases": 7.6
            },
            "components": [
              {
                "key": "ships_releases",
                "name": "Ships releases",
                "detail": "56 releases published",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "releases_published",
                    "params": {
                      "count": 56
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "release_recency",
                "name": "Release recency",
                "detail": "latest release 12 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "release_recency",
                    "params": {
                      "days": 12
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "release_cadence",
                "name": "Release cadence",
                "detail": "a release every ~7.6 days",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "release_cadence",
                    "params": {
                      "gap": 7.6
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "openssf_scorecard_signed_releases",
                "name": "OpenSSF Scorecard: Signed-Releases",
                "detail": "Project has not signed or included provenance with any releases.",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "abandonment",
            "band": "excellent",
            "name": "Abandonment",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "cap": null,
              "state": "unverified",
              "guards": [],
              "signals": [],
              "red_flag": false,
              "multiplier_pct": 100,
              "declared_reason": null,
              "unverified_reason": "no_commit_sample",
              "unanswered_open_prs": null,
              "unanswered_open_issues": null,
              "days_since_last_merged_pr": null,
              "days_since_last_human_commit": null,
              "days_since_last_human_commit_is_floor": false
            },
            "components": [
              {
                "key": "project_is_still_maintained",
                "name": "Project is still maintained",
                "detail": "maintenance record not established from the collected data",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "abandonment_unverified",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Is the project alive — is code being written and are releases shipping?"
      },
      {
        "key": "community",
        "band": "at_risk",
        "name": "Community & Adoption",
        "value": 48,
        "weight": 0.18,
        "metrics": [
          {
            "key": "popularity",
            "band": "at_risk",
            "name": "Popularity & adoption",
            "note": null,
            "notes": [],
            "value": 34,
            "inputs": {
              "forks": 9,
              "stars": 42,
              "watchers": 0,
              "growth_state": "unverified",
              "growth_factor_pct": 100,
              "growth_unverified_reason": "no_history"
            },
            "components": [
              {
                "key": "stars",
                "name": "Stars",
                "detail": "42 stars",
                "points": 26.2,
                "status": "partial",
                "details": [
                  {
                    "code": "stars",
                    "params": {
                      "count": 42
                    }
                  }
                ],
                "max_points": 60
              },
              {
                "key": "forks",
                "name": "Forks",
                "detail": "9 forks",
                "points": 7.5,
                "status": "partial",
                "details": [
                  {
                    "code": "forks",
                    "params": {
                      "count": 9
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "watchers",
                "name": "Watchers",
                "detail": "0 watchers",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "watchers",
                    "params": {
                      "count": 0
                    }
                  }
                ],
                "max_points": 15
              }
            ]
          },
          {
            "key": "community_health",
            "band": "moderate",
            "name": "Community health",
            "note": null,
            "notes": [],
            "value": 64,
            "inputs": {
              "has_readme": true,
              "has_license": true,
              "has_contributing": true,
              "has_issue_template": false,
              "has_code_of_conduct": false,
              "has_pull_request_template": false
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 22.5,
                "status": "met",
                "details": [],
                "max_points": 22.5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file present, not a recognized license",
                "points": 16.9,
                "status": "partial",
                "details": [
                  {
                    "code": "license_custom",
                    "params": {}
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributing_guide",
                "name": "CONTRIBUTING guide",
                "detail": null,
                "points": 18,
                "status": "met",
                "details": [],
                "max_points": 18
              },
              {
                "key": "code_of_conduct",
                "name": "Code of conduct",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 13.5
              },
              {
                "key": "issue_template",
                "name": "Issue template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.2
              },
              {
                "key": "pr_template",
                "name": "PR template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.3
              }
            ]
          }
        ],
        "description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
      },
      {
        "key": "governance",
        "band": "moderate",
        "name": "Sustainability & Governance",
        "value": 52,
        "weight": 0.24,
        "metrics": [
          {
            "key": "maintainer_resilience",
            "band": "critical",
            "name": "Maintainer resilience (bus factor)",
            "note": null,
            "notes": [],
            "value": 15,
            "inputs": {
              "bus_factor": 1,
              "contributors_sampled": 2,
              "top_contributor_share": 0.998
            },
            "components": [
              {
                "key": "bus_factor",
                "name": "Bus factor",
                "detail": "1 contributor(s) cover half of all commits",
                "points": 9,
                "status": "partial",
                "details": [
                  {
                    "code": "bus_factor",
                    "params": {
                      "count": 1
                    }
                  }
                ],
                "max_points": 54
              },
              {
                "key": "commit_distribution",
                "name": "Commit distribution",
                "detail": "top contributor authored 100% of commits",
                "points": 0,
                "status": "partial",
                "details": [
                  {
                    "code": "top_contributor_share",
                    "params": {
                      "share": 100
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributor_breadth",
                "name": "Contributor breadth",
                "detail": "2 contributors",
                "points": 2.7,
                "status": "partial",
                "details": [
                  {
                    "code": "contributors_sampled",
                    "params": {
                      "count": 2
                    }
                  }
                ],
                "max_points": 13.5
              },
              {
                "key": "openssf_scorecard_contributors",
                "name": "OpenSSF Scorecard: Contributors",
                "detail": "project has 1 contributing companies or organizations -- score normalized to 3",
                "points": 3,
                "status": "partial",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "responsiveness",
            "band": "moderate",
            "name": "Issue & PR responsiveness",
            "note": null,
            "notes": [],
            "value": 63,
            "inputs": {
              "merged_prs": 6,
              "open_issues": 1,
              "closed_issues": 6,
              "issue_closed_ratio": 0.857,
              "closed_unmerged_prs": 4
            },
            "components": [
              {
                "key": "issue_resolution",
                "name": "Issue resolution",
                "detail": "86% of issues closed",
                "points": 40.1,
                "status": "partial",
                "details": [
                  {
                    "code": "issues_closed_share",
                    "params": {
                      "share": 86
                    }
                  }
                ],
                "max_points": 46.75
              },
              {
                "key": "pr_acceptance",
                "name": "PR acceptance",
                "detail": "6/10 decided PRs merged",
                "points": 22.9,
                "status": "partial",
                "details": [
                  {
                    "code": "decided_prs_merged",
                    "params": {
                      "merged": 6,
                      "decided": 10
                    }
                  }
                ],
                "max_points": 38.25
              },
              {
                "key": "openssf_scorecard_code_review",
                "name": "OpenSSF Scorecard: Code-Review",
                "detail": "Found 0/30 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              }
            ]
          },
          {
            "key": "stewardship",
            "band": "at_risk",
            "name": "Ownership & stewardship",
            "note": null,
            "notes": [],
            "value": 48,
            "inputs": {
              "followers": 14,
              "owner_type": "Organization",
              "is_verified": null,
              "owner_login": "the-omics-os",
              "public_repos": 9,
              "account_age_days": 336
            },
            "components": [
              {
                "key": "ownership_backing",
                "name": "Ownership backing",
                "detail": "organization-owned",
                "points": 30,
                "status": "met",
                "details": [
                  {
                    "code": "owner_organization",
                    "params": {}
                  }
                ],
                "max_points": 30
              },
              {
                "key": "verified_domain",
                "name": "Verified domain",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "owner_reach",
                "name": "Owner reach",
                "detail": "14 followers of the-omics-os",
                "points": 8.5,
                "status": "partial",
                "details": [
                  {
                    "code": "owner_followers",
                    "params": {
                      "count": 14,
                      "login": "the-omics-os"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "track_record",
                "name": "Track record",
                "detail": "9 public repos, account ~0 yr old",
                "points": 9.1,
                "status": "partial",
                "details": [
                  {
                    "code": "public_repos",
                    "params": {
                      "count": 9
                    }
                  },
                  {
                    "code": "account_age_years",
                    "params": {
                      "years": 0
                    }
                  }
                ],
                "max_points": 25
              }
            ]
          },
          {
            "key": "package_maintenance",
            "band": "excellent",
            "name": "Package maintenance",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "packages": [
                "lobster-ai"
              ],
              "ecosystems": "pypi",
              "any_deprecated": false,
              "min_days_since_publish": 12
            },
            "components": [
              {
                "key": "published_resolvable",
                "name": "Published & resolvable",
                "detail": "1 package(s) on pypi",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "packages_published",
                    "params": {
                      "count": 1,
                      "ecosystems": "pypi"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "publish_recency",
                "name": "Publish recency",
                "detail": "latest publish 12 days ago",
                "points": 35,
                "status": "met",
                "details": [
                  {
                    "code": "publish_recency",
                    "params": {
                      "days": 12
                    }
                  }
                ],
                "max_points": 35
              },
              {
                "key": "version_history",
                "name": "Version history",
                "detail": "58 published versions",
                "points": 20,
                "status": "met",
                "details": [
                  {
                    "code": "published_versions",
                    "params": {
                      "count": 58
                    }
                  }
                ],
                "max_points": 20
              },
              {
                "key": "not_deprecated",
                "name": "Not deprecated",
                "detail": "active, not deprecated or yanked",
                "points": 20,
                "status": "met",
                "details": [
                  {
                    "code": "package_not_deprecated",
                    "params": {}
                  }
                ],
                "max_points": 20
              }
            ]
          }
        ],
        "description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
      },
      {
        "key": "engineering",
        "band": "good",
        "name": "Engineering Quality",
        "value": 81,
        "weight": 0.2,
        "metrics": [
          {
            "key": "engineering_practices",
            "band": "moderate",
            "name": "Engineering practices",
            "note": null,
            "notes": [],
            "value": 68,
            "inputs": {
              "has_ci": true,
              "has_tests": true,
              "has_editorconfig": false,
              "has_linter_config": false,
              "has_precommit_config": false
            },
            "components": [
              {
                "key": "ci_workflows",
                "name": "CI workflows",
                "detail": "6 workflow(s)",
                "points": 24,
                "status": "met",
                "details": [
                  {
                    "code": "ci_workflows",
                    "params": {
                      "count": 6
                    }
                  }
                ],
                "max_points": 24
              },
              {
                "key": "tests_present",
                "name": "Tests present",
                "detail": null,
                "points": 24,
                "status": "met",
                "details": [],
                "max_points": 24
              },
              {
                "key": "linter_config",
                "name": "Linter config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 16
              },
              {
                "key": "pre_commit_hooks",
                "name": "Pre-commit hooks",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 9.6
              },
              {
                "key": "editorconfig",
                "name": ".editorconfig",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.4
              },
              {
                "key": "openssf_scorecard_ci_tests",
                "name": "OpenSSF Scorecard: CI-Tests",
                "detail": "2 out of 2 merged PRs checked by a CI test -- score normalized to 10",
                "points": 20,
                "status": "met",
                "details": [],
                "max_points": 20
              }
            ]
          },
          {
            "key": "documentation",
            "band": "excellent",
            "name": "Documentation",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "topics": [
                "agents",
                "bioinformatics",
                "langgraph",
                "transcriptomics",
                "lobster",
                "omics",
                "proteomics"
              ],
              "has_wiki": true,
              "homepage": "https://www.lobsterbio.com/",
              "has_readme": true,
              "has_docs_dir": true,
              "has_description": true
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 30,
                "status": "met",
                "details": [],
                "max_points": 30
              },
              {
                "key": "documentation_directory",
                "name": "Documentation directory",
                "detail": null,
                "points": 25,
                "status": "met",
                "details": [],
                "max_points": 25
              },
              {
                "key": "documentation_homepage_site",
                "name": "Documentation / homepage site",
                "detail": "https://www.lobsterbio.com/",
                "points": 15,
                "status": "met",
                "details": [],
                "max_points": 15
              },
              {
                "key": "repository_description",
                "name": "Repository description",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "topics",
                "name": "Topics",
                "detail": "7 topics",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "topics_count",
                    "params": {
                      "count": 7
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "wiki",
                "name": "Wiki",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
      },
      {
        "key": "security",
        "band": "at_risk",
        "name": "Security",
        "value": 34,
        "weight": 0.16,
        "metrics": [
          {
            "key": "security_posture",
            "band": "at_risk",
            "name": "Security posture",
            "note": null,
            "notes": [],
            "value": 34,
            "inputs": {
              "source": "openssf_scorecard",
              "checks_evaluated": 18,
              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 0,
              "scorecard_aggregate": 3.4
            },
            "components": [
              {
                "key": "binary_artifacts",
                "name": "Binary-Artifacts",
                "detail": "no binaries found in the repo",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "branch protection not enabled on development/release branches",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "ci_tests",
                "name": "CI-Tests",
                "detail": "2 out of 2 merged PRs checked by a CI test -- score normalized to 10",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "code_review",
                "name": "Code-Review",
                "detail": "Found 0/30 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 1 contributing companies or organizations -- score normalized to 3",
                "points": 0.8,
                "status": "partial",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no dangerous workflow patterns detected",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "no update tool detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.2,
                "status": "partial",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow detected",
                "points": 5,
                "status": "met",
                "details": [],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
                "detail": "SAST tool is not run on all commits -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "security_policy",
                "name": "Security-Policy",
                "detail": "security policy file not detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "signed_releases",
                "name": "Signed-Releases",
                "detail": "Project has not signed or included provenance with any releases.",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "detected GitHub workflow tokens with excessive permissions",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "149 existing vulnerabilities detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              }
            ]
          },
          {
            "key": "high_risk_jurisdiction_exposure",
            "band": "excellent",
            "name": "High-Risk Jurisdiction Exposure",
            "note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
            "notes": [
              {
                "code": "jurisdiction_evidence_limits",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "meaning": "self-published location evidence; not nationality or citizenship",
              "red_flag": false,
              "exposures": [],
              "policy_countries": [
                "Russia",
                "Iran",
                "North Korea"
              ],
              "review_only_matches": 0,
              "assessed_self_published_locations": 2
            },
            "components": [
              {
                "key": "policy_exposure_multiplier",
                "name": "Policy exposure multiplier",
                "detail": "no confirmed policy-scope location match",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "jurisdiction_no_match",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "at_risk",
        "name": "AI Readiness",
        "value": 49,
        "weight": 0,
        "metrics": [
          {
            "key": "ai_agent_context",
            "band": "critical",
            "name": "Agent context & guidance",
            "note": "Excluded from scoring (no data or not applicable): Legible commit history. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "legible_commit_history"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 1,
            "inputs": {
              "has_llms_txt": false,
              "legible_history_share": null,
              "agent_instruction_files": [],
              "agent_instruction_max_bytes": null
            },
            "components": [
              {
                "key": "agent_instructions",
                "name": "Agent instructions",
                "detail": "no CLAUDE.md / AGENTS.md / editor rules",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_instructions",
                    "params": {}
                  }
                ],
                "max_points": 45
              },
              {
                "key": "machine_readable_docs_llms_txt",
                "name": "Machine-readable docs (llms.txt)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "legible_commit_history",
                "name": "Legible commit history",
                "detail": "no data",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "ai_verify_loop",
            "band": "good",
            "name": "Verify loop (build / test / typecheck)",
            "note": "Excluded from scoring (no data or not applicable): Demonstrated agent practice, Automated maintenance. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "demonstrated_agent_practice",
                    "automated_maintenance"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 74,
            "inputs": {
              "has_nix": false,
              "has_tests": true,
              "lockfiles": [
                "go.sum",
                "uv.lock"
              ],
              "has_dockerfile": false,
              "typed_language": false,
              "bootstrap_files": [
                "Makefile"
              ],
              "has_devcontainer": false,
              "has_linter_config": false,
              "typecheck_configs": [
                "packages/lobster-genomics/lobster/agents/genomics/py.typed",
                "packages/lobster-metabolomics/lobster/agents/metabolomics/py.typed",
                "packages/lobster-metadata/lobster/agents/metadata_assistant/py.typed",
                "packages/lobster-ml/lobster/agents/machine_learning/py.typed",
                "packages/lobster-proteomics/lobster/agents/proteomics/py.typed",
                "packages/lobster-research/lobster/agents/data_expert/py.typed",
                "packages/lobster-research/lobster/agents/research/py.typed",
                "packages/lobster-structural-viz/lobster/agents/py.typed",
                "packages/lobster-transcriptomics/lobster/agents/transcriptomics/py.typed",
                "packages/lobster-visualization/lobster/agents/py.typed"
              ],
              "agent_commit_share": null,
              "toolchain_manifests": [],
              "dependency_bot_commit_share": null
            },
            "components": [
              {
                "key": "one_command_bootstrap",
                "name": "One-command bootstrap",
                "detail": "Makefile",
                "points": 18,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "Makefile"
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "automated_tests",
                "name": "Automated tests",
                "detail": null,
                "points": 22,
                "status": "met",
                "details": [],
                "max_points": 22
              },
              {
                "key": "lint_format_config",
                "name": "Lint / format config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
              },
              {
                "key": "static_type_checking",
                "name": "Static type checking",
                "detail": "packages/lobster-genomics/lobster/agents/genomics/py.typed, packages/lobster-metabolomics/lobster/agents/metabolomics/py.typed, packages/lobster-metadata/lobster/agents/metadata_assistant/py.typed, packages/lobster-ml/lobster/agents/machine_learning/py.typed, packages/lobster-proteomics/lobster/agents/proteomics/py.typed, packages/lobster-research/lobster/agents/data_expert/py.typed, packages/lobster-research/lobster/agents/research/py.typed, packages/lobster-structural-viz/lobster/agents/py.typed, packages/lobster-transcriptomics/lobster/agents/transcriptomics/py.typed, packages/lobster-visualization/lobster/agents/py.typed",
                "points": 11,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "packages/lobster-genomics/lobster/agents/genomics/py.typed, packages/lobster-metabolomics/lobster/agents/metabolomics/py.typed, packages/lobster-metadata/lobster/agents/metadata_assistant/py.typed, packages/lobster-ml/lobster/agents/machine_learning/py.typed, packages/lobster-proteomics/lobster/agents/proteomics/py.typed, packages/lobster-research/lobster/agents/data_expert/py.typed, packages/lobster-research/lobster/agents/research/py.typed, packages/lobster-structural-viz/lobster/agents/py.typed, packages/lobster-transcriptomics/lobster/agents/transcriptomics/py.typed, packages/lobster-visualization/lobster/agents/py.typed"
                    }
                  }
                ],
                "max_points": 11
              },
              {
                "key": "reproducible_environment",
                "name": "Reproducible environment",
                "detail": "lockfile",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "lockfile"
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "demonstrated_agent_practice",
                "name": "Demonstrated agent practice",
                "detail": "no data",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 10
              },
              {
                "key": "automated_maintenance",
                "name": "Automated maintenance",
                "detail": "no data",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 8
              },
              {
                "key": "openssf_scorecard_pinned_dependencies",
                "name": "OpenSSF Scorecard: Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "ai_code_legibility",
            "band": "good",
            "name": "Code legibility for models",
            "note": null,
            "notes": [],
            "value": 80,
            "inputs": {
              "primary_language": "Python",
              "largest_source_bytes": 171948,
              "source_files_sampled": 1061,
              "oversized_source_files": 43
            },
            "components": [
              {
                "key": "type_checkable_code",
                "name": "Type-checkable code",
                "detail": "Python with type-check config (packages/lobster-genomics/lobster/agents/genomics/py.typed, packages/lobster-metabolomics/lobster/agents/metabolomics/py.typed, packages/lobster-metadata/lobster/agents/metadata_assistant/py.typed, packages/lobster-ml/lobster/agents/machine_learning/py.typed, packages/lobster-proteomics/lobster/agents/proteomics/py.typed, packages/lobster-research/lobster/agents/data_expert/py.typed, packages/lobster-research/lobster/agents/research/py.typed, packages/lobster-structural-viz/lobster/agents/py.typed, packages/lobster-transcriptomics/lobster/agents/transcriptomics/py.typed, packages/lobster-visualization/lobster/agents/py.typed)",
                "points": 27,
                "status": "partial",
                "details": [
                  {
                    "code": "typecheck_config_language",
                    "params": {
                      "files": "packages/lobster-genomics/lobster/agents/genomics/py.typed, packages/lobster-metabolomics/lobster/agents/metabolomics/py.typed, packages/lobster-metadata/lobster/agents/metadata_assistant/py.typed, packages/lobster-ml/lobster/agents/machine_learning/py.typed, packages/lobster-proteomics/lobster/agents/proteomics/py.typed, packages/lobster-research/lobster/agents/data_expert/py.typed, packages/lobster-research/lobster/agents/research/py.typed, packages/lobster-structural-viz/lobster/agents/py.typed, packages/lobster-transcriptomics/lobster/agents/transcriptomics/py.typed, packages/lobster-visualization/lobster/agents/py.typed",
                      "language": "Python"
                    }
                  }
                ],
                "max_points": 45
              },
              {
                "key": "manageable_file_sizes",
                "name": "Manageable file sizes",
                "detail": "43/1061 source files over 60KB",
                "points": 52.8,
                "status": "partial",
                "details": [
                  {
                    "code": "oversized_source_files",
                    "params": {
                      "kb": 60,
                      "sampled": 1061,
                      "oversized": 43
                    }
                  }
                ],
                "max_points": 55
              }
            ]
          }
        ],
        "description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
      }
    ],
    "metrics_version": "1.13.0"
  },
  "warnings": [
    "Could not fetch go package 'github.com/the-omics-os/lobster-tui' from its registry"
  ],
  "report_type": "repository",
  "generated_at": "2026-07-15T13:16:10.225765Z",
  "schema_version": "0.11.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/t/the-omics-os/lobster.svg",
  "full_name": "the-omics-os/lobster",
  "license_state": "custom",
  "license_spdx": null
}

Bewertungen sind Signale, keine Garantien. Sie spiegeln öffentlich sichtbare Praxis auf GitHub wider — kein Code-Audit und keine Sicherheitsgarantie.

Fehlende Daten werden ausgeschlossen und die Gewichte neu normiert, nie als null bewertet. Die Methodik ist versioniert und offen: Metriken v1.13.0, Schema v0.11.0 — vollständige Methodik · Metriken-Wiki.

Wie ein einzelnes Ergebnis im Gesamtregister steht: aggregierte StatistikenPyPI.