#bioinformatics

This application is designed to create mmcif files from facilities data.

A high-performance, pure Rust toolkit for standardizing and preparing biomolecular systems (proteins & nucleic acids). It heals missing atoms, resolves protonation states, adds solvation, and unifies topologies to forge simulation-ready structures.

Python library and a CLI tool to analyze protein sample files

FlamingoDB is an open source scientific database engine built to empower researchers, scientists, and developers with efficient tools for managing, querying, and analyzing complex scientific datasets.

React component for visualizing protein structures with the Mol* framework.

Protein folding in Pymol

Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools.

Super lightweight and fast mmCIF/PDB/MOL2 file parser into Pandas DataFrames and backwards writer.

Опис репозиторію не опубліковано.

FastMCP-based protein data access tools for bioinformatics research

A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"

Cython implementation of PDB -> DataFrame parsing

A high-performance, pure Rust library for full-atom protein side-chain packing using the DREIDING force field, Goldstein+Split DEE, and tree-decomposition DP—with native protein–ligand and protein–nucleic acid interface support.

Опис репозиторію не опубліковано.

Protein structure comparison tools such as SSAP and SNAP

Data structures, algorithms, and parsing for crystallography

Svelte 5 molecular biology component library.

Lineage and clade classifier for influenza sequences

Biobb_md is the Biobb module collection to perform molecular dynamics simulations.

AI-assisted troubleshooting for AWS HealthOmics genomic workflows with custom knowledge base support

Опис репозиторію не опубліковано.

Toolkit for downstream processing of CiFi long reads.

JavaScript library for Multiple Sequence Alignment

A dependency-free cross-platform swiss army knife for PDB files.

Tool to interconvert between various bioinformatics formats that BioPython supports

Опис репозиторію не опубліковано.

Parses biom files