原始 JSON 报告 机器可读
{
"data": {
"repo": {
"topics": [
"genomics",
"bioinformatics",
"structural-variation",
"variant-calling",
"paired-end",
"long-read",
"structural",
"variant"
],
"is_fork": false,
"size_kb": 49019,
"has_wiki": true,
"homepage": null,
"languages": {
"C++": 110773,
"Cython": 443302,
"Python": 227588
},
"pushed_at": "2026-07-14T09:14:13Z",
"created_at": "2019-10-30T10:44:31Z",
"owner_type": "User",
"updated_at": "2026-06-15T13:48:23Z",
"description": "Toolkit for calling structural variants using short or long reads",
"is_archived": false,
"is_disabled": false,
"license_spdx": "MIT",
"default_branch": "master",
"license_spdx_raw": "MIT",
"primary_language": "Cython",
"significant_languages": [
"Cython",
"Python",
"C++"
]
},
"owner": {
"blog": null,
"name": "Kez Cleal",
"type": "User",
"login": "kcleal",
"company": "Cardiff University",
"location": "Cardiff",
"followers": 76,
"avatar_url": "https://avatars.githubusercontent.com/u/42997789?v=4",
"created_at": "2018-09-05T09:14:57Z",
"is_verified": null,
"public_repos": 29,
"account_age_days": 2878
},
"license": {
"state": "standard",
"spdx_id": "MIT",
"raw_spdx": "MIT",
"file_present": true,
"scorecard_found": true,
"profile_has_license": true
},
"activity": {
"releases": [
{
"tag": "v1.9.0",
"kind": "minor",
"published_at": "2026-07-14T09:14:13Z"
},
{
"tag": "v1.8.9",
"kind": "patch",
"published_at": "2026-04-24T16:50:26Z"
},
{
"tag": "v1.8.8",
"kind": "patch",
"published_at": "2026-02-11T13:08:43Z"
},
{
"tag": "v1.8.7",
"kind": "patch",
"published_at": "2025-09-25T09:21:21Z"
},
{
"tag": "v1.8.6",
"kind": "patch",
"published_at": "2025-08-06T12:28:44Z"
},
{
"tag": "v1.8.5",
"kind": "patch",
"published_at": "2025-05-19T14:33:14Z"
},
{
"tag": "v1.8.4",
"kind": "patch",
"published_at": "2025-05-16T08:49:21Z"
},
{
"tag": "v1.8.3",
"kind": "patch",
"published_at": "2025-05-09T13:00:17Z"
},
{
"tag": "v1.8.2",
"kind": "patch",
"published_at": "2025-04-07T12:37:26Z"
},
{
"tag": "v1.8.1",
"kind": "patch",
"published_at": "2025-03-17T12:34:27Z"
},
{
"tag": "v1.8.0",
"kind": "minor",
"published_at": "2025-02-26T11:17:10Z"
},
{
"tag": "v1.7.0",
"kind": "minor",
"published_at": "2024-11-22T11:47:59Z"
},
{
"tag": "v1.6.7",
"kind": "patch",
"published_at": "2024-09-12T12:38:24Z"
},
{
"tag": "v1.6.6",
"kind": "patch",
"published_at": "2024-07-14T21:19:43Z"
},
{
"tag": "v1.6.5",
"kind": "patch",
"published_at": "2024-07-05T08:17:49Z"
},
{
"tag": "v1.6.3",
"kind": "patch",
"published_at": "2024-03-26T22:53:50Z"
},
{
"tag": "v1.6.2",
"kind": "patch",
"published_at": "2023-10-18T11:42:46Z"
},
{
"tag": "v1.6.1",
"kind": "patch",
"published_at": "2023-09-22T14:50:15Z"
},
{
"tag": "v1.6.0",
"kind": "minor",
"published_at": "2023-08-17T13:16:02Z"
},
{
"tag": "v1.5.0",
"kind": "minor",
"published_at": "2023-07-21T08:44:08Z"
},
{
"tag": "v1.4.2",
"kind": "patch",
"published_at": "2023-07-11T07:54:39Z"
},
{
"tag": "v1.4.0",
"kind": "minor",
"published_at": "2023-06-21T15:08:57Z"
},
{
"tag": "v1.3.16",
"kind": "patch",
"published_at": "2023-03-04T23:51:01Z"
},
{
"tag": "v1.3.14",
"kind": "patch",
"published_at": "2023-02-23T11:52:48Z"
},
{
"tag": "v1.3.12",
"kind": "patch",
"published_at": "2022-08-03T08:53:27Z"
},
{
"tag": "v1.3.10",
"kind": "patch",
"published_at": "2022-04-18T18:18:05Z"
},
{
"tag": "v1.3.7",
"kind": "patch",
"published_at": "2022-03-21T10:17:53Z"
},
{
"tag": "v1.3.5",
"kind": "patch",
"published_at": "2022-02-06T22:11:31Z"
},
{
"tag": "v1.3.4",
"kind": "patch",
"published_at": "2021-12-17T13:35:07Z"
}
],
"recent_commits": [
{
"oid": "91432afb7d1c863b96720d4c7f2f067a14fd2105",
"body": "Several small efficiency improvements\nRNAseq pipeline now available",
"is_bot": false,
"headline": "Several small bug fixes",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-06-15T13:48:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "08be792148eb41e893b7c2f5c212fb8e71b8ce91",
"body": null,
"is_bot": false,
"headline": "#158 scaling issues with merge",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-06-12T12:57:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "49ad136621fe9ba6a2a92e72e831b5d29380dadb",
"body": null,
"is_bot": false,
"headline": "#158 scaling issues with merge",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-06-08T15:38:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c94859bae9e849b01fbdef3caa4c0fc1aa9e6bf1",
"body": null,
"is_bot": false,
"headline": "Better scaling for cohort merging",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-05-18T10:42:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8ea99430860c3b27af153eecd8796b03685655c5",
"body": null,
"is_bot": false,
"headline": "Update main.yml",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2026-04-28T09:13:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c7e4c93f8e75935407cb762e56937bf1efdfa68d",
"body": null,
"is_bot": false,
"headline": "xz for python3.14",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-04-27T21:09:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4d5a7dc5e993cd755d91d454b849909f0bb4cf41",
"body": null,
"is_bot": false,
"headline": "xz for python3.14",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-04-27T20:56:33Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6f5cec15681f4a47d60d0e066a0e4654eeeaad64",
"body": null,
"is_bot": false,
"headline": "Merge remote-tracking branch 'origin/master'",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-04-27T20:39:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d76f274a938dbd6d4f16534e9e8418eb5b370e50",
"body": null,
"is_bot": false,
"headline": "COmpile errors for python3.14. Fixed warning #158",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-04-27T20:26:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d535837b604b72d97229cea523b12e34c4822d6e",
"body": null,
"is_bot": false,
"headline": "Update main.yml",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2026-04-27T16:28:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "079d5fd7eaa2cf47bc32d88ab83d99d94a76c7f6",
"body": null,
"is_bot": false,
"headline": "Version bump",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-04-24T09:44:38Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c80ee0efe1d3ea0b35aa96472e9db90c8dd6c404",
"body": null,
"is_bot": false,
"headline": "<python 3.15",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-04-24T07:54:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "918fc748e4a6dbc3ae373e6cc917c5bfd3c8f7c7",
"body": null,
"is_bot": false,
"headline": "cibuildwheel bump",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-04-23T20:58:29Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "149dcce4c9c8f6b08dc2914a8c6caa68163d717e",
"body": null,
"is_bot": false,
"headline": "Fix for #158",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-04-23T10:17:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "859a7cb944f2efe724f8d343eee2e42ba0326c68",
"body": null,
"is_bot": false,
"headline": "Update main.yml",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2026-03-07T11:51:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fb6559b238cc923de9fe33711d845cf9f8da621a",
"body": null,
"is_bot": false,
"headline": "Update main.yml",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2026-03-07T09:46:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ca378170681f15c0831c60f32907205a1f06a63e",
"body": null,
"is_bot": false,
"headline": "Update main.yml",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2026-03-07T09:42:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5eeb3566997d69fd35bd9c4bda703a68ecac1ead",
"body": null,
"is_bot": false,
"headline": "Update main.yml",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2026-03-07T09:38:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "af97f09d8901a9ef16f0e1990ac54e7271a20939",
"body": null,
"is_bot": false,
"headline": "Merge remote-tracking branch 'origin/master'",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-02-11T10:24:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "07f6a44af3ddd43aefc7cd8f35e160692d4483b7",
"body": null,
"is_bot": false,
"headline": "Fixed bug in re-mapping. Better AF for RNAseq",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-02-11T10:23:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e4038f1986d8699c061bf9b2cc9f862028a44a0a",
"body": null,
"is_bot": false,
"headline": "Fixed bug in re-mapping. Better AF for RNAseq",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-02-11T10:17:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b5e523c63e6c90350b0240163710836501fd7203",
"body": null,
"is_bot": false,
"headline": "Fixed bug in re-mapping. Better AF for RNAseq",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-02-11T10:16:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "79adafe9bf7b8ff88a7089946337de46646ca518",
"body": null,
"is_bot": false,
"headline": "Fixed bug in re-mapping. Better AF for RNAseq",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-02-11T09:22:23Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b55f47d36da2d4bf93f07228f47c948e90de7749",
"body": "Signed-off-by: Aroon Chande <aroon.chande@color.com>",
"is_bot": false,
"headline": "Update numpy/pandas usage for pandas 3.x and numpy >=2.4 (#155)",
"author_name": "Aroon Chande",
"author_login": "aroon-color",
"committed_at": "2026-01-28T20:56:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "285f234efacc4a50e53c76815b6807711f6b2148",
"body": null,
"is_bot": false,
"headline": "Better sensitivity for SR",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-01-15T12:42:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b7aa77c682b672ff0e90888ba918f60d4923bfce",
"body": null,
"is_bot": false,
"headline": "Better sensitivity for LR",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-01-14T10:33:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "672b6ac763f8dbf858cf69dafffeeeb1500742e5",
"body": "… Improved TRA calling. Added AF to filter command.",
"is_bot": false,
"headline": "More work on transcript data. Several bug fixes. Improved clustering.…",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2026-01-07T16:11:47Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c5918b0f3e38ac7a32adc6fd3b1d185bb09e2fc8",
"body": "Co-authored-by: Ashley Pridgeon <ashley.pridgeon@wales.nhs.uk>",
"is_bot": false,
"headline": "fixing 5to5 BND conversion (#153)",
"author_name": "Ashley Pridgeon",
"author_login": "APridgeon",
"committed_at": "2025-12-11T13:16:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "48c475d86e3277567b016d38aa72e98b3af327e7",
"body": null,
"is_bot": false,
"headline": "#151 fixed TypeError. More work on trascript data",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-09-11T09:07:42Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "be844eba7ba01c3d065dee6630a3b6d749147f63",
"body": null,
"is_bot": false,
"headline": "Superinterval 0.3 fix",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-08-06T11:57:32Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "956222e6edd935ed506f30794a4d8e3b006f8bde",
"body": null,
"is_bot": false,
"headline": "Fixes for issues #147 fixed overwrite of svlen_precise",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-07-30T10:57:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4c61b78a817b627a444d8168424d4ce283a4ef04",
"body": null,
"is_bot": false,
"headline": "Fixes for issues #147",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-07-25T15:54:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "69147b1e6950e0b9c0d3d17294b3fca8402f7567",
"body": null,
"is_bot": false,
"headline": "Fixes for issues #148 #147",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-07-24T11:27:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ebf9f0f7e0ab83234cb16f8729fccc2704d4d721",
"body": null,
"is_bot": false,
"headline": "Updated docker # [skip ci]",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-06-17T08:53:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e510be6674d9bdbc650221416b992bb842aef83e",
"body": null,
"is_bot": false,
"headline": "Merge remote-tracking branch 'origin/master'",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-06-17T08:52:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "07d7d7282a218ed06150eb1a7161c1eb4aa73d73",
"body": null,
"is_bot": false,
"headline": "Updated docker # [skip ci]",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-06-17T08:52:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "49c4f7f52c086eedaa68c825799d7297839b64d5",
"body": null,
"is_bot": false,
"headline": "Code refactoring - better GIL handling",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-06-04T12:04:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d3eaa7ec9bb1e877c7d27e8fed3aa6febefb3691",
"body": null,
"is_bot": false,
"headline": "Added QUAL to docs # [skip ci]",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-05-19T14:40:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cf9f0dac775c27b5e7cc8a2e691ab58ed983adad",
"body": "…xed typo in CLI help menu. Symbolic-SV size now respected for paired-end reads. Code refactoring.",
"is_bot": false,
"headline": "Added QUAL value to output #140. Fixed malformed HP tag #136 #144. Fi…",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-05-19T13:59:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "162921ddbc5a3bdd87ef626308acbbcb64dbaf39",
"body": null,
"is_bot": false,
"headline": "Added FCC for large inversions",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-05-16T09:09:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "72ca7253874844b1078ee57c62dcdec82e37aee1",
"body": null,
"is_bot": false,
"headline": "Added FCC for large inversions",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-05-16T07:57:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8cbbfe60395dea75bf7e470ad28a323e623951e0",
"body": null,
"is_bot": false,
"headline": "Phasing added to readme",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-05-15T22:32:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ff902c8be8216e8c3de8625f60665370eacde857",
"body": null,
"is_bot": false,
"headline": "Phasing added to readme",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-05-15T22:20:37Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9288249486118721469e634b38cf57ead09d9731",
"body": null,
"is_bot": false,
"headline": "Phasing added to readme",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-05-15T22:17:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "276e242d00667a7184f90bb587cd2da6ed3ed329",
"body": null,
"is_bot": false,
"headline": "Phasing added to readme",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-05-15T22:15:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "54221dda4da9fe5ac729e8cd95c79913e7b50c0b",
"body": null,
"is_bot": false,
"headline": "Phasing added to readme",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-05-15T22:11:32Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e66ec78ecce1d384c4ec87cb4c454511f9a7a3dd",
"body": "* rnaseq <- master (#141)\n\n* Master <- Rnaseq (#128)\n\n* Fixed fetching ref genome bases\n\n* Fixed empty ref seq\n\n* Dysgu dev (#132)\n\n* Dysgu_dev <-- master (#121)\n\n* Dysgu dev (#115)\n\n* dysgu_dev <- master (#108)\r\n\r\n* correct usage of update_filter_value in filter_normals\r\n\r\nIt seems like at some poi\n[…]\nson workflow\n\n* Fix meson workflow\n\n* Fix meson workflow\n\n* Fix #136\n\n---------\n\nCo-authored-by: Dr. K. D. Murray <1560490+kdm9@users.noreply.github.com>\nCo-authored-by: Ondřej Sloup <dev@lupphes.com>",
"is_bot": false,
"headline": "Rnaseq (#143)",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2025-05-15T18:14:49Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "2f8ecf852fe29f03c72c576b982f49e4d71d9898",
"body": null,
"is_bot": false,
"headline": "Merge branch 'rnaseq' into master",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2025-05-09T13:08:35Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "45c4187737e99c402ea8206faf3f73a482e5c99a",
"body": null,
"is_bot": false,
"headline": "pysam 0.23",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-05-09T11:43:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3ed6cbbbcee12d8f2e91094ffec0e9b274ea9a1e",
"body": null,
"is_bot": false,
"headline": "pysam 0.23",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-05-09T11:13:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "019187cf5d0599b6cc388fd4a8935308450da829",
"body": null,
"is_bot": false,
"headline": "Fixes #136, merging v1.8 with lower versions",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-05-09T10:38:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d1908e934c6ec240197de89cf7a6d1bf4f2f56fb",
"body": null,
"is_bot": false,
"headline": "feat: Update Dockerfile to not be version dependant (#138)",
"author_name": "Ondřej Sloup",
"author_login": "Lupphes",
"committed_at": "2025-04-22T15:56:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c9c596ccace31a4b6c0772d78dd79a0714f15928",
"body": null,
"is_bot": false,
"headline": "Missing REF base issue",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-04-17T08:14:12Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2780c9a337bf3e81eb1fe2fc3ddf9b052a464287",
"body": null,
"is_bot": false,
"headline": "Twine issue",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-04-08T09:04:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bd1d64078d5642b216eb5350acfa3b607e128e48",
"body": null,
"is_bot": false,
"headline": "Twine issue",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-04-07T14:50:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a34dbb9043152925535b52613c706a8c55ed1cd7",
"body": null,
"is_bot": false,
"headline": "Twine issue",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-04-07T14:46:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d5d80fa2971347b8477e26f94f4774190050d50c",
"body": null,
"is_bot": false,
"headline": "Update htslib to 1.21 for linux build",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2025-04-07T13:09:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8780a6eee6ddc322c055cdd119e71de41a9b8cdb",
"body": null,
"is_bot": false,
"headline": "python3.13 wheel support",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2025-04-07T13:07:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "da15b856e707fd46acbc7913338c7d9fd9678688",
"body": null,
"is_bot": false,
"headline": "v1.8.2",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2025-04-07T12:33:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f8bceb2328f436d2fe15c8516c9e0e80ea9d618e",
"body": "* Dysgu_dev <-- master (#121)\n\n* Dysgu dev (#115)\n\n* dysgu_dev <- master (#108)\r\n\r\n* correct usage of update_filter_value in filter_normals\r\n\r\nIt seems like at some point the usage of update_filter_value changed, because in several spots, it is missing the sample_name argument. This breaks `dysgu fi\n[…]\nlic\n\n* fix: relax input BAM file validation (#131)\n\n* Zero based POS\n\n---------\n\nCo-authored-by: Dr. K. D. Murray <1560490+kdm9@users.noreply.github.com>\nCo-authored-by: Ondřej Sloup <dev@lupphes.com>",
"is_bot": false,
"headline": "Dysgu dev (#132)",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2025-04-07T12:32:07Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "8cc1e7d8f8b7728849d2bf7405ee1620ae358f0e",
"body": "* Fixed fetching ref genome bases\n\n* Fixed empty ref seq",
"is_bot": false,
"headline": "Master <- Rnaseq (#128)",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2025-03-14T10:51:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "99901602867b70e85133aa2ad83a75b84d011934",
"body": null,
"is_bot": false,
"headline": "Fixed empty ref seq",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-03-14T10:50:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2d23fdb2205e5b5a8ce28aa3e1805bf5b9c30b3a",
"body": null,
"is_bot": false,
"headline": "Fixed fetching ref genome bases",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-03-13T12:35:24Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f8a953f705d02393b6e5013bb1b4e66da5054e83",
"body": null,
"is_bot": false,
"headline": "Genotyping works with any chromosome name",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-03-07T15:24:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d8f9aa530cbbaa45dd1125f903dfd8d0186929b2",
"body": null,
"is_bot": false,
"headline": "Adjusted lower_bound_support for long reads",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-03-05T15:47:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e71a05cbbdc4615b489ed3ac356872cfd51d43f1",
"body": null,
"is_bot": false,
"headline": "Adjusted lower_bound_support for long reads",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-03-05T14:52:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a57ee114117c4f1c69940b23bdee1634e0747ae0",
"body": "* Dysgu_dev <-- master (#121)\n\n* Dysgu dev (#115)\n\n* dysgu_dev <- master (#108)\r\n\r\n* correct usage of update_filter_value in filter_normals\r\n\r\nIt seems like at some point the usage of update_filter_value changed, because in several spots, it is missing the sample_name argument. This breaks `dysgu fi\n[…]\n25 better calling of low support SVs\n\n* Updated requirements.txt\n\n* Fixed large record output, switched to symbolic\n\n---------\n\nCo-authored-by: Dr. K. D. Murray <1560490+kdm9@users.noreply.github.com>",
"is_bot": false,
"headline": "Dysgu dev (#127)",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2025-03-05T13:39:55Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "d3c95b49ef68ede406b513425b545fd99c1b6360",
"body": "* Dysgu_dev <-- master (#121)\n\n* Dysgu dev (#115)\n\n* dysgu_dev <- master (#108)\r\n\r\n* correct usage of update_filter_value in filter_normals\r\n\r\nIt seems like at some point the usage of update_filter_value changed, because in several spots, it is missing the sample_name argument. This breaks `dysgu fi\n[…]\n'0'\n\n* #125 better calling of low support SVs\n\n* #125 better calling of low support SVs\n\n* Updated requirements.txt\n\n---------\n\nCo-authored-by: Dr. K. D. Murray <1560490+kdm9@users.noreply.github.com>",
"is_bot": false,
"headline": "Dysgu dev (#126)",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2025-03-04T16:54:15Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "79152b77fe004826caeac4e72bd13e3dfff2b4b3",
"body": "* Dysgu_dev <-- master (#121)\n\n* Dysgu dev (#115)\n\n* dysgu_dev <- master (#108)\r\n\r\n* correct usage of update_filter_value in filter_normals\r\n\r\nIt seems like at some point the usage of update_filter_value changed, because in several spots, it is missing the sample_name argument. This breaks `dysgu fi\n[…]\nror\n\n* Changed empty PSET and HP to 0\n\n* PSET and HP default to empty string\n\n* PSET and HP default to '-1' and '0'\n\n---------\n\nCo-authored-by: Dr. K. D. Murray <1560490+kdm9@users.noreply.github.com>",
"is_bot": false,
"headline": "Master <- Dysgu dev (#124)",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2025-02-26T10:53:11Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "0eec8043dadc0ab7839e36c34aa3b30460f8f35d",
"body": "* Dysgu_dev <-- master (#121)\n\n* Dysgu dev (#115)\n\n* dysgu_dev <- master (#108)\r\n\r\n* correct usage of update_filter_value in filter_normals\r\n\r\nIt seems like at some point the usage of update_filter_value changed, because in several spots, it is missing the sample_name argument. This breaks `dysgu fi\n[…]\n-by: Dr. K. D. Murray <1560490+kdm9@users.noreply.github.com>\n\n* Fixed compile errors. Add logging for HP tag usage\n\n---------\n\nCo-authored-by: Dr. K. D. Murray <1560490+kdm9@users.noreply.github.com>",
"is_bot": false,
"headline": "Dysgu dev (#122)",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2025-01-31T11:34:21Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "eb208c81aba29c8c6e66aa290be0cd93f7ea7b49",
"body": null,
"is_bot": false,
"headline": "Merge branch 'dysgu_dev' into master",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2025-01-31T10:59:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "10fa7549a434f861f1ac3228a4a09953cb7b8bf9",
"body": null,
"is_bot": false,
"headline": "Fixed compiler warning",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-01-31T10:51:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2d4c4f75087a79463f36ebe9c2b857006c46a100",
"body": null,
"is_bot": false,
"headline": "Updated workflow",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-01-17T13:49:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "67ac3355fc37045d1050cc42ceb246beddd48038",
"body": null,
"is_bot": false,
"headline": "Merge remote-tracking branch 'origin/master'",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-01-17T13:47:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1ca383aeb2f0f60dd72f0a915a9ed2af5319858a",
"body": null,
"is_bot": false,
"headline": "Updated workflow",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-01-17T13:46:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e83026696ad00e62b67e4830a05df02e4c39d002",
"body": null,
"is_bot": false,
"headline": "Updated workflow",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-01-17T12:48:38Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4af8d0dcaedf1873f09b00e8d8a9f04a44d8fa62",
"body": "…arge cohorts. Use of HP tag to aid clustering and genotyping. Better SV merging",
"is_bot": false,
"headline": "Added progressive merge option using --merge-method progressive for l…",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2025-01-17T12:22:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8018d95384bd2c6b3d244d63998ae73f3905ccb4",
"body": "# Conflicts:\n#\tdysgu/graph.pyx",
"is_bot": false,
"headline": "Merge branch 'tweaks' into dysgu_dev",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2024-11-26T14:27:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "435065a7da3a760182d8608cc0d00e49485ef72f",
"body": "…or long-reads (run-pipeline) (#116)",
"is_bot": false,
"headline": "Fixed merge None type error. Added wb3 as default compression level f…",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2024-11-21T16:12:33Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9266790d5f9a296ef7b937e50a23b404e5737b7f",
"body": "…or long-reads (run-pipeline)",
"is_bot": false,
"headline": "Fixed merge None type error. Added wb3 as default compression level f…",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2024-11-21T12:53:32Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "636b5b60d25c8a5280cbd4ed6d5c7c6d5182c9a4",
"body": null,
"is_bot": false,
"headline": "Fixes compile error for clang",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2024-11-20T15:49:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cc6e617d58201ad5dbc1854aad99b325ca191a18",
"body": "# Conflicts:\n#\tdysgu/call_component.pyx",
"is_bot": false,
"headline": "Merge remote-tracking branch 'origin/master'",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2024-11-20T13:24:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9b73f0e9c1fb2813c8c10ba1534e40ad20750d75",
"body": "* dysgu_dev <- master (#108)\r\n\r\n* correct usage of update_filter_value in filter_normals\r\n\r\nIt seems like at some point the usage of update_filter_value changed, because in several spots, it is missing the sample_name argument. This breaks `dysgu filter --keep-all`.\r\n\r\n* Update main.yml\r\n\r\n* Update \n[…]\nml\r\n\r\n* Updated workflow\r\n\r\n* Updated workflow\r\n\r\n* Updated workflow\r\n\r\n* Update main.yml\r\n\r\n* Updated workflow\r\n\r\n---------\r\n\r\nCo-authored-by: Dr. K. D. Murray <1560490+kdm9@users.noreply.github.com>",
"is_bot": false,
"headline": "Dysgu dev (#115)",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2024-11-20T13:19:02Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "636883d4e1512e663876c12d16c5f7f5b583162c",
"body": null,
"is_bot": false,
"headline": "Merge branch 'master' into dysgu_dev",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2024-11-20T13:18:29Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2af3a89901ea1aa3e7da764fada122f6a4e02fbb",
"body": null,
"is_bot": false,
"headline": "Updated workflow",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2024-11-20T09:50:42Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "654245f015d8db3e77ceb680b19248c73c6e1f27",
"body": null,
"is_bot": false,
"headline": "Update main.yml",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2024-11-20T08:24:29Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c8008061f2c91b08b717ec5bc68bbab8a44b0fa2",
"body": null,
"is_bot": false,
"headline": "Updated workflow",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2024-11-19T11:08:38Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "dc82d075e28cf9ecbd6bd1134c843350cdce0319",
"body": null,
"is_bot": false,
"headline": "Updated workflow",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2024-11-19T10:52:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b475e360eef88703eaa5d65b31a1406d40d18531",
"body": null,
"is_bot": false,
"headline": "Updated workflow",
"author_name": "kcleal",
"author_login": "kcleal",
"committed_at": "2024-11-19T10:39:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6b6e781aa83b5bfc4b07f8fad3c36344b273580b",
"body": null,
"is_bot": false,
"headline": "Update main.yml",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2024-11-18T16:33:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cbd426a93b8a27a489f647fe13f0e6d4f0e15b1f",
"body": null,
"is_bot": false,
"headline": "Update osx-deps",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2024-11-18T15:36:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "46a061395d8dcfad4cd2e84173b046e5328a6158",
"body": null,
"is_bot": false,
"headline": "Update main.yml",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2024-11-18T15:26:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6c45165a5fe19645c22d231ec2683dc7349143eb",
"body": null,
"is_bot": false,
"headline": "Update osx-deps",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2024-11-18T13:06:12Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "835db2ca20a91591a4caa88837d74b1625158835",
"body": null,
"is_bot": false,
"headline": "Update osx-deps",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2024-11-18T12:55:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "297bd40a39fc626f79ba5223cceb391702d5290c",
"body": null,
"is_bot": false,
"headline": "Update osx-deps",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2024-11-18T10:32:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "53b5da64c8fbe032f5e2b1c5325e99de0c7cd176",
"body": null,
"is_bot": false,
"headline": "Update osx-deps",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2024-11-18T09:51:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4cd21d11dbbcc0d608798594a25c3a140605fc70",
"body": null,
"is_bot": false,
"headline": "Update main.yml",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2024-11-18T09:47:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9299731f8dde2994428f802dbb72698ac53de973",
"body": null,
"is_bot": false,
"headline": "Update main.yml",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2024-11-18T09:17:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c44b3c688499bc3ac4e4b8f00201be8f8cf05f98",
"body": null,
"is_bot": false,
"headline": "Update main.yml",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2024-11-16T12:36:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "15be213f697bcc126244f1618cf6441e29fff370",
"body": null,
"is_bot": false,
"headline": "Update main.yml macos11",
"author_name": "Kez Cleal",
"author_login": "kcleal",
"committed_at": "2024-11-16T12:24:12Z",
"body_truncated": false,
"is_coding_agent": false
}
],
"releases_count": 29,
"commits_last_year": 33,
"latest_release_at": "2026-07-14T09:14:13Z",
"latest_release_tag": "v1.9.0",
"releases_from_tags": false,
"days_since_last_push": 9,
"active_weeks_last_year": 14,
"days_since_latest_release": 9,
"mean_days_between_releases": 53.8
},
"community": {
"has_readme": true,
"has_license": true,
"has_description": true,
"has_contributing": false,
"health_percentage": 42,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"ecosystem": {
"packages": [
{
"name": "dysgu",
"exists": true,
"license": null,
"keywords": [],
"ecosystem": "pypi",
"matches_repo": true,
"registry_url": "https://pypi.org/project/dysgu/",
"is_deprecated": false,
"latest_version": "1.9.0",
"repository_url": "https://github.com/kcleal/dysgu",
"versions_count": 43,
"total_downloads": null,
"dependents_count": null,
"deprecation_note": null,
"maintainers_count": null,
"monthly_downloads": 1527,
"first_published_at": "2021-05-07T13:00:15.490986Z",
"latest_published_at": "2026-07-16T08:33:27.359288Z",
"latest_version_yanked": null,
"days_since_latest_publish": 7
}
]
},
"popularity": {
"forks": 14,
"stars": 115,
"watchers": 2,
"fork_history": {
"days": [
{
"date": "2021-07-07",
"count": 1
},
{
"date": "2021-07-13",
"count": 1
},
{
"date": "2022-03-19",
"count": 1
},
{
"date": "2022-08-13",
"count": 2
},
{
"date": "2022-08-31",
"count": 1
},
{
"date": "2022-09-28",
"count": 1
},
{
"date": "2023-09-29",
"count": 1
},
{
"date": "2023-10-17",
"count": 1
},
{
"date": "2024-07-13",
"count": 1
},
{
"date": "2024-08-22",
"count": 1
},
{
"date": "2024-10-10",
"count": 1
},
{
"date": "2025-04-05",
"count": 1
},
{
"date": "2025-12-11",
"count": 1
}
],
"complete": true,
"collected": 14,
"total_forks": 14
},
"star_history": null,
"open_issues_and_prs": 2
},
"ai_readiness": {
"has_nix": false,
"example_dirs": [
"notebooks"
],
"has_llms_txt": false,
"has_dockerfile": true,
"has_mcp_signal": false,
"bootstrap_files": [
"docs/Makefile"
],
"api_schema_files": [],
"has_devcontainer": false,
"typecheck_configs": [],
"toolchain_manifests": [],
"largest_source_bytes": 783002,
"source_files_sampled": 28,
"oversized_source_files": 3,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"dependencies": {
"manifests": [
"pyproject.toml"
],
"advisories": {
"error": "No resolved dependencies carried a version and a supported ecosystem",
"scope": "repository_graph",
"source": null,
"findings": [],
"collected": false,
"malicious": [],
"truncated": false,
"by_severity": {},
"advisory_count": 0,
"affected_count": 0,
"assessed_count": 0,
"malicious_count": 0,
"assessed_package": null,
"unassessed_count": 6,
"direct_affected_count": 0
},
"ecosystems": [
"pypi"
],
"dependencies": [
{
"name": "cython",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "click",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">= 8.0"
},
{
"name": "numpy",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "scipy",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "pandas",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "pysam",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">= 0.23.3"
},
{
"name": "networkx",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">= 2.4"
},
{
"name": "scikit-learn",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">= 0.22"
},
{
"name": "sortedcontainers",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "superintervals",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": ">= 0.3.0"
},
{
"name": "lightgbm",
"manifest": "pyproject.toml",
"ecosystem": "pypi",
"version_constraint": null
}
],
"all_dependencies": {
"error": null,
"source": "github-sbom",
"packages": [
{
"name": "click",
"direct": true,
"version": null,
"ecosystem": "pypi"
},
{
"name": "networkx",
"direct": true,
"version": null,
"ecosystem": "pypi"
},
{
"name": "pysam",
"direct": true,
"version": null,
"ecosystem": "pypi"
},
{
"name": "scikit-learn",
"direct": true,
"version": null,
"ecosystem": "pypi"
},
{
"name": "superintervals",
"direct": true,
"version": null,
"ecosystem": "pypi"
},
{
"name": "meson-python",
"direct": false,
"version": null,
"ecosystem": "pypi"
}
],
"collected": true,
"truncated": false,
"total_count": 6,
"direct_count": 5,
"indirect_count": 1
}
},
"maintainership": {
"issues": {
"open_prs": 0,
"merged_prs": 38,
"open_issues": 2,
"closed_ratio": 0.983,
"closed_issues": 116,
"closed_unmerged_prs": 4
},
"bus_factor": 1,
"bot_contributors": 0,
"top_contributors": [
{
"type": "User",
"login": "kcleal",
"commits": 614,
"avatar_url": "https://avatars.githubusercontent.com/u/42997789?v=4"
},
{
"type": "User",
"login": "kearseya",
"commits": 26,
"avatar_url": "https://avatars.githubusercontent.com/u/44373764?v=4"
},
{
"type": "User",
"login": "brentp",
"commits": 3,
"avatar_url": "https://avatars.githubusercontent.com/u/1739?v=4"
},
{
"type": "User",
"login": "aroon-color",
"commits": 2,
"avatar_url": "https://avatars.githubusercontent.com/u/104777855?v=4"
},
{
"type": "User",
"login": "JMencius",
"commits": 2,
"avatar_url": "https://avatars.githubusercontent.com/u/63288733?v=4"
},
{
"type": "User",
"login": "APridgeon",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/69325571?v=4"
},
{
"type": "User",
"login": "kdm9",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/1560490?v=4"
},
{
"type": "User",
"login": "Lupphes",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/36422511?v=4"
}
],
"contributors_sampled": 8,
"top_contributor_share": 0.945
},
"quality_signals": {
"has_ci": true,
"has_tests": true,
"ci_workflows": [
"main.yml"
],
"has_docs_dir": true,
"linter_configs": [],
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"security_signals": {
"lockfiles": [],
"scorecard": {
"checks": [
{
"name": "Binary-Artifacts",
"score": 10,
"reason": "no binaries found in the repo",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
},
{
"name": "Branch-Protection",
"score": null,
"reason": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
},
{
"name": "CI-Tests",
"score": 5,
"reason": "1 out of 2 merged PRs checked by a CI test -- score normalized to 5",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
},
{
"name": "CII-Best-Practices",
"score": 0,
"reason": "no effort to earn an OpenSSF best practices badge detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
},
{
"name": "Code-Review",
"score": 0,
"reason": "Found 2/30 approved changesets -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
},
{
"name": "Contributors",
"score": 3,
"reason": "project has 1 contributing companies or organizations -- score normalized to 3",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
},
{
"name": "Dangerous-Workflow",
"score": 10,
"reason": "no dangerous workflow patterns detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
},
{
"name": "Dependency-Update-Tool",
"score": 0,
"reason": "no update tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
},
{
"name": "Fuzzing",
"score": 0,
"reason": "project is not fuzzed",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
},
{
"name": "License",
"score": 10,
"reason": "license file detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
},
{
"name": "Maintained",
"score": 10,
"reason": "10 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 10",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
},
{
"name": "Packaging",
"score": null,
"reason": "packaging workflow not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
},
{
"name": "Pinned-Dependencies",
"score": 0,
"reason": "dependency not pinned by hash detected -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
},
{
"name": "SAST",
"score": 0,
"reason": "SAST tool is not run on all commits -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
},
{
"name": "Security-Policy",
"score": 0,
"reason": "security policy file not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
},
{
"name": "Signed-Releases",
"score": null,
"reason": "no releases found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
},
{
"name": "Token-Permissions",
"score": 0,
"reason": "detected GitHub workflow tokens with excessive permissions",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
},
{
"name": "Vulnerabilities",
"score": 10,
"reason": "0 existing vulnerabilities detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
}
],
"commit": "91432afb7d1c863b96720d4c7f2f067a14fd2105",
"ran_at": "2026-07-23T16:15:49Z",
"aggregate_score": 4.4,
"scorecard_version": "v5.5.0"
},
"has_codeql_workflow": false,
"has_security_policy": false,
"has_dependabot_config": false
},
"contribution_flow": {
"collected": true,
"ci_last_run_at": "2026-07-14T09:25:25Z",
"oldest_open_prs": [],
"last_merged_pr_at": "2026-01-28T20:56:01Z",
"ci_last_conclusion": "SUCCESS",
"oldest_open_issues": [
{
"number": 159,
"created_at": "2026-06-10T08:45:16Z",
"last_comment_at": "2026-06-12T11:23:04Z",
"last_comment_author": "kcleal"
},
{
"number": 160,
"created_at": "2026-07-16T10:02:26Z",
"last_comment_at": "2026-07-16T14:29:42Z",
"last_comment_author": "kcleal"
}
]
}
},
"config": {
"disabled_metrics": [],
"disabled_categories": [],
"disabled_components": {}
},
"source": {
"url": "https://github.com/kcleal/dysgu",
"host": "github.com",
"name": "dysgu",
"owner": "kcleal"
},
"metrics": {
"overall": {
"key": "overall",
"band": "moderate",
"name": "Overall health",
"note": null,
"notes": [],
"value": 61,
"inputs": {
"security": 44,
"vitality": 74,
"community": 48,
"governance": 62,
"engineering": 69
},
"components": []
},
"categories": [
{
"key": "vitality",
"band": "good",
"name": "Vitality",
"value": 74,
"weight": 0.22,
"metrics": [
{
"key": "development_activity",
"band": "moderate",
"name": "Development activity",
"note": null,
"notes": [],
"value": 62,
"inputs": {
"commits_last_year": 33,
"human_commit_share": 1,
"days_since_last_push": 9,
"active_weeks_last_year": 14
},
"components": [
{
"key": "push_recency",
"name": "Push recency",
"detail": "last push 9 days ago",
"points": 28.8,
"status": "partial",
"details": [
{
"code": "push_recency",
"params": {
"days": 9
}
}
],
"max_points": 36
},
{
"key": "commit_cadence",
"name": "Commit cadence",
"detail": "14/52 weeks with commits",
"points": 9.7,
"status": "partial",
"details": [
{
"code": "commit_cadence_weeks",
"params": {
"weeks": 14
}
}
],
"max_points": 36
},
{
"key": "commit_volume",
"name": "Commit volume",
"detail": "33 commits in the last year",
"points": 13.8,
"status": "partial",
"details": [
{
"code": "commits_last_year",
"params": {
"count": 33
}
}
],
"max_points": 18
},
{
"key": "openssf_scorecard_maintained",
"name": "OpenSSF Scorecard: Maintained",
"detail": "10 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 10",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "release_discipline",
"band": "excellent",
"name": "Release discipline",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 92,
"inputs": {
"releases_count": 29,
"latest_release_tag": "v1.9.0",
"releases_from_tags": false,
"days_since_latest_release": 9,
"mean_days_between_releases": 53.8
},
"components": [
{
"key": "ships_releases",
"name": "Ships releases",
"detail": "29 releases published",
"points": 27,
"status": "met",
"details": [
{
"code": "releases_published",
"params": {
"count": 29
}
}
],
"max_points": 27
},
{
"key": "release_recency",
"name": "Release recency",
"detail": "latest release 9 days ago",
"points": 36,
"status": "met",
"details": [
{
"code": "release_recency",
"params": {
"days": 9
}
}
],
"max_points": 36
},
{
"key": "release_cadence",
"name": "Release cadence",
"detail": "a release every ~53.8 days",
"points": 19.8,
"status": "partial",
"details": [
{
"code": "release_cadence",
"params": {
"gap": 53.8
}
}
],
"max_points": 27
},
{
"key": "openssf_scorecard_signed_releases",
"name": "OpenSSF Scorecard: Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
}
]
},
{
"key": "abandonment",
"band": "excellent",
"name": "Abandonment",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"cap": null,
"state": "maintained",
"guards": [],
"signals": [],
"red_flag": false,
"multiplier_pct": 100,
"declared_reason": null,
"unverified_reason": null,
"unanswered_open_prs": null,
"unanswered_open_issues": null,
"days_since_last_merged_pr": null,
"days_since_last_human_commit": 38,
"days_since_last_human_commit_is_floor": false
},
"components": [
{
"key": "project_is_still_maintained",
"name": "Project is still maintained",
"detail": "last human commit 38 days ago",
"points": 100,
"status": "met",
"details": [
{
"code": "abandonment_maintained",
"params": {
"days": 38
}
}
],
"max_points": 100
}
]
}
],
"description": "Is the project alive — is code being written and are releases shipping?"
},
{
"key": "community",
"band": "at_risk",
"name": "Community & Adoption",
"value": 48,
"weight": 0.18,
"metrics": [
{
"key": "popularity",
"band": "at_risk",
"name": "Popularity & adoption",
"note": null,
"notes": [],
"value": 43,
"inputs": {
"forks": 14,
"stars": 115,
"watchers": 2,
"growth_state": "unverified",
"growth_factor_pct": 100,
"growth_unverified_reason": "no_history"
},
"components": [
{
"key": "stars",
"name": "Stars",
"detail": "115 stars",
"points": 33.4,
"status": "partial",
"details": [
{
"code": "stars",
"params": {
"count": 115
}
}
],
"max_points": 60
},
{
"key": "forks",
"name": "Forks",
"detail": "14 forks",
"points": 9.3,
"status": "partial",
"details": [
{
"code": "forks",
"params": {
"count": 14
}
}
],
"max_points": 25
},
{
"key": "watchers",
"name": "Watchers",
"detail": "2 watchers",
"points": 0,
"status": "missed",
"details": [
{
"code": "watchers",
"params": {
"count": 2
}
}
],
"max_points": 15
}
]
},
{
"key": "community_health",
"band": "moderate",
"name": "Community health",
"note": null,
"notes": [],
"value": 50,
"inputs": {
"has_readme": true,
"has_license": true,
"has_contributing": false,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 22.5,
"status": "met",
"details": [],
"max_points": 22.5
},
{
"key": "license",
"name": "License",
"detail": "recognized license (MIT)",
"points": 22.5,
"status": "met",
"details": [
{
"code": "license_standard",
"params": {}
},
{
"code": "license_spdx",
"params": {
"spdx": "MIT"
}
}
],
"max_points": 22.5
},
{
"key": "contributing_guide",
"name": "CONTRIBUTING guide",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "code_of_conduct",
"name": "Code of conduct",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 13.5
},
{
"key": "issue_template",
"name": "Issue template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.2
},
{
"key": "pr_template",
"name": "PR template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.3
}
]
},
{
"key": "ecosystem_adoption",
"band": "moderate",
"name": "Ecosystem adoption (downloads)",
"note": "Excluded from scoring (no data or not applicable): Registry dependents. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"registry_dependents"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 53,
"inputs": {
"packages": [
"dysgu"
],
"dependents": null,
"ecosystems": "pypi",
"total_downloads": null,
"monthly_downloads": 1527
},
"components": [
{
"key": "monthly_downloads",
"name": "Monthly downloads",
"detail": "1,527 downloads/month across pypi",
"points": 42.5,
"status": "partial",
"details": [
{
"code": "downloads_monthly",
"params": {
"count": 1527,
"ecosystems": "pypi"
}
}
],
"max_points": 80
},
{
"key": "registry_dependents",
"name": "Registry dependents",
"detail": "not reported by this ecosystem",
"points": 0,
"status": "excluded",
"details": [
{
"code": "not_reported_by_this_ecosystem",
"params": {}
}
],
"max_points": 20
}
]
}
],
"description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
},
{
"key": "governance",
"band": "moderate",
"name": "Sustainability & Governance",
"value": 62,
"weight": 0.24,
"metrics": [
{
"key": "maintainer_resilience",
"band": "critical",
"name": "Maintainer resilience (bus factor)",
"note": null,
"notes": [],
"value": 24,
"inputs": {
"bus_factor": 1,
"contributors_sampled": 8,
"top_contributor_share": 0.945
},
"components": [
{
"key": "bus_factor",
"name": "Bus factor",
"detail": "1 contributor(s) cover half of all commits",
"points": 9,
"status": "partial",
"details": [
{
"code": "bus_factor",
"params": {
"count": 1
}
}
],
"max_points": 54
},
{
"key": "commit_distribution",
"name": "Commit distribution",
"detail": "top contributor authored 94% of commits",
"points": 1.2,
"status": "partial",
"details": [
{
"code": "top_contributor_share",
"params": {
"share": 94
}
}
],
"max_points": 22.5
},
{
"key": "contributor_breadth",
"name": "Contributor breadth",
"detail": "8 contributors",
"points": 10.8,
"status": "partial",
"details": [
{
"code": "contributors_sampled",
"params": {
"count": 8
}
}
],
"max_points": 13.5
},
{
"key": "openssf_scorecard_contributors",
"name": "OpenSSF Scorecard: Contributors",
"detail": "project has 1 contributing companies or organizations -- score normalized to 3",
"points": 3,
"status": "partial",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "good",
"name": "Issue & PR responsiveness",
"note": null,
"notes": [],
"value": 81,
"inputs": {
"merged_prs": 38,
"open_issues": 2,
"closed_issues": 116,
"issue_closed_ratio": 0.983,
"closed_unmerged_prs": 4
},
"components": [
{
"key": "issue_resolution",
"name": "Issue resolution",
"detail": "98% of issues closed",
"points": 46,
"status": "partial",
"details": [
{
"code": "issues_closed_share",
"params": {
"share": 98
}
}
],
"max_points": 46.75
},
{
"key": "pr_acceptance",
"name": "PR acceptance",
"detail": "38/42 decided PRs merged",
"points": 34.6,
"status": "partial",
"details": [
{
"code": "decided_prs_merged",
"params": {
"merged": 38,
"decided": 42
}
}
],
"max_points": 38.25
},
{
"key": "openssf_scorecard_code_review",
"name": "OpenSSF Scorecard: Code-Review",
"detail": "Found 2/30 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
}
]
},
{
"key": "stewardship",
"band": "moderate",
"name": "Ownership & stewardship",
"note": "Excluded from scoring (no data or not applicable): Verified domain. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"verified_domain"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 58,
"inputs": {
"followers": 76,
"owner_type": "User",
"is_verified": null,
"owner_login": "kcleal",
"public_repos": 29,
"account_age_days": 2878
},
"components": [
{
"key": "ownership_backing",
"name": "Ownership backing",
"detail": "personal (user) account",
"points": 10,
"status": "partial",
"details": [
{
"code": "owner_personal",
"params": {}
}
],
"max_points": 30
},
{
"key": "verified_domain",
"name": "Verified domain",
"detail": "not applicable to user accounts",
"points": 0,
"status": "excluded",
"details": [
{
"code": "not_applicable_to_user_accounts",
"params": {}
}
],
"max_points": 20
},
{
"key": "owner_reach",
"name": "Owner reach",
"detail": "76 followers of kcleal",
"points": 13.6,
"status": "partial",
"details": [
{
"code": "owner_followers",
"params": {
"count": 76,
"login": "kcleal"
}
}
],
"max_points": 25
},
{
"key": "track_record",
"name": "Track record",
"detail": "29 public repos, account ~7 yr old",
"points": 22.8,
"status": "partial",
"details": [
{
"code": "public_repos",
"params": {
"count": 29
}
},
{
"code": "account_age_years",
"params": {
"years": 7
}
}
],
"max_points": 25
}
]
},
{
"key": "package_maintenance",
"band": "excellent",
"name": "Package maintenance",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"packages": [
"dysgu"
],
"ecosystems": "pypi",
"any_deprecated": false,
"min_days_since_publish": 7
},
"components": [
{
"key": "published_resolvable",
"name": "Published & resolvable",
"detail": "1 package(s) on pypi",
"points": 25,
"status": "met",
"details": [
{
"code": "packages_published",
"params": {
"count": 1,
"ecosystems": "pypi"
}
}
],
"max_points": 25
},
{
"key": "publish_recency",
"name": "Publish recency",
"detail": "latest publish 7 days ago",
"points": 35,
"status": "met",
"details": [
{
"code": "publish_recency",
"params": {
"days": 7
}
}
],
"max_points": 35
},
{
"key": "version_history",
"name": "Version history",
"detail": "43 published versions",
"points": 20,
"status": "met",
"details": [
{
"code": "published_versions",
"params": {
"count": 43
}
}
],
"max_points": 20
},
{
"key": "not_deprecated",
"name": "Not deprecated",
"detail": "active, not deprecated or yanked",
"points": 20,
"status": "met",
"details": [
{
"code": "package_not_deprecated",
"params": {}
}
],
"max_points": 20
}
]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "moderate",
"name": "Engineering Quality",
"value": 69,
"weight": 0.2,
"metrics": [
{
"key": "engineering_practices",
"band": "moderate",
"name": "Engineering practices",
"note": null,
"notes": [],
"value": 58,
"inputs": {
"has_ci": true,
"has_tests": true,
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": "1 workflow(s)",
"points": 24,
"status": "met",
"details": [
{
"code": "ci_workflows",
"params": {
"count": 1
}
}
],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 24,
"status": "met",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "1 out of 2 merged PRs checked by a CI test -- score normalized to 5",
"points": 10,
"status": "partial",
"details": [],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "excellent",
"name": "Documentation",
"note": null,
"notes": [],
"value": 85,
"inputs": {
"topics": [
"genomics",
"bioinformatics",
"structural-variation",
"variant-calling",
"paired-end",
"long-read",
"structural",
"variant"
],
"has_wiki": true,
"homepage": null,
"has_readme": true,
"has_docs_dir": true,
"has_description": true
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 30,
"status": "met",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 25,
"status": "met",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": "8 topics",
"points": 10,
"status": "met",
"details": [
{
"code": "topics_count",
"params": {
"count": 8
}
}
],
"max_points": 10
},
{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "at_risk",
"name": "Security",
"value": 44,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "at_risk",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): Branch-Protection, Packaging, Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"branch_protection",
"packaging",
"signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 44,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 15,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 3,
"scorecard_aggregate": 4.4
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "1 out of 2 merged PRs checked by a CI test -- score normalized to 5",
"points": 1.2,
"status": "partial",
"details": [],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 2/30 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 1 contributing companies or organizations -- score normalized to 3",
"points": 0.8,
"status": "partial",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no dangerous workflow patterns detected",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "no update tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "10 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 10",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow not detected",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "SAST tool is not run on all commits -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "detected GitHub workflow tokens with excessive permissions",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "0 existing vulnerabilities detected",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "excellent",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"review_only_matches": 0,
"assessed_self_published_locations": 8
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "at_risk",
"name": "AI Readiness",
"value": 37,
"weight": 0,
"metrics": [
{
"key": "ai_agent_context",
"band": "critical",
"name": "Agent context & guidance",
"note": null,
"notes": [],
"value": 12,
"inputs": {
"has_llms_txt": false,
"legible_history_share": 0.22,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "legible_commit_history",
"name": "Legible commit history",
"detail": "22 of 100 human commits state their intent (structured subject or explanatory body)",
"points": 11.7,
"status": "partial",
"details": [
{
"code": "legible_history",
"params": {
"legible": 22,
"sampled": 100
}
}
],
"max_points": 40
}
]
},
{
"key": "ai_verify_loop",
"band": "moderate",
"name": "Verify loop (build / test / typecheck)",
"note": null,
"notes": [],
"value": 50,
"inputs": {
"has_nix": false,
"has_tests": true,
"lockfiles": [],
"has_dockerfile": true,
"typed_language": false,
"bootstrap_files": [
"docs/Makefile"
],
"has_devcontainer": false,
"has_linter_config": false,
"typecheck_configs": [],
"agent_commit_share": 0,
"toolchain_manifests": [],
"dependency_bot_commit_share": 0
},
"components": [
{
"key": "one_command_bootstrap",
"name": "One-command bootstrap",
"detail": "docs/Makefile",
"points": 18,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "docs/Makefile"
}
}
],
"max_points": 18
},
{
"key": "automated_tests",
"name": "Automated tests",
"detail": null,
"points": 22,
"status": "met",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": "Dockerfile",
"points": 10,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "Dockerfile"
}
}
],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "no agent-authored commits among the last 100",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_authored_commits",
"params": {
"sampled": 100
}
}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "no automated dependency updates observed",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_dependency_automation",
"params": {}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "at_risk",
"name": "Code legibility for models",
"note": null,
"notes": [],
"value": 49,
"inputs": {
"primary_language": "Cython",
"largest_source_bytes": 783002,
"source_files_sampled": 28,
"oversized_source_files": 3
},
"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "Cython without a type-check config",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_typecheck_config_language",
"params": {
"language": "Cython"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "3/28 source files over 60KB",
"points": 49.1,
"status": "partial",
"details": [
{
"code": "oversized_source_files",
"params": {
"kb": 60,
"sampled": 28,
"oversized": 3
}
}
],
"max_points": 55
}
]
},
{
"key": "ai_interfaces",
"band": "at_risk",
"name": "Machine-readable interfaces",
"note": null,
"notes": [],
"value": 40,
"inputs": {
"example_dirs": [
"notebooks"
],
"has_mcp_signal": false,
"api_schema_files": []
},
"components": [
{
"key": "api_schema_openapi_graphql_proto",
"name": "API schema (OpenAPI/GraphQL/proto)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 40
},
{
"key": "mcp_server",
"name": "MCP server",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "runnable_examples",
"name": "Runnable examples",
"detail": "notebooks",
"points": 40,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "notebooks"
}
}
],
"max_points": 40
}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.13.0"
},
"warnings": [
"Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token",
"deps.dev does not index pypi:dysgu@1.9.0; advisories assessed against the repository dependency graph instead",
"No resolved dependencies carried a version and a supported ecosystem"
],
"report_type": "repository",
"generated_at": "2026-07-23T16:16:00.390753Z",
"schema_version": "0.27.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/k/kcleal/dysgu.svg",
"full_name": "kcleal/dysgu",
"license_state": "standard",
"license_spdx": "MIT"
}